ChIP-seq OTX2 analysis
Rest of Buecker et al.
DDX18 AATA
DDX18 iCLIP in hESCs
20211210_Urska_lane91_93
Cas13_V5 iCLIP
Anja's first attempt for clipping Cas13 using gRNA 1 and 2. And V5 antiobody to pulldown (NB600-381\tNovusBiological Antibody). Anja has more details written down. Pretty high cycles for final PCR (18 and 16 I think?)
MM study_final data
Sox2 ChIP-Seq Buecker et al 2014
OTX2 ChIP-Seq
Buecker et al, 2014, GSE56138.
RBFOX2_iCLIP_flp293
RBFOX2 iCLIP in Flip-In 293 cells. Data was published by Misra et al., 2016, doi: 10.1016/j.molcel.2015.03.016.
Birgit Blank
Samples from Birgit Blank, multiplexed with my LIN28A iCLIP & LAMA-CLIP (lane 82).
GFP-RBM12 iCLIP
iCLIP lane 93: BRD4, RBM12 and STAU
ASF project PM21207. iCLIPS JAZ, CM, LB
miclip_abclonal_202110
testing abclonal antibody on hela and ipsc-neurons
HeLa KO lines inhibitors QuantSeq
HeLa WT, FUS-KO and MATR3-KO from R.Reed lab treated with JQ1, C646, RGFP966 or DMSO
PR100_iCLIP_all_samples
MM resistant project_both rounds
iLIN28A-S200A-D-WT
iLIN28A-S200A-D-WT quick check
PR100_iCLIP
MM resistance project 1st round
LIN28A iCLIP (Novus Ab)
iCLIP done on mESC_WT (IDG3.2), iLIN28A-NLS-Halo, iLIN28A-GFP and new LIN28A KO (done by MModic). New antibody used from Novus Biologicals against human LIN28a, worked great.
iiclip benchmarking
processed PTBP1 and input CLIP data for the purpose of iiCLIP benchmarking: Lee et al. - 'An improved iCLIP protocol'