DESeq2
diffexp_deseq2.tab.gz
1.04 MB
count_matrix.tab.gz
201.95 kB
BBDuk (paired-end)
7_R1_001_preprocessed.fastq.gz
1.69 GB
7_R2_001_preprocessed.fastq.gz
1.72 GB
7_R1_001_statistics.txt.gz
1.38 kB
STAR
sample12_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
25.34 MB
sample12_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
25.42 MB
sample12_R1_001_preprocessed.bam.bai
3.52 MB
sample12_R1_001_preprocessed.bam
2.87 GB
sample12_R1_001_preprocessed_stats.txt
1.82 kB
sample12_R1_001_preprocessed_SJ.out.tab
8.94 MB
Subsample FASTQ (paired-end)
sample5_R1_001_preprocessed_downsampled.fastq.gz
58.47 MB
sample5_R2_001_preprocessed_downsampled.fastq.gz
58.13 MB
Subsample FASTQ (paired-end)
sample8_R1_001_preprocessed_downsampled.fastq.gz
57.98 MB
sample8_R2_001_preprocessed_downsampled.fastq.gz
57.59 MB
Subsample FASTQ (paired-end)
sample11_R1_001_preprocessed_downsampled.fastq.gz
57.95 MB
sample11_R2_001_preprocessed_downsampled.fastq.gz
57.63 MB
STAR
sample5_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.01 MB
sample5_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
27.14 MB
sample5_R1_001_preprocessed.bam.bai
3.55 MB
sample5_R1_001_preprocessed.bam
2.99 GB
sample5_R1_001_preprocessed_stats.txt
1.82 kB
sample5_R1_001_preprocessed_SJ.out.tab
8.99 MB
STAR
sample2_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
36.53 MB
sample2_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
36.69 MB
sample2_R1_001_preprocessed.bam.bai
3.52 MB
sample2_R1_001_preprocessed.bam
2.86 GB
sample2_R1_001_preprocessed_stats.txt
1.82 kB
sample2_R1_001_preprocessed_SJ.out.tab
9.18 MB
Subsample FASTQ (paired-end)
sample4_R1_001_preprocessed_downsampled.fastq.gz
57.44 MB
sample4_R2_001_preprocessed_downsampled.fastq.gz
56.85 MB
Subsample FASTQ (paired-end)
sample3_R1_001_preprocessed_downsampled.fastq.gz
57.88 MB
sample3_R2_001_preprocessed_downsampled.fastq.gz
57.37 MB
Subsample FASTQ (paired-end)
sample6_R1_001_preprocessed_downsampled.fastq.gz
57.90 MB
sample6_R2_001_preprocessed_downsampled.fastq.gz
57.58 MB
STAR
sample3_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
34.71 MB
sample3_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
34.79 MB
sample3_R1_001_preprocessed.bam.bai
3.31 MB
sample3_R1_001_preprocessed.bam
2.63 GB
sample3_R1_001_preprocessed_stats.txt
1.82 kB
sample3_R1_001_preprocessed_SJ.out.tab
9.24 MB
Subsample FASTQ (paired-end)
sample10_R1_001_preprocessed_downsampled.fastq.gz
57.91 MB
sample10_R2_001_preprocessed_downsampled.fastq.gz
57.49 MB
STAR
sample9_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
43.50 MB
sample9_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
44.05 MB
sample9_R1_001_preprocessed.bam.bai
3.60 MB
sample9_R1_001_preprocessed.bam
2.86 GB
sample9_R1_001_preprocessed_stats.txt
1.82 kB
sample9_R1_001_preprocessed_SJ.out.tab
8.65 MB
STAR
sample10_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
26.74 MB
sample10_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
26.90 MB
sample10_R1_001_preprocessed.bam.bai
3.91 MB
sample10_R1_001_preprocessed.bam
2.83 GB
sample10_R1_001_preprocessed_stats.txt
1.82 kB
sample10_R1_001_preprocessed_SJ.out.tab
9.40 MB
STAR
sample7_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.68 MB
sample7_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
39.44 MB
sample7_R1_001_preprocessed.bam.bai
3.52 MB
sample7_R1_001_preprocessed.bam
2.70 GB
sample7_R1_001_preprocessed_stats.txt
1.82 kB
sample7_R1_001_preprocessed_SJ.out.tab
8.69 MB
Subsample FASTQ (paired-end)
sample1_R1_001_preprocessed_downsampled.fastq.gz
57.97 MB
sample1_R2_001_preprocessed_downsampled.fastq.gz
57.34 MB
Subsample FASTQ (paired-end)
12_R1_001_preprocessed_downsampled.fastq.gz
64.61 MB
12_R2_001_preprocessed_downsampled.fastq.gz
65.66 MB
Subsample FASTQ (paired-end)
sample12_R1_001_preprocessed_downsampled.fastq.gz
57.79 MB
sample12_R2_001_preprocessed_downsampled.fastq.gz
57.37 MB
Subsample FASTQ (paired-end)
sample9_R1_001_preprocessed_downsampled.fastq.gz
58.14 MB
sample9_R2_001_preprocessed_downsampled.fastq.gz
57.71 MB
STAR
sample11_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
25.88 MB
sample11_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
26.03 MB
sample11_R1_001_preprocessed.bam.bai
3.70 MB
sample11_R1_001_preprocessed.bam
2.81 GB
sample11_R1_001_preprocessed_stats.txt
1.82 kB
sample11_R1_001_preprocessed_SJ.out.tab
8.73 MB
STAR
sample4_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
30.95 MB
sample4_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
31.01 MB
sample4_R1_001_preprocessed.bam.bai
3.70 MB
sample4_R1_001_preprocessed.bam
2.71 GB
sample4_R1_001_preprocessed_stats.txt
1.82 kB
sample4_R1_001_preprocessed_SJ.out.tab
8.85 MB
Subsample FASTQ (paired-end)
sample2_R1_001_preprocessed_downsampled.fastq.gz
58.17 MB
sample2_R2_001_preprocessed_downsampled.fastq.gz
57.58 MB
STAR
sample1_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
37.95 MB
sample1_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
38.03 MB
sample1_R1_001_preprocessed.bam.bai
3.52 MB
sample1_R1_001_preprocessed.bam
2.77 GB
sample1_R1_001_preprocessed_stats.txt
1.82 kB
sample1_R1_001_preprocessed_SJ.out.tab
9.68 MB
Subsample FASTQ (paired-end)
sample7_R1_001_preprocessed_downsampled.fastq.gz
56.95 MB
sample7_R2_001_preprocessed_downsampled.fastq.gz
56.75 MB
STAR
sample6_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.69 MB
sample6_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
24.80 MB
sample6_R1_001_preprocessed.bam.bai
3.40 MB
sample6_R1_001_preprocessed.bam
2.84 GB
sample6_R1_001_preprocessed_stats.txt
1.82 kB
sample6_R1_001_preprocessed_SJ.out.tab
8.87 MB
STAR
sample8_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
40.57 MB
sample8_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
41.17 MB
sample8_R1_001_preprocessed.bam.bai
3.60 MB
sample8_R1_001_preprocessed.bam
2.97 GB
sample8_R1_001_preprocessed_stats.txt
1.82 kB
sample8_R1_001_preprocessed_SJ.out.tab
8.98 MB
Subsample FASTQ (paired-end)
10_R1_001_preprocessed_downsampled.fastq.gz
64.04 MB
10_R2_001_preprocessed_downsampled.fastq.gz
64.84 MB
STAR
12_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
33.18 MB
12_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
33.98 MB
12_R1_001_preprocessed.bam.bai
3.43 MB
12_R1_001_preprocessed.bam
2.98 GB
12_R1_001_preprocessed_stats.txt
1.82 kB
12_R1_001_preprocessed_SJ.out.tab
8.82 MB
Subsample FASTQ (paired-end)
1_R1_001_preprocessed_downsampled.fastq.gz
62.59 MB
1_R2_001_preprocessed_downsampled.fastq.gz
63.05 MB
STAR
10_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
30.19 MB
10_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
30.80 MB
10_R1_001_preprocessed.bam.bai
3.16 MB
10_R1_001_preprocessed.bam
2.88 GB
10_R1_001_preprocessed_stats.txt
1.82 kB
10_R1_001_preprocessed_SJ.out.tab
8.48 MB
Subsample FASTQ (paired-end)
3_R1_001_preprocessed_downsampled.fastq.gz
63.39 MB
3_R2_001_preprocessed_downsampled.fastq.gz
64.30 MB
STAR
1_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
34.14 MB
1_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
34.72 MB
1_R1_001_preprocessed.bam.bai
3.18 MB
1_R1_001_preprocessed.bam
2.76 GB
1_R1_001_preprocessed_stats.txt
1.82 kB
1_R1_001_preprocessed_SJ.out.tab
8.53 MB
Subsample FASTQ (paired-end)
4_R1_001_preprocessed_downsampled.fastq.gz
63.18 MB
4_R2_001_preprocessed_downsampled.fastq.gz
63.85 MB
STAR
3_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
40.14 MB
3_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
41.08 MB
3_R1_001_preprocessed.bam.bai
3.36 MB
3_R1_001_preprocessed.bam
2.84 GB
3_R1_001_preprocessed_stats.txt
1.82 kB
3_R1_001_preprocessed_SJ.out.tab
9.05 MB
Subsample FASTQ (paired-end)
11_R1_001_preprocessed_downsampled.fastq.gz
64.29 MB
11_R2_001_preprocessed_downsampled.fastq.gz
64.93 MB
STAR
4_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.85 MB
4_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
29.43 MB
4_R1_001_preprocessed.bam.bai
3.57 MB
4_R1_001_preprocessed.bam
2.73 GB
4_R1_001_preprocessed_stats.txt
1.82 kB
4_R1_001_preprocessed_SJ.out.tab
8.00 MB
Subsample FASTQ (paired-end)
2_R1_001_preprocessed_downsampled.fastq.gz
63.76 MB
2_R2_001_preprocessed_downsampled.fastq.gz
64.87 MB
STAR
11_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
29.92 MB
11_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
30.47 MB
11_R1_001_preprocessed.bam.bai
3.17 MB
11_R1_001_preprocessed.bam
2.76 GB
11_R1_001_preprocessed_stats.txt
1.82 kB
11_R1_001_preprocessed_SJ.out.tab
8.42 MB
Subsample FASTQ (paired-end)
7_R1_001_preprocessed_downsampled.fastq.gz
64.63 MB
7_R2_001_preprocessed_downsampled.fastq.gz
65.74 MB
STAR
2_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
40.51 MB
2_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
41.84 MB
2_R1_001_preprocessed.bam.bai
3.16 MB
2_R1_001_preprocessed.bam
2.81 GB
2_R1_001_preprocessed_stats.txt
1.82 kB
2_R1_001_preprocessed_SJ.out.tab
8.62 MB
Subsample FASTQ (paired-end)
6_R1_001_preprocessed_downsampled.fastq.gz
68.26 MB
6_R2_001_preprocessed_downsampled.fastq.gz
72.55 MB
STAR
7_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
46.19 MB
7_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
48.86 MB
7_R1_001_preprocessed.bam.bai
3.05 MB
7_R1_001_preprocessed.bam
2.86 GB
7_R1_001_preprocessed_stats.txt
1.82 kB
7_R1_001_preprocessed_SJ.out.tab
8.42 MB
Subsample FASTQ (paired-end)
8_R1_001_preprocessed_downsampled.fastq.gz
64.56 MB
8_R2_001_preprocessed_downsampled.fastq.gz
65.96 MB
STAR
6_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
54.16 MB
6_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
57.39 MB
6_R1_001_preprocessed.bam.bai
3.87 MB
6_R1_001_preprocessed.bam
4.07 GB
6_R1_001_preprocessed_stats.txt
1.82 kB
6_R1_001_preprocessed_SJ.out.tab
8.93 MB
STAR
8_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
48.33 MB
8_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
50.80 MB
8_R1_001_preprocessed.bam.bai
3.57 MB
8_R1_001_preprocessed.bam
3.37 GB
8_R1_001_preprocessed_stats.txt
1.82 kB
8_R1_001_preprocessed_SJ.out.tab
8.48 MB
Subsample FASTQ (paired-end)
5_R1_001_preprocessed_downsampled.fastq.gz
63.77 MB
5_R2_001_preprocessed_downsampled.fastq.gz
64.98 MB
STAR
5_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
32.46 MB
5_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
33.36 MB
5_R1_001_preprocessed.bam.bai
3.59 MB
5_R1_001_preprocessed.bam
3.07 GB
5_R1_001_preprocessed_stats.txt
1.82 kB
5_R1_001_preprocessed_SJ.out.tab
8.10 MB
STAR
sample3_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.65 MB
sample3_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.12 MB
sample3_R1_001_preprocessed_downsampled.bam.bai
336 B
sample3_R1_001_preprocessed_downsampled.bam
1.09 MB
sample3_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample3_R1_001_preprocessed_downsampled_SJ.out.tab
255 B
STAR
sample3_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.31 MB
sample3_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.79 MB
sample3_R1_001_preprocessed_downsampled.bam.bai
960 B
sample3_R1_001_preprocessed_downsampled.bam
392.52 kB
sample3_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
sample3_R1_001_preprocessed_downsampled_SJ.out.tab
7.15 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample3_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample3_R1_001_preprocessed_rc.tab.gz
258.12 kB
sample3_R1_001_preprocessed_tpm.tab.gz
501.25 kB
sample3_R1_001_preprocessed_cpm.tab.gz
371.90 kB
sample3_R1_001_preprocessed_expressions.txt.gz
970.21 kB
STAR
sample10_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.89 MB
sample10_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.45 MB
sample10_R1_001_preprocessed_downsampled.bam.bai
336 B
sample10_R1_001_preprocessed_downsampled.bam
874.34 kB
sample10_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample10_R1_001_preprocessed_downsampled_SJ.out.tab
256 B
STAR
sample10_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.40 MB
sample10_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.97 MB
sample10_R1_001_preprocessed_downsampled.bam.bai
760 B
sample10_R1_001_preprocessed_downsampled.bam
346.27 kB
sample10_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
sample10_R1_001_preprocessed_downsampled_SJ.out.tab
7.63 kB
featureCounts
featureCounts_rc.txt.summary
351 B
sample10_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample10_R1_001_preprocessed_rc.tab.gz
258.64 kB
sample10_R1_001_preprocessed_tpm.tab.gz
512.83 kB
sample10_R1_001_preprocessed_cpm.tab.gz
375.49 kB
sample10_R1_001_preprocessed_expressions.txt.gz
985.49 kB
STAR
sample1_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.52 MB
sample1_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.87 MB
sample1_R1_001_preprocessed_downsampled.bam.bai
264 B
sample1_R1_001_preprocessed_downsampled.bam
1.42 MB
sample1_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample1_R1_001_preprocessed_downsampled_SJ.out.tab
102 B
STAR
sample1_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.40 MB
sample1_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.75 MB
sample1_R1_001_preprocessed_downsampled.bam.bai
1.00 kB
sample1_R1_001_preprocessed_downsampled.bam
419.15 kB
sample1_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample1_R1_001_preprocessed_downsampled_SJ.out.tab
7.47 kB
STAR
sample12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.93 MB
sample12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.49 MB
sample12_R1_001_preprocessed_downsampled.bam.bai
336 B
sample12_R1_001_preprocessed_downsampled.bam
1.98 MB
sample12_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample12_R1_001_preprocessed_downsampled_SJ.out.tab
357 B
STAR
sample12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.31 MB
sample12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.88 MB
sample12_R1_001_preprocessed_downsampled.bam.bai
760 B
sample12_R1_001_preprocessed_downsampled.bam
342.98 kB
sample12_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
sample12_R1_001_preprocessed_downsampled_SJ.out.tab
7.75 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample1_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample1_R1_001_preprocessed_rc.tab.gz
258.28 kB
sample1_R1_001_preprocessed_tpm.tab.gz
507.14 kB
sample1_R1_001_preprocessed_cpm.tab.gz
372.08 kB
sample1_R1_001_preprocessed_expressions.txt.gz
977.94 kB
featureCounts
featureCounts_rc.txt.summary
351 B
sample12_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample12_R1_001_preprocessed_rc.tab.gz
257.10 kB
sample12_R1_001_preprocessed_tpm.tab.gz
498.71 kB
sample12_R1_001_preprocessed_cpm.tab.gz
370.70 kB
sample12_R1_001_preprocessed_expressions.txt.gz
963.27 kB
STAR
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.01 MB
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.66 MB
sample5_R1_001_preprocessed_downsampled.bam.bai
264 B
sample5_R1_001_preprocessed_downsampled.bam
1.41 MB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
455 B
STAR
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.99 MB
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.64 MB
sample5_R1_001_preprocessed_downsampled.bam.bai
512 B
sample5_R1_001_preprocessed_downsampled.bam
243.84 kB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
5.95 kB
STAR
sample11_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.38 MB
sample11_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.05 MB
sample11_R1_001_preprocessed_downsampled.bam.bai
336 B
sample11_R1_001_preprocessed_downsampled.bam
1.55 MB
sample11_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample11_R1_001_preprocessed_downsampled_SJ.out.tab
259 B
STAR
sample11_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.45 MB
sample11_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.13 MB
sample11_R1_001_preprocessed_downsampled.bam.bai
560 B
sample11_R1_001_preprocessed_downsampled.bam
294.27 kB
sample11_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample11_R1_001_preprocessed_downsampled_SJ.out.tab
7.09 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample5_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample5_R1_001_preprocessed_rc.tab.gz
258.35 kB
sample5_R1_001_preprocessed_tpm.tab.gz
507.34 kB
sample5_R1_001_preprocessed_cpm.tab.gz
371.31 kB
sample5_R1_001_preprocessed_expressions.txt.gz
976.78 kB
STAR
sample4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.99 MB
sample4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.37 MB
sample4_R1_001_preprocessed_downsampled.bam.bai
336 B
sample4_R1_001_preprocessed_downsampled.bam
1.46 MB
sample4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample4_R1_001_preprocessed_downsampled_SJ.out.tab
462 B
STAR
sample4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.95 MB
sample4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.34 MB
sample4_R1_001_preprocessed_downsampled.bam.bai
784 B
sample4_R1_001_preprocessed_downsampled.bam
305.36 kB
sample4_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
sample4_R1_001_preprocessed_downsampled_SJ.out.tab
7.42 kB
FASTQ file (paired-end)
sample10_R1_001.fastq.gz
2.40 GB
sample10_R2_001.fastq.gz
2.51 GB
sample10_R1_001_fastqc.zip
791.83 kB
sample10_R2_001_fastqc.zip
800.95 kB
FASTQ file (paired-end)
sample12_R1_001.fastq.gz
2.28 GB
sample12_R2_001.fastq.gz
2.39 GB
sample12_R1_001_fastqc.zip
791.35 kB
sample12_R2_001_fastqc.zip
803.25 kB
featureCounts
featureCounts_rc.txt.summary
351 B
sample11_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample11_R1_001_preprocessed_rc.tab.gz
257.88 kB
sample11_R1_001_preprocessed_tpm.tab.gz
503.25 kB
sample11_R1_001_preprocessed_cpm.tab.gz
372.23 kB
sample11_R1_001_preprocessed_expressions.txt.gz
971.08 kB
FASTQ file (paired-end)
sample5_R1_001.fastq.gz
2.50 GB
sample5_R2_001.fastq.gz
2.61 GB
sample5_R1_001_fastqc.zip
790.43 kB
sample5_R2_001_fastqc.zip
795.42 kB
FASTQ file (paired-end)
sample4_R1_001.fastq.gz
2.24 GB
sample4_R2_001.fastq.gz
2.38 GB
sample4_R1_001_fastqc.zip
796.02 kB
sample4_R2_001_fastqc.zip
808.06 kB
FASTQ file (paired-end)
sample9_R1_001.fastq.gz
2.26 GB
sample9_R2_001.fastq.gz
2.36 GB
sample9_R1_001_fastqc.zip
795.94 kB
sample9_R2_001_fastqc.zip
799.74 kB
FASTQ file (paired-end)
12_R1_001.fastq.gz
2.24 GB
12_R2_001.fastq.gz
2.41 GB
12_R1_001_fastqc.zip
809.98 kB
12_R2_001_fastqc.zip
812.71 kB
FASTQ file (paired-end)
11_R1_001.fastq.gz
2.23 GB
11_R2_001.fastq.gz
2.39 GB
11_R1_001_fastqc.zip
813.98 kB
11_R2_001_fastqc.zip
814.30 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample4_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample4_R1_001_preprocessed_rc.tab.gz
256.94 kB
sample4_R1_001_preprocessed_tpm.tab.gz
509.76 kB
sample4_R1_001_preprocessed_cpm.tab.gz
367.80 kB
sample4_R1_001_preprocessed_expressions.txt.gz
974.84 kB
STAR
sample2_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.81 MB
sample2_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.21 MB
sample2_R1_001_preprocessed_downsampled.bam.bai
336 B
sample2_R1_001_preprocessed_downsampled.bam
1.27 MB
sample2_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample2_R1_001_preprocessed_downsampled_SJ.out.tab
104 B
FASTQ file (paired-end)
sample11_R1_001.fastq.gz
2.29 GB
sample11_R2_001.fastq.gz
2.37 GB
sample11_R1_001_fastqc.zip
794.30 kB
sample11_R2_001_fastqc.zip
799.31 kB
FASTQ file (paired-end)
sample3_R1_001.fastq.gz
2.20 GB
sample3_R2_001.fastq.gz
2.30 GB
sample3_R1_001_fastqc.zip
797.36 kB
sample3_R2_001_fastqc.zip
804.48 kB
FASTQ file (paired-end)
sample1_R1_001.fastq.gz
2.28 GB
sample1_R2_001.fastq.gz
2.42 GB
sample1_R1_001_fastqc.zip
797.69 kB
sample1_R2_001_fastqc.zip
806.19 kB
FASTQ file (paired-end)
sample2_R1_001.fastq.gz
2.37 GB
sample2_R2_001.fastq.gz
2.51 GB
sample2_R1_001_fastqc.zip
793.53 kB
sample2_R2_001_fastqc.zip
805.89 kB
FASTQ file (paired-end)
sample6_R1_001.fastq.gz
2.42 GB
sample6_R2_001.fastq.gz
2.51 GB
sample6_R1_001_fastqc.zip
791.11 kB
sample6_R2_001_fastqc.zip
798.95 kB
FASTQ file (paired-end)
sample7_R1_001.fastq.gz
2.29 GB
sample7_R2_001.fastq.gz
2.40 GB
sample7_R1_001_fastqc.zip
801.89 kB
sample7_R2_001_fastqc.zip
808.93 kB
STAR
sample2_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.62 MB
sample2_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.02 MB
sample2_R1_001_preprocessed_downsampled.bam.bai
928 B
sample2_R1_001_preprocessed_downsampled.bam
376.19 kB
sample2_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
sample2_R1_001_preprocessed_downsampled_SJ.out.tab
7.13 kB
FASTQ file (paired-end)
sample8_R1_001.fastq.gz
2.47 GB
sample8_R2_001.fastq.gz
2.58 GB
sample8_R1_001_fastqc.zip
793.55 kB
sample8_R2_001_fastqc.zip
800.81 kB
FASTQ file (paired-end)
3_R1_001.fastq.gz
2.26 GB
3_R2_001.fastq.gz
2.37 GB
3_R1_001_fastqc.zip
812.76 kB
3_R2_001_fastqc.zip
813.23 kB
FASTQ file (paired-end)
10_R1_001.fastq.gz
2.27 GB
10_R2_001.fastq.gz
2.44 GB
10_R1_001_fastqc.zip
813.74 kB
10_R2_001_fastqc.zip
815.75 kB
FASTQ file (paired-end)
1_R1_001.fastq.gz
2.20 GB
1_R2_001.fastq.gz
2.29 GB
1_R1_001_fastqc.zip
813.31 kB
1_R2_001_fastqc.zip
809.68 kB
FASTQ file (paired-end)
2_R1_001.fastq.gz
2.27 GB
2_R2_001.fastq.gz
2.39 GB
2_R1_001_fastqc.zip
817.07 kB
2_R2_001_fastqc.zip
818.41 kB
FASTQ file (paired-end)
5_R1_001.fastq.gz
2.27 GB
5_R2_001.fastq.gz
2.43 GB
5_R1_001_fastqc.zip
814.54 kB
5_R2_001_fastqc.zip
815.69 kB
FASTQ file (paired-end)
7_R1_001.fastq.gz
2.25 GB
7_R2_001.fastq.gz
2.42 GB
7_R1_001_fastqc.zip
814.54 kB
7_R2_001_fastqc.zip
817.84 kB
FASTQ file (paired-end)
4_R1_001.fastq.gz
2.20 GB
4_R2_001.fastq.gz
2.34 GB
4_R1_001_fastqc.zip
808.83 kB
4_R2_001_fastqc.zip
813.30 kB
STAR
sample7_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.44 MB
sample7_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.23 MB
sample7_R1_001_preprocessed_downsampled.bam.bai
336 B
sample7_R1_001_preprocessed_downsampled.bam
1.46 MB
sample7_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample7_R1_001_preprocessed_downsampled_SJ.out.tab
155 B
FASTQ file (paired-end)
6_R1_001.fastq.gz
2.96 GB
6_R2_001.fastq.gz
3.29 GB
6_R1_001_fastqc.zip
817.56 kB
6_R2_001_fastqc.zip
827.10 kB
FASTQ file (paired-end)
8_R1_001.fastq.gz
2.29 GB
8_R2_001.fastq.gz
2.47 GB
8_R1_001_fastqc.zip
816.50 kB
8_R2_001_fastqc.zip
817.13 kB
STAR
sample7_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.44 MB
sample7_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.23 MB
sample7_R1_001_preprocessed_downsampled.bam.bai
544 B
sample7_R1_001_preprocessed_downsampled.bam
275.15 kB
sample7_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample7_R1_001_preprocessed_downsampled_SJ.out.tab
6.72 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample2_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample2_R1_001_preprocessed_rc.tab.gz
258.54 kB
sample2_R1_001_preprocessed_tpm.tab.gz
506.97 kB
sample2_R1_001_preprocessed_cpm.tab.gz
370.69 kB
sample2_R1_001_preprocessed_expressions.txt.gz
977.30 kB
STAR
sample6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.62 MB
sample6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.29 MB
sample6_R1_001_preprocessed_downsampled.bam.bai
336 B
sample6_R1_001_preprocessed_downsampled.bam
1.18 MB
sample6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample6_R1_001_preprocessed_downsampled_SJ.out.tab
361 B
STAR
sample6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.42 MB
sample6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.10 MB
sample6_R1_001_preprocessed_downsampled.bam.bai
568 B
sample6_R1_001_preprocessed_downsampled.bam
219.40 kB
sample6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample6_R1_001_preprocessed_downsampled_SJ.out.tab
5.66 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample7_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample7_R1_001_preprocessed_rc.tab.gz
257.80 kB
sample7_R1_001_preprocessed_tpm.tab.gz
512.44 kB
sample7_R1_001_preprocessed_cpm.tab.gz
371.37 kB
sample7_R1_001_preprocessed_expressions.txt.gz
980.17 kB
STAR
sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.80 MB
sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.34 MB
sample9_R1_001_preprocessed_downsampled.bam.bai
336 B
sample9_R1_001_preprocessed_downsampled.bam
2.62 MB
sample9_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample9_R1_001_preprocessed_downsampled_SJ.out.tab
306 B
STAR
sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.66 MB
sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.22 MB
sample9_R1_001_preprocessed_downsampled.bam.bai
528 B
sample9_R1_001_preprocessed_downsampled.bam
256.60 kB
sample9_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample9_R1_001_preprocessed_downsampled_SJ.out.tab
5.49 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample6_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample6_R1_001_preprocessed_rc.tab.gz
256.73 kB
sample6_R1_001_preprocessed_tpm.tab.gz
497.78 kB
sample6_R1_001_preprocessed_cpm.tab.gz
368.06 kB
sample6_R1_001_preprocessed_expressions.txt.gz
960.38 kB
STAR
sample8_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.21 MB
sample8_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.81 MB
sample8_R1_001_preprocessed_downsampled.bam.bai
336 B
sample8_R1_001_preprocessed_downsampled.bam
1.87 MB
sample8_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample8_R1_001_preprocessed_downsampled_SJ.out.tab
259 B
STAR
sample8_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.51 MB
sample8_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.11 MB
sample8_R1_001_preprocessed_downsampled.bam.bai
496 B
sample8_R1_001_preprocessed_downsampled.bam
224.88 kB
sample8_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample8_R1_001_preprocessed_downsampled_SJ.out.tab
5.81 kB
featureCounts
featureCounts_rc.txt.summary
351 B
sample9_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample9_R1_001_preprocessed_rc.tab.gz
258.71 kB
sample9_R1_001_preprocessed_tpm.tab.gz
519.14 kB
sample9_R1_001_preprocessed_cpm.tab.gz
374.54 kB
sample9_R1_001_preprocessed_expressions.txt.gz
991.74 kB
MultiQC
multiqc_report.html
1.24 MB
STAR
12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
62.60 MB
12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
63.59 MB
12_R1_001_preprocessed_downsampled.bam.bai
336 B
12_R1_001_preprocessed_downsampled.bam
2.13 MB
12_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
12_R1_001_preprocessed_downsampled_SJ.out.tab
570 B
STAR
12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
64.14 MB
12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
65.15 MB
12_R1_001_preprocessed_downsampled.bam.bai
728 B
12_R1_001_preprocessed_downsampled.bam
282.51 kB
12_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
12_R1_001_preprocessed_downsampled_SJ.out.tab
5.51 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample8_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
sample8_R1_001_preprocessed_rc.tab.gz
258.52 kB
sample8_R1_001_preprocessed_tpm.tab.gz
514.53 kB
sample8_R1_001_preprocessed_cpm.tab.gz
373.01 kB
sample8_R1_001_preprocessed_expressions.txt.gz
983.92 kB
STAR
10_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
62.57 MB
10_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
63.32 MB
10_R1_001_preprocessed_downsampled.bam.bai
336 B
10_R1_001_preprocessed_downsampled.bam
1.39 MB
10_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
10_R1_001_preprocessed_downsampled_SJ.out.tab
300 B
STAR
10_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
63.56 MB
10_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
64.33 MB
10_R1_001_preprocessed_downsampled.bam.bai
608 B
10_R1_001_preprocessed_downsampled.bam
208.21 kB
10_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
10_R1_001_preprocessed_downsampled_SJ.out.tab
4.78 kB
featureCounts
featureCounts_rc.txt.summary
345 B
12_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
12_R1_001_preprocessed_rc.tab.gz
256.45 kB
12_R1_001_preprocessed_tpm.tab.gz
495.64 kB
12_R1_001_preprocessed_cpm.tab.gz
368.87 kB
12_R1_001_preprocessed_expressions.txt.gz
958.51 kB
Samtools idxstats
idxstat_report.txt
4.10 kB
STAR
1_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
60.73 MB
1_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
61.15 MB
1_R1_001_preprocessed_downsampled.bam.bai
336 B
1_R1_001_preprocessed_downsampled.bam
1.82 MB
1_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
1_R1_001_preprocessed_downsampled_SJ.out.tab
619 B
STAR
1_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
62.00 MB
1_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
62.45 MB
1_R1_001_preprocessed_downsampled.bam.bai
1.04 kB
1_R1_001_preprocessed_downsampled.bam
328.44 kB
1_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
1_R1_001_preprocessed_downsampled_SJ.out.tab
5.79 kB
featureCounts
featureCounts_rc.txt.summary
345 B
10_R1_001_preprocessed_featureCounts_rc.txt.gz
4.74 MB
10_R1_001_preprocessed_rc.tab.gz
255.19 kB
10_R1_001_preprocessed_tpm.tab.gz
473.02 kB
10_R1_001_preprocessed_cpm.tab.gz
365.98 kB
10_R1_001_preprocessed_expressions.txt.gz
929.96 kB
Samtools idxstats
idxstat_report.txt
4.10 kB
STAR
3_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
61.74 MB
3_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
62.61 MB
3_R1_001_preprocessed_downsampled.bam.bai
336 B
3_R1_001_preprocessed_downsampled.bam
1.58 MB
3_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
3_R1_001_preprocessed_downsampled_SJ.out.tab
310 B
STAR
3_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
62.81 MB
3_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
63.69 MB
3_R1_001_preprocessed_downsampled.bam.bai
1.23 kB
3_R1_001_preprocessed_downsampled.bam
387.34 kB
3_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
3_R1_001_preprocessed_downsampled_SJ.out.tab
6.60 kB
featureCounts
featureCounts_rc.txt.summary
344 B
1_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
1_R1_001_preprocessed_rc.tab.gz
256.03 kB
1_R1_001_preprocessed_tpm.tab.gz
488.15 kB
1_R1_001_preprocessed_cpm.tab.gz
365.50 kB
1_R1_001_preprocessed_expressions.txt.gz
948.10 kB
Samtools idxstats
idxstat_report.txt
4.08 kB
Samtools idxstats
idxstat_report.txt
4.09 kB
STAR
4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
61.81 MB
4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
62.44 MB
4_R1_001_preprocessed_downsampled.bam.bai
336 B
4_R1_001_preprocessed_downsampled.bam
1.34 MB
4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
4_R1_001_preprocessed_downsampled_SJ.out.tab
462 B
STAR
4_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
62.75 MB
4_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
63.39 MB
4_R1_001_preprocessed_downsampled.bam.bai
560 B
4_R1_001_preprocessed_downsampled.bam
225.77 kB
4_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
4_R1_001_preprocessed_downsampled_SJ.out.tab
5.18 kB
STAR
11_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
63.13 MB
11_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
63.74 MB
11_R1_001_preprocessed_downsampled.bam.bai
336 B
11_R1_001_preprocessed_downsampled.bam
1.01 MB
11_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
11_R1_001_preprocessed_downsampled_SJ.out.tab
52 B
featureCounts
featureCounts_rc.txt.summary
344 B
3_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
3_R1_001_preprocessed_rc.tab.gz
257.05 kB
3_R1_001_preprocessed_tpm.tab.gz
499.19 kB
3_R1_001_preprocessed_cpm.tab.gz
367.36 kB
3_R1_001_preprocessed_expressions.txt.gz
962.30 kB
Samtools idxstats
idxstat_report.txt
4.11 kB
STAR
11_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
63.84 MB
11_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
64.45 MB
11_R1_001_preprocessed_downsampled.bam.bai
456 B
11_R1_001_preprocessed_downsampled.bam
185.18 kB
11_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
11_R1_001_preprocessed_downsampled_SJ.out.tab
4.07 kB
STAR
2_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
62.28 MB
2_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
63.36 MB
2_R1_001_preprocessed_downsampled.bam.bai
336 B
2_R1_001_preprocessed_downsampled.bam
1.32 MB
2_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
2_R1_001_preprocessed_downsampled_SJ.out.tab
414 B
STAR
2_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
63.17 MB
2_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
64.27 MB
2_R1_001_preprocessed_downsampled.bam.bai
840 B
2_R1_001_preprocessed_downsampled.bam
284.93 kB
2_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
2_R1_001_preprocessed_downsampled_SJ.out.tab
4.93 kB
featureCounts
featureCounts_rc.txt.summary
344 B
4_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
4_R1_001_preprocessed_rc.tab.gz
255.09 kB
4_R1_001_preprocessed_tpm.tab.gz
492.97 kB
4_R1_001_preprocessed_cpm.tab.gz
361.98 kB
4_R1_001_preprocessed_expressions.txt.gz
949.64 kB
Samtools idxstats
idxstat_report.txt
4.09 kB
STAR
7_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
62.82 MB
7_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
63.87 MB
7_R1_001_preprocessed_downsampled.bam.bai
336 B
7_R1_001_preprocessed_downsampled.bam
1.86 MB
7_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
7_R1_001_preprocessed_downsampled_SJ.out.tab
621 B
STAR
7_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
64.17 MB
7_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
65.24 MB
7_R1_001_preprocessed_downsampled.bam.bai
424 B
7_R1_001_preprocessed_downsampled.bam
162.52 kB
7_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
7_R1_001_preprocessed_downsampled_SJ.out.tab
3.37 kB
featureCounts
featureCounts_rc.txt.summary
345 B
11_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
11_R1_001_preprocessed_rc.tab.gz
254.90 kB
11_R1_001_preprocessed_tpm.tab.gz
474.01 kB
11_R1_001_preprocessed_cpm.tab.gz
366.00 kB
11_R1_001_preprocessed_expressions.txt.gz
931.23 kB
STAR
6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
66.44 MB
6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
70.71 MB
6_R1_001_preprocessed_downsampled.bam.bai
336 B
6_R1_001_preprocessed_downsampled.bam
1.91 MB
6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
6_R1_001_preprocessed_downsampled_SJ.out.tab
361 B
STAR
6_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
67.72 MB
6_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
72.06 MB
6_R1_001_preprocessed_downsampled.bam.bai
544 B
6_R1_001_preprocessed_downsampled.bam
211.74 kB
6_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
6_R1_001_preprocessed_downsampled_SJ.out.tab
4.82 kB
featureCounts
featureCounts_rc.txt.summary
344 B
2_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
2_R1_001_preprocessed_rc.tab.gz
255.18 kB
2_R1_001_preprocessed_tpm.tab.gz
480.74 kB
2_R1_001_preprocessed_cpm.tab.gz
365.19 kB
2_R1_001_preprocessed_expressions.txt.gz
938.28 kB
STAR
8_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
60.74 MB
8_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
62.03 MB
8_R1_001_preprocessed_downsampled.bam.bai
336 B
8_R1_001_preprocessed_downsampled.bam
4.56 MB
8_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
8_R1_001_preprocessed_downsampled_SJ.out.tab
982 B
STAR
8_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
64.10 MB
8_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
65.47 MB
8_R1_001_preprocessed_downsampled.bam.bai
456 B
8_R1_001_preprocessed_downsampled.bam
197.17 kB
8_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
8_R1_001_preprocessed_downsampled_SJ.out.tab
5.36 kB
featureCounts
featureCounts_rc.txt.summary
344 B
7_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
7_R1_001_preprocessed_rc.tab.gz
256.01 kB
7_R1_001_preprocessed_tpm.tab.gz
489.28 kB
7_R1_001_preprocessed_cpm.tab.gz
365.84 kB
7_R1_001_preprocessed_expressions.txt.gz
948.00 kB
featureCounts
featureCounts_rc.txt.summary
344 B
6_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
6_R1_001_preprocessed_rc.tab.gz
257.94 kB
6_R1_001_preprocessed_tpm.tab.gz
506.71 kB
6_R1_001_preprocessed_cpm.tab.gz
371.93 kB
6_R1_001_preprocessed_expressions.txt.gz
974.96 kB
STAR
5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
61.19 MB
5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
62.32 MB
5_R1_001_preprocessed_downsampled.bam.bai
336 B
5_R1_001_preprocessed_downsampled.bam
2.90 MB
5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
5_R1_001_preprocessed_downsampled_SJ.out.tab
566 B
featureCounts
featureCounts_rc.txt.summary
345 B
8_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
8_R1_001_preprocessed_rc.tab.gz
256.89 kB
8_R1_001_preprocessed_tpm.tab.gz
500.83 kB
8_R1_001_preprocessed_cpm.tab.gz
368.06 kB
8_R1_001_preprocessed_expressions.txt.gz
963.83 kB
MultiQC
multiqc_report.html
1.24 MB
STAR
5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
63.29 MB
5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
64.46 MB
5_R1_001_preprocessed_downsampled.bam.bai
600 B
5_R1_001_preprocessed_downsampled.bam
206.61 kB
5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
5_R1_001_preprocessed_downsampled_SJ.out.tab
4.98 kB
featureCounts
featureCounts_rc.txt.summary
344 B
5_R1_001_preprocessed_featureCounts_rc.txt.gz
4.75 MB
5_R1_001_preprocessed_rc.tab.gz
255.00 kB
5_R1_001_preprocessed_tpm.tab.gz
489.77 kB
5_R1_001_preprocessed_cpm.tab.gz
364.17 kB
5_R1_001_preprocessed_expressions.txt.gz
946.51 kB
Samtools idxstats
idxstat_report.txt
4.10 kB
MultiQC
multiqc_report.html
1.23 MB
MultiQC
multiqc_report.html
1.24 MB
DESeq2
diffexp_deseq2.tab.gz
993.98 kB
count_matrix.tab.gz
201.44 kB
Gene set
H929_CART_vs._UT_DESeq2_logFC1.0_FDR0.05_up.tab.gz
197 B
Gene set
H929_CART_vs._UT_DESeq2_logFC1.0_FDR0.05_all.tab.gz
56.30 kB
Gene set
H929_CART_vs._UT_DESeq2_logFC1.0_FDR0.05_down.tab.gz
92 B
DESeq2
diffexp_deseq2.tab.gz
992.79 kB
count_matrix.tab.gz
199.66 kB
Gene set
H929_CART_vs._untreated_DESeq2_logFC1.0_FDR0.05_up.tab.gz
322 B
Gene set
H929_CART_vs._untreated_DESeq2_logFC1.0_FDR0.05_down.tab.gz
97 B
Gene set
H929_CART_vs._untreated_DESeq2_logFC1.0_FDR0.05_all.tab.gz
55.85 kB
DESeq2
diffexp_deseq2.tab.gz
1.13 MB
count_matrix.tab.gz
210.04 kB
Gene set
H929_CART_vs._U266_UT_DESeq2_logFC1.0_FDR0.05_all.tab.gz
59.33 kB
Gene set
H929_CART_vs._U266_UT_DESeq2_logFC1.0_FDR0.05_down.tab.gz
9.77 kB
Gene set
H929_CART_vs._U266_UT_DESeq2_logFC1.0_FDR0.05_up.tab.gz
10.05 kB
DESeq2
diffexp_deseq2.tab.gz
1.13 MB
count_matrix.tab.gz
210.52 kB
Gene set
H929_CART_vs._U266_untreated_DESeq2_logFC1.0_FDR0.05_down.tab.gz
9.62 kB
Gene set
H929_CART_vs._U266_untreated_DESeq2_logFC1.0_FDR0.05_all.tab.gz
59.69 kB
Gene set
H929_CART_vs._U266_untreated_DESeq2_logFC1.0_FDR0.05_up.tab.gz
10.47 kB
DESeq2
diffexp_deseq2.tab.gz
1.04 MB
count_matrix.tab.gz
200.25 kB
Gene set
KMS_CART_vs._KMS_UT_DESeq2_logFC1.0_FDR0.05_down.tab.gz
2.41 kB
Gene set
KMS_CART_vs._KMS_UT_DESeq2_logFC1.0_FDR0.05_up.tab.gz
2.10 kB
Gene set
KMS_CART_vs._KMS_UT_DESeq2_logFC1.0_FDR0.05_all.tab.gz
55.42 kB
Gene set
KMS_CART_vs_KMS_untreated_DESeq2_logFC1.0_FDR0.05_down.tab.gz
1.92 kB
Gene set
KMS_CART_vs_KMS_untreated_DESeq2_logFC1.0_FDR0.05_all.tab.gz
55.92 kB
Gene set
KMS_CART_vs_KMS_untreated_DESeq2_logFC1.0_FDR0.05_up.tab.gz
2.19 kB
DESeq2
diffexp_deseq2.tab.gz
1.07 MB
count_matrix.tab.gz
205.44 kB
Gene set
U266_CART_vs_UT_DESeq2_logFC1.0_FDR0.05_down.tab.gz
2.08 kB
Gene set
U266_CART_vs_UT_DESeq2_logFC1.0_FDR0.05_up.tab.gz
1.83 kB
Gene set
U266_CART_vs_UT_DESeq2_logFC1.0_FDR0.05_all.tab.gz
57.60 kB
Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.11 kB
Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
4.10 kB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.11 kB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.10 kB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.11 kB
MultiQC
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.08 kB
Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_report.html
1.24 MB
MultiQC
multiqc_report.html
1.24 MB
MultiQC
multiqc_report.html
1.24 MB
MultiQC
multiqc_report.html
1.23 MB
MultiQC
multiqc_report.html
1.24 MB
MultiQC
multiqc_report.html
1.23 MB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.08 kB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.11 kB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.08 kB
MultiQC
multiqc_report.html
1.24 MB
Samtools idxstats
idxstat_report.txt
4.08 kB
BBDuk (paired-end)
sample3_R1_001_preprocessed.fastq.gz
1.59 GB
sample3_R2_001_preprocessed.fastq.gz
1.57 GB
sample3_R1_001_statistics.txt.gz
1.09 kB
BBDuk (paired-end)
sample10_R1_001_preprocessed.fastq.gz
1.73 GB
sample10_R2_001_preprocessed.fastq.gz
1.72 GB
sample10_R1_001_statistics.txt.gz
1.14 kB
BBDuk (paired-end)
sample1_R1_001_preprocessed.fastq.gz
1.64 GB
sample1_R2_001_preprocessed.fastq.gz
1.62 GB
sample1_R1_001_statistics.txt.gz
1.11 kB
BBDuk (paired-end)
sample11_R1_001_preprocessed.fastq.gz
1.66 GB
sample11_R2_001_preprocessed.fastq.gz
1.65 GB
sample11_R1_001_statistics.txt.gz
1.17 kB
BBDuk (paired-end)
sample12_R1_001_preprocessed.fastq.gz
1.64 GB
sample12_R2_001_preprocessed.fastq.gz
1.63 GB
sample12_R1_001_statistics.txt.gz
1.19 kB
BBDuk (paired-end)
sample5_R1_001_preprocessed.fastq.gz
1.82 GB
sample5_R2_001_preprocessed.fastq.gz
1.81 GB
sample5_R1_001_statistics.txt.gz
1.13 kB
BBDuk (paired-end)
sample4_R1_001_preprocessed.fastq.gz
1.60 GB
sample4_R2_001_preprocessed.fastq.gz
1.58 GB
sample4_R1_001_statistics.txt.gz
1.14 kB
BBDuk (paired-end)
sample2_R1_001_preprocessed.fastq.gz
1.71 GB
sample2_R2_001_preprocessed.fastq.gz
1.69 GB
sample2_R1_001_statistics.txt.gz
1.08 kB
BBDuk (paired-end)
sample7_R1_001_preprocessed.fastq.gz
1.65 GB
sample7_R2_001_preprocessed.fastq.gz
1.64 GB
sample7_R1_001_statistics.txt.gz
1.18 kB
BBDuk (paired-end)
sample6_R1_001_preprocessed.fastq.gz
1.76 GB
sample6_R2_001_preprocessed.fastq.gz
1.75 GB
sample6_R1_001_statistics.txt.gz
1.12 kB
BBDuk (paired-end)
sample9_R1_001_preprocessed.fastq.gz
1.63 GB
sample9_R2_001_preprocessed.fastq.gz
1.62 GB
sample9_R1_001_statistics.txt.gz
1.19 kB
BBDuk (paired-end)
sample8_R1_001_preprocessed.fastq.gz
1.78 GB
sample8_R2_001_preprocessed.fastq.gz
1.77 GB
sample8_R1_001_statistics.txt.gz
1.21 kB
BBDuk (paired-end)
12_R1_001_preprocessed.fastq.gz
1.68 GB
12_R2_001_preprocessed.fastq.gz
1.70 GB
12_R1_001_statistics.txt.gz
1.38 kB
BBDuk (paired-end)
1_R1_001_preprocessed.fastq.gz
1.63 GB
1_R2_001_preprocessed.fastq.gz
1.64 GB
1_R1_001_statistics.txt.gz
1.34 kB
BBDuk (paired-end)
10_R1_001_preprocessed.fastq.gz
1.71 GB
10_R2_001_preprocessed.fastq.gz
1.73 GB
10_R1_001_statistics.txt.gz
1.32 kB
BBDuk (paired-end)
3_R1_001_preprocessed.fastq.gz
1.67 GB
3_R2_001_preprocessed.fastq.gz
1.69 GB
3_R1_001_statistics.txt.gz
1.44 kB
BBDuk (paired-end)
4_R1_001_preprocessed.fastq.gz
1.63 GB
4_R2_001_preprocessed.fastq.gz
1.65 GB
4_R1_001_statistics.txt.gz
1.35 kB
BBDuk (paired-end)
11_R1_001_preprocessed.fastq.gz
1.67 GB
11_R2_001_preprocessed.fastq.gz
1.69 GB
11_R1_001_statistics.txt.gz
1.31 kB
BBDuk (paired-end)
2_R1_001_preprocessed.fastq.gz
1.69 GB
2_R2_001_preprocessed.fastq.gz
1.71 GB
2_R1_001_statistics.txt.gz
1.45 kB
BBDuk (paired-end)
6_R1_001_preprocessed.fastq.gz
2.28 GB
6_R2_001_preprocessed.fastq.gz
2.43 GB
6_R1_001_statistics.txt.gz
1.58 kB
BBDuk (paired-end)
8_R1_001_preprocessed.fastq.gz
1.71 GB
8_R2_001_preprocessed.fastq.gz
1.74 GB
8_R1_001_statistics.txt.gz
1.44 kB
BBDuk (paired-end)
5_R1_001_preprocessed.fastq.gz
1.68 GB
5_R2_001_preprocessed.fastq.gz
1.71 GB
5_R1_001_statistics.txt.gz
1.40 kB
MM resistance project 1st round
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