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Miha Modic
Jan. 31, 2022

No Sample

FASTQ file (single-end)
fastqc
Directory
stderr.txt
2.01 kB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.fastq.gz
1.30 GB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_fastqc.zip
359.07 kB
featureCounts
featureCounts_rc.txt.summary
394 B
results
Directory
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.28 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
462.87 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
339.55 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
888.58 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.16 MB
BWA ALN
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
976.59 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bw
3.68 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1016.62 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
4.50 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
386 B
FASTQ file (single-end)
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_fastqc.zip
378.27 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.fastq.gz
492.25 MB
fastqc
Directory
stderr.txt
2.05 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
FASTQ file (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq.fastq.gz
1.33 GB
fastqc
Directory
stderr.txt
1.83 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_fastqc.zip
432.44 kB
FASTQ file (single-end)
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.fastq.gz
1.21 GB
fastqc
Directory
stderr.txt
1.92 kB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_fastqc.zip
373.02 kB
FASTQ file (single-end)
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.fastq.gz
1.33 GB
fastqc
Directory
stderr.txt
1.77 kB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_fastqc.zip
376.20 kB
FASTQ file (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq.fastq.gz
1.12 GB
fastqc
Directory
stderr.txt
1.71 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_fastqc.zip
416.06 kB
FASTQ file (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq.fastq.gz
389.86 MB
fastqc
Directory
stderr.txt
1.75 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_fastqc.zip
339.27 kB
FASTQ file (single-end)
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq.fastq.gz
1.49 GB
fastqc
Directory
stderr.txt
1.71 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_fastqc.zip
414.13 kB
FASTQ file (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq.fastq.gz
923.83 MB
fastqc
Directory
stderr.txt
1.71 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_fastqc.zip
353.25 kB
FASTQ file (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq.fastq.gz
1.35 GB
fastqc
Directory
stderr.txt
1.79 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_fastqc.zip
423.56 kB
FASTQ file (single-end)
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.fastq.gz
905.41 MB
fastqc
Directory
stderr.txt
1.77 kB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq_fastqc.zip
373.37 kB
FASTQ file (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq.fastq.gz
596.67 MB
fastqc
Directory
stderr.txt
2.01 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_fastqc.zip
408.32 kB
FASTQ file (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq.fastq.gz
1.12 GB
fastqc
Directory
stderr.txt
1.97 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_fastqc.zip
411.35 kB
FASTQ file (single-end)
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.fastq.gz
1.04 GB
fastqc
Directory
stderr.txt
1.79 kB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq_fastqc.zip
379.38 kB
FASTQ file (single-end)
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.fastq.gz
1.33 GB
fastqc
Directory
stderr.txt
1.79 kB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_fastqc.zip
378.76 kB
FASTQ file (single-end)
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.fastq.gz
1.01 GB
fastqc
Directory
stderr.txt
2.03 kB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_fastqc.zip
368.85 kB
FASTQ file (single-end)
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.fastq.gz
886.80 MB
fastqc
Directory
stderr.txt
2.03 kB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_fastqc.zip
375.62 kB
FASTQ file (single-end)
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.fastq.gz
275.95 MB
fastqc
Directory
stderr.txt
2.08 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_fastqc.zip
377.70 kB
FASTQ file (single-end)
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.fastq.gz
1.22 GB
fastqc
Directory
stderr.txt
2.01 kB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_fastqc.zip
368.65 kB
FASTQ file (single-end)
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.fastq.gz
575.35 MB
fastqc
Directory
stderr.txt
2.21 kB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_fastqc.zip
365.43 kB
FASTQ file (single-end)
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.fastq.gz
1.39 GB
fastqc
Directory
stderr.txt
1.99 kB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_fastqc.zip
372.28 kB
FASTQ file (single-end)
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.fastq.gz
373.86 MB
fastqc
Directory
stderr.txt
2.12 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_fastqc.zip
363.17 kB
FASTQ file (single-end)
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.fastq.gz
290.30 MB
fastqc
Directory
stderr.txt
2.07 kB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_fastqc.zip
374.04 kB
FASTQ file (single-end)
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.fastq.gz
1.00 GB
fastqc
Directory
stderr.txt
1.97 kB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_fastqc.zip
397.99 kB
BWA ALN
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam
300.90 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam.bai
3.66 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
286.36 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bw
1.89 MB
BWA ALN
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bam
748.46 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bam.bai
4.44 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
716.93 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bw
3.50 MB
BWA ALN
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bam
884.94 MB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bam.bai
4.40 MB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
851.31 MB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bw
3.55 MB
BWA ALN
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.10 GB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
4.37 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
1.06 GB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bw
3.61 MB
BWA ALN
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bam
851.48 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bam.bai
4.29 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
820.09 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bw
3.23 MB
BWA ALN
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.10 GB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
4.55 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
386 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
1.06 GB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bw
4.02 MB
BWA ALN
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam
400.26 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam.bai
3.87 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
377.70 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bw
2.61 MB
BWA ALN
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam
736.62 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam.bai
4.12 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
705.15 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bw
3.20 MB
BWA ALN
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bam
1.08 GB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bam.bai
4.43 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
1.05 GB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bw
3.64 MB
BWA ALN
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam
1.16 GB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam.bai
4.61 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
1.12 GB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bw
4.23 MB
BWA ALN
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam
223.92 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam.bai
3.55 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.stats.txt
384 B
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
210.23 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bw
1.81 MB
BWA ALN
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam
465.91 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam.bai
3.92 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
444.90 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bw
2.35 MB
BWA ALN
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam
1.01 GB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam.bai
4.52 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
998.26 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bw
3.88 MB
Samtools idxstats
idxstat_report.txt
3.32 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
3.33 kB
Samtools idxstats
idxstat_report.txt
3.30 kB
Samtools idxstats
idxstat_report.txt
3.32 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
Samtools idxstats
idxstat_report.txt
3.34 kB
BWA ALN
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bam
871.36 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bam.bai
4.51 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
838.32 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bw
3.43 MB
BWA ALN
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam
235.44 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam.bai
4.34 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
217.82 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bw
2.71 MB
BBDuk (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.02 GB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_statistics.txt.gz
684 B
fastqc
Directory
BBDuk (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
364.00 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_statistics.txt.gz
478 B
fastqc
Directory
BBDuk (single-end)
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.27 GB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_statistics.txt.gz
575 B
fastqc
Directory
BBDuk (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
684.87 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_statistics.txt.gz
509 B
fastqc
Directory
BBDuk (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.14 GB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_statistics.txt.gz
615 B
fastqc
Directory
BBDuk (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.09 GB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_statistics.txt.gz
625 B
fastqc
Directory
BBDuk (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
564.30 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_statistics.txt.gz
720 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
37.36 MB
fastqc
Directory
BBDuk (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.01 GB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_statistics.txt.gz
793 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
30.07 MB
fastqc
Directory
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
11.43 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.bam.bai
2.63 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.bam
526.65 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.01 MB
Subsample FASTQ (single-end)
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
41.11 MB
fastqc
Directory
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
42.56 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.20 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.bam
1.03 GB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.38 MB
Subsample FASTQ (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
36.88 MB
fastqc
Directory
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
25.19 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.02 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.bam
1.03 GB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.10 MB
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
83.00 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.35 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.bam
1.42 GB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.81 MB
Subsample FASTQ (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
40.83 MB
fastqc
Directory
Subsample FASTQ (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
40.82 MB
fastqc
Directory
MACS 2.0
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_filtered.bam
2.44 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
245 B
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.tagAlign.gz
470.75 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.14 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_treat_pileup.bdg
3.78 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.xls
2.46 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.broadPeak
1.12 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.gappedPeak
215.10 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_treat_pileup.bw
653.16 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
MACS 2.0
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_filtered.bam
7.62 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
247 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.tagAlign.gz
1.23 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.87 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_treat_pileup.bdg
10.33 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_peaks.xls
1.99 kB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_peaks.broadPeak
723 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_peaks.gappedPeak
53.68 kB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.70 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
72.99 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.29 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.bam
1.29 GB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.87 MB
MACS 2.0
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_filtered.bam
7.68 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
248 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.tagAlign.gz
1.23 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.80 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.72 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_treat_pileup.bdg
10.50 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_peaks.xls
1.98 kB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_peaks.broadPeak
551 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_peaks.gappedPeak
13.22 kB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_control_lambda.bw
20.81 kB
Samtools idxstats
idxstat_report.txt
3.34 kB
MACS 2.0
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_filtered.bam
2.54 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
244 B
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.tagAlign.gz
487.51 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.07 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_filtered.bam
7.00 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.gappedPeak
207.00 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
247 B
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
3.00 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_treat_pileup.bdg
3.97 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.xls
2.66 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.broadPeak
1.11 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_treat_pileup.bw
685.66 kB
MACS 2.0
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_filtered.bam
8.36 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
244 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.tagAlign.gz
1.35 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.62 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_treat_pileup.bdg
12.28 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_peaks.xls
2.35 kB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_peaks.broadPeak
857 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_peaks.gappedPeak
31.67 kB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_treat_pileup.bw
2.08 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_control_lambda.bw
20.83 kB
MACS 2.0
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_filtered.bam
8.34 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
247 B
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.tagAlign.gz
1.38 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.80 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
MACS 2.0
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_filtered.bam
4.60 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
246 B
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.tagAlign.gz
850.43 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.20 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_treat_pileup.bdg
7.32 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_control_lambda.bdg
625 B
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_peaks.xls
2.62 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_peaks.broadPeak
1.09 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_peaks.gappedPeak
297.68 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.18 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_control_lambda.bw
20.83 kB
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
74.75 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.29 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.bam
1.28 GB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.83 MB
MACS 2.0
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_filtered.bam
7.50 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
246 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.tagAlign.gz
1.26 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.53 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_treat_pileup.bdg
11.49 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_peaks.xls
2.35 kB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_peaks.broadPeak
863 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_peaks.gappedPeak
29.93 kB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.92 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
MACS 2.0
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_filtered.bam
7.13 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
245 B
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.tagAlign.gz
1.21 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.40 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
Subsample FASTQ (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
35.81 MB
fastqc
Directory
MACS 2.0
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_filtered.bam
4.93 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
245 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.tagAlign.gz
929.21 kB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.36 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_treat_pileup.bdg
7.97 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.xls
2.18 kB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.broadPeak
887 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.gappedPeak
227.48 kB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.33 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
MACS 2.0
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_filtered.bam
6.17 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
246 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.tagAlign.gz
1.29 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_filtered.bam.bai
3.36 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_filtered.bam
7.00 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
247 B
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
3.00 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_treat_pileup.bdg
10.49 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.xls
2.13 kB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.broadPeak
627 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.gappedPeak
10.02 kB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.70 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_control_lambda.bw
20.83 kB
MACS 2.0
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_filtered.bam
6.54 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
247 B
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.tagAlign.gz
1.08 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.76 MB
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
33.33 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.14 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.bam
617.16 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.34 MB
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.63 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.48 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.23 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
11.77 kB
Subsample FASTQ (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
38.18 MB
fastqc
Directory
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.59 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
344 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
872 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
28.84 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.05 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
40 B
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.57 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.53 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.12 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
9.37 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
391 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.64 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
227.04 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
391.79 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
317.57 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
783.67 kB
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
30.13 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.88 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.96 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.79 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
15.25 kB
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
57.81 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.31 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.bam
1.12 GB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.78 MB
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
32.01 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
781 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
390 B
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
232.66 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
434.06 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
330.74 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
844.11 kB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
33.75 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.03 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
975.45 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
10.06 kB
Samtools idxstats
idxstat_report.txt
3.30 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
3.33 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
3.24 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.16 MB
Samtools idxstats
idxstat_report.txt
3.32 kB
Samtools idxstats
idxstat_report.txt
3.30 kB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
34.41 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
344 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.04 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
80 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
389 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.64 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
228.31 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
398.18 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
321.15 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
793.37 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
390 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.02 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
459.26 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
338.91 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
883.12 kB
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
29.49 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.30 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
2.34 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.79 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
14.85 kB
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
31.75 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
993 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
40 B
ChipQC
CCPlot_mqc.png
73.33 kB
CoverageHistogramPlot_mqc.png
75.86 kB
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
28.22 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.80 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
3.39 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.79 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
16.43 kB
ChipQC
CCPlot_mqc.png
72.96 kB
CoverageHistogramPlot_mqc.png
80.16 kB
ChipQC
CCPlot_mqc.png
73.24 kB
CoverageHistogramPlot_mqc.png
70.76 kB
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
31.74 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
861 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
80 B
ChipQC
CCPlot_mqc.png
76.45 kB
CoverageHistogramPlot_mqc.png
84.99 kB
ChipQC
CCPlot_mqc.png
73.82 kB
CoverageHistogramPlot_mqc.png
86.01 kB
ChipQC
CCPlot_mqc.png
73.60 kB
CoverageHistogramPlot_mqc.png
91.17 kB
ChipQC
CCPlot_mqc.png
71.80 kB
CoverageHistogramPlot_mqc.png
81.52 kB
Samtools idxstats
idxstat_report.txt
3.33 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
396 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.70 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
472.49 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
339.70 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
901.14 kB
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
25.02 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.10 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.69 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
12.67 kB
ChipQC
CCPlot_mqc.png
73.63 kB
CoverageHistogramPlot_mqc.png
81.02 kB
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.78 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
866 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
3.33 kB
ChipQC
CCPlot_mqc.png
71.09 kB
CoverageHistogramPlot_mqc.png
81.06 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
405 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
232.74 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
454.89 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
327.30 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
865.81 kB
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.13 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.76 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
2.63 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
13.96 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
29.04 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
914 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
BBDuk (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
684.65 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_statistics.txt.gz
509 B
fastqc
Directory
BBDuk (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.02 GB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_statistics.txt.gz
684 B
fastqc
Directory
featureCounts
results
Directory
featureCounts_rc.txt.summary
403 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
235.73 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
467.58 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
338.68 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
890.94 kB
BBDuk (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.fastq.gz
36.92 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_statistics.txt.gz
192 B
fastqc
Directory
BBDuk (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.fastq.gz
30.12 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_statistics.txt.gz
130 B
fastqc
Directory
BBDuk (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.09 GB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_statistics.txt.gz
625 B
fastqc
Directory
BBDuk (single-end)
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.27 GB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_statistics.txt.gz
575 B
fastqc
Directory
BBDuk (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
364.12 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_statistics.txt.gz
478 B
fastqc
Directory
BBDuk (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.14 GB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_statistics.txt.gz
615 B
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.fastq.gz
565.16 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_statistics.txt.gz
272 B
fastqc
Directory
BBDuk (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.fastq.gz
1.01 GB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_statistics.txt.gz
365 B
fastqc
Directory
BWA ALN
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bam
972.95 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bam.bai
2.39 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
20.99 MB
BWA ALN
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.16 GB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
2.98 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
17.67 MB
BWA ALN
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.43 GB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
2.04 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
23.86 MB
BWA ALN
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bam
1.14 GB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bam.bai
2.16 MB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
15.21 MB
BWA ALN
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bam
1.01 GB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bam.bai
2.77 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
15.36 MB
BWA ALN
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam
929.40 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam.bai
3.01 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
15.22 MB
BWA ALN
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bam
1.34 GB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bam.bai
2.49 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
18.70 MB
BWA ALN
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.42 GB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
2.19 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
23.26 MB
BWA ALN
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam
1.36 GB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam.bai
1.99 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
20.05 MB
BWA ALN
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam
304.21 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam.bai
3.63 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.stats.txt
386 B
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
6.37 MB
BWA ALN
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam
523.04 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam.bai
3.57 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
10.74 MB
BWA ALN
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam
300.12 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam.bai
3.74 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.stats.txt
387 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
10.67 MB
BWA ALN
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam
566.92 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam.bai
3.26 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
12.62 MB
BWA ALN
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam
1.53 GB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam.bai
1.98 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
20.65 MB
BWA ALN
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam
408.96 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam.bai
3.21 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
7.35 MB
BWA ALN
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bam
1.10 GB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bam.bai
2.17 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
20.34 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BWA ALN
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.bam
468.68 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.85 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.stats.txt
388 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_unmapped.fastq.gz
50.39 MB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
25.19 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.02 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.bam
1.03 GB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.10 MB
Subsample FASTQ (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
36.88 MB
fastqc
Directory
Subsample FASTQ (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
37.35 MB
fastqc
Directory
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz
1.43 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bam.bai
1.80 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bam
50.33 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_stats.txt
1.80 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_SJ.out.tab
1.56 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bw
2.79 MB
Subsample FASTQ (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.fastq.gz
36.88 MB
fastqc
Directory
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz
1.02 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bam.bai
1.80 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bam
37.31 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_stats.txt
1.80 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_SJ.out.tab
1.57 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bw
2.80 MB
Subsample FASTQ (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.fastq.gz
30.07 MB
fastqc
Directory
BWA ALN
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.bam
865.46 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.89 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.stats.txt
388 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_unmapped.fastq.gz
91.57 MB
Subsample FASTQ (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
40.81 MB
fastqc
Directory
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
42.56 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.20 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.bam
1.03 GB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.38 MB
Subsample FASTQ (single-end)
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
41.11 MB
fastqc
Directory
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
11.43 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.bam.bai
2.63 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.bam
526.66 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.01 MB
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
74.75 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.29 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.bam
1.28 GB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.83 MB
Samtools idxstats
idxstat_report.txt
3.33 kB
Subsample FASTQ (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
30.06 MB
fastqc
Directory
Subsample FASTQ (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
40.82 MB
fastqc
Directory
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
83.00 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.35 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.bam
1.42 GB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.81 MB
Subsample FASTQ (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.fastq.gz
35.82 MB
fastqc
Directory
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz
33.41 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.bam.bai
3.14 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.bam
617.17 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_stats.txt
1.82 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_SJ.out.tab
4.34 MB
Subsample FASTQ (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.fastq.gz
38.18 MB
fastqc
Directory
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
72.99 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.bam.bai
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SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.bam
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SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_stats.txt
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4.87 MB
Samtools idxstats
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3.30 kB
featureCounts
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featureCounts_rc.txt.summary
389 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.64 MB
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
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STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
42 B
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz
57.94 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.bam.bai
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SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.bam
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SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_stats.txt
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4.78 MB
featureCounts
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Directory
featureCounts_rc.txt.summary
407 B
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3.62 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_rc.tab.gz
207.58 kB
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_expressions.txt.gz
629.17 kB
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.63 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
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SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
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SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
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SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
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SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
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SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
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SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
41 B
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
33.76 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam.bai
1.03 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam
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SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab
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Samtools idxstats
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3.23 kB
featureCounts
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Directory
featureCounts_rc.txt.summary
410 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_featureCounts_rc.txt.gz
3.62 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_rc.tab.gz
208.19 kB
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238.07 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_expressions.txt.gz
634.07 kB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
34.42 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam.bai
344 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam
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80 B
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.58 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam.bai
1.53 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam
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STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.60 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam.bai
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SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam
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SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_stats.txt
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SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab
0 B
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
28.20 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.80 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
3.39 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.79 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
14.39 kB
Samtools idxstats
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3.32 kB
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
31.73 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
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SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
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SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
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SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
30.15 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.88 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
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SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
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SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
14.41 kB
featureCounts
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featureCounts_rc.txt.summary
390 B
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
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330.74 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
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featureCounts
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Directory
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391 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.64 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
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SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
317.57 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
783.67 kB
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
32.01 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
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SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
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SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
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featureCounts
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Directory
featureCounts_rc.txt.summary
396 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
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SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
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STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.56 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.44 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.12 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
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STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.58 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
773 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
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SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
29.48 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.30 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
2.33 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
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SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
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STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
31.74 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
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SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
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SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
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featureCounts
results
Directory
featureCounts_rc.txt.summary
390 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.02 kB
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SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
338.91 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
883.12 kB
Samtools idxstats
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3.33 kB
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
25.02 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam.bai
2.30 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam
1.71 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_stats.txt
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SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_SJ.out.tab
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featureCounts
results
Directory
featureCounts_rc.txt.summary
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SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_featureCounts_rc.txt.gz
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SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_rc.tab.gz
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SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_tpm.tab.gz
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SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_expressions.txt.gz
866.98 kB
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SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.14 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam.bai
2.60 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam
2.61 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_stats.txt
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SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_SJ.out.tab
12.16 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.79 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam.bai
344 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam
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SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_stats.txt
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SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_SJ.out.tab
0 B
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
29.04 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam.bai
272 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam
932 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_SJ.out.tab
0 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
394 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.28 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
462.87 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
339.55 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
888.58 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
416 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_rc.tab.gz
235.73 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_tpm.tab.gz
467.64 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_cpm.tab.gz
338.59 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_expressions.txt.gz
891.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.16 MB

SRR1200998_GSM1355139

Subsample FASTQ (single-end)
fastqc
Directory
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
41.11 MB
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
83.00 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.35 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.bam
1.42 GB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.81 MB
FASTQ file (single-end)
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq.fastq.gz
1.49 GB
fastqc
Directory
stderr.txt
1.71 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_fastqc.zip
414.13 kB
Samtools idxstats
idxstat_report.txt
3.33 kB
BBDuk (single-end)
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.27 GB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_statistics.txt.gz
575 B
fastqc
Directory
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
30.13 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.88 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.96 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.79 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
15.25 kB
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
32.01 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
781 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
3.33 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
390 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.02 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
459.26 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
338.91 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
883.12 kB
BBDuk (single-end)
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.27 GB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_statistics.txt.gz
575 B
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
41.11 MB
fastqc
Directory
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
83.00 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.35 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed.bam
1.42 GB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.81 MB
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
30.15 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.88 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.94 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
14.41 kB
STAR
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
32.01 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
856 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
390 B
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.02 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
459.26 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
338.91 kB
SRR1200998_GSM1355139_R1_ESC_rep2_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
883.12 kB

SRR1200999_GSM1355140

FASTQ file (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq.fastq.gz
1.35 GB
fastqc
Directory
stderr.txt
1.79 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_fastqc.zip
423.56 kB
Samtools idxstats
idxstat_report.txt
3.32 kB
BBDuk (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.14 GB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_statistics.txt.gz
615 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
40.83 MB
fastqc
Directory
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
72.99 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.29 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.bam
1.29 GB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.87 MB
Samtools idxstats
idxstat_report.txt
3.32 kB
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
29.49 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.30 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
2.34 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.79 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
14.85 kB
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
31.75 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
993 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
40 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
394 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.28 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
462.87 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
339.55 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
888.58 kB
BBDuk (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.14 GB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_statistics.txt.gz
615 B
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
40.82 MB
fastqc
Directory
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
72.99 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.29 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed.bam
1.29 GB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.87 MB
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
29.48 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.30 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
2.33 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.79 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
13.70 kB
STAR
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
31.74 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
980 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
394 B
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.28 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
462.87 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
339.55 kB
SRR1200999_GSM1355140_R1_EpiLC_noActA_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
888.58 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB

SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq

FASTQ file (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq.fastq.gz
596.67 MB
fastqc
Directory
stderr.txt
2.01 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_fastqc.zip
408.32 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
BBDuk (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
564.30 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_statistics.txt.gz
720 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
35.81 MB
fastqc
Directory
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
33.33 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.14 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.bam
617.16 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.34 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
25.02 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.10 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.69 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
12.67 kB
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.78 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
866 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
3.33 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
405 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
232.74 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
454.89 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
327.30 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
865.81 kB
BBDuk (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.fastq.gz
565.16 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_statistics.txt.gz
272 B
fastqc
Directory
BWA ALN
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.bam
468.68 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.85 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed.stats.txt
388 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_unmapped.fastq.gz
50.39 MB
Subsample FASTQ (single-end)
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.fastq.gz
35.82 MB
fastqc
Directory
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz
33.41 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.bam.bai
3.14 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.bam
617.17 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_stats.txt
1.82 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_SJ.out.tab
4.34 MB
Samtools idxstats
idxstat_report.txt
3.33 kB
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
25.02 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam.bai
2.30 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam
1.71 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_stats.txt
1.79 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_SJ.out.tab
12.45 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
418 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_rc.tab.gz
232.74 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_tpm.tab.gz
455.00 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_cpm.tab.gz
328.23 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_expressions.txt.gz
866.98 kB
STAR
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.79 MB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam.bai
344 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam
911 B
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201006_GSM1355147_Otx2-_-_tetON_Otx2_plusdox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_SJ.out.tab
0 B

SRR1201000_GSM1355141

FASTQ file (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq.fastq.gz
1.33 GB
fastqc
Directory
stderr.txt
1.83 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_fastqc.zip
432.44 kB
BBDuk (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.09 GB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_statistics.txt.gz
625 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
40.82 MB
fastqc
Directory
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
74.75 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.29 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.bam
1.28 GB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.83 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
28.22 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.80 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
3.39 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.79 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
16.43 kB
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
31.74 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
861 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
80 B
Samtools idxstats
idxstat_report.txt
3.33 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
396 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.70 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
472.49 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
339.70 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
901.14 kB
BBDuk (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.09 GB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_statistics.txt.gz
625 B
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
40.81 MB
fastqc
Directory
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
74.75 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.29 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed.bam
1.28 GB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.83 MB
Samtools idxstats
idxstat_report.txt
3.33 kB
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
28.20 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.80 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
3.39 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.79 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
14.39 kB
STAR
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
31.73 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
861 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
396 B
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
236.70 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
472.49 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
339.70 kB
SRR1201000_GSM1355141_R1_EpiLC_plusActA_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
901.14 kB

SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq

FASTQ file (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq.fastq.gz
1.12 GB
fastqc
Directory
stderr.txt
1.97 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_fastqc.zip
411.35 kB
Samtools idxstats
idxstat_report.txt
3.34 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.21 MB
BBDuk (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.01 GB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_statistics.txt.gz
793 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
38.18 MB
fastqc
Directory
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
57.81 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.31 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.bam
1.12 GB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.78 MB
Samtools idxstats
idxstat_report.txt
3.34 kB
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.13 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
2.76 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
2.63 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
13.96 kB
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
29.04 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
914 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
403 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
235.73 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
467.58 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
338.68 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
890.94 kB
BBDuk (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.fastq.gz
1.01 GB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_statistics.txt.gz
365 B
fastqc
Directory
BWA ALN
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.bam
865.46 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.89 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed.stats.txt
388 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_unmapped.fastq.gz
91.57 MB
Subsample FASTQ (single-end)
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.fastq.gz
38.18 MB
fastqc
Directory
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz
57.94 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.bam.bai
3.31 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed.bam
1.12 GB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_stats.txt
1.82 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_SJ.out.tab
4.78 MB
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.14 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam.bai
2.60 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam
2.61 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_stats.txt
1.79 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_SJ.out.tab
12.16 kB
STAR
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
29.04 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam.bai
272 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled.bam
932 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
416 B
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_rc.tab.gz
235.73 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_tpm.tab.gz
467.64 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_cpm.tab.gz
338.59 kB
SRR1201005_GSM1355146_Otx2-_-_tetON_Otx2_nodox_Mus_musculus_RNA-Seq_preprocessed_preprocessed_expressions.txt.gz
891.29 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.16 MB

SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.fastq.gz
1.33 GB
fastqc
Directory
stderr.txt
1.77 kB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_fastqc.zip
376.20 kB
BWA ALN
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.10 GB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
4.55 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
386 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
1.06 GB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bw
4.02 MB
MACS 2.0
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_filtered.bam
7.68 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
248 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.tagAlign.gz
1.23 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.80 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.72 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_treat_pileup.bdg
10.50 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_peaks.xls
1.98 kB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_peaks.broadPeak
551 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_peaks.gappedPeak
13.22 kB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_control_lambda.bw
20.81 kB
ChipQC
CCPlot_mqc.png
72.96 kB
CoverageHistogramPlot_mqc.png
80.16 kB
BWA ALN
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.43 GB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
2.04 MB
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202454_GSM1355153_p300_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
23.86 MB

SRR1200997_GSM1355138

featureCounts
featureCounts_rc.txt.summary
390 B
results
Directory
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
232.66 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
434.06 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
330.74 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
844.11 kB
FASTQ file (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq.fastq.gz
1.12 GB
fastqc
Directory
stderr.txt
1.71 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_fastqc.zip
416.06 kB
Samtools idxstats
idxstat_report.txt
3.32 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.02 GB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_statistics.txt.gz
684 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
37.36 MB
fastqc
Directory
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
42.56 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.20 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.bam
1.03 GB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.38 MB
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.63 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.48 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.23 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
11.77 kB
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
28.84 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.05 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
40 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
390 B
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.65 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
232.66 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
434.06 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
330.74 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
844.11 kB
BBDuk (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
1.02 GB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_statistics.txt.gz
684 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
37.35 MB
fastqc
Directory
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
42.56 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.20 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed.bam
1.03 GB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.38 MB
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.63 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.57 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.24 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
11.72 kB
STAR
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
28.84 MB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
272 B
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
845 B
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1200997_GSM1355138_R1_ESC_rep1_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
41 B
Samtools idxstats
idxstat_report.txt
3.32 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB

SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.fastq.gz
905.41 MB
fastqc
Directory
stderr.txt
1.77 kB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq_fastqc.zip
373.37 kB
BWA ALN
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bam
748.46 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bam.bai
4.44 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
716.93 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bw
3.50 MB
BWA ALN
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bam
972.95 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.bam.bai
2.39 MB
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202453_GSM1355152_p300_ESC_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
20.99 MB

SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.fastq.gz
1.21 GB
fastqc
Directory
stderr.txt
1.92 kB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_fastqc.zip
373.02 kB
BWA ALN
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1016.62 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
4.50 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
386 B
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
976.59 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bw
3.68 MB
MACS 2.0
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_filtered.bam
8.34 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
247 B
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.tagAlign.gz
1.38 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.80 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
BWA ALN
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.16 GB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
2.98 MB
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202460_GSM1355159_H3K27ac_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
17.67 MB

SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq

FASTQ file (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq.fastq.gz
389.86 MB
fastqc
Directory
stderr.txt
1.75 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_fastqc.zip
339.27 kB
Samtools idxstats
idxstat_report.txt
3.30 kB
BBDuk (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
364.00 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_statistics.txt.gz
478 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
30.07 MB
fastqc
Directory
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
11.43 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.bam.bai
2.63 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.bam
526.65 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.01 MB
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.59 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
344 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
872 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.57 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.53 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.12 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
9.37 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
391 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.64 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
227.04 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
391.79 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
317.57 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
783.67 kB
Samtools idxstats
idxstat_report.txt
3.30 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.fastq.gz
30.12 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_statistics.txt.gz
130 B
fastqc
Directory
BBDuk (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
364.12 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_statistics.txt.gz
478 B
fastqc
Directory
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz
1.02 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bam.bai
1.80 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bam
37.31 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_stats.txt
1.80 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_SJ.out.tab
1.57 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bw
2.80 MB
Subsample FASTQ (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.fastq.gz
30.07 MB
fastqc
Directory
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
11.43 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.bam.bai
2.63 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed.bam
526.66 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.01 MB
Subsample FASTQ (single-end)
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
30.06 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.23 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
410 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_featureCounts_rc.txt.gz
3.62 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_rc.tab.gz
208.19 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_tpm.tab.gz
331.58 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_cpm.tab.gz
238.07 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_expressions.txt.gz
634.07 kB
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.58 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam.bai
1.53 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam
1.12 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab
9.37 kB
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.60 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam.bai
344 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam
875 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
391 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.64 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
227.04 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
391.79 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
317.57 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
783.67 kB
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
26.56 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.44 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.12 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
8.61 kB
STAR
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
27.58 MB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
200 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
773 B
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201004_GSM1355145_Otx2-_-_EpiLC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
0 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.16 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB

SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq

FASTQ file (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq.fastq.gz
923.83 MB
fastqc
Directory
stderr.txt
1.71 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_fastqc.zip
353.25 kB
BBDuk (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
684.87 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_statistics.txt.gz
509 B
fastqc
Directory
Subsample FASTQ (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
36.88 MB
fastqc
Directory
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
25.19 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.02 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.bam
1.03 GB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.10 MB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
33.75 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1.03 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
975.45 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
10.06 kB
Samtools idxstats
idxstat_report.txt
3.30 kB
Samtools idxstats
idxstat_report.txt
3.24 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.16 MB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
34.41 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
344 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.04 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
80 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
389 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.64 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
228.31 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
398.18 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
321.15 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
793.37 kB
BBDuk (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.fastq.gz
684.65 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_statistics.txt.gz
509 B
fastqc
Directory
BBDuk (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.fastq.gz
36.92 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_statistics.txt.gz
192 B
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_unmapped.out.mate1.fastq.gz
25.19 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.bam.bai
3.02 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed.bam
1.03 GB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_stats.txt
1.82 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_SJ.out.tab
4.10 MB
Subsample FASTQ (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.fastq.gz
36.88 MB
fastqc
Directory
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz
1.43 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bam.bai
1.80 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bam
50.33 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_stats.txt
1.80 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_SJ.out.tab
1.56 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed.bw
2.79 MB
Subsample FASTQ (single-end)
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.fastq.gz
36.88 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
3.30 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
389 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_featureCounts_rc.txt.gz
3.64 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_rc.tab.gz
228.31 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_tpm.tab.gz
398.18 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_cpm.tab.gz
321.15 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_expressions.txt.gz
793.37 kB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
33.76 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
1016 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
972.43 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
10.51 kB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
34.41 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam.bai
344 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled.bam
1.19 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_SJ.out.tab
42 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
407 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_featureCounts_rc.txt.gz
3.62 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_rc.tab.gz
207.58 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_tpm.tab.gz
327.32 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_cpm.tab.gz
238.64 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_expressions.txt.gz
629.17 kB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
33.76 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam.bai
1.03 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam
975.37 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_stats.txt
1.78 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab
10.06 kB
STAR
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
34.42 MB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam.bai
344 B
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled.bam
1.05 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_stats.txt
1.77 kB
SRR1201003_GSM1355144_Otx2-_-_ESC_Mus_musculus_RNA-Seq_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab
80 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB

SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.fastq.gz
1.04 GB
fastqc
Directory
stderr.txt
1.79 kB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq_fastqc.zip
379.38 kB
BWA ALN
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bam
884.94 MB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bam.bai
4.40 MB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
851.31 MB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bw
3.55 MB
BWA ALN
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bam
1.14 GB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.bam.bai
2.16 MB
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202464_GSM1355163_Input_ESC_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
15.21 MB

SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.fastq.gz
1.30 GB
fastqc
Directory
stderr.txt
2.01 kB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_fastqc.zip
359.07 kB
BWA ALN
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bam
1.08 GB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bam.bai
4.43 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
1.05 GB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bw
3.64 MB
MACS 2.0
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_filtered.bam
8.36 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
244 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.tagAlign.gz
1.35 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.62 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_treat_pileup.bdg
12.28 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_peaks.xls
2.35 kB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_peaks.broadPeak
857 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_peaks.gappedPeak
31.67 kB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_treat_pileup.bw
2.08 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_control_lambda.bw
20.83 kB
ChipQC
CCPlot_mqc.png
73.82 kB
CoverageHistogramPlot_mqc.png
86.01 kB
BWA ALN
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bam
1.34 GB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.bam.bai
2.49 MB
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202472_GSM1355171_H3K27ac_EpiLC_plusActivin_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
18.70 MB

SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.fastq.gz
1.33 GB
fastqc
Directory
stderr.txt
1.79 kB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_fastqc.zip
378.76 kB
BWA ALN
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.10 GB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
4.37 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
1.06 GB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bw
3.61 MB
BWA ALN
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bam
1.42 GB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.bam.bai
2.19 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
23.26 MB

SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.fastq.gz
1.01 GB
fastqc
Directory
stderr.txt
2.03 kB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_fastqc.zip
368.85 kB
BWA ALN
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bam
851.48 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bam.bai
4.29 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
820.09 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bw
3.23 MB
MACS 2.0
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_filtered.bam
7.50 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
246 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.tagAlign.gz
1.26 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.53 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_treat_pileup.bdg
11.49 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_peaks.xls
2.35 kB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_peaks.broadPeak
863 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_peaks.gappedPeak
29.93 kB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.92 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
ChipQC
CCPlot_mqc.png
71.80 kB
CoverageHistogramPlot_mqc.png
81.52 kB
BWA ALN
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bam
1.01 GB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.bam.bai
2.77 MB
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202473_GSM1355172_H3K27ac_EpiLC_minusActivin_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
15.36 MB

SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.fastq.gz
886.80 MB
fastqc
Directory
stderr.txt
2.03 kB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_fastqc.zip
375.62 kB
BWA ALN
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam
736.62 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam.bai
4.12 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
705.15 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bw
3.20 MB
MACS 2.0
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_filtered.bam
7.13 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
245 B
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.tagAlign.gz
1.21 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.40 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
BWA ALN
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam
929.40 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam.bai
3.01 MB
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202474_GSM1355173_H3K4me1_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
15.22 MB

SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.fastq.gz
492.25 MB
fastqc
Directory
stderr.txt
2.05 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_fastqc.zip
378.27 kB
BWA ALN
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam
400.26 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam.bai
3.87 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
377.70 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bw
2.61 MB
MACS 2.0
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_filtered.bam
4.60 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
246 B
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.tagAlign.gz
850.43 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.20 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam
6.74 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
246 B
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202465_GSM1355164_Input_ESC_rep2_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
2.66 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_treat_pileup.bdg
7.32 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_control_lambda.bdg
625 B
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_peaks.xls
2.62 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_peaks.broadPeak
1.09 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_peaks.gappedPeak
297.68 kB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.18 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_control_lambda.bw
20.83 kB
ChipQC
CCPlot_mqc.png
73.60 kB
CoverageHistogramPlot_mqc.png
91.17 kB
BWA ALN
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam
523.04 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam.bai
3.57 MB
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202475_GSM1355174_H3K4me1_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
10.74 MB

SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.fastq.gz
1.39 GB
fastqc
Directory
stderr.txt
1.99 kB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_fastqc.zip
372.28 kB
BWA ALN
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam
1.16 GB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam.bai
4.61 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
1.12 GB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bw
4.23 MB
MACS 2.0
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_filtered.bam
7.62 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
247 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.tagAlign.gz
1.23 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.87 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_treat_pileup.bdg
10.33 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_peaks.xls
1.99 kB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_peaks.broadPeak
723 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_peaks.gappedPeak
53.68 kB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.70 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
ChipQC
CCPlot_mqc.png
73.24 kB
CoverageHistogramPlot_mqc.png
70.76 kB
BWA ALN
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam
1.53 GB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.bam.bai
1.98 MB
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202477_GSM1355176_Input_EpiLC_plusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
20.65 MB

SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.fastq.gz
1.22 GB
fastqc
Directory
stderr.txt
2.01 kB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_fastqc.zip
368.65 kB
BWA ALN
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam
1.01 GB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam.bai
4.52 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
998.26 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bw
3.88 MB
MACS 2.0
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_filtered.bam
6.54 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
247 B
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.tagAlign.gz
1.08 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.76 MB
BWA ALN
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam
1.36 GB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.bam.bai
1.99 MB
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202478_GSM1355177_Input_EpiLC_minusActivinA_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
20.05 MB

SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.fastq.gz
275.95 MB
fastqc
Directory
stderr.txt
2.08 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_fastqc.zip
377.70 kB
BWA ALN
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam
223.92 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam.bai
3.55 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.stats.txt
384 B
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
210.23 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bw
1.81 MB
MACS 2.0
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_filtered.bam
2.54 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
244 B
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.tagAlign.gz
487.51 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.07 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_filtered.bam
7.00 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.gappedPeak
207.00 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
247 B
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
3.00 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_treat_pileup.bdg
3.97 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.xls
2.66 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.broadPeak
1.11 kB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_treat_pileup.bw
685.66 kB
ChipQC
CCPlot_mqc.png
76.45 kB
CoverageHistogramPlot_mqc.png
84.99 kB
BWA ALN
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam
304.21 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam.bai
3.63 MB
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.stats.txt
386 B
SRR1202479_GSM1355178_Input_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
6.37 MB

SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.fastq.gz
290.30 MB
fastqc
Directory
stderr.txt
2.07 kB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_fastqc.zip
374.04 kB
BWA ALN
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam
235.44 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam.bai
4.34 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
217.82 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bw
2.71 MB
MACS 2.0
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_filtered.bam
6.17 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
246 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.tagAlign.gz
1.29 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_filtered.bam.bai
3.36 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_filtered.bam
7.00 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_prepeak_qc_report.txt
247 B
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background.tagAlign.gz
1.08 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_background_filtered.bam.bai
3.00 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_treat_pileup.bdg
10.49 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.xls
2.13 kB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.broadPeak
627 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_peaks.gappedPeak
10.02 kB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.70 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_control_lambda.bw
20.83 kB
ChipQC
CCPlot_mqc.png
71.09 kB
CoverageHistogramPlot_mqc.png
81.06 kB
BWA ALN
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam
300.12 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.bam.bai
3.74 MB
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq.stats.txt
387 B
SRR1202482_GSM1355181_Otx2_Otx2ko_tetON_Otx2_nodox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
10.67 MB

SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.fastq.gz
373.86 MB
fastqc
Directory
stderr.txt
2.12 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_fastqc.zip
363.17 kB
BWA ALN
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam
300.90 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam.bai
3.66 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
286.36 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bw
1.89 MB
MACS 2.0
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_filtered.bam
2.44 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
245 B
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.tagAlign.gz
470.75 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.14 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_treat_pileup.bdg
3.78 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.xls
2.46 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.broadPeak
1.12 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.gappedPeak
215.10 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_treat_pileup.bw
653.16 kB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
ChipQC
CCPlot_mqc.png
73.33 kB
CoverageHistogramPlot_mqc.png
75.86 kB
BWA ALN
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam
408.96 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam.bai
3.21 MB
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202480_GSM1355179_Input_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
7.35 MB

SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.fastq.gz
575.35 MB
fastqc
Directory
stderr.txt
2.21 kB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_fastqc.zip
365.43 kB
BWA ALN
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam
465.91 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam.bai
3.92 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
444.90 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bw
2.35 MB
MACS 2.0
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_filtered.bam
4.93 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt
245 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.tagAlign.gz
929.21 kB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_filtered.bam.bai
2.36 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_treat_pileup.bdg
7.97 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_control_lambda.bdg
626 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.xls
2.18 kB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.broadPeak
887 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_peaks.gappedPeak
227.48 kB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_treat_pileup.bw
1.33 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_control_lambda.bw
20.82 kB
ChipQC
CCPlot_mqc.png
73.63 kB
CoverageHistogramPlot_mqc.png
81.02 kB
BWA ALN
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam
566.92 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.bam.bai
3.26 MB
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202484_GSM1355183_Otx2_Otx2ko_tetON_Otx2_plusdox_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
12.62 MB

SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq

FASTQ file (single-end)
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.fastq.gz
1.00 GB
fastqc
Directory
stderr.txt
1.97 kB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_fastqc.zip
397.99 kB
BWA ALN
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bam
871.36 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bam.bai
4.51 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.stats.txt
385 B
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
838.32 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bw
3.43 MB
BWA ALN
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bam
1.10 GB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.bam.bai
2.17 MB
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq.stats.txt
388 B
SRR1202485_GSM1355184_Input_2i_Otx2_ChIP_rep1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz
20.34 MB