HeLa KO lines inhibitors QuantSeq

No Sample

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CAACG_Rev.fastq.gz

266.46 MB

ultraplex_demux_CAACG_Rev_fastqc.zip

872.50 kB

DESeq2

de_file.tab.gz

419.69 kB

diffexp_deseq2.tab.gz

631.38 kB

count_matrix.tab.gz

145.63 kB

DESeq2

de_file.tab.gz

401.27 kB

diffexp_deseq2.tab.gz

607.42 kB

count_matrix.tab.gz

143.99 kB

DESeq2

de_file.tab.gz

435.27 kB

diffexp_deseq2.tab.gz

654.23 kB

count_matrix.tab.gz

150.91 kB

DESeq2

de_file.tab.gz

422.38 kB

diffexp_deseq2.tab.gz

639.59 kB

count_matrix.tab.gz

155.83 kB

DESeq2

de_file.tab.gz

441.12 kB

diffexp_deseq2.tab.gz

666.05 kB

count_matrix.tab.gz

151.87 kB

DESeq2

de_file.tab.gz

406.96 kB

diffexp_deseq2.tab.gz

615.04 kB

count_matrix.tab.gz

140.42 kB

FASTQ file (single-end)

ultraplex_demux_AGTCG_Rev.fastq.gz

598.33 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_AGTCG_Rev_fastqc.zip

861.48 kB

FASTQ file (single-end)

ultraplex_demux_ACTGA_Rev.fastq.gz

618.13 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ACTGA_Rev_fastqc.zip

859.79 kB

FASTQ file (single-end)

ultraplex_demux_ACCAG_Rev.fastq.gz

689.24 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ACCAG_Rev_fastqc.zip

865.77 kB

FASTQ file (single-end)

ultraplex_demux_ACGTC_Rev.fastq.gz

323.46 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ACGTC_Rev_fastqc.zip

872.61 kB

FASTQ file (single-end)

ultraplex_demux_AGCTA_Rev.fastq.gz

562.51 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_AGCTA_Rev_fastqc.zip

864.44 kB

FASTQ file (single-end)

ultraplex_demux_AGAGC_Rev.fastq.gz

568.15 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_AGAGC_Rev_fastqc.zip

859.30 kB

FASTQ file (single-end)

ultraplex_demux_ATATG_Rev.fastq.gz

464.72 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ATATG_Rev_fastqc.zip

866.99 kB

FASTQ file (single-end)

ultraplex_demux_ATGCA_Rev.fastq.gz

395.04 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ATGCA_Rev_fastqc.zip

871.11 kB

FASTQ file (single-end)

ultraplex_demux_CATGC_Rev.fastq.gz

450.30 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CATGC_Rev_fastqc.zip

862.00 kB

FASTQ file (single-end)

ultraplex_demux_ATTAC_Rev.fastq.gz

522.21 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ATTAC_Rev_fastqc.zip

871.21 kB

FASTQ file (single-end)

ultraplex_demux_CCAAC_Rev.fastq.gz

337.73 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CCAAC_Rev_fastqc.zip

873.64 kB

FASTQ file (single-end)

ultraplex_demux_CAGTA_Rev.fastq.gz

378.92 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CAGTA_Rev_fastqc.zip

860.31 kB

FASTQ file (single-end)

ultraplex_demux_CGTAA_Rev.fastq.gz

195.55 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CGTAA_Rev_fastqc.zip

891.59 kB

FASTQ file (single-end)

ultraplex_demux_CGGCC_Rev.fastq.gz

294.75 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CGGCC_Rev_fastqc.zip

880.96 kB

FASTQ file (single-end)

ultraplex_demux_CCCCA_Rev.fastq.gz

314.85 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CCCCA_Rev_fastqc.zip

865.36 kB

FASTQ file (single-end)

ultraplex_demux_CGCGG_Rev.fastq.gz

284.00 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CGCGG_Rev_fastqc.zip

867.82 kB

FASTQ file (single-end)

ultraplex_demux_CCTTG_Rev.fastq.gz

341.28 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CCTTG_Rev_fastqc.zip

869.20 kB

FASTQ file (single-end)

ultraplex_demux_CTAGA_Rev.fastq.gz

324.62 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CTAGA_Rev_fastqc.zip

875.17 kB

FASTQ file (single-end)

ultraplex_demux_GACTG_Rev.fastq.gz

348.49 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GACTG_Rev_fastqc.zip

867.68 kB

FASTQ file (single-end)

ultraplex_demux_CTGAG_Rev.fastq.gz

437.55 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CTGAG_Rev_fastqc.zip

879.70 kB

FASTQ file (single-end)

ultraplex_demux_GCATA_Rev.fastq.gz

286.82 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GCATA_Rev_fastqc.zip

875.96 kB

FASTQ file (single-end)

ultraplex_demux_CTCTC_Rev.fastq.gz

491.86 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CTCTC_Rev_fastqc.zip

870.54 kB

FASTQ file (single-end)

ultraplex_demux_GAAGT_Rev.fastq.gz

441.77 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GAAGT_Rev_fastqc.zip

877.84 kB

FASTQ file (single-end)

ultraplex_demux_GCGCG_Rev.fastq.gz

326.71 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GCGCG_Rev_fastqc.zip

865.33 kB

FASTQ file (single-end)

ultraplex_demux_GTACC_Rev.fastq.gz

337.96 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GTACC_Rev_fastqc.zip

866.03 kB

FASTQ file (single-end)

ultraplex_demux_GATCA_Rev.fastq.gz

554.28 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GATCA_Rev_fastqc.zip

864.54 kB

FASTQ file (single-end)

ultraplex_demux_GCTAT_Rev.fastq.gz

443.28 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GCTAT_Rev_fastqc.zip

866.33 kB

FASTQ file (single-end)

ultraplex_demux_GAGAC_Rev.fastq.gz

370.03 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GAGAC_Rev_fastqc.zip

873.44 kB

FASTQ file (single-end)

ultraplex_demux_GTCAA_Rev.fastq.gz

358.71 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GTCAA_Rev_fastqc.zip

867.40 kB

FASTQ file (single-end)

ultraplex_demux_GCCGC_Rev.fastq.gz

303.40 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GCCGC_Rev_fastqc.zip

869.17 kB

FASTQ file (single-end)

ultraplex_demux_TACGA_Rev.fastq.gz

318.23 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_TACGA_Rev_fastqc.zip

869.60 kB

FASTQ file (single-end)

ultraplex_demux_GGAAG_Rev.fastq.gz

441.94 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GGAAG_Rev_fastqc.zip

871.15 kB

FASTQ file (single-end)

ultraplex_demux_GTTGG_Rev.fastq.gz

283.69 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GTTGG_Rev_fastqc.zip

874.93 kB

FASTQ file (single-end)

ultraplex_demux_TAATC_Rev.fastq.gz

109.49 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_TAATC_Rev_fastqc.zip

889.47 kB

FASTQ file (single-end)

ultraplex_demux_TAGCT_Rev.fastq.gz

351.24 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_TAGCT_Rev_fastqc.zip

867.24 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

Samtools idxstats

idxstat_report.txt

5.88 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

5.86 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.78 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

5.86 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.81 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

5.87 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.02 MB

Samtools idxstats

idxstat_report.txt

5.82 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

5.83 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.91 MB

BBDuk (single-end)

ultraplex_demux_AGTCG_Rev_preprocessed.fastq.gz

610.50 MB

ultraplex_demux_AGTCG_Rev_statistics.txt.gz

440 B

fastqc

Directory

Samtools idxstats

idxstat_report.txt

5.84 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.88 MB

BBDuk (single-end)

ultraplex_demux_ACGTC_Rev_preprocessed.fastq.gz

325.62 MB

ultraplex_demux_ACGTC_Rev_statistics.txt.gz

439 B

fastqc

Directory

Samtools idxstats

idxstat_report.txt

5.86 kB

BBDuk (single-end)

ultraplex_demux_AGCTA_Rev_preprocessed.fastq.gz

570.18 MB

ultraplex_demux_AGCTA_Rev_statistics.txt.gz

441 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_ATATG_Rev_preprocessed.fastq.gz

461.68 MB

ultraplex_demux_ATATG_Rev_statistics.txt.gz

447 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_AGAGC_Rev_preprocessed.fastq.gz

579.38 MB

ultraplex_demux_AGAGC_Rev_statistics.txt.gz

464 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_ACTGA_Rev_preprocessed.fastq.gz

636.09 MB

ultraplex_demux_ACTGA_Rev_statistics.txt.gz

440 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CAACG_Rev_preprocessed.fastq.gz

265.97 MB

ultraplex_demux_CAACG_Rev_statistics.txt.gz

400 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_ATGCA_Rev_preprocessed.fastq.gz

405.52 MB

ultraplex_demux_ATGCA_Rev_statistics.txt.gz

434 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CAGTA_Rev_preprocessed.fastq.gz

389.04 MB

ultraplex_demux_CAGTA_Rev_statistics.txt.gz

410 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_ACCAG_Rev_preprocessed.fastq.gz

688.51 MB

ultraplex_demux_ACCAG_Rev_statistics.txt.gz

453 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CATGC_Rev_preprocessed.fastq.gz

458.25 MB

ultraplex_demux_CATGC_Rev_statistics.txt.gz

425 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_ATTAC_Rev_preprocessed.fastq.gz

523.80 MB

ultraplex_demux_ATTAC_Rev_statistics.txt.gz

422 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CCAAC_Rev_preprocessed.fastq.gz

340.06 MB

ultraplex_demux_CCAAC_Rev_statistics.txt.gz

435 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CCCCA_Rev_preprocessed.fastq.gz

318.32 MB

ultraplex_demux_CCCCA_Rev_statistics.txt.gz

407 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CCTTG_Rev_preprocessed.fastq.gz

338.33 MB

ultraplex_demux_CCTTG_Rev_statistics.txt.gz

443 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CTAGA_Rev_preprocessed.fastq.gz

332.40 MB

ultraplex_demux_CTAGA_Rev_statistics.txt.gz

376 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CGGCC_Rev_preprocessed.fastq.gz

291.85 MB

ultraplex_demux_CGGCC_Rev_statistics.txt.gz

451 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CGCGG_Rev_preprocessed.fastq.gz

290.10 MB

ultraplex_demux_CGCGG_Rev_statistics.txt.gz

427 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GAGAC_Rev_preprocessed.fastq.gz

375.53 MB

ultraplex_demux_GAGAC_Rev_statistics.txt.gz

444 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CTGAG_Rev_preprocessed.fastq.gz

442.39 MB

ultraplex_demux_CTGAG_Rev_statistics.txt.gz

402 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCCGC_Rev_preprocessed.fastq.gz

311.60 MB

ultraplex_demux_GCCGC_Rev_statistics.txt.gz

438 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GTCAA_Rev_preprocessed.fastq.gz

364.56 MB

ultraplex_demux_GTCAA_Rev_statistics.txt.gz

426 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GGAAG_Rev_preprocessed.fastq.gz

450.66 MB

ultraplex_demux_GGAAG_Rev_statistics.txt.gz

399 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GATCA_Rev_preprocessed.fastq.gz

547.87 MB

ultraplex_demux_GATCA_Rev_statistics.txt.gz

436 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_TAATC_Rev_preprocessed.fastq.gz

106.72 MB

ultraplex_demux_TAATC_Rev_statistics.txt.gz

352 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GTTGG_Rev_preprocessed.fastq.gz

283.59 MB

ultraplex_demux_GTTGG_Rev_statistics.txt.gz

420 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GACTG_Rev_preprocessed.fastq.gz

343.13 MB

ultraplex_demux_GACTG_Rev_statistics.txt.gz

415 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CGTAA_Rev_preprocessed.fastq.gz

193.02 MB

ultraplex_demux_CGTAA_Rev_statistics.txt.gz

402 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CTCTC_Rev_preprocessed.fastq.gz

496.95 MB

ultraplex_demux_CTCTC_Rev_statistics.txt.gz

432 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCATA_Rev_preprocessed.fastq.gz

285.11 MB

ultraplex_demux_GCATA_Rev_statistics.txt.gz

407 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCGCG_Rev_preprocessed.fastq.gz

331.06 MB

ultraplex_demux_GCGCG_Rev_statistics.txt.gz

419 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GAAGT_Rev_preprocessed.fastq.gz

444.24 MB

ultraplex_demux_GAAGT_Rev_statistics.txt.gz

429 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCTAT_Rev_preprocessed.fastq.gz

445.21 MB

ultraplex_demux_GCTAT_Rev_statistics.txt.gz

451 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_TAGCT_Rev_preprocessed.fastq.gz

356.82 MB

ultraplex_demux_TAGCT_Rev_statistics.txt.gz

405 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.fastq.gz

38.37 MB

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_TACGA_Rev_preprocessed.fastq.gz

324.49 MB

ultraplex_demux_TACGA_Rev_statistics.txt.gz

416 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.fastq.gz

36.65 MB

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GTACC_Rev_preprocessed.fastq.gz

331.07 MB

ultraplex_demux_GTACC_Rev_statistics.txt.gz

409 B

fastqc

Directory

STAR

ultraplex_demux_ACGTC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.10 MB

ultraplex_demux_ACGTC_Rev_preprocessed.bam.bai

2.36 MB

ultraplex_demux_ACGTC_Rev_preprocessed.bam

288.17 MB

ultraplex_demux_ACGTC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_ACGTC_Rev_preprocessed_SJ.out.tab

377.29 kB

Subsample FASTQ (single-end)

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.fastq.gz

38.12 MB

fastqc

Directory

STAR

ultraplex_demux_AGTCG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

5.08 MB

ultraplex_demux_AGTCG_Rev_preprocessed.bam.bai

2.61 MB

ultraplex_demux_AGTCG_Rev_preprocessed.bam

527.98 MB

ultraplex_demux_AGTCG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_AGTCG_Rev_preprocessed_SJ.out.tab

351.16 kB

Subsample FASTQ (single-end)

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.fastq.gz

40.10 MB

fastqc

Directory

STAR

ultraplex_demux_ATATG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.23 MB

ultraplex_demux_ATATG_Rev_preprocessed.bam.bai

2.63 MB

ultraplex_demux_ATATG_Rev_preprocessed.bam

377.87 MB

ultraplex_demux_ATATG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_ATATG_Rev_preprocessed_SJ.out.tab

453.39 kB

Subsample FASTQ (single-end)

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.fastq.gz

40.32 MB

fastqc

Directory

STAR

ultraplex_demux_AGCTA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

5.89 MB

ultraplex_demux_AGCTA_Rev_preprocessed.bam.bai

2.75 MB

ultraplex_demux_AGCTA_Rev_preprocessed.bam

503.40 MB

ultraplex_demux_AGCTA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_AGCTA_Rev_preprocessed_SJ.out.tab

505.15 kB

Subsample FASTQ (single-end)

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.fastq.gz

41.55 MB

fastqc

Directory

STAR

ultraplex_demux_AGAGC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.39 MB

ultraplex_demux_AGAGC_Rev_preprocessed.bam.bai

2.63 MB

ultraplex_demux_AGAGC_Rev_preprocessed.bam

458.92 MB

ultraplex_demux_AGAGC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_AGAGC_Rev_preprocessed_SJ.out.tab

403.04 kB

Subsample FASTQ (single-end)

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.fastq.gz

37.63 MB

fastqc

Directory

STAR

ultraplex_demux_CAACG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.11 MB

ultraplex_demux_CAACG_Rev_preprocessed.bam.bai

2.34 MB

ultraplex_demux_CAACG_Rev_preprocessed.bam

236.49 MB

ultraplex_demux_CAACG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CAACG_Rev_preprocessed_SJ.out.tab

377.82 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

Subsample FASTQ (single-end)

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.fastq.gz

36.68 MB

fastqc

Directory

STAR

ultraplex_demux_ACTGA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.86 MB

ultraplex_demux_ACTGA_Rev_preprocessed.bam.bai

2.57 MB

ultraplex_demux_ACTGA_Rev_preprocessed.bam

512.81 MB

ultraplex_demux_ACTGA_Rev_preprocessed_stats.txt

1.82 kB

ultraplex_demux_ACTGA_Rev_preprocessed_SJ.out.tab

441.78 kB

Subsample FASTQ (single-end)

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.fastq.gz

38.91 MB

fastqc

Directory

STAR

ultraplex_demux_ATGCA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

5.02 MB

ultraplex_demux_ATGCA_Rev_preprocessed.bam.bai

2.42 MB

ultraplex_demux_ATGCA_Rev_preprocessed.bam

363.45 MB

ultraplex_demux_ATGCA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_ATGCA_Rev_preprocessed_SJ.out.tab

441.10 kB

Subsample FASTQ (single-end)

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.fastq.gz

38.50 MB

fastqc

Directory

STAR

ultraplex_demux_CAGTA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.66 MB

ultraplex_demux_CAGTA_Rev_preprocessed.bam.bai

2.35 MB

ultraplex_demux_CAGTA_Rev_preprocessed.bam

326.66 MB

ultraplex_demux_CAGTA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CAGTA_Rev_preprocessed_SJ.out.tab

325.13 kB

Subsample FASTQ (single-end)

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.fastq.gz

39.19 MB

fastqc

Directory

STAR

ultraplex_demux_ACCAG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

5.02 MB

ultraplex_demux_ACCAG_Rev_preprocessed.bam.bai

2.81 MB

ultraplex_demux_ACCAG_Rev_preprocessed.bam

603.59 MB

ultraplex_demux_ACCAG_Rev_preprocessed_stats.txt

1.82 kB

ultraplex_demux_ACCAG_Rev_preprocessed_SJ.out.tab

551.80 kB

STAR

ultraplex_demux_CATGC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.96 MB

ultraplex_demux_CATGC_Rev_preprocessed.bam.bai

2.47 MB

ultraplex_demux_CATGC_Rev_preprocessed.bam

376.98 MB

ultraplex_demux_CATGC_Rev_preprocessed_stats.txt

1.82 kB

ultraplex_demux_CATGC_Rev_preprocessed_SJ.out.tab

310.45 kB

Samtools idxstats

idxstat_report.txt

5.88 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.96 MB

Subsample FASTQ (single-end)

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.fastq.gz

37.02 MB

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.fastq.gz

38.48 MB

fastqc

Directory

STAR

ultraplex_demux_ATTAC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

4.46 MB

ultraplex_demux_ATTAC_Rev_preprocessed.bam.bai

2.53 MB

ultraplex_demux_ATTAC_Rev_preprocessed.bam

479.07 MB

ultraplex_demux_ATTAC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_ATTAC_Rev_preprocessed_SJ.out.tab

405.97 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.08 MB

Subsample FASTQ (single-end)

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.fastq.gz

38.46 MB

fastqc

Directory

STAR

ultraplex_demux_CCAAC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.28 MB

ultraplex_demux_CCAAC_Rev_preprocessed.bam.bai

2.36 MB

ultraplex_demux_CCAAC_Rev_preprocessed.bam

295.63 MB

ultraplex_demux_CCAAC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CCAAC_Rev_preprocessed_SJ.out.tab

325.22 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.86 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

Subsample FASTQ (single-end)

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.fastq.gz

40.39 MB

fastqc

Directory

STAR

ultraplex_demux_CCCCA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.05 MB

ultraplex_demux_CCCCA_Rev_preprocessed.bam.bai

2.35 MB

ultraplex_demux_CCCCA_Rev_preprocessed.bam

283.01 MB

ultraplex_demux_CCCCA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CCCCA_Rev_preprocessed_SJ.out.tab

248.54 kB

Subsample FASTQ (single-end)

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.fastq.gz

38.84 MB

fastqc

Directory

STAR

ultraplex_demux_CCTTG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.35 MB

ultraplex_demux_CCTTG_Rev_preprocessed.bam.bai

2.39 MB

ultraplex_demux_CCTTG_Rev_preprocessed.bam

273.28 MB

ultraplex_demux_CCTTG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CCTTG_Rev_preprocessed_SJ.out.tab

356.54 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

Subsample FASTQ (single-end)

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.fastq.gz

39.70 MB

fastqc

Directory

STAR

ultraplex_demux_CTAGA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.19 MB

ultraplex_demux_CTAGA_Rev_preprocessed.bam.bai

2.09 MB

ultraplex_demux_CTAGA_Rev_preprocessed.bam

276.34 MB

ultraplex_demux_CTAGA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CTAGA_Rev_preprocessed_SJ.out.tab

241.56 kB

Subsample FASTQ (single-end)

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.fastq.gz

39.31 MB

fastqc

Directory

STAR

ultraplex_demux_CGGCC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.22 MB

ultraplex_demux_CGGCC_Rev_preprocessed.bam.bai

2.33 MB

ultraplex_demux_CGGCC_Rev_preprocessed.bam

253.08 MB

ultraplex_demux_CGGCC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CGGCC_Rev_preprocessed_SJ.out.tab

320.17 kB

Subsample FASTQ (single-end)

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.fastq.gz

38.52 MB

fastqc

Directory

STAR

ultraplex_demux_CGCGG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.18 MB

ultraplex_demux_CGCGG_Rev_preprocessed.bam.bai

2.21 MB

ultraplex_demux_CGCGG_Rev_preprocessed.bam

241.09 MB

ultraplex_demux_CGCGG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CGCGG_Rev_preprocessed_SJ.out.tab

358.10 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.90 MB

Subsample FASTQ (single-end)

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.fastq.gz

37.01 MB

fastqc

Directory

STAR

ultraplex_demux_GAGAC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.86 MB

ultraplex_demux_GAGAC_Rev_preprocessed.bam.bai

2.46 MB

ultraplex_demux_GAGAC_Rev_preprocessed.bam

321.38 MB

ultraplex_demux_GAGAC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GAGAC_Rev_preprocessed_SJ.out.tab

389.67 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.91 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

Subsample FASTQ (single-end)

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.fastq.gz

38.28 MB

fastqc

Directory

STAR

ultraplex_demux_CTGAG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.73 MB

ultraplex_demux_CTGAG_Rev_preprocessed.bam.bai

2.39 MB

ultraplex_demux_CTGAG_Rev_preprocessed.bam

406.53 MB

ultraplex_demux_CTGAG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CTGAG_Rev_preprocessed_SJ.out.tab

308.17 kB

STAR

ultraplex_demux_GCCGC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

1.96 MB

ultraplex_demux_GCCGC_Rev_preprocessed.bam.bai

2.18 MB

ultraplex_demux_GCCGC_Rev_preprocessed.bam

260.41 MB

ultraplex_demux_GCCGC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCCGC_Rev_preprocessed_SJ.out.tab

261.08 kB

Samtools idxstats

idxstat_report.txt

5.83 kB

Subsample FASTQ (single-end)

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.fastq.gz

38.15 MB

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.fastq.gz

36.29 MB

fastqc

Directory

STAR

ultraplex_demux_GTCAA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.51 MB

ultraplex_demux_GTCAA_Rev_preprocessed.bam.bai

2.31 MB

ultraplex_demux_GTCAA_Rev_preprocessed.bam

312.87 MB

ultraplex_demux_GTCAA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GTCAA_Rev_preprocessed_SJ.out.tab

366.93 kB

Subsample FASTQ (single-end)

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.fastq.gz

38.27 MB

fastqc

Directory

STAR

ultraplex_demux_TAATC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

1.21 MB

ultraplex_demux_TAATC_Rev_preprocessed.bam.bai

2.11 MB

ultraplex_demux_TAATC_Rev_preprocessed.bam

91.81 MB

ultraplex_demux_TAATC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TAATC_Rev_preprocessed_SJ.out.tab

191.15 kB

Subsample FASTQ (single-end)

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.fastq.gz

37.93 MB

fastqc

Directory

STAR

ultraplex_demux_GGAAG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

4.14 MB

ultraplex_demux_GGAAG_Rev_preprocessed.bam.bai

2.41 MB

ultraplex_demux_GGAAG_Rev_preprocessed.bam

410.85 MB

ultraplex_demux_GGAAG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GGAAG_Rev_preprocessed_SJ.out.tab

272.42 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.97 MB

Subsample FASTQ (single-end)

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.fastq.gz

35.04 MB

fastqc

Directory

STAR

ultraplex_demux_GCTAT_Rev_preprocessed.bam

370.09 MB

ultraplex_demux_GCTAT_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.85 MB

ultraplex_demux_GCTAT_Rev_preprocessed.bam.bai

2.57 MB

ultraplex_demux_GCTAT_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCTAT_Rev_preprocessed_SJ.out.tab

397.41 kB

STAR

ultraplex_demux_GATCA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.80 MB

ultraplex_demux_GATCA_Rev_preprocessed.bam.bai

2.64 MB

ultraplex_demux_GATCA_Rev_preprocessed.bam

467.54 MB

ultraplex_demux_GATCA_Rev_preprocessed_stats.txt

1.82 kB

ultraplex_demux_GATCA_Rev_preprocessed_SJ.out.tab

414.17 kB

Subsample FASTQ (single-end)

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.fastq.gz

39.93 MB

fastqc

Directory

STAR

ultraplex_demux_GTTGG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

4.59 MB

ultraplex_demux_GTTGG_Rev_preprocessed.bam.bai

2.17 MB

ultraplex_demux_GTTGG_Rev_preprocessed.bam

268.88 MB

ultraplex_demux_GTTGG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GTTGG_Rev_preprocessed_SJ.out.tab

262.50 kB

STAR

ultraplex_demux_GACTG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.31 MB

ultraplex_demux_GACTG_Rev_preprocessed.bam.bai

2.44 MB

ultraplex_demux_GACTG_Rev_preprocessed.bam

278.76 MB

ultraplex_demux_GACTG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GACTG_Rev_preprocessed_SJ.out.tab

351.51 kB

Subsample FASTQ (single-end)

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.fastq.gz

39.66 MB

fastqc

Directory

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

1.23 MB

ultraplex_demux_CGTAA_Rev_preprocessed.bam.bai

2.12 MB

ultraplex_demux_CGTAA_Rev_preprocessed.bam

162.45 MB

ultraplex_demux_CGTAA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CGTAA_Rev_preprocessed_SJ.out.tab

280.66 kB

Subsample FASTQ (single-end)

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.fastq.gz

38.59 MB

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.fastq.gz

37.95 MB

fastqc

Directory

STAR

ultraplex_demux_GCATA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.08 MB

ultraplex_demux_GCATA_Rev_preprocessed.bam.bai

2.29 MB

ultraplex_demux_GCATA_Rev_preprocessed.bam

248.61 MB

ultraplex_demux_GCATA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCATA_Rev_preprocessed_SJ.out.tab

348.83 kB

Subsample FASTQ (single-end)

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.fastq.gz

40.12 MB

fastqc

Directory

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.07 MB

ultraplex_demux_GCGCG_Rev_preprocessed.bam.bai

2.27 MB

ultraplex_demux_GCGCG_Rev_preprocessed.bam

260.93 MB

ultraplex_demux_GCGCG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCGCG_Rev_preprocessed_SJ.out.tab

252.75 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

4.37 MB

ultraplex_demux_CTCTC_Rev_preprocessed.bam.bai

2.45 MB

ultraplex_demux_CTCTC_Rev_preprocessed.bam

409.66 MB

ultraplex_demux_CTCTC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CTCTC_Rev_preprocessed_SJ.out.tab

284.11 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.82 MB

Subsample FASTQ (single-end)

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.fastq.gz

37.75 MB

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.fastq.gz

40.25 MB

fastqc

Directory

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.72 MB

ultraplex_demux_GAAGT_Rev_preprocessed.bam.bai

2.50 MB

ultraplex_demux_GAAGT_Rev_preprocessed.bam

399.16 MB

ultraplex_demux_GAAGT_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GAAGT_Rev_preprocessed_SJ.out.tab

260.88 kB

Samtools idxstats

idxstat_report.txt

5.86 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.78 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

Subsample FASTQ (single-end)

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.fastq.gz

37.29 MB

fastqc

Directory

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.24 MB

ultraplex_demux_TAGCT_Rev_preprocessed.bam.bai

2.29 MB

ultraplex_demux_TAGCT_Rev_preprocessed.bam

311.15 MB

ultraplex_demux_TAGCT_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TAGCT_Rev_preprocessed_SJ.out.tab

230.92 kB

STAR

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.77 MB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.bam.bai

3.27 kB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.bam

1.04 MB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_SJ.out.tab

19.98 kB

STAR

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.72 MB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.bam

545.90 kB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_SJ.out.tab

135 B

Subsample FASTQ (single-end)

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.fastq.gz

39.01 MB

fastqc

Directory

STAR

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.40 MB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.bam.bai

1.73 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.bam

632.19 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_SJ.out.tab

15.84 kB

STAR

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.77 MB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.bam

708.97 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_SJ.out.tab

255 B

Subsample FASTQ (single-end)

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.fastq.gz

40.49 MB

fastqc

Directory

STAR

ultraplex_demux_TACGA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.10 MB

ultraplex_demux_TACGA_Rev_preprocessed.bam.bai

2.20 MB

ultraplex_demux_TACGA_Rev_preprocessed.bam

274.14 MB

ultraplex_demux_TACGA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TACGA_Rev_preprocessed_SJ.out.tab

256.69 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_ACGTC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ACGTC_Rev_preprocessed_rc.tab.gz

228.49 kB

ultraplex_demux_ACGTC_Rev_preprocessed_tpm.tab.gz

331.98 kB

ultraplex_demux_ACGTC_Rev_preprocessed_cpm.tab.gz

277.43 kB

ultraplex_demux_ACGTC_Rev_preprocessed_expressions.txt.gz

679.32 kB

STAR

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.22 MB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.bam

801.11 kB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_SJ.out.tab

145 B

STAR

ultraplex_demux_GTACC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

1.94 MB

ultraplex_demux_GTACC_Rev_preprocessed.bam.bai

2.41 MB

ultraplex_demux_GTACC_Rev_preprocessed.bam

266.51 MB

ultraplex_demux_GTACC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GTACC_Rev_preprocessed_SJ.out.tab

356.37 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_AGTCG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_AGTCG_Rev_preprocessed_rc.tab.gz

231.27 kB

ultraplex_demux_AGTCG_Rev_preprocessed_tpm.tab.gz

336.33 kB

ultraplex_demux_AGTCG_Rev_preprocessed_cpm.tab.gz

291.56 kB

ultraplex_demux_AGTCG_Rev_preprocessed_expressions.txt.gz

699.81 kB

STAR

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.58 MB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.bam.bai

3.20 kB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.bam

1.09 MB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_SJ.out.tab

21.30 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

STAR

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.58 MB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.bam

1.13 MB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_SJ.out.tab

299 B

STAR

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.66 MB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.bam.bai

2.42 kB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.bam

901.02 kB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_SJ.out.tab

18.63 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_ATATG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ATATG_Rev_preprocessed_rc.tab.gz

229.84 kB

ultraplex_demux_ATATG_Rev_preprocessed_tpm.tab.gz

334.51 kB

ultraplex_demux_ATATG_Rev_preprocessed_cpm.tab.gz

285.28 kB

ultraplex_demux_ATATG_Rev_preprocessed_expressions.txt.gz

690.48 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.06 MB

Samtools idxstats

idxstat_report.txt

5.87 kB

STAR

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.64 MB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.bam

564.22 kB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_SJ.out.tab

44 B

STAR

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.69 MB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.bam.bai

3.44 kB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.bam

1.07 MB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_SJ.out.tab

21.10 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_AGCTA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_AGCTA_Rev_preprocessed_rc.tab.gz

232.05 kB

ultraplex_demux_AGCTA_Rev_preprocessed_tpm.tab.gz

341.95 kB

ultraplex_demux_AGCTA_Rev_preprocessed_cpm.tab.gz

292.63 kB

ultraplex_demux_AGCTA_Rev_preprocessed_expressions.txt.gz

708.49 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.96 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.13 MB

STAR

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

40.01 MB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.bam

1.07 MB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_SJ.out.tab

258 B

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.99 MB

STAR

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

40.92 MB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.bam.bai

3.23 kB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.bam

1.06 MB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_SJ.out.tab

20.76 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_AGAGC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_AGAGC_Rev_preprocessed_rc.tab.gz

231.92 kB

ultraplex_demux_AGAGC_Rev_preprocessed_tpm.tab.gz

338.62 kB

ultraplex_demux_AGAGC_Rev_preprocessed_cpm.tab.gz

295.03 kB

ultraplex_demux_AGAGC_Rev_preprocessed_expressions.txt.gz

706.40 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

STAR

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.52 MB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.bam

868.21 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_SJ.out.tab

350 B

STAR

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.24 MB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.bam.bai

2.53 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.bam

783.04 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_SJ.out.tab

17.57 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CAACG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CAACG_Rev_preprocessed_rc.tab.gz

227.92 kB

ultraplex_demux_CAACG_Rev_preprocessed_tpm.tab.gz

333.40 kB

ultraplex_demux_CAACG_Rev_preprocessed_cpm.tab.gz

273.68 kB

ultraplex_demux_CAACG_Rev_preprocessed_expressions.txt.gz

676.37 kB

STAR

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.66 MB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.bam

824.67 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_SJ.out.tab

265 B

STAR

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.39 MB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.bam.bai

1.95 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.bam

697.14 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_SJ.out.tab

15.98 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.99 MB

featureCounts

featureCounts_rc.txt.summary

360 B

ultraplex_demux_ACTGA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ACTGA_Rev_preprocessed_rc.tab.gz

231.71 kB

ultraplex_demux_ACTGA_Rev_preprocessed_tpm.tab.gz

337.60 kB

ultraplex_demux_ACTGA_Rev_preprocessed_cpm.tab.gz

290.95 kB

ultraplex_demux_ACTGA_Rev_preprocessed_expressions.txt.gz

701.11 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.03 MB

STAR

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.76 MB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.bam

846.40 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_SJ.out.tab

86 B

STAR

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.36 MB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.bam.bai

3.02 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.bam

932.08 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_SJ.out.tab

16.45 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_ATGCA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ATGCA_Rev_preprocessed_rc.tab.gz

228.41 kB

ultraplex_demux_ATGCA_Rev_preprocessed_tpm.tab.gz

331.96 kB

ultraplex_demux_ATGCA_Rev_preprocessed_cpm.tab.gz

278.02 kB

ultraplex_demux_ATGCA_Rev_preprocessed_expressions.txt.gz

680.38 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

STAR

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.23 MB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.bam

1010.65 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_SJ.out.tab

254 B

STAR

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.12 MB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.bam.bai

2.52 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.bam

891.73 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_SJ.out.tab

19.69 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CAGTA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CAGTA_Rev_preprocessed_rc.tab.gz

228.17 kB

ultraplex_demux_CAGTA_Rev_preprocessed_tpm.tab.gz

329.04 kB

ultraplex_demux_CAGTA_Rev_preprocessed_cpm.tab.gz

278.74 kB

ultraplex_demux_CAGTA_Rev_preprocessed_expressions.txt.gz

677.79 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.12 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.99 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

STAR

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.72 MB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.bam.bai

2.52 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.bam

857.16 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_SJ.out.tab

17.54 kB

STAR

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.05 MB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.bam

870.41 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_SJ.out.tab

44 B

featureCounts

featureCounts_rc.txt.summary

360 B

ultraplex_demux_ACCAG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ACCAG_Rev_preprocessed_rc.tab.gz

233.39 kB

ultraplex_demux_ACCAG_Rev_preprocessed_tpm.tab.gz

345.64 kB

ultraplex_demux_ACCAG_Rev_preprocessed_cpm.tab.gz

297.94 kB

ultraplex_demux_ACCAG_Rev_preprocessed_expressions.txt.gz

718.15 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CATGC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CATGC_Rev_preprocessed_rc.tab.gz

229.87 kB

ultraplex_demux_CATGC_Rev_preprocessed_tpm.tab.gz

334.20 kB

ultraplex_demux_CATGC_Rev_preprocessed_cpm.tab.gz

284.79 kB

ultraplex_demux_CATGC_Rev_preprocessed_expressions.txt.gz

691.13 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.97 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

STAR

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.96 MB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.bam

858.31 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_SJ.out.tab

266 B

STAR

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.75 MB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.bam.bai

2.05 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.bam

683.38 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_SJ.out.tab

14.86 kB

STAR

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.55 MB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.bam

797.39 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_SJ.out.tab

214 B

STAR

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.19 MB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.bam.bai

1.98 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.bam

679.79 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_SJ.out.tab

14.54 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_ATTAC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ATTAC_Rev_preprocessed_rc.tab.gz

229.68 kB

ultraplex_demux_ATTAC_Rev_preprocessed_tpm.tab.gz

332.62 kB

ultraplex_demux_ATTAC_Rev_preprocessed_cpm.tab.gz

285.41 kB

ultraplex_demux_ATTAC_Rev_preprocessed_expressions.txt.gz

688.50 kB

STAR

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.08 MB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.bam

1.07 MB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_SJ.out.tab

264 B

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.14 MB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CCAAC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CCAAC_Rev_preprocessed_rc.tab.gz

228.04 kB

ultraplex_demux_CCAAC_Rev_preprocessed_tpm.tab.gz

328.97 kB

ultraplex_demux_CCAAC_Rev_preprocessed_cpm.tab.gz

277.29 kB

ultraplex_demux_CCAAC_Rev_preprocessed_expressions.txt.gz

675.09 kB

STAR

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.89 MB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.bam.bai

3.23 kB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.bam

965.00 kB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_SJ.out.tab

18.05 kB

STAR

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.25 MB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.bam

888.10 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_SJ.out.tab

214 B

STAR

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

40.02 MB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.bam.bai

2.18 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.bam

742.72 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_SJ.out.tab

16.71 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CCCCA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CCCCA_Rev_preprocessed_rc.tab.gz

226.51 kB

ultraplex_demux_CCCCA_Rev_preprocessed_tpm.tab.gz

322.06 kB

ultraplex_demux_CCCCA_Rev_preprocessed_cpm.tab.gz

274.38 kB

ultraplex_demux_CCCCA_Rev_preprocessed_expressions.txt.gz

665.16 kB

STAR

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.16 MB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.bam

547.14 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_SJ.out.tab

84 B

STAR

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.72 MB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.bam.bai

1.33 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.bam

407.60 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_SJ.out.tab

10.60 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CCTTG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CCTTG_Rev_preprocessed_rc.tab.gz

228.36 kB

ultraplex_demux_CCTTG_Rev_preprocessed_tpm.tab.gz

329.20 kB

ultraplex_demux_CCTTG_Rev_preprocessed_cpm.tab.gz

280.12 kB

ultraplex_demux_CCTTG_Rev_preprocessed_expressions.txt.gz

678.89 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.76 MB

STAR

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.93 MB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.bam

640.63 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_SJ.out.tab

171 B

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CTAGA_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_CTAGA_Rev_preprocessed_rc.tab.gz

225.40 kB

ultraplex_demux_CTAGA_Rev_preprocessed_tpm.tab.gz

316.16 kB

ultraplex_demux_CTAGA_Rev_preprocessed_cpm.tab.gz

271.90 kB

ultraplex_demux_CTAGA_Rev_preprocessed_expressions.txt.gz

654.65 kB

STAR

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.26 MB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.bam.bai

2.45 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.bam

819.13 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_SJ.out.tab

16.84 kB

STAR

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.87 MB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.bam

406.52 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_SJ.out.tab

130 B

STAR

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.10 MB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.bam.bai

1.40 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.bam

540.75 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_SJ.out.tab

15.46 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CGGCC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CGGCC_Rev_preprocessed_rc.tab.gz

228.09 kB

ultraplex_demux_CGGCC_Rev_preprocessed_tpm.tab.gz

328.43 kB

ultraplex_demux_CGGCC_Rev_preprocessed_cpm.tab.gz

278.81 kB

ultraplex_demux_CGGCC_Rev_preprocessed_expressions.txt.gz

676.40 kB

STAR

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.68 MB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.bam

687.38 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_SJ.out.tab

128 B

STAR

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.26 MB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.bam.bai

2.19 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.bam

687.74 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_SJ.out.tab

14.31 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CGCGG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CGCGG_Rev_preprocessed_rc.tab.gz

228.19 kB

ultraplex_demux_CGCGG_Rev_preprocessed_tpm.tab.gz

333.06 kB

ultraplex_demux_CGCGG_Rev_preprocessed_cpm.tab.gz

276.21 kB

ultraplex_demux_CGCGG_Rev_preprocessed_expressions.txt.gz

678.63 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.81 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.41 MB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.bam

526.87 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_SJ.out.tab

94 B

STAR

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.92 MB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.bam.bai

1.41 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.bam

467.92 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_SJ.out.tab

12.38 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GAGAC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GAGAC_Rev_preprocessed_rc.tab.gz

229.74 kB

ultraplex_demux_GAGAC_Rev_preprocessed_tpm.tab.gz

340.69 kB

ultraplex_demux_GAGAC_Rev_preprocessed_cpm.tab.gz

278.52 kB

ultraplex_demux_GAGAC_Rev_preprocessed_expressions.txt.gz

690.40 kB

STAR

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.05 MB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.bam

913.57 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_SJ.out.tab

84 B

STAR

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.02 MB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.bam.bai

1.71 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.bam

566.33 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_SJ.out.tab

13.05 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CTGAG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CTGAG_Rev_preprocessed_rc.tab.gz

228.12 kB

ultraplex_demux_CTGAG_Rev_preprocessed_tpm.tab.gz

327.80 kB

ultraplex_demux_CTGAG_Rev_preprocessed_cpm.tab.gz

279.97 kB

ultraplex_demux_CTGAG_Rev_preprocessed_expressions.txt.gz

676.97 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GCCGC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GCCGC_Rev_preprocessed_rc.tab.gz

226.45 kB

ultraplex_demux_GCCGC_Rev_preprocessed_tpm.tab.gz

322.50 kB

ultraplex_demux_GCCGC_Rev_preprocessed_cpm.tab.gz

273.91 kB

ultraplex_demux_GCCGC_Rev_preprocessed_expressions.txt.gz

663.66 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.99 MB

STAR

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.88 MB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.bam

1005.72 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_SJ.out.tab

279 B

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.89 MB

STAR

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.95 MB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.bam.bai

1.70 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.bam

558.66 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_SJ.out.tab

12.90 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GTCAA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GTCAA_Rev_preprocessed_rc.tab.gz

227.66 kB

ultraplex_demux_GTCAA_Rev_preprocessed_tpm.tab.gz

329.47 kB

ultraplex_demux_GTCAA_Rev_preprocessed_cpm.tab.gz

275.90 kB

ultraplex_demux_GTCAA_Rev_preprocessed_expressions.txt.gz

673.37 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

STAR

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.96 MB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.bam.bai

2.12 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.bam

700.25 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_SJ.out.tab

16.69 kB

STAR

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.60 MB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.bam

570.10 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_SJ.out.tab

139 B

STAR

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.06 MB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.bam.bai

1.64 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.bam

641.11 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_SJ.out.tab

15.28 kB

STAR

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.13 MB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.bam

923.14 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_SJ.out.tab

171 B

featureCounts

featureCounts_rc.txt.summary

357 B

ultraplex_demux_TAATC_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_TAATC_Rev_preprocessed_rc.tab.gz

220.98 kB

ultraplex_demux_TAATC_Rev_preprocessed_tpm.tab.gz

304.43 kB

ultraplex_demux_TAATC_Rev_preprocessed_cpm.tab.gz

253.94 kB

ultraplex_demux_TAATC_Rev_preprocessed_expressions.txt.gz

619.25 kB

STAR

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.28 MB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.bam

1.24 MB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_SJ.out.tab

310 B

STAR

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.29 MB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.bam.bai

3.20 kB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.bam

1.15 MB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_SJ.out.tab

14.84 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GGAAG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GGAAG_Rev_preprocessed_rc.tab.gz

228.58 kB

ultraplex_demux_GGAAG_Rev_preprocessed_tpm.tab.gz

327.09 kB

ultraplex_demux_GGAAG_Rev_preprocessed_cpm.tab.gz

283.33 kB

ultraplex_demux_GGAAG_Rev_preprocessed_expressions.txt.gz

679.87 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.74 MB

Samtools idxstats

idxstat_report.txt

5.86 kB

STAR

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

34.20 MB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.bam

660.85 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_SJ.out.tab

311 B

STAR

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

34.87 MB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.bam.bai

1.44 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.bam

495.30 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_SJ.out.tab

12.17 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GATCA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GATCA_Rev_preprocessed_rc.tab.gz

231.47 kB

ultraplex_demux_GATCA_Rev_preprocessed_tpm.tab.gz

339.49 kB

ultraplex_demux_GATCA_Rev_preprocessed_cpm.tab.gz

290.95 kB

ultraplex_demux_GATCA_Rev_preprocessed_expressions.txt.gz

702.94 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.96 MB

STAR

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.13 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.bam

647.21 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_SJ.out.tab

43 B

STAR

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.57 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.bam.bai

2.33 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.bam

737.01 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_SJ.out.tab

16.17 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GTTGG_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_GTTGG_Rev_preprocessed_rc.tab.gz

224.48 kB

ultraplex_demux_GTTGG_Rev_preprocessed_tpm.tab.gz

314.17 kB

ultraplex_demux_GTTGG_Rev_preprocessed_cpm.tab.gz

268.36 kB

ultraplex_demux_GTTGG_Rev_preprocessed_expressions.txt.gz

648.12 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.17 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.bam

441.47 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_SJ.out.tab

259 B

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.42 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.bam.bai

1.41 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.bam

549.53 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_SJ.out.tab

12.44 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CGTAA_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_CGTAA_Rev_preprocessed_rc.tab.gz

225.83 kB

ultraplex_demux_CGTAA_Rev_preprocessed_tpm.tab.gz

322.25 kB

ultraplex_demux_CGTAA_Rev_preprocessed_cpm.tab.gz

268.59 kB

ultraplex_demux_CGTAA_Rev_preprocessed_expressions.txt.gz

657.41 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.95 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.80 MB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GACTG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GACTG_Rev_preprocessed_rc.tab.gz

229.20 kB

ultraplex_demux_GACTG_Rev_preprocessed_tpm.tab.gz

334.82 kB

ultraplex_demux_GACTG_Rev_preprocessed_cpm.tab.gz

279.00 kB

ultraplex_demux_GACTG_Rev_preprocessed_expressions.txt.gz

685.58 kB

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.77 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.bam

667.34 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_SJ.out.tab

128 B

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.33 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.bam.bai

1.96 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.bam

677.47 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_SJ.out.tab

13.02 kB

STAR

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.83 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.bam

909.66 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_SJ.out.tab

128 B

STAR

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.69 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.bam.bai

1.86 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.bam

632.16 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_SJ.out.tab

15.85 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GCATA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GCATA_Rev_preprocessed_rc.tab.gz

227.66 kB

ultraplex_demux_GCATA_Rev_preprocessed_tpm.tab.gz

329.40 kB

ultraplex_demux_GCATA_Rev_preprocessed_cpm.tab.gz

275.92 kB

ultraplex_demux_GCATA_Rev_preprocessed_expressions.txt.gz

673.28 kB

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.12 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.bam

761.31 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_SJ.out.tab

43 B

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.61 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.bam.bai

3.05 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.bam

908.20 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_SJ.out.tab

17.05 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GCGCG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GCGCG_Rev_preprocessed_rc.tab.gz

227.48 kB

ultraplex_demux_GCGCG_Rev_preprocessed_tpm.tab.gz

323.15 kB

ultraplex_demux_GCGCG_Rev_preprocessed_cpm.tab.gz

279.41 kB

ultraplex_demux_GCGCG_Rev_preprocessed_expressions.txt.gz

671.30 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.82 MB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CTCTC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CTCTC_Rev_preprocessed_rc.tab.gz

228.19 kB

ultraplex_demux_CTCTC_Rev_preprocessed_tpm.tab.gz

325.88 kB

ultraplex_demux_CTCTC_Rev_preprocessed_cpm.tab.gz

280.81 kB

ultraplex_demux_CTCTC_Rev_preprocessed_expressions.txt.gz

675.91 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.98 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

5.84 kB

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.93 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.bam

663.66 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_SJ.out.tab

188 B

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.30 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.bam.bai

2.48 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.bam

813.24 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_SJ.out.tab

15.88 kB

STAR

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.39 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.bam

689.10 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_SJ.out.tab

225 B

STAR

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.77 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.bam.bai

2.81 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.bam

928.31 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_SJ.out.tab

18.53 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GAAGT_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GAAGT_Rev_preprocessed_rc.tab.gz

228.78 kB

ultraplex_demux_GAAGT_Rev_preprocessed_tpm.tab.gz

330.05 kB

ultraplex_demux_GAAGT_Rev_preprocessed_cpm.tab.gz

281.46 kB

ultraplex_demux_GAAGT_Rev_preprocessed_expressions.txt.gz

681.75 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.86 MB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GCTAT_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GCTAT_Rev_preprocessed_rc.tab.gz

231.32 kB

ultraplex_demux_GCTAT_Rev_preprocessed_tpm.tab.gz

339.81 kB

ultraplex_demux_GCTAT_Rev_preprocessed_cpm.tab.gz

290.49 kB

ultraplex_demux_GCTAT_Rev_preprocessed_expressions.txt.gz

702.42 kB

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.03 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.bam

946.87 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_SJ.out.tab

257 B

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.82 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.bam.bai

3.13 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.bam

868.39 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_SJ.out.tab

14.16 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_TAGCT_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_TAGCT_Rev_preprocessed_rc.tab.gz

226.02 kB

ultraplex_demux_TAGCT_Rev_preprocessed_tpm.tab.gz

318.64 kB

ultraplex_demux_TAGCT_Rev_preprocessed_cpm.tab.gz

273.99 kB

ultraplex_demux_TAGCT_Rev_preprocessed_expressions.txt.gz

660.16 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.98 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

STAR

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.67 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.bam.bai

2.26 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.bam

647.25 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_SJ.out.tab

13.46 kB

STAR

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.50 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.bam

1.10 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_SJ.out.tab

182 B

STAR

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

40.17 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.bam.bai

2.07 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.bam

692.37 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_SJ.out.tab

16.44 kB

STAR

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.86 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.bam

1.23 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_SJ.out.tab

260 B

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_TACGA_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_TACGA_Rev_preprocessed_rc.tab.gz

225.99 kB

ultraplex_demux_TACGA_Rev_preprocessed_tpm.tab.gz

320.13 kB

ultraplex_demux_TACGA_Rev_preprocessed_cpm.tab.gz

271.99 kB

ultraplex_demux_TACGA_Rev_preprocessed_expressions.txt.gz

659.21 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GTACC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GTACC_Rev_preprocessed_rc.tab.gz

227.79 kB

ultraplex_demux_GTACC_Rev_preprocessed_tpm.tab.gz

326.60 kB

ultraplex_demux_GTACC_Rev_preprocessed_cpm.tab.gz

277.86 kB

ultraplex_demux_GTACC_Rev_preprocessed_expressions.txt.gz

673.32 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.88 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed.fastq.gz

39.99 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_statistics.txt.gz

198 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed.fastq.gz

38.65 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_statistics.txt.gz

194 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed.fastq.gz

499.31 MB

ultraplex_demux_CTCTC_Rev_preprocessed_statistics.txt.gz

206 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed.fastq.gz

38.02 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed.fastq.gz

344.93 MB

ultraplex_demux_GACTG_Rev_preprocessed_statistics.txt.gz

203 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed.fastq.gz

286.43 MB

ultraplex_demux_GCATA_Rev_preprocessed_statistics.txt.gz

203 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed.fastq.gz

194.05 MB

ultraplex_demux_CGTAA_Rev_preprocessed_statistics.txt.gz

202 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed.fastq.gz

39.72 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed.fastq.gz

37.82 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed.fastq.gz

332.86 MB

ultraplex_demux_GCGCG_Rev_preprocessed_statistics.txt.gz

203 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed.fastq.gz

40.18 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_statistics.txt.gz

194 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed.fastq.gz

37.35 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed.fastq.gz

40.31 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_statistics.txt.gz

192 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed.fastq.gz

446.28 MB

ultraplex_demux_GAAGT_Rev_preprocessed_statistics.txt.gz

202 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed.fastq.gz

358.65 MB

ultraplex_demux_TAGCT_Rev_preprocessed_statistics.txt.gz

203 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed.fastq.gz

40.55 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed.fastq.gz

39.08 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_statistics.txt.gz

193 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed.fastq.gz

447.33 MB

ultraplex_demux_GCTAT_Rev_preprocessed_statistics.txt.gz

205 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed.fastq.gz

326.19 MB

ultraplex_demux_TACGA_Rev_preprocessed_statistics.txt.gz

202 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed.fastq.gz

332.59 MB

ultraplex_demux_GTACC_Rev_preprocessed_statistics.txt.gz

202 B

fastqc

Directory

STAR

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

261.87 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed.bam.bai

2.07 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed.bam

35.10 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

214.84 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed.bw

741.47 kB

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

320.12 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.95 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed.bam

33.88 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

148.11 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed.bw

587.67 kB

STAR

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

264.09 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.99 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed.bam

35.02 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

217.31 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed.bw

703.03 kB

STAR

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.29 MB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed.bam.bai

2.44 MB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed.bam

278.65 MB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_SJ.out.tab

352.26 kB

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

4.30 MB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed.bam.bai

2.45 MB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed.bam

409.55 MB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_SJ.out.tab

286.56 kB

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

1.23 MB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed.bam.bai

2.14 MB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed.bam

162.31 MB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_SJ.out.tab

280.86 kB

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

246.73 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.93 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed.bam

34.81 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

198.99 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed.bw

622.74 kB

STAR

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.07 MB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed.bam.bai

2.29 MB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed.bam

248.32 MB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_SJ.out.tab

347.00 kB

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

296.35 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed.bam.bai

2.04 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed.bam

35.73 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

135.38 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed.bw

619.45 kB

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

238.26 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.98 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed.bam

33.76 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

162.69 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed.bw

644.96 kB

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

315.91 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.94 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed.bam

33.77 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

140.83 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed.bw

547.48 kB

STAR

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

243.84 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed.bam.bai

2.09 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed.bam

36.82 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

220.59 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed.bw

837.47 kB

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.06 MB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed.bam.bai

2.29 MB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed.bam

260.83 MB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_SJ.out.tab

252.10 kB

STAR

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

232.95 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed.bam.bai

2.05 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed.bam

35.19 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

218.68 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed.bw

748.40 kB

STAR

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

236.48 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.89 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed.bam

34.15 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

168.83 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed.bw

544.46 kB

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

3.21 MB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed.bam.bai

2.29 MB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed.bam

311.20 MB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_SJ.out.tab

231.25 kB

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

3.66 MB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed.bam.bai

2.51 MB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed.bam

399.02 MB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_SJ.out.tab

261.01 kB

STAR

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.84 MB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed.bam.bai

2.57 MB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed.bam

369.84 MB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_SJ.out.tab

395.56 kB

STAR

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

1.94 MB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed.bam.bai

2.40 MB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed.bam

266.24 MB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_SJ.out.tab

357.93 kB

STAR

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.07 MB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed.bam.bai

2.20 MB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed.bam

274.05 MB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_SJ.out.tab

256.87 kB

HTSeq-count (CPM)

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.61 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

174.50 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

200.85 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

452.08 kB

HTSeq-count (CPM)

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

173.17 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

173.06 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

198.31 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

448.77 kB

HTSeq-count (CPM)

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.06 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

173.95 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

199.86 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

450.30 kB

HTSeq-count (CPM)

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

180.52 kB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_rc.tab.gz

180.41 kB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_cpm.tab.gz

220.40 kB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_expressions.txt.gz

480.05 kB

HTSeq-count (CPM)

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.38 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

174.28 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

200.95 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

451.78 kB

HTSeq-count (CPM)

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

183.68 kB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_rc.tab.gz

183.56 kB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_cpm.tab.gz

230.64 kB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_expressions.txt.gz

494.08 kB

HTSeq-count (CPM)

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

173.56 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

173.45 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

199.09 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

449.54 kB

HTSeq-count (CPM)

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

182.87 kB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_rc.tab.gz

182.75 kB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_cpm.tab.gz

231.48 kB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_expressions.txt.gz

495.50 kB

HTSeq-count (CPM)

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.27 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

174.16 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

200.84 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

452.07 kB

HTSeq-count (CPM)

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

172.73 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

172.63 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

196.89 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

446.80 kB

HTSeq-count (CPM)

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

181.82 kB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_rc.tab.gz

181.71 kB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_cpm.tab.gz

225.92 kB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_expressions.txt.gz

487.35 kB

HTSeq-count (CPM)

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

175.26 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

175.15 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

202.91 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

454.73 kB

HTSeq-count (CPM)

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.29 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

174.18 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

200.69 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

451.73 kB

HTSeq-count (CPM)

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

172.89 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

172.79 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

197.95 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

448.37 kB

HTSeq-count (CPM)

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

182.11 kB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_rc.tab.gz

181.99 kB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_cpm.tab.gz

229.32 kB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_expressions.txt.gz

492.05 kB

HTSeq-count (CPM)

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

180.99 kB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_rc.tab.gz

180.88 kB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_cpm.tab.gz

224.88 kB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_expressions.txt.gz

485.73 kB

HTSeq-count (CPM)

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

183.31 kB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_rc.tab.gz

183.19 kB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_cpm.tab.gz

231.44 kB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_expressions.txt.gz

495.54 kB

HTSeq-count (CPM)

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

185.48 kB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_rc.tab.gz

185.36 kB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_cpm.tab.gz

238.30 kB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_expressions.txt.gz

505.85 kB

HTSeq-count (CPM)

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

182.45 kB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_rc.tab.gz

182.33 kB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_cpm.tab.gz

228.82 kB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_expressions.txt.gz

491.49 kB

HTSeq-count (CPM)

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

180.85 kB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_rc.tab.gz

180.74 kB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_cpm.tab.gz

223.83 kB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_expressions.txt.gz

484.41 kB

DESeq2

de_file.tab.gz

449.69 kB

diffexp_deseq2.tab.gz

682.35 kB

count_matrix.tab.gz

271.35 kB

DESeq2

de_file.tab.gz

425.30 kB

diffexp_deseq2.tab.gz

645.46 kB

count_matrix.tab.gz

154.75 kB

DESeq2

de_file.tab.gz

430.26 kB

diffexp_deseq2.tab.gz

648.64 kB

count_matrix.tab.gz

151.46 kB

DESeq2

de_file.tab.gz

420.55 kB

diffexp_deseq2.tab.gz

637.47 kB

count_matrix.tab.gz

152.60 kB

DESeq2

de_file.tab.gz

424.27 kB

diffexp_deseq2.tab.gz

643.56 kB

count_matrix.tab.gz

160.06 kB

DESeq2

de_file.tab.gz

425.54 kB

diffexp_deseq2.tab.gz

643.70 kB

count_matrix.tab.gz

154.76 kB

DESeq2

de_file.tab.gz

392.85 kB

diffexp_deseq2.tab.gz

594.78 kB

count_matrix.tab.gz

140.42 kB

DESeq2

de_file.tab.gz

389.84 kB

diffexp_deseq2.tab.gz

589.30 kB

count_matrix.tab.gz

139.92 kB

DESeq2

de_file.tab.gz

415.84 kB

diffexp_deseq2.tab.gz

628.64 kB

count_matrix.tab.gz

147.61 kB

DESeq2

de_file.tab.gz

396.44 kB

diffexp_deseq2.tab.gz

601.03 kB

count_matrix.tab.gz

142.08 kB

DESeq2

de_file.tab.gz

399.75 kB

diffexp_deseq2.tab.gz

605.16 kB

count_matrix.tab.gz

147.83 kB

DESeq2

de_file.tab.gz

394.92 kB

diffexp_deseq2.tab.gz

597.33 kB

count_matrix.tab.gz

138.44 kB

ultraplex_demux_ACGTC_Rev

FASTQ file (single-end)

ultraplex_demux_ACGTC_Rev.fastq.gz

323.46 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ACGTC_Rev_fastqc.zip

872.61 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

BBDuk (single-end)

ultraplex_demux_ACGTC_Rev_preprocessed.fastq.gz

325.62 MB

ultraplex_demux_ACGTC_Rev_statistics.txt.gz

439 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.fastq.gz

36.65 MB

fastqc

Directory

STAR

ultraplex_demux_ACGTC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.10 MB

ultraplex_demux_ACGTC_Rev_preprocessed.bam.bai

2.36 MB

ultraplex_demux_ACGTC_Rev_preprocessed.bam

288.17 MB

ultraplex_demux_ACGTC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_ACGTC_Rev_preprocessed_SJ.out.tab

377.29 kB

STAR

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.40 MB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.bam.bai

1.73 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.bam

632.19 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_SJ.out.tab

15.84 kB

STAR

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.77 MB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled.bam

708.97 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ACGTC_Rev_preprocessed_downsampled_SJ.out.tab

255 B

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_ACGTC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ACGTC_Rev_preprocessed_rc.tab.gz

228.49 kB

ultraplex_demux_ACGTC_Rev_preprocessed_tpm.tab.gz

331.98 kB

ultraplex_demux_ACGTC_Rev_preprocessed_cpm.tab.gz

277.43 kB

ultraplex_demux_ACGTC_Rev_preprocessed_expressions.txt.gz

679.32 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.06 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_AGAGC_Rev

FASTQ file (single-end)

ultraplex_demux_AGAGC_Rev.fastq.gz

568.15 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_AGAGC_Rev_fastqc.zip

859.30 kB

BBDuk (single-end)

ultraplex_demux_AGAGC_Rev_preprocessed.fastq.gz

579.38 MB

ultraplex_demux_AGAGC_Rev_statistics.txt.gz

464 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.fastq.gz

40.32 MB

fastqc

Directory

STAR

ultraplex_demux_AGAGC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.39 MB

ultraplex_demux_AGAGC_Rev_preprocessed.bam.bai

2.63 MB

ultraplex_demux_AGAGC_Rev_preprocessed.bam

458.92 MB

ultraplex_demux_AGAGC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_AGAGC_Rev_preprocessed_SJ.out.tab

403.04 kB

STAR

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.64 MB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.bam

564.22 kB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_SJ.out.tab

44 B

STAR

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.69 MB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.bam.bai

3.44 kB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled.bam

1.07 MB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_AGAGC_Rev_preprocessed_downsampled_SJ.out.tab

21.10 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_AGAGC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_AGAGC_Rev_preprocessed_rc.tab.gz

231.92 kB

ultraplex_demux_AGAGC_Rev_preprocessed_tpm.tab.gz

338.62 kB

ultraplex_demux_AGAGC_Rev_preprocessed_cpm.tab.gz

295.03 kB

ultraplex_demux_AGAGC_Rev_preprocessed_expressions.txt.gz

706.40 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.03 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_ACCAG_Rev

FASTQ file (single-end)

ultraplex_demux_ACCAG_Rev.fastq.gz

689.24 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ACCAG_Rev_fastqc.zip

865.77 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_ACCAG_Rev_preprocessed.fastq.gz

688.51 MB

ultraplex_demux_ACCAG_Rev_statistics.txt.gz

453 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.fastq.gz

38.50 MB

fastqc

Directory

STAR

ultraplex_demux_ACCAG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

5.02 MB

ultraplex_demux_ACCAG_Rev_preprocessed.bam.bai

2.81 MB

ultraplex_demux_ACCAG_Rev_preprocessed.bam

603.59 MB

ultraplex_demux_ACCAG_Rev_preprocessed_stats.txt

1.82 kB

ultraplex_demux_ACCAG_Rev_preprocessed_SJ.out.tab

551.80 kB

Samtools idxstats

idxstat_report.txt

5.88 kB

STAR

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.23 MB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.bam

1010.65 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_SJ.out.tab

254 B

STAR

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.12 MB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.bam.bai

2.52 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled.bam

891.73 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ACCAG_Rev_preprocessed_downsampled_SJ.out.tab

19.69 kB

featureCounts

featureCounts_rc.txt.summary

360 B

ultraplex_demux_ACCAG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ACCAG_Rev_preprocessed_rc.tab.gz

233.39 kB

ultraplex_demux_ACCAG_Rev_preprocessed_tpm.tab.gz

345.64 kB

ultraplex_demux_ACCAG_Rev_preprocessed_cpm.tab.gz

297.94 kB

ultraplex_demux_ACCAG_Rev_preprocessed_expressions.txt.gz

718.15 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.14 MB

ultraplex_demux_AGCTA_Rev

FASTQ file (single-end)

ultraplex_demux_AGCTA_Rev.fastq.gz

562.51 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_AGCTA_Rev_fastqc.zip

864.44 kB

Samtools idxstats

idxstat_report.txt

5.88 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_AGCTA_Rev_preprocessed.fastq.gz

570.18 MB

ultraplex_demux_AGCTA_Rev_statistics.txt.gz

441 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.fastq.gz

38.12 MB

fastqc

Directory

STAR

ultraplex_demux_AGCTA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

5.89 MB

ultraplex_demux_AGCTA_Rev_preprocessed.bam.bai

2.75 MB

ultraplex_demux_AGCTA_Rev_preprocessed.bam

503.40 MB

ultraplex_demux_AGCTA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_AGCTA_Rev_preprocessed_SJ.out.tab

505.15 kB

STAR

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.22 MB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.bam

801.11 kB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_SJ.out.tab

145 B

STAR

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.58 MB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.bam.bai

3.20 kB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled.bam

1.09 MB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_AGCTA_Rev_preprocessed_downsampled_SJ.out.tab

21.30 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_AGCTA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_AGCTA_Rev_preprocessed_rc.tab.gz

232.05 kB

ultraplex_demux_AGCTA_Rev_preprocessed_tpm.tab.gz

341.95 kB

ultraplex_demux_AGCTA_Rev_preprocessed_cpm.tab.gz

292.63 kB

ultraplex_demux_AGCTA_Rev_preprocessed_expressions.txt.gz

708.49 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.13 MB

ultraplex_demux_ACTGA_Rev

FASTQ file (single-end)

ultraplex_demux_ACTGA_Rev.fastq.gz

618.13 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ACTGA_Rev_fastqc.zip

859.79 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_ACTGA_Rev_preprocessed.fastq.gz

636.09 MB

ultraplex_demux_ACTGA_Rev_statistics.txt.gz

440 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.fastq.gz

41.55 MB

fastqc

Directory

STAR

ultraplex_demux_ACTGA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.86 MB

ultraplex_demux_ACTGA_Rev_preprocessed.bam.bai

2.57 MB

ultraplex_demux_ACTGA_Rev_preprocessed.bam

512.81 MB

ultraplex_demux_ACTGA_Rev_preprocessed_stats.txt

1.82 kB

ultraplex_demux_ACTGA_Rev_preprocessed_SJ.out.tab

441.78 kB

STAR

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

40.01 MB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.bam

1.07 MB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_SJ.out.tab

258 B

STAR

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

40.92 MB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.bam.bai

3.23 kB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled.bam

1.06 MB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ACTGA_Rev_preprocessed_downsampled_SJ.out.tab

20.76 kB

featureCounts

featureCounts_rc.txt.summary

360 B

ultraplex_demux_ACTGA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ACTGA_Rev_preprocessed_rc.tab.gz

231.71 kB

ultraplex_demux_ACTGA_Rev_preprocessed_tpm.tab.gz

337.60 kB

ultraplex_demux_ACTGA_Rev_preprocessed_cpm.tab.gz

290.95 kB

ultraplex_demux_ACTGA_Rev_preprocessed_expressions.txt.gz

701.11 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.97 MB

ultraplex_demux_AGTCG_Rev

FASTQ file (single-end)

ultraplex_demux_AGTCG_Rev.fastq.gz

598.33 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_AGTCG_Rev_fastqc.zip

861.48 kB

BBDuk (single-end)

ultraplex_demux_AGTCG_Rev_preprocessed.fastq.gz

610.50 MB

ultraplex_demux_AGTCG_Rev_statistics.txt.gz

440 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.fastq.gz

38.37 MB

fastqc

Directory

STAR

ultraplex_demux_AGTCG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

5.08 MB

ultraplex_demux_AGTCG_Rev_preprocessed.bam.bai

2.61 MB

ultraplex_demux_AGTCG_Rev_preprocessed.bam

527.98 MB

ultraplex_demux_AGTCG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_AGTCG_Rev_preprocessed_SJ.out.tab

351.16 kB

STAR

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.77 MB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.bam.bai

3.27 kB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.bam

1.04 MB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_SJ.out.tab

19.98 kB

STAR

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.72 MB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled.bam

545.90 kB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_AGTCG_Rev_preprocessed_downsampled_SJ.out.tab

135 B

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_AGTCG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_AGTCG_Rev_preprocessed_rc.tab.gz

231.27 kB

ultraplex_demux_AGTCG_Rev_preprocessed_tpm.tab.gz

336.33 kB

ultraplex_demux_AGTCG_Rev_preprocessed_cpm.tab.gz

291.56 kB

ultraplex_demux_AGTCG_Rev_preprocessed_expressions.txt.gz

699.81 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.99 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_ATATG_Rev

FASTQ file (single-end)

ultraplex_demux_ATATG_Rev.fastq.gz

464.72 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ATATG_Rev_fastqc.zip

866.99 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_ATATG_Rev_preprocessed.fastq.gz

461.68 MB

ultraplex_demux_ATATG_Rev_statistics.txt.gz

447 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.fastq.gz

40.10 MB

fastqc

Directory

STAR

ultraplex_demux_ATATG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.23 MB

ultraplex_demux_ATATG_Rev_preprocessed.bam.bai

2.63 MB

ultraplex_demux_ATATG_Rev_preprocessed.bam

377.87 MB

ultraplex_demux_ATATG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_ATATG_Rev_preprocessed_SJ.out.tab

453.39 kB

STAR

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.58 MB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.bam

1.13 MB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_SJ.out.tab

299 B

STAR

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.66 MB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.bam.bai

2.42 kB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled.bam

901.02 kB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ATATG_Rev_preprocessed_downsampled_SJ.out.tab

18.63 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_ATATG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ATATG_Rev_preprocessed_rc.tab.gz

229.84 kB

ultraplex_demux_ATATG_Rev_preprocessed_tpm.tab.gz

334.51 kB

ultraplex_demux_ATATG_Rev_preprocessed_cpm.tab.gz

285.28 kB

ultraplex_demux_ATATG_Rev_preprocessed_expressions.txt.gz

690.48 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.96 MB

ultraplex_demux_CAACG_Rev

FASTQ file (single-end)

ultraplex_demux_CAACG_Rev.fastq.gz

266.46 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CAACG_Rev_fastqc.zip

872.50 kB

BBDuk (single-end)

ultraplex_demux_CAACG_Rev_preprocessed.fastq.gz

265.97 MB

ultraplex_demux_CAACG_Rev_statistics.txt.gz

400 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.fastq.gz

37.63 MB

fastqc

Directory

STAR

ultraplex_demux_CAACG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.11 MB

ultraplex_demux_CAACG_Rev_preprocessed.bam.bai

2.34 MB

ultraplex_demux_CAACG_Rev_preprocessed.bam

236.49 MB

ultraplex_demux_CAACG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CAACG_Rev_preprocessed_SJ.out.tab

377.82 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

STAR

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.52 MB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.bam

868.21 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_SJ.out.tab

350 B

STAR

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.24 MB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.bam.bai

2.53 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled.bam

783.04 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CAACG_Rev_preprocessed_downsampled_SJ.out.tab

17.57 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CAACG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CAACG_Rev_preprocessed_rc.tab.gz

227.92 kB

ultraplex_demux_CAACG_Rev_preprocessed_tpm.tab.gz

333.40 kB

ultraplex_demux_CAACG_Rev_preprocessed_cpm.tab.gz

273.68 kB

ultraplex_demux_CAACG_Rev_preprocessed_expressions.txt.gz

676.37 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.99 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_CAGTA_Rev

FASTQ file (single-end)

ultraplex_demux_CAGTA_Rev.fastq.gz

378.92 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CAGTA_Rev_fastqc.zip

860.31 kB

BBDuk (single-end)

ultraplex_demux_CAGTA_Rev_preprocessed.fastq.gz

389.04 MB

ultraplex_demux_CAGTA_Rev_statistics.txt.gz

410 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.fastq.gz

38.91 MB

fastqc

Directory

STAR

ultraplex_demux_CAGTA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.66 MB

ultraplex_demux_CAGTA_Rev_preprocessed.bam.bai

2.35 MB

ultraplex_demux_CAGTA_Rev_preprocessed.bam

326.66 MB

ultraplex_demux_CAGTA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CAGTA_Rev_preprocessed_SJ.out.tab

325.13 kB

STAR

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.76 MB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.bam

846.40 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_SJ.out.tab

86 B

STAR

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.36 MB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.bam.bai

3.02 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled.bam

932.08 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CAGTA_Rev_preprocessed_downsampled_SJ.out.tab

16.45 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CAGTA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CAGTA_Rev_preprocessed_rc.tab.gz

228.17 kB

ultraplex_demux_CAGTA_Rev_preprocessed_tpm.tab.gz

329.04 kB

ultraplex_demux_CAGTA_Rev_preprocessed_cpm.tab.gz

278.74 kB

ultraplex_demux_CAGTA_Rev_preprocessed_expressions.txt.gz

677.79 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.99 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_ATGCA_Rev

FASTQ file (single-end)

ultraplex_demux_ATGCA_Rev.fastq.gz

395.04 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ATGCA_Rev_fastqc.zip

871.11 kB

BBDuk (single-end)

ultraplex_demux_ATGCA_Rev_preprocessed.fastq.gz

405.52 MB

ultraplex_demux_ATGCA_Rev_statistics.txt.gz

434 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.fastq.gz

36.68 MB

fastqc

Directory

STAR

ultraplex_demux_ATGCA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

5.02 MB

ultraplex_demux_ATGCA_Rev_preprocessed.bam.bai

2.42 MB

ultraplex_demux_ATGCA_Rev_preprocessed.bam

363.45 MB

ultraplex_demux_ATGCA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_ATGCA_Rev_preprocessed_SJ.out.tab

441.10 kB

STAR

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.66 MB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.bam

824.67 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_SJ.out.tab

265 B

STAR

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.39 MB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.bam.bai

1.95 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled.bam

697.14 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ATGCA_Rev_preprocessed_downsampled_SJ.out.tab

15.98 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_ATGCA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ATGCA_Rev_preprocessed_rc.tab.gz

228.41 kB

ultraplex_demux_ATGCA_Rev_preprocessed_tpm.tab.gz

331.96 kB

ultraplex_demux_ATGCA_Rev_preprocessed_cpm.tab.gz

278.02 kB

ultraplex_demux_ATGCA_Rev_preprocessed_expressions.txt.gz

680.38 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.12 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_ATTAC_Rev

FASTQ file (single-end)

ultraplex_demux_ATTAC_Rev.fastq.gz

522.21 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_ATTAC_Rev_fastqc.zip

871.21 kB

Samtools idxstats

idxstat_report.txt

5.86 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_ATTAC_Rev_preprocessed.fastq.gz

523.80 MB

ultraplex_demux_ATTAC_Rev_statistics.txt.gz

422 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.fastq.gz

37.02 MB

fastqc

Directory

STAR

ultraplex_demux_ATTAC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

4.46 MB

ultraplex_demux_ATTAC_Rev_preprocessed.bam.bai

2.53 MB

ultraplex_demux_ATTAC_Rev_preprocessed.bam

479.07 MB

ultraplex_demux_ATTAC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_ATTAC_Rev_preprocessed_SJ.out.tab

405.97 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.08 MB

STAR

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.96 MB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.bam

858.31 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_SJ.out.tab

266 B

STAR

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.75 MB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.bam.bai

2.05 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled.bam

683.38 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_ATTAC_Rev_preprocessed_downsampled_SJ.out.tab

14.86 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_ATTAC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_ATTAC_Rev_preprocessed_rc.tab.gz

229.68 kB

ultraplex_demux_ATTAC_Rev_preprocessed_tpm.tab.gz

332.62 kB

ultraplex_demux_ATTAC_Rev_preprocessed_cpm.tab.gz

285.41 kB

ultraplex_demux_ATTAC_Rev_preprocessed_expressions.txt.gz

688.50 kB

ultraplex_demux_CATGC_Rev

FASTQ file (single-end)

ultraplex_demux_CATGC_Rev.fastq.gz

450.30 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CATGC_Rev_fastqc.zip

862.00 kB

BBDuk (single-end)

ultraplex_demux_CATGC_Rev_preprocessed.fastq.gz

458.25 MB

ultraplex_demux_CATGC_Rev_statistics.txt.gz

425 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.fastq.gz

39.19 MB

fastqc

Directory

STAR

ultraplex_demux_CATGC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.96 MB

ultraplex_demux_CATGC_Rev_preprocessed.bam.bai

2.47 MB

ultraplex_demux_CATGC_Rev_preprocessed.bam

376.98 MB

ultraplex_demux_CATGC_Rev_preprocessed_stats.txt

1.82 kB

ultraplex_demux_CATGC_Rev_preprocessed_SJ.out.tab

310.45 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.96 MB

STAR

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.72 MB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.bam.bai

2.52 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.bam

857.16 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_SJ.out.tab

17.54 kB

STAR

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.05 MB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CATGC_Rev_preprocessed_downsampled.bam

870.41 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CATGC_Rev_preprocessed_downsampled_SJ.out.tab

44 B

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CATGC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CATGC_Rev_preprocessed_rc.tab.gz

229.87 kB

ultraplex_demux_CATGC_Rev_preprocessed_tpm.tab.gz

334.20 kB

ultraplex_demux_CATGC_Rev_preprocessed_cpm.tab.gz

284.79 kB

ultraplex_demux_CATGC_Rev_preprocessed_expressions.txt.gz

691.13 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_CCAAC_Rev

FASTQ file (single-end)

ultraplex_demux_CCAAC_Rev.fastq.gz

337.73 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CCAAC_Rev_fastqc.zip

873.64 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_CCAAC_Rev_preprocessed.fastq.gz

340.06 MB

ultraplex_demux_CCAAC_Rev_statistics.txt.gz

435 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.fastq.gz

38.48 MB

fastqc

Directory

STAR

ultraplex_demux_CCAAC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.28 MB

ultraplex_demux_CCAAC_Rev_preprocessed.bam.bai

2.36 MB

ultraplex_demux_CCAAC_Rev_preprocessed.bam

295.63 MB

ultraplex_demux_CCAAC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CCAAC_Rev_preprocessed_SJ.out.tab

325.22 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.86 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

STAR

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.55 MB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.bam

797.39 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_SJ.out.tab

214 B

STAR

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.19 MB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.bam.bai

1.98 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled.bam

679.79 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CCAAC_Rev_preprocessed_downsampled_SJ.out.tab

14.54 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CCAAC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CCAAC_Rev_preprocessed_rc.tab.gz

228.04 kB

ultraplex_demux_CCAAC_Rev_preprocessed_tpm.tab.gz

328.97 kB

ultraplex_demux_CCAAC_Rev_preprocessed_cpm.tab.gz

277.29 kB

ultraplex_demux_CCAAC_Rev_preprocessed_expressions.txt.gz

675.09 kB

ultraplex_demux_CCCCA_Rev

FASTQ file (single-end)

ultraplex_demux_CCCCA_Rev.fastq.gz

314.85 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CCCCA_Rev_fastqc.zip

865.36 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.78 MB

BBDuk (single-end)

ultraplex_demux_CCCCA_Rev_preprocessed.fastq.gz

318.32 MB

ultraplex_demux_CCCCA_Rev_statistics.txt.gz

407 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.fastq.gz

38.46 MB

fastqc

Directory

STAR

ultraplex_demux_CCCCA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.05 MB

ultraplex_demux_CCCCA_Rev_preprocessed.bam.bai

2.35 MB

ultraplex_demux_CCCCA_Rev_preprocessed.bam

283.01 MB

ultraplex_demux_CCCCA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CCCCA_Rev_preprocessed_SJ.out.tab

248.54 kB

STAR

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.08 MB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.bam

1.07 MB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_SJ.out.tab

264 B

STAR

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.89 MB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.bam.bai

3.23 kB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled.bam

965.00 kB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CCCCA_Rev_preprocessed_downsampled_SJ.out.tab

18.05 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CCCCA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CCCCA_Rev_preprocessed_rc.tab.gz

226.51 kB

ultraplex_demux_CCCCA_Rev_preprocessed_tpm.tab.gz

322.06 kB

ultraplex_demux_CCCCA_Rev_preprocessed_cpm.tab.gz

274.38 kB

ultraplex_demux_CCCCA_Rev_preprocessed_expressions.txt.gz

665.16 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_GCATA_Rev

QoRTs QC

qorts_report.zip

8.98 MB

qorts_output

Directory

FASTQ file (single-end)

ultraplex_demux_GCATA_Rev.fastq.gz

286.82 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GCATA_Rev_fastqc.zip

875.96 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

BBDuk (single-end)

ultraplex_demux_GCATA_Rev_preprocessed.fastq.gz

285.11 MB

ultraplex_demux_GCATA_Rev_statistics.txt.gz

407 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.fastq.gz

37.95 MB

fastqc

Directory

STAR

ultraplex_demux_GCATA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.08 MB

ultraplex_demux_GCATA_Rev_preprocessed.bam.bai

2.29 MB

ultraplex_demux_GCATA_Rev_preprocessed.bam

248.61 MB

ultraplex_demux_GCATA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCATA_Rev_preprocessed_SJ.out.tab

348.83 kB

STAR

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.83 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.bam

909.66 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_SJ.out.tab

128 B

STAR

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.69 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.bam.bai

1.86 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled.bam

632.16 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_SJ.out.tab

15.85 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GCATA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GCATA_Rev_preprocessed_rc.tab.gz

227.66 kB

ultraplex_demux_GCATA_Rev_preprocessed_tpm.tab.gz

329.40 kB

ultraplex_demux_GCATA_Rev_preprocessed_cpm.tab.gz

275.92 kB

ultraplex_demux_GCATA_Rev_preprocessed_expressions.txt.gz

673.28 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed.fastq.gz

38.02 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed.fastq.gz

286.43 MB

ultraplex_demux_GCATA_Rev_preprocessed_statistics.txt.gz

203 B

fastqc

Directory

STAR

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

264.09 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.99 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed.bam

35.02 MB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

217.31 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed.bw

703.03 kB

STAR

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.07 MB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed.bam.bai

2.29 MB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed.bam

248.32 MB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_SJ.out.tab

347.00 kB

HTSeq-count (CPM)

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.06 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

173.95 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

199.86 kB

ultraplex_demux_GCATA_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

450.30 kB

HTSeq-count (CPM)

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

181.82 kB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_rc.tab.gz

181.71 kB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_cpm.tab.gz

225.92 kB

ultraplex_demux_GCATA_Rev_preprocessed_preprocessed_expressions.txt.gz

487.35 kB

ultraplex_demux_CCTTG_Rev

FASTQ file (single-end)

ultraplex_demux_CCTTG_Rev.fastq.gz

341.28 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CCTTG_Rev_fastqc.zip

869.20 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_CCTTG_Rev_preprocessed.fastq.gz

338.33 MB

ultraplex_demux_CCTTG_Rev_statistics.txt.gz

443 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.fastq.gz

40.39 MB

fastqc

Directory

STAR

ultraplex_demux_CCTTG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.35 MB

ultraplex_demux_CCTTG_Rev_preprocessed.bam.bai

2.39 MB

ultraplex_demux_CCTTG_Rev_preprocessed.bam

273.28 MB

ultraplex_demux_CCTTG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CCTTG_Rev_preprocessed_SJ.out.tab

356.54 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

STAR

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.25 MB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.bam

888.10 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_SJ.out.tab

214 B

STAR

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

40.02 MB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.bam.bai

2.18 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled.bam

742.72 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CCTTG_Rev_preprocessed_downsampled_SJ.out.tab

16.71 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CCTTG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CCTTG_Rev_preprocessed_rc.tab.gz

228.36 kB

ultraplex_demux_CCTTG_Rev_preprocessed_tpm.tab.gz

329.20 kB

ultraplex_demux_CCTTG_Rev_preprocessed_cpm.tab.gz

280.12 kB

ultraplex_demux_CCTTG_Rev_preprocessed_expressions.txt.gz

678.89 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.76 MB

ultraplex_demux_CGCGG_Rev

FASTQ file (single-end)

ultraplex_demux_CGCGG_Rev.fastq.gz

284.00 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CGCGG_Rev_fastqc.zip

867.82 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_CGCGG_Rev_preprocessed.fastq.gz

290.10 MB

ultraplex_demux_CGCGG_Rev_statistics.txt.gz

427 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.fastq.gz

39.31 MB

fastqc

Directory

STAR

ultraplex_demux_CGCGG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.18 MB

ultraplex_demux_CGCGG_Rev_preprocessed.bam.bai

2.21 MB

ultraplex_demux_CGCGG_Rev_preprocessed.bam

241.09 MB

ultraplex_demux_CGCGG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CGCGG_Rev_preprocessed_SJ.out.tab

358.10 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.90 MB

STAR

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.87 MB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.bam

406.52 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_SJ.out.tab

130 B

STAR

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.10 MB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.bam.bai

1.40 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled.bam

540.75 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CGCGG_Rev_preprocessed_downsampled_SJ.out.tab

15.46 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CGCGG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CGCGG_Rev_preprocessed_rc.tab.gz

228.19 kB

ultraplex_demux_CGCGG_Rev_preprocessed_tpm.tab.gz

333.06 kB

ultraplex_demux_CGCGG_Rev_preprocessed_cpm.tab.gz

276.21 kB

ultraplex_demux_CGCGG_Rev_preprocessed_expressions.txt.gz

678.63 kB

ultraplex_demux_CGGCC_Rev

FASTQ file (single-end)

ultraplex_demux_CGGCC_Rev.fastq.gz

294.75 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CGGCC_Rev_fastqc.zip

880.96 kB

Samtools idxstats

idxstat_report.txt

5.86 kB

BBDuk (single-end)

ultraplex_demux_CGGCC_Rev_preprocessed.fastq.gz

291.85 MB

ultraplex_demux_CGGCC_Rev_statistics.txt.gz

451 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.fastq.gz

39.70 MB

fastqc

Directory

STAR

ultraplex_demux_CGGCC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.22 MB

ultraplex_demux_CGGCC_Rev_preprocessed.bam.bai

2.33 MB

ultraplex_demux_CGGCC_Rev_preprocessed.bam

253.08 MB

ultraplex_demux_CGGCC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CGGCC_Rev_preprocessed_SJ.out.tab

320.17 kB

STAR

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.93 MB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.bam

640.63 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_SJ.out.tab

171 B

STAR

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.26 MB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.bam.bai

2.45 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled.bam

819.13 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CGGCC_Rev_preprocessed_downsampled_SJ.out.tab

16.84 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CGGCC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CGGCC_Rev_preprocessed_rc.tab.gz

228.09 kB

ultraplex_demux_CGGCC_Rev_preprocessed_tpm.tab.gz

328.43 kB

ultraplex_demux_CGGCC_Rev_preprocessed_cpm.tab.gz

278.81 kB

ultraplex_demux_CGGCC_Rev_preprocessed_expressions.txt.gz

676.40 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.81 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_CGTAA_Rev

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.bam

549.53 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.42 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.bam.bai

1.41 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_SJ.out.tab

12.44 kB

FASTQ file (single-end)

ultraplex_demux_CGTAA_Rev.fastq.gz

195.55 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CGTAA_Rev_fastqc.zip

891.59 kB

Samtools idxstats

idxstat_report.txt

5.83 kB

BBDuk (single-end)

ultraplex_demux_CGTAA_Rev_preprocessed.fastq.gz

193.02 MB

ultraplex_demux_CGTAA_Rev_statistics.txt.gz

402 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.fastq.gz

39.66 MB

fastqc

Directory

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

1.23 MB

ultraplex_demux_CGTAA_Rev_preprocessed.bam.bai

2.12 MB

ultraplex_demux_CGTAA_Rev_preprocessed.bam

162.45 MB

ultraplex_demux_CGTAA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CGTAA_Rev_preprocessed_SJ.out.tab

280.66 kB

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.17 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled.bam

441.47 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_SJ.out.tab

259 B

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CGTAA_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_CGTAA_Rev_preprocessed_rc.tab.gz

225.83 kB

ultraplex_demux_CGTAA_Rev_preprocessed_tpm.tab.gz

322.25 kB

ultraplex_demux_CGTAA_Rev_preprocessed_cpm.tab.gz

268.59 kB

ultraplex_demux_CGTAA_Rev_preprocessed_expressions.txt.gz

657.41 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.80 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed.fastq.gz

194.05 MB

ultraplex_demux_CGTAA_Rev_preprocessed_statistics.txt.gz

202 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed.fastq.gz

39.72 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

1.23 MB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed.bam.bai

2.14 MB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed.bam

162.31 MB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_SJ.out.tab

280.86 kB

STAR

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

246.73 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.93 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed.bam

34.81 MB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

198.99 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed.bw

622.74 kB

HTSeq-count (CPM)

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

180.52 kB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_rc.tab.gz

180.41 kB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_cpm.tab.gz

220.40 kB

ultraplex_demux_CGTAA_Rev_preprocessed_preprocessed_expressions.txt.gz

480.05 kB

HTSeq-count (CPM)

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.38 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

174.28 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

200.95 kB

ultraplex_demux_CGTAA_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

451.78 kB

ultraplex_demux_GAGAC_Rev

FASTQ file (single-end)

fastqc

Directory

ultraplex_demux_GAGAC_Rev.fastq.gz

370.03 MB

stderr.txt

1.15 kB

ultraplex_demux_GAGAC_Rev_fastqc.zip

873.44 kB

BBDuk (single-end)

ultraplex_demux_GAGAC_Rev_preprocessed.fastq.gz

375.53 MB

ultraplex_demux_GAGAC_Rev_statistics.txt.gz

444 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.fastq.gz

38.52 MB

fastqc

Directory

STAR

ultraplex_demux_GAGAC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.86 MB

ultraplex_demux_GAGAC_Rev_preprocessed.bam.bai

2.46 MB

ultraplex_demux_GAGAC_Rev_preprocessed.bam

321.38 MB

ultraplex_demux_GAGAC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GAGAC_Rev_preprocessed_SJ.out.tab

389.67 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.91 MB

Samtools idxstats

idxstat_report.txt

5.85 kB

STAR

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.68 MB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.bam

687.38 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_SJ.out.tab

128 B

STAR

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.26 MB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.bam.bai

2.19 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled.bam

687.74 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GAGAC_Rev_preprocessed_downsampled_SJ.out.tab

14.31 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GAGAC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GAGAC_Rev_preprocessed_rc.tab.gz

229.74 kB

ultraplex_demux_GAGAC_Rev_preprocessed_tpm.tab.gz

340.69 kB

ultraplex_demux_GAGAC_Rev_preprocessed_cpm.tab.gz

278.52 kB

ultraplex_demux_GAGAC_Rev_preprocessed_expressions.txt.gz

690.40 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_CTAGA_Rev

FASTQ file (single-end)

ultraplex_demux_CTAGA_Rev.fastq.gz

324.62 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CTAGA_Rev_fastqc.zip

875.17 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.81 MB

BBDuk (single-end)

ultraplex_demux_CTAGA_Rev_preprocessed.fastq.gz

332.40 MB

ultraplex_demux_CTAGA_Rev_statistics.txt.gz

376 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.fastq.gz

38.84 MB

fastqc

Directory

STAR

ultraplex_demux_CTAGA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.19 MB

ultraplex_demux_CTAGA_Rev_preprocessed.bam.bai

2.09 MB

ultraplex_demux_CTAGA_Rev_preprocessed.bam

276.34 MB

ultraplex_demux_CTAGA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CTAGA_Rev_preprocessed_SJ.out.tab

241.56 kB

STAR

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.16 MB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.bam

547.14 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_SJ.out.tab

84 B

STAR

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.72 MB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.bam.bai

1.33 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled.bam

407.60 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CTAGA_Rev_preprocessed_downsampled_SJ.out.tab

10.60 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CTAGA_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_CTAGA_Rev_preprocessed_rc.tab.gz

225.40 kB

ultraplex_demux_CTAGA_Rev_preprocessed_tpm.tab.gz

316.16 kB

ultraplex_demux_CTAGA_Rev_preprocessed_cpm.tab.gz

271.90 kB

ultraplex_demux_CTAGA_Rev_preprocessed_expressions.txt.gz

654.65 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_CTCTC_Rev

FASTQ file (single-end)

ultraplex_demux_CTCTC_Rev.fastq.gz

491.86 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CTCTC_Rev_fastqc.zip

870.54 kB

BBDuk (single-end)

ultraplex_demux_CTCTC_Rev_preprocessed.fastq.gz

496.95 MB

ultraplex_demux_CTCTC_Rev_statistics.txt.gz

432 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.fastq.gz

38.59 MB

fastqc

Directory

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

4.37 MB

ultraplex_demux_CTCTC_Rev_preprocessed.bam.bai

2.45 MB

ultraplex_demux_CTCTC_Rev_preprocessed.bam

409.66 MB

ultraplex_demux_CTCTC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CTCTC_Rev_preprocessed_SJ.out.tab

284.11 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.82 MB

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.77 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.bam

667.34 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_SJ.out.tab

128 B

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.33 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.bam.bai

1.96 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled.bam

677.47 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_SJ.out.tab

13.02 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CTCTC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CTCTC_Rev_preprocessed_rc.tab.gz

228.19 kB

ultraplex_demux_CTCTC_Rev_preprocessed_tpm.tab.gz

325.88 kB

ultraplex_demux_CTCTC_Rev_preprocessed_cpm.tab.gz

280.81 kB

ultraplex_demux_CTCTC_Rev_preprocessed_expressions.txt.gz

675.91 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed.fastq.gz

38.65 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_statistics.txt.gz

194 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed.fastq.gz

499.31 MB

ultraplex_demux_CTCTC_Rev_preprocessed_statistics.txt.gz

206 B

fastqc

Directory

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

320.12 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.95 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed.bam

33.88 MB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

148.11 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed.bw

587.67 kB

STAR

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

4.30 MB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed.bam.bai

2.45 MB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed.bam

409.55 MB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_SJ.out.tab

286.56 kB

HTSeq-count (CPM)

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

173.17 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

173.06 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

198.31 kB

ultraplex_demux_CTCTC_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

448.77 kB

HTSeq-count (CPM)

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

182.87 kB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_rc.tab.gz

182.75 kB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_cpm.tab.gz

231.48 kB

ultraplex_demux_CTCTC_Rev_preprocessed_preprocessed_expressions.txt.gz

495.50 kB

ultraplex_demux_GAAGT_Rev

FASTQ file (single-end)

ultraplex_demux_GAAGT_Rev.fastq.gz

441.77 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GAAGT_Rev_fastqc.zip

877.84 kB

BBDuk (single-end)

ultraplex_demux_GAAGT_Rev_preprocessed.fastq.gz

444.24 MB

ultraplex_demux_GAAGT_Rev_statistics.txt.gz

429 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.fastq.gz

37.75 MB

fastqc

Directory

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.72 MB

ultraplex_demux_GAAGT_Rev_preprocessed.bam.bai

2.50 MB

ultraplex_demux_GAAGT_Rev_preprocessed.bam

399.16 MB

ultraplex_demux_GAAGT_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GAAGT_Rev_preprocessed_SJ.out.tab

260.88 kB

Samtools idxstats

idxstat_report.txt

5.86 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.78 MB

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.93 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.bam

663.66 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_SJ.out.tab

188 B

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.30 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.bam.bai

2.48 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled.bam

813.24 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_SJ.out.tab

15.88 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GAAGT_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GAAGT_Rev_preprocessed_rc.tab.gz

228.78 kB

ultraplex_demux_GAAGT_Rev_preprocessed_tpm.tab.gz

330.05 kB

ultraplex_demux_GAAGT_Rev_preprocessed_cpm.tab.gz

281.46 kB

ultraplex_demux_GAAGT_Rev_preprocessed_expressions.txt.gz

681.75 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed.fastq.gz

37.82 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed.fastq.gz

446.28 MB

ultraplex_demux_GAAGT_Rev_preprocessed_statistics.txt.gz

202 B

fastqc

Directory

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

296.35 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed.bam.bai

2.04 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed.bam

35.73 MB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

135.38 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed.bw

619.45 kB

STAR

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

3.66 MB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed.bam.bai

2.51 MB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed.bam

399.02 MB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_SJ.out.tab

261.01 kB

HTSeq-count (CPM)

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

173.56 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

173.45 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

199.09 kB

ultraplex_demux_GAAGT_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

449.54 kB

HTSeq-count (CPM)

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

183.31 kB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_rc.tab.gz

183.19 kB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_cpm.tab.gz

231.44 kB

ultraplex_demux_GAAGT_Rev_preprocessed_preprocessed_expressions.txt.gz

495.54 kB

ultraplex_demux_CTGAG_Rev

FASTQ file (single-end)

ultraplex_demux_CTGAG_Rev.fastq.gz

437.55 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_CTGAG_Rev_fastqc.zip

879.70 kB

BBDuk (single-end)

ultraplex_demux_CTGAG_Rev_preprocessed.fastq.gz

442.39 MB

ultraplex_demux_CTGAG_Rev_statistics.txt.gz

402 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.fastq.gz

37.01 MB

fastqc

Directory

STAR

ultraplex_demux_CTGAG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.73 MB

ultraplex_demux_CTGAG_Rev_preprocessed.bam.bai

2.39 MB

ultraplex_demux_CTGAG_Rev_preprocessed.bam

406.53 MB

ultraplex_demux_CTGAG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_CTGAG_Rev_preprocessed_SJ.out.tab

308.17 kB

STAR

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.41 MB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.bam

526.87 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_SJ.out.tab

94 B

STAR

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.92 MB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.bam.bai

1.41 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled.bam

467.92 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_CTGAG_Rev_preprocessed_downsampled_SJ.out.tab

12.38 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_CTGAG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_CTGAG_Rev_preprocessed_rc.tab.gz

228.12 kB

ultraplex_demux_CTGAG_Rev_preprocessed_tpm.tab.gz

327.80 kB

ultraplex_demux_CTGAG_Rev_preprocessed_cpm.tab.gz

279.97 kB

ultraplex_demux_CTGAG_Rev_preprocessed_expressions.txt.gz

676.97 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.89 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_GACTG_Rev

FASTQ file (single-end)

ultraplex_demux_GACTG_Rev.fastq.gz

348.49 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GACTG_Rev_fastqc.zip

867.68 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GACTG_Rev_preprocessed.fastq.gz

343.13 MB

ultraplex_demux_GACTG_Rev_statistics.txt.gz

415 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.fastq.gz

39.93 MB

fastqc

Directory

STAR

ultraplex_demux_GACTG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.31 MB

ultraplex_demux_GACTG_Rev_preprocessed.bam.bai

2.44 MB

ultraplex_demux_GACTG_Rev_preprocessed.bam

278.76 MB

ultraplex_demux_GACTG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GACTG_Rev_preprocessed_SJ.out.tab

351.51 kB

STAR

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.13 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.bam

647.21 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_SJ.out.tab

43 B

STAR

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.57 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.bam.bai

2.33 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled.bam

737.01 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_SJ.out.tab

16.17 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GACTG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GACTG_Rev_preprocessed_rc.tab.gz

229.20 kB

ultraplex_demux_GACTG_Rev_preprocessed_tpm.tab.gz

334.82 kB

ultraplex_demux_GACTG_Rev_preprocessed_cpm.tab.gz

279.00 kB

ultraplex_demux_GACTG_Rev_preprocessed_expressions.txt.gz

685.58 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.82 MB

BBDuk (single-end)

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed.fastq.gz

39.99 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_statistics.txt.gz

198 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed.fastq.gz

344.93 MB

ultraplex_demux_GACTG_Rev_preprocessed_statistics.txt.gz

203 B

fastqc

Directory

STAR

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

261.87 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed.bam.bai

2.07 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed.bam

35.10 MB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

214.84 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed.bw

741.47 kB

STAR

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.29 MB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed.bam.bai

2.44 MB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed.bam

278.65 MB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_SJ.out.tab

352.26 kB

HTSeq-count (CPM)

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.61 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

174.50 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

200.85 kB

ultraplex_demux_GACTG_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

452.08 kB

HTSeq-count (CPM)

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

183.68 kB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_rc.tab.gz

183.56 kB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_cpm.tab.gz

230.64 kB

ultraplex_demux_GACTG_Rev_preprocessed_preprocessed_expressions.txt.gz

494.08 kB

ultraplex_demux_GATCA_Rev

FASTQ file (single-end)

ultraplex_demux_GATCA_Rev.fastq.gz

554.28 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GATCA_Rev_fastqc.zip

864.54 kB

Samtools idxstats

idxstat_report.txt

5.87 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

9.02 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GATCA_Rev_preprocessed.fastq.gz

547.87 MB

ultraplex_demux_GATCA_Rev_statistics.txt.gz

436 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.fastq.gz

38.27 MB

fastqc

Directory

STAR

ultraplex_demux_GATCA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.80 MB

ultraplex_demux_GATCA_Rev_preprocessed.bam.bai

2.64 MB

ultraplex_demux_GATCA_Rev_preprocessed.bam

467.54 MB

ultraplex_demux_GATCA_Rev_preprocessed_stats.txt

1.82 kB

ultraplex_demux_GATCA_Rev_preprocessed_SJ.out.tab

414.17 kB

STAR

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.06 MB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.bam.bai

1.64 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.bam

641.11 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_SJ.out.tab

15.28 kB

STAR

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.13 MB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GATCA_Rev_preprocessed_downsampled.bam

923.14 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GATCA_Rev_preprocessed_downsampled_SJ.out.tab

171 B

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GATCA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GATCA_Rev_preprocessed_rc.tab.gz

231.47 kB

ultraplex_demux_GATCA_Rev_preprocessed_tpm.tab.gz

339.49 kB

ultraplex_demux_GATCA_Rev_preprocessed_cpm.tab.gz

290.95 kB

ultraplex_demux_GATCA_Rev_preprocessed_expressions.txt.gz

702.94 kB

ultraplex_demux_GCGCG_Rev

FASTQ file (single-end)

ultraplex_demux_GCGCG_Rev.fastq.gz

326.71 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GCGCG_Rev_fastqc.zip

865.33 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GCGCG_Rev_preprocessed.fastq.gz

331.06 MB

ultraplex_demux_GCGCG_Rev_statistics.txt.gz

419 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.fastq.gz

40.12 MB

fastqc

Directory

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.07 MB

ultraplex_demux_GCGCG_Rev_preprocessed.bam.bai

2.27 MB

ultraplex_demux_GCGCG_Rev_preprocessed.bam

260.93 MB

ultraplex_demux_GCGCG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCGCG_Rev_preprocessed_SJ.out.tab

252.75 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.12 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.bam

761.31 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_SJ.out.tab

43 B

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.61 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.bam.bai

3.05 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled.bam

908.20 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_SJ.out.tab

17.05 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GCGCG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GCGCG_Rev_preprocessed_rc.tab.gz

227.48 kB

ultraplex_demux_GCGCG_Rev_preprocessed_tpm.tab.gz

323.15 kB

ultraplex_demux_GCGCG_Rev_preprocessed_cpm.tab.gz

279.41 kB

ultraplex_demux_GCGCG_Rev_preprocessed_expressions.txt.gz

671.30 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.86 MB

BBDuk (single-end)

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed.fastq.gz

332.86 MB

ultraplex_demux_GCGCG_Rev_preprocessed_statistics.txt.gz

203 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed.fastq.gz

40.18 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_statistics.txt.gz

194 B

fastqc

Directory

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

238.26 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.98 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed.bam

33.76 MB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

162.69 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed.bw

644.96 kB

STAR

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.06 MB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed.bam.bai

2.29 MB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed.bam

260.83 MB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_SJ.out.tab

252.10 kB

HTSeq-count (CPM)

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.27 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

174.16 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

200.84 kB

ultraplex_demux_GCGCG_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

452.07 kB

HTSeq-count (CPM)

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

182.11 kB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_rc.tab.gz

181.99 kB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_cpm.tab.gz

229.32 kB

ultraplex_demux_GCGCG_Rev_preprocessed_preprocessed_expressions.txt.gz

492.05 kB

ultraplex_demux_GCCGC_Rev

FASTQ file (single-end)

ultraplex_demux_GCCGC_Rev.fastq.gz

303.40 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GCCGC_Rev_fastqc.zip

869.17 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GCCGC_Rev_preprocessed.fastq.gz

311.60 MB

ultraplex_demux_GCCGC_Rev_statistics.txt.gz

438 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.fastq.gz

38.28 MB

fastqc

Directory

STAR

ultraplex_demux_GCCGC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

1.96 MB

ultraplex_demux_GCCGC_Rev_preprocessed.bam.bai

2.18 MB

ultraplex_demux_GCCGC_Rev_preprocessed.bam

260.41 MB

ultraplex_demux_GCCGC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCCGC_Rev_preprocessed_SJ.out.tab

261.08 kB

Samtools idxstats

idxstat_report.txt

5.83 kB

STAR

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.05 MB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.bam

913.57 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_SJ.out.tab

84 B

STAR

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.02 MB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.bam.bai

1.71 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled.bam

566.33 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GCCGC_Rev_preprocessed_downsampled_SJ.out.tab

13.05 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GCCGC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GCCGC_Rev_preprocessed_rc.tab.gz

226.45 kB

ultraplex_demux_GCCGC_Rev_preprocessed_tpm.tab.gz

322.50 kB

ultraplex_demux_GCCGC_Rev_preprocessed_cpm.tab.gz

273.91 kB

ultraplex_demux_GCCGC_Rev_preprocessed_expressions.txt.gz

663.66 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.99 MB

ultraplex_demux_GGAAG_Rev

FASTQ file (single-end)

ultraplex_demux_GGAAG_Rev.fastq.gz

441.94 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GGAAG_Rev_fastqc.zip

871.15 kB

BBDuk (single-end)

ultraplex_demux_GGAAG_Rev_preprocessed.fastq.gz

450.66 MB

ultraplex_demux_GGAAG_Rev_statistics.txt.gz

399 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.fastq.gz

36.29 MB

fastqc

Directory

STAR

ultraplex_demux_GGAAG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

4.14 MB

ultraplex_demux_GGAAG_Rev_preprocessed.bam.bai

2.41 MB

ultraplex_demux_GGAAG_Rev_preprocessed.bam

410.85 MB

ultraplex_demux_GGAAG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GGAAG_Rev_preprocessed_SJ.out.tab

272.42 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.97 MB

STAR

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.96 MB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.bam.bai

2.12 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.bam

700.25 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_SJ.out.tab

16.69 kB

STAR

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.60 MB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled.bam

570.10 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GGAAG_Rev_preprocessed_downsampled_SJ.out.tab

139 B

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GGAAG_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GGAAG_Rev_preprocessed_rc.tab.gz

228.58 kB

ultraplex_demux_GGAAG_Rev_preprocessed_tpm.tab.gz

327.09 kB

ultraplex_demux_GGAAG_Rev_preprocessed_cpm.tab.gz

283.33 kB

ultraplex_demux_GGAAG_Rev_preprocessed_expressions.txt.gz

679.87 kB

Samtools idxstats

idxstat_report.txt

5.86 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_GCTAT_Rev

FASTQ file (single-end)

ultraplex_demux_GCTAT_Rev.fastq.gz

443.28 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GCTAT_Rev_fastqc.zip

866.33 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GCTAT_Rev_preprocessed.fastq.gz

445.21 MB

ultraplex_demux_GCTAT_Rev_statistics.txt.gz

451 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.fastq.gz

40.25 MB

fastqc

Directory

STAR

ultraplex_demux_GCTAT_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.85 MB

ultraplex_demux_GCTAT_Rev_preprocessed.bam.bai

2.57 MB

ultraplex_demux_GCTAT_Rev_preprocessed.bam

370.09 MB

ultraplex_demux_GCTAT_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCTAT_Rev_preprocessed_SJ.out.tab

397.41 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

STAR

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.39 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.bam

689.10 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_SJ.out.tab

225 B

STAR

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.77 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.bam.bai

2.81 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled.bam

928.31 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_SJ.out.tab

18.53 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GCTAT_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GCTAT_Rev_preprocessed_rc.tab.gz

231.32 kB

ultraplex_demux_GCTAT_Rev_preprocessed_tpm.tab.gz

339.81 kB

ultraplex_demux_GCTAT_Rev_preprocessed_cpm.tab.gz

290.49 kB

ultraplex_demux_GCTAT_Rev_preprocessed_expressions.txt.gz

702.42 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.98 MB

BBDuk (single-end)

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed.fastq.gz

40.31 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_statistics.txt.gz

192 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed.fastq.gz

447.33 MB

ultraplex_demux_GCTAT_Rev_preprocessed_statistics.txt.gz

205 B

fastqc

Directory

STAR

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

243.84 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed.bam.bai

2.09 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed.bam

36.82 MB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

220.59 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed.bw

837.47 kB

STAR

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.84 MB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed.bam.bai

2.57 MB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed.bam

369.84 MB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_SJ.out.tab

395.56 kB

HTSeq-count (CPM)

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

175.26 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

175.15 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

202.91 kB

ultraplex_demux_GCTAT_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

454.73 kB

HTSeq-count (CPM)

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

185.48 kB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_rc.tab.gz

185.36 kB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_cpm.tab.gz

238.30 kB

ultraplex_demux_GCTAT_Rev_preprocessed_preprocessed_expressions.txt.gz

505.85 kB

ultraplex_demux_GTACC_Rev

FASTQ file (single-end)

ultraplex_demux_GTACC_Rev.fastq.gz

337.96 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GTACC_Rev_fastqc.zip

866.03 kB

Samtools idxstats

idxstat_report.txt

5.86 kB

BBDuk (single-end)

ultraplex_demux_GTACC_Rev_preprocessed.fastq.gz

331.07 MB

ultraplex_demux_GTACC_Rev_statistics.txt.gz

409 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.fastq.gz

40.49 MB

fastqc

Directory

STAR

ultraplex_demux_GTACC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

1.94 MB

ultraplex_demux_GTACC_Rev_preprocessed.bam.bai

2.41 MB

ultraplex_demux_GTACC_Rev_preprocessed.bam

266.51 MB

ultraplex_demux_GTACC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GTACC_Rev_preprocessed_SJ.out.tab

356.37 kB

STAR

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

40.17 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.bam.bai

2.07 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.bam

692.37 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_SJ.out.tab

16.44 kB

STAR

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.86 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_GTACC_Rev_preprocessed_downsampled.bam

1.23 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_SJ.out.tab

260 B

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GTACC_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GTACC_Rev_preprocessed_rc.tab.gz

227.79 kB

ultraplex_demux_GTACC_Rev_preprocessed_tpm.tab.gz

326.60 kB

ultraplex_demux_GTACC_Rev_preprocessed_cpm.tab.gz

277.86 kB

ultraplex_demux_GTACC_Rev_preprocessed_expressions.txt.gz

673.32 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.88 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed.fastq.gz

40.55 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed.fastq.gz

332.59 MB

ultraplex_demux_GTACC_Rev_preprocessed_statistics.txt.gz

202 B

fastqc

Directory

STAR

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

232.95 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed.bam.bai

2.05 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed.bam

35.19 MB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

218.68 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed.bw

748.40 kB

STAR

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

1.94 MB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed.bam.bai

2.40 MB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed.bam

266.24 MB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_SJ.out.tab

357.93 kB

HTSeq-count (CPM)

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

174.29 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

174.18 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

200.69 kB

ultraplex_demux_GTACC_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

451.73 kB

HTSeq-count (CPM)

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

182.45 kB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_rc.tab.gz

182.33 kB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_cpm.tab.gz

228.82 kB

ultraplex_demux_GTACC_Rev_preprocessed_preprocessed_expressions.txt.gz

491.49 kB

ultraplex_demux_GTCAA_Rev

FASTQ file (single-end)

ultraplex_demux_GTCAA_Rev.fastq.gz

358.71 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GTCAA_Rev_fastqc.zip

867.40 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_GTCAA_Rev_preprocessed.fastq.gz

364.56 MB

ultraplex_demux_GTCAA_Rev_statistics.txt.gz

426 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.fastq.gz

38.15 MB

fastqc

Directory

STAR

ultraplex_demux_GTCAA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.51 MB

ultraplex_demux_GTCAA_Rev_preprocessed.bam.bai

2.31 MB

ultraplex_demux_GTCAA_Rev_preprocessed.bam

312.87 MB

ultraplex_demux_GTCAA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GTCAA_Rev_preprocessed_SJ.out.tab

366.93 kB

STAR

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.88 MB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.bam

1005.72 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_SJ.out.tab

279 B

STAR

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.95 MB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.bam.bai

1.70 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled.bam

558.66 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GTCAA_Rev_preprocessed_downsampled_SJ.out.tab

12.90 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GTCAA_Rev_preprocessed_featureCounts_rc.txt.gz

4.72 MB

ultraplex_demux_GTCAA_Rev_preprocessed_rc.tab.gz

227.66 kB

ultraplex_demux_GTCAA_Rev_preprocessed_tpm.tab.gz

329.47 kB

ultraplex_demux_GTCAA_Rev_preprocessed_cpm.tab.gz

275.90 kB

ultraplex_demux_GTCAA_Rev_preprocessed_expressions.txt.gz

673.37 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.96 MB

ultraplex_demux_TAATC_Rev

FASTQ file (single-end)

ultraplex_demux_TAATC_Rev.fastq.gz

109.49 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_TAATC_Rev_fastqc.zip

889.47 kB

Samtools idxstats

idxstat_report.txt

5.82 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_TAATC_Rev_preprocessed.fastq.gz

106.72 MB

ultraplex_demux_TAATC_Rev_statistics.txt.gz

352 B

fastqc

Directory

STAR

ultraplex_demux_TAATC_Rev_preprocessed_unmapped.out.mate1.fastq.gz

1.21 MB

ultraplex_demux_TAATC_Rev_preprocessed.bam.bai

2.11 MB

ultraplex_demux_TAATC_Rev_preprocessed.bam

91.81 MB

ultraplex_demux_TAATC_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TAATC_Rev_preprocessed_SJ.out.tab

191.15 kB

Subsample FASTQ (single-end)

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.fastq.gz

37.93 MB

fastqc

Directory

featureCounts

featureCounts_rc.txt.summary

357 B

ultraplex_demux_TAATC_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_TAATC_Rev_preprocessed_rc.tab.gz

220.98 kB

ultraplex_demux_TAATC_Rev_preprocessed_tpm.tab.gz

304.43 kB

ultraplex_demux_TAATC_Rev_preprocessed_cpm.tab.gz

253.94 kB

ultraplex_demux_TAATC_Rev_preprocessed_expressions.txt.gz

619.25 kB

STAR

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.28 MB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.bam

1.24 MB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_SJ.out.tab

310 B

STAR

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.29 MB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.bam.bai

3.20 kB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled.bam

1.15 MB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_TAATC_Rev_preprocessed_downsampled_SJ.out.tab

14.84 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.74 MB

ultraplex_demux_GTTGG_Rev

FASTQ file (single-end)

ultraplex_demux_GTTGG_Rev.fastq.gz

283.69 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_GTTGG_Rev_fastqc.zip

874.93 kB

BBDuk (single-end)

ultraplex_demux_GTTGG_Rev_preprocessed.fastq.gz

283.59 MB

ultraplex_demux_GTTGG_Rev_statistics.txt.gz

420 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.fastq.gz

35.04 MB

fastqc

Directory

STAR

ultraplex_demux_GTTGG_Rev_preprocessed_unmapped.out.mate1.fastq.gz

4.59 MB

ultraplex_demux_GTTGG_Rev_preprocessed.bam.bai

2.17 MB

ultraplex_demux_GTTGG_Rev_preprocessed.bam

268.88 MB

ultraplex_demux_GTTGG_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_GTTGG_Rev_preprocessed_SJ.out.tab

262.50 kB

STAR

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

34.20 MB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.bam

660.85 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_SJ.out.tab

311 B

STAR

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

34.87 MB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.bam.bai

1.44 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled.bam

495.30 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_GTTGG_Rev_preprocessed_downsampled_SJ.out.tab

12.17 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_GTTGG_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_GTTGG_Rev_preprocessed_rc.tab.gz

224.48 kB

ultraplex_demux_GTTGG_Rev_preprocessed_tpm.tab.gz

314.17 kB

ultraplex_demux_GTTGG_Rev_preprocessed_cpm.tab.gz

268.36 kB

ultraplex_demux_GTTGG_Rev_preprocessed_expressions.txt.gz

648.12 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.95 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

ultraplex_demux_TACGA_Rev

FASTQ file (single-end)

ultraplex_demux_TACGA_Rev.fastq.gz

318.23 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_TACGA_Rev_fastqc.zip

869.60 kB

Samtools idxstats

idxstat_report.txt

5.84 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.88 MB

BBDuk (single-end)

ultraplex_demux_TACGA_Rev_preprocessed.fastq.gz

324.49 MB

ultraplex_demux_TACGA_Rev_statistics.txt.gz

416 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.fastq.gz

39.01 MB

fastqc

Directory

STAR

ultraplex_demux_TACGA_Rev_preprocessed_unmapped.out.mate1.fastq.gz

2.10 MB

ultraplex_demux_TACGA_Rev_preprocessed.bam.bai

2.20 MB

ultraplex_demux_TACGA_Rev_preprocessed.bam

274.14 MB

ultraplex_demux_TACGA_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TACGA_Rev_preprocessed_SJ.out.tab

256.69 kB

STAR

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.67 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.bam.bai

2.26 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.bam

647.25 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_SJ.out.tab

13.46 kB

STAR

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.50 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.bam.bai

264 B

ultraplex_demux_TACGA_Rev_preprocessed_downsampled.bam

1.10 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_SJ.out.tab

182 B

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_TACGA_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_TACGA_Rev_preprocessed_rc.tab.gz

225.99 kB

ultraplex_demux_TACGA_Rev_preprocessed_tpm.tab.gz

320.13 kB

ultraplex_demux_TACGA_Rev_preprocessed_cpm.tab.gz

271.99 kB

ultraplex_demux_TACGA_Rev_preprocessed_expressions.txt.gz

659.21 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed.fastq.gz

39.08 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_statistics.txt.gz

193 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed.fastq.gz

326.19 MB

ultraplex_demux_TACGA_Rev_preprocessed_statistics.txt.gz

202 B

fastqc

Directory

STAR

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

236.48 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.89 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed.bam

34.15 MB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

168.83 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed.bw

544.46 kB

STAR

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

2.07 MB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed.bam.bai

2.20 MB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed.bam

274.05 MB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_SJ.out.tab

256.87 kB

HTSeq-count (CPM)

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

172.89 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

172.79 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

197.95 kB

ultraplex_demux_TACGA_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

448.37 kB

HTSeq-count (CPM)

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

180.85 kB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_rc.tab.gz

180.74 kB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_cpm.tab.gz

223.83 kB

ultraplex_demux_TACGA_Rev_preprocessed_preprocessed_expressions.txt.gz

484.41 kB

ultraplex_demux_TAGCT_Rev

FASTQ file (single-end)

ultraplex_demux_TAGCT_Rev.fastq.gz

351.24 MB

fastqc

Directory

stderr.txt

1.15 kB

ultraplex_demux_TAGCT_Rev_fastqc.zip

867.24 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

8.91 MB

BBDuk (single-end)

ultraplex_demux_TAGCT_Rev_preprocessed.fastq.gz

356.82 MB

ultraplex_demux_TAGCT_Rev_statistics.txt.gz

405 B

fastqc

Directory

Subsample FASTQ (single-end)

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.fastq.gz

37.29 MB

fastqc

Directory

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_unmapped.out.mate1.fastq.gz

3.24 MB

ultraplex_demux_TAGCT_Rev_preprocessed.bam.bai

2.29 MB

ultraplex_demux_TAGCT_Rev_preprocessed.bam

311.15 MB

ultraplex_demux_TAGCT_Rev_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TAGCT_Rev_preprocessed_SJ.out.tab

230.92 kB

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.03 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.bam.bai

336 B

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.bam

946.87 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_stats.txt

1.78 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_SJ.out.tab

257 B

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

36.82 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.bam.bai

3.13 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled.bam

868.39 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_stats.txt

1.79 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_SJ.out.tab

14.16 kB

featureCounts

featureCounts_rc.txt.summary

359 B

ultraplex_demux_TAGCT_Rev_preprocessed_featureCounts_rc.txt.gz

4.71 MB

ultraplex_demux_TAGCT_Rev_preprocessed_rc.tab.gz

226.02 kB

ultraplex_demux_TAGCT_Rev_preprocessed_tpm.tab.gz

318.64 kB

ultraplex_demux_TAGCT_Rev_preprocessed_cpm.tab.gz

273.99 kB

ultraplex_demux_TAGCT_Rev_preprocessed_expressions.txt.gz

660.16 kB

Samtools idxstats

idxstat_report.txt

5.85 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed.fastq.gz

37.35 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_statistics.txt.gz

196 B

fastqc

Directory

BBDuk (single-end)

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed.fastq.gz

358.65 MB

ultraplex_demux_TAGCT_Rev_preprocessed_statistics.txt.gz

203 B

fastqc

Directory

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

315.91 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed.bam.bai

1.94 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed.bam

33.77 MB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_SJ.out.tab

140.83 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed.bw

547.48 kB

STAR

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

3.21 MB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed.bam.bai

2.29 MB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed.bam

311.20 MB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_stats.txt

1.81 kB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_SJ.out.tab

231.25 kB

HTSeq-count (CPM)

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_HTseq_rc.txt.gz

172.73 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_rc.tab.gz

172.63 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_cpm.tab.gz

196.89 kB

ultraplex_demux_TAGCT_Rev_preprocessed_downsampled_preprocessed_expressions.txt.gz

446.80 kB

HTSeq-count (CPM)

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_HTseq_rc.txt.gz

180.99 kB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_rc.tab.gz

180.88 kB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_cpm.tab.gz

224.88 kB

ultraplex_demux_TAGCT_Rev_preprocessed_preprocessed_expressions.txt.gz

485.73 kB