Sox2 ChIP-Seq Buecker et al 2014

mES_Sox2_3p_2i_r1

FASTQ file (single-end)

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq.fastq.gz

1.55 GB

fastqc

Directory

stderr.txt

1.85 kB

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq_fastqc.zip

323.24 kB

BWA ALN

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq.bam

1.71 GB

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq.bam.bai

1.97 MB

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

84.90 MB

mES_H3K27me3_3p_2i

FASTQ file (single-end)

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq.fastq.gz

1.05 GB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq_fastqc.zip

394.65 kB

BWA ALN

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq.bam

1.16 GB

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq.bam.bai

2.29 MB

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

329.58 MB

mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq

MACS 2.0

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_filtered.bam

752.95 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt

252 B

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.tagAlign.gz

148.14 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_filtered.bam.bai

2.29 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_treat_pileup.bdg

1.33 GB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_control_lambda.bdg

596.65 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_peaks.xls

4.15 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_peaks_narrowPeak.bb

1.84 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_summits.bb

522.40 kB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_summits.bed.gz

466.37 kB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_summits.bed.gz.tbi

236.89 kB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_treat_pileup.bw

219.34 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_control_lambda.bw

95.62 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_postpeak_qc_report.txt

169 B

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_peaks.narrowPeak.gz

622.04 kB

ChipQC

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_ChIPQCreport

Directory

CCPlot_mqc.png

66.50 kB

CoverageHistogramPlot_mqc.png

71.89 kB

Rip_mqc.png

48.99 kB

Rap_mqc.png

28.96 kB

PeakProfile_mqc.png

76.70 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.44 MB

FASTQ file (single-end)

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.fastq.gz

1.12 GB

fastqc

Directory

stderr.txt

1.85 kB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_fastqc.zip

326.65 kB

BWA ALN

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.bam

1.30 GB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.bam.bai

2.02 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

76.85 MB

mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq

FASTQ file (single-end)

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq.fastq.gz

664.86 MB

fastqc

Directory

stderr.txt

1.85 kB

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq_fastqc.zip

312.33 kB

BWA ALN

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq.bam

741.48 MB

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq.bam.bai

3.06 MB

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

16.18 MB

mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq

FASTQ file (single-end)

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq.fastq.gz

1.04 GB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq_fastqc.zip

437.47 kB

BWA ALN

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq.bam

1.11 GB

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq.bam.bai

2.52 MB

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

226.83 MB

mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq

FASTQ file (single-end)

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq.fastq.gz

685.95 MB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq_fastqc.zip

334.25 kB

BWA ALN

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq.bam

764.50 MB

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq.bam.bai

2.84 MB

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

39.94 MB

No Sample

BWA ALN

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq.bam

764.50 MB

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq.bam.bai

2.84 MB

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

39.94 MB

MACS 2.0

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_filtered.bam

752.95 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_prepeak_qc_report.txt

252 B

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.tagAlign.gz

148.14 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_filtered.bam.bai

2.29 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_treat_pileup.bdg

1.33 GB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_control_lambda.bdg

596.65 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_peaks.xls

4.15 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_peaks_narrowPeak.bb

1.84 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_summits.bb

522.40 kB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_summits.bed.gz

466.37 kB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_summits.bed.gz.tbi

236.89 kB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_treat_pileup.bw

219.34 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_control_lambda.bw

95.62 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_postpeak_qc_report.txt

169 B

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_peaks.narrowPeak.gz

622.04 kB

ChipQC

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_ChIPQCreport

Directory

CCPlot_mqc.png

66.50 kB

CoverageHistogramPlot_mqc.png

71.89 kB

Rip_mqc.png

48.99 kB

Rap_mqc.png

28.96 kB

PeakProfile_mqc.png

76.70 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.44 MB

FASTQ file (single-end)

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.fastq.gz

1.12 GB

fastqc

Directory

stderr.txt

1.85 kB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_fastqc.zip

326.65 kB

FASTQ file (single-end)

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq.fastq.gz

1.05 GB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq_fastqc.zip

394.65 kB

FASTQ file (single-end)

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq.fastq.gz

1.55 GB

fastqc

Directory

stderr.txt

1.85 kB

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq_fastqc.zip

323.24 kB

FASTQ file (single-end)

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq.fastq.gz

685.95 MB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144646_GSM1842765_mES_Sox2_24h_2i_r1_Mus_musculus_ChIP-Seq_fastqc.zip

334.25 kB

FASTQ file (single-end)

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.fastq.gz

117.27 MB

fastqc

Directory

stderr.txt

1.83 kB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_fastqc.zip

325.02 kB

FASTQ file (single-end)

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq.fastq.gz

1.04 GB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq_fastqc.zip

437.47 kB

FASTQ file (single-end)

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq.fastq.gz

664.86 MB

fastqc

Directory

stderr.txt

1.85 kB

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq_fastqc.zip

312.33 kB

FASTQ file (single-end)

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1.fastq.gz

577.09 MB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1_fastqc.zip

328.90 kB

FASTQ file (single-end)

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2.fastq.gz

692.43 MB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2_fastqc.zip

354.58 kB

BWA ALN

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq.bam

1.16 GB

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq.bam.bai

2.29 MB

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144625_GSM1842744_mES_H3K27me3_3p_2i_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

329.58 MB

BWA ALN

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.bam

1.30 GB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.bam.bai

2.02 MB

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144644_GSM1842763_mES_Sox2_Serum_r1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

76.85 MB

BWA ALN

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq.bam

1.71 GB

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq.bam.bai

1.97 MB

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144645_GSM1842764_mES_Sox2_3p_2i_r1_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

84.90 MB

BWA ALN

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq.bam

741.48 MB

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq.bam.bai

3.06 MB

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144647_GSM1842766_mES_Sox2_Serum_r2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

16.18 MB

BWA ALN

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.bam

130.60 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.bam.bai

2.51 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.stats.txt

386 B

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_unmapped.fastq.gz

48.49 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.bw

1.46 MB

BWA ALN

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq.bam

1.11 GB

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq.bam.bai

2.52 MB

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq.stats.txt

388 B

SRR2144648_GSM1842767_mES_Sox2_24h_2i_r2_Mus_musculus_ChIP-Seq_unmapped.fastq.gz

226.83 MB

BWA ALN

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2.bam

743.22 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2.bam.bai

2.97 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2.stats.txt

388 B

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2_unmapped.fastq.gz

202.84 MB

BWA ALN

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1.bam

613.12 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1.bam.bai

3.09 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1.stats.txt

388 B

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1_unmapped.fastq.gz

152.33 MB

mES_WT_Serum_rep1_Mus_musculus_RNA-Seq

FASTQ file (single-end)

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.fastq.gz

117.27 MB

fastqc

Directory

stderr.txt

1.83 kB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_fastqc.zip

325.02 kB

BWA ALN

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.bam

130.60 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.bam.bai

2.51 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.stats.txt

386 B

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_unmapped.fastq.gz

48.49 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq.bw

1.46 MB

mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1

FASTQ file (single-end)

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1.fastq.gz

577.09 MB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1_fastqc.zip

328.90 kB

BWA ALN

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1.bam

613.12 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1.bam.bai

3.09 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1.stats.txt

388 B

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_1_unmapped.fastq.gz

152.33 MB

mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2

FASTQ file (single-end)

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2.fastq.gz

692.43 MB

fastqc

Directory

stderr.txt

1.87 kB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2_fastqc.zip

354.58 kB

BWA ALN

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2.bam

743.22 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2.bam.bai

2.97 MB

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2.stats.txt

388 B

SRR2144649_GSM1842768_mES_WT_Serum_rep1_Mus_musculus_RNA-Seq_2_unmapped.fastq.gz

202.84 MB