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Folder iconSDMA_and_SmB_CLIP_ADMAi_LU99

Llywelyn Griffith
Aug. 2, 2021

SDMA_CLIP_DMSO_2

Cutadapt (single-end)
fastqc
Directory
report.txt
652 B
sdma-clip-dmso-2_trimmed.fastq.gz
148.32 MB
iCount RNA-maps
sdma-clip-dmso-2_mapped_to_genome_single.tar.gz
1.75 MB
iCount summary
sdma-clip-dmso-2_mapped_to_genome_single_summary_type.tsv
621 B
sdma-clip-dmso-2_mapped_to_genome_single_summary_subtype.tsv
1018 B
sdma-clip-dmso-2_mapped_to_genome_single_summary_gene.tsv
2.45 MB
Paraclu
sdma-clip-dmso-2_mapped_to_genome_single_peaks.bed.gz
43.26 kB
PEKA
4mer analysis of sdma-clip-dmso-2_mapped_to_genome.tar.gz
507.94 kB
iCount xlsites
sdma-clip-dmso-2_mapped_to_genome_skipped.bam
3.65 kB
sdma-clip-dmso-2_mapped_to_genome_single.bed.gz
5.33 MB
sdma-clip-dmso-2_mapped_to_genome_singleAndMulti.bed.gz
9.24 MB
sdma-clip-dmso-2_mapped_to_genome_reads_single.bed.gz
5.53 MB
sdma-clip-dmso-2_mapped_to_genome_single.bedgraph
24.28 MB
STAR
sdma-clip-dmso-2_trimmed_unmapped.out.mate1.fastq.gz
38.12 MB
sdma-clip-dmso-2_trimmed.bam.bai
4.20 MB
sdma-clip-dmso-2_trimmed.bam
626.10 MB
sdma-clip-dmso-2_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-2_trimmed_SJ.out.tab
1.03 MB
FASTQ file (CLIP)
sdma-clip-dmso-2.fastq.gz
145.65 MB
fastqc
Directory
sdma-clip-dmso-2_fastqc.zip
501.86 kB

No Sample

Paraclu
SDMA_CLIP_DMSO_grouped_grouped_cdna_peaks.bed.gz
252.48 kB
iCount RNA-maps
SDMA_CLIP_DMSO_grouped_grouped_cdna.tar.gz
3.21 MB
FASTQ file (CLIP)
sdma-clip-dmso-1-mock-input.fastq.gz
339.67 MB
fastqc
Directory
sdma-clip-dmso-1-mock-input_fastqc.zip
458.60 kB
iCount xlsites
sdma-clip-dmso-1_mapped_to_genome_skipped.bam
3.53 kB
sdma-clip-dmso-1_mapped_to_genome_single.bed.gz
5.68 MB
sdma-clip-dmso-1_mapped_to_genome_singleAndMulti.bed.gz
9.00 MB
sdma-clip-dmso-1_mapped_to_genome_reads_single.bed.gz
5.89 MB
sdma-clip-dmso-1_mapped_to_genome_single.bedgraph
26.41 MB
iCount RNA-maps
sdma-clip-dmso-3_mapped_to_genome_single.tar.gz
2.14 MB
PEKA
4mer analysis of sdma-clip-dmso-1_mapped_to_genome.tar.gz
505.67 kB
iCount group
SDMA_CLIP_DMSO_grouped_grouped_cdna.bed.gz
17.52 MB
SDMA_CLIP_DMSO_grouped_grouped_reads.bed.gz
18.14 MB
SDMA_CLIP_DMSO_grouped_grouped_cdna.bedgraph
82.80 MB
iCount group
SDMA_CLIP_ADMAi_grouped_grouped_cdna.bed.gz
15.59 MB
SDMA_CLIP_ADMAi_grouped_grouped_reads.bed.gz
16.22 MB
SDMA_CLIP_ADMAi_grouped_grouped_cdna.bedgraph
73.29 MB
iCount summary
SDMA_CLIP_DMSO_grouped_grouped_cdna_summary_type.tsv
444 B
SDMA_CLIP_DMSO_grouped_grouped_cdna_summary_subtype.tsv
1.00 kB
SDMA_CLIP_DMSO_grouped_grouped_cdna_summary_gene.tsv
2.93 MB
iCount group
SmB_CLIP_DMSO_grouped_grouped_cdna.bed.gz
38.15 MB
SmB_CLIP_DMSO_grouped_grouped_reads.bed.gz
39.29 MB
SmB_CLIP_DMSO_grouped_grouped_cdna.bedgraph
182.97 MB
iCount summary
SDMA_CLIP_ADMAi_grouped_grouped_cdna_summary_type.tsv
445 B
SDMA_CLIP_ADMAi_grouped_grouped_cdna_summary_subtype.tsv
1.01 kB
SDMA_CLIP_ADMAi_grouped_grouped_cdna_summary_gene.tsv
2.90 MB
iCount RNA-maps
SDMA_CLIP_ADMAi_grouped_grouped_cdna.tar.gz
2.77 MB
iCount annotate
SDMA_CLIP_DMSO_grouped_grouped_cdna_annotated.bed.gz
22.59 MB
SDMA_CLIP_DMSO_grouped_grouped_cdna_annotated.bedgraph
82.80 MB
Paraclu
SDMA_CLIP_ADMAi_grouped_grouped_cdna_peaks.bed.gz
182.80 kB
iCount annotate
SDMA_CLIP_ADMAi_grouped_grouped_cdna_annotated.bed.gz
20.06 MB
SDMA_CLIP_ADMAi_grouped_grouped_cdna_annotated.bedgraph
73.29 MB
iCount summary
SmB_CLIP_DMSO_grouped_grouped_cdna_summary_type.tsv
449 B
SmB_CLIP_DMSO_grouped_grouped_cdna_summary_subtype.tsv
1.02 kB
SmB_CLIP_DMSO_grouped_grouped_cdna_summary_gene.tsv
3.09 MB
Paraclu
SmB_CLIP_DMSO_grouped_grouped_cdna_peaks.bed.gz
481.64 kB
iCount RNA-maps
SmB_CLIP_DMSO_grouped_grouped_cdna.tar.gz
4.34 MB
iCount annotate
SmB_CLIP_DMSO_grouped_grouped_cdna_annotated.bed.gz
47.35 MB
SmB_CLIP_DMSO_grouped_grouped_cdna_annotated.bedgraph
182.97 MB
PEKA
4mer analysis of SDMA_CLIP_DMSO_grouped_grouped_cdna.tar.gz
635.19 kB
PEKA
4mer analysis of SDMA_CLIP_ADMAi_grouped_grouped_cdna.tar.gz
634.00 kB
iCount RNA-maps
sdma-clip-dmso-2_mapped_to_genome_single.tar.gz
1.75 MB
iCount summary
sdma-clip-dmso-2_mapped_to_genome_single_summary_type.tsv
621 B
sdma-clip-dmso-2_mapped_to_genome_single_summary_subtype.tsv
1018 B
sdma-clip-dmso-2_mapped_to_genome_single_summary_gene.tsv
2.45 MB
Paraclu
sdma-clip-dmso-2_mapped_to_genome_single_peaks.bed.gz
43.26 kB
iCount summary
sdma-clip-dmso-1_mapped_to_genome_single_summary_type.tsv
621 B
sdma-clip-dmso-1_mapped_to_genome_single_summary_subtype.tsv
1019 B
sdma-clip-dmso-1_mapped_to_genome_single_summary_gene.tsv
2.28 MB
Paraclu
sdma-clip-dmso-1_mapped_to_genome_single_peaks.bed.gz
45.31 kB
iCount RNA-maps
sdma-clip-dmso-1_mapped_to_genome_single.tar.gz
1.94 MB
iCount xlsites
sdma-clip-admai-1_mapped_to_genome_skipped.bam
3.52 kB
sdma-clip-admai-1_mapped_to_genome_single.bed.gz
6.10 MB
sdma-clip-admai-1_mapped_to_genome_singleAndMulti.bed.gz
12.03 MB
sdma-clip-admai-1_mapped_to_genome_reads_single.bed.gz
6.36 MB
sdma-clip-admai-1_mapped_to_genome_single.bedgraph
28.03 MB
PEKA
4mer analysis of SmB_CLIP_DMSO_grouped_grouped_cdna.tar.gz
723.83 kB
iCount xlsites
sdma-clip-dmso-3_mapped_to_genome_skipped.bam
3.24 kB
sdma-clip-dmso-3_mapped_to_genome_single.bed.gz
7.73 MB
sdma-clip-dmso-3_mapped_to_genome_singleAndMulti.bed.gz
13.81 MB
sdma-clip-dmso-3_mapped_to_genome_reads_single.bed.gz
8.04 MB
sdma-clip-dmso-3_mapped_to_genome_single.bedgraph
36.02 MB
STAR
sdma-clip-dmso-1_trimmed_unmapped.out.mate1.fastq.gz
39.56 MB
sdma-clip-dmso-1_trimmed.bam.bai
4.24 MB
sdma-clip-dmso-1_trimmed.bam
900.43 MB
sdma-clip-dmso-1_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-1_trimmed_SJ.out.tab
998.48 kB
iCount xlsites
sdma-clip-admai-2_mapped_to_genome_skipped.bam
3.46 kB
sdma-clip-admai-2_mapped_to_genome_single.bed.gz
4.35 MB
sdma-clip-admai-2_mapped_to_genome_singleAndMulti.bed.gz
8.05 MB
sdma-clip-admai-2_mapped_to_genome_reads_single.bed.gz
4.56 MB
sdma-clip-admai-2_mapped_to_genome_single.bedgraph
19.73 MB
STAR
sdma-clip-admai-2_trimmed_unmapped.out.mate1.fastq.gz
34.46 MB
sdma-clip-admai-2_trimmed.bam.bai
4.39 MB
sdma-clip-admai-2_trimmed.bam
633.18 MB
sdma-clip-admai-2_trimmed_stats.txt
1.81 kB
sdma-clip-admai-2_trimmed_SJ.out.tab
795.89 kB
STAR
sdma-clip-admai-1_trimmed_unmapped.out.mate1.fastq.gz
51.06 MB
sdma-clip-admai-1_trimmed.bam.bai
4.49 MB
sdma-clip-admai-1_trimmed.bam
905.48 MB
sdma-clip-admai-1_trimmed_stats.txt
1.81 kB
sdma-clip-admai-1_trimmed_SJ.out.tab
1.01 MB
iCount xlsites
smb-clip-dmso-3_mapped_to_genome_skipped.bam
4.20 kB
smb-clip-dmso-3_mapped_to_genome_single.bed.gz
16.37 MB
smb-clip-dmso-3_mapped_to_genome_singleAndMulti.bed.gz
21.96 MB
smb-clip-dmso-3_mapped_to_genome_reads_single.bed.gz
16.89 MB
smb-clip-dmso-3_mapped_to_genome_single.bedgraph
77.83 MB
iCount xlsites
smb-clip-dmso-2_mapped_to_genome_skipped.bam
4.13 kB
smb-clip-dmso-2_mapped_to_genome_single.bed.gz
12.51 MB
smb-clip-dmso-2_mapped_to_genome_singleAndMulti.bed.gz
20.70 MB
smb-clip-dmso-2_mapped_to_genome_reads_single.bed.gz
12.97 MB
smb-clip-dmso-2_mapped_to_genome_single.bedgraph
58.76 MB
PEKA
4mer analysis of sdma-clip-dmso-2_mapped_to_genome.tar.gz
507.94 kB
STAR
sdma-clip-dmso-3_trimmed_unmapped.out.mate1.fastq.gz
71.32 MB
sdma-clip-dmso-3_trimmed.bam.bai
4.50 MB
sdma-clip-dmso-3_trimmed.bam
1.04 GB
sdma-clip-dmso-3_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-3_trimmed_SJ.out.tab
1.26 MB
iCount xlsites
smb-clip-dmso-1_mapped_to_genome_skipped.bam
3.96 kB
smb-clip-dmso-1_mapped_to_genome_single.bed.gz
12.24 MB
smb-clip-dmso-1_mapped_to_genome_singleAndMulti.bed.gz
18.32 MB
smb-clip-dmso-1_mapped_to_genome_reads_single.bed.gz
12.64 MB
smb-clip-dmso-1_mapped_to_genome_single.bedgraph
57.62 MB
STAR
smb-clip-dmso-2_trimmed_unmapped.out.mate1.fastq.gz
38.45 MB
smb-clip-dmso-2_trimmed.bam.bai
4.23 MB
smb-clip-dmso-2_trimmed.bam
865.77 MB
smb-clip-dmso-2_trimmed_stats.txt
1.81 kB
smb-clip-dmso-2_trimmed_SJ.out.tab
1.67 MB
STAR
smb-clip-dmso-3_trimmed_unmapped.out.mate1.fastq.gz
53.40 MB
smb-clip-dmso-3_trimmed.bam.bai
4.06 MB
smb-clip-dmso-3_trimmed.bam
1.75 GB
smb-clip-dmso-3_trimmed_stats.txt
1.82 kB
smb-clip-dmso-3_trimmed_SJ.out.tab
2.02 MB
STAR
smb-clip-dmso-1_trimmed_unmapped.out.mate1.fastq.gz
33.23 MB
smb-clip-dmso-1_trimmed.bam.bai
4.24 MB
smb-clip-dmso-1_trimmed.bam
1.08 GB
smb-clip-dmso-1_trimmed_stats.txt
1.81 kB
smb-clip-dmso-1_trimmed_SJ.out.tab
1.63 MB
STAR
sdma-clip-admai-3_trimmed_unmapped.out.mate1.fastq.gz
63.26 MB
sdma-clip-admai-3_trimmed.bam.bai
4.67 MB
sdma-clip-admai-3_trimmed.bam
975.97 MB
sdma-clip-admai-3_trimmed_stats.txt
1.81 kB
sdma-clip-admai-3_trimmed_SJ.out.tab
1013.45 kB
iCount summary
smb-clip-dmso-3_mapped_to_genome_single_summary_type.tsv
626 B
smb-clip-dmso-3_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
smb-clip-dmso-3_mapped_to_genome_single_summary_gene.tsv
2.62 MB
Cutadapt (single-end)
report.txt
652 B
sdma-clip-dmso-2_trimmed.fastq.gz
148.32 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
652 B
sdma-clip-dmso-1_trimmed.fastq.gz
173.96 MB
fastqc
Directory
iCount xlsites
sdma-clip-dmso-2_mapped_to_genome_skipped.bam
3.65 kB
sdma-clip-dmso-2_mapped_to_genome_single.bed.gz
5.33 MB
sdma-clip-dmso-2_mapped_to_genome_singleAndMulti.bed.gz
9.24 MB
sdma-clip-dmso-2_mapped_to_genome_reads_single.bed.gz
5.53 MB
sdma-clip-dmso-2_mapped_to_genome_single.bedgraph
24.28 MB
STAR
sdma-clip-dmso-2_trimmed_unmapped.out.mate1.fastq.gz
38.12 MB
sdma-clip-dmso-2_trimmed.bam.bai
4.20 MB
sdma-clip-dmso-2_trimmed.bam
626.10 MB
sdma-clip-dmso-2_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-2_trimmed_SJ.out.tab
1.03 MB
Upload iCount sample annotation
PM21165_sample_annotation_sheet.xlsx
226.51 kB
PM21165_sample_annotation_sheet.tab.gz
1.27 kB
FASTQ file (single-end)
GRI4153A1-A39_S1_L001_R1_001.fastq.gz
21.95 GB
fastqc
Directory
stderr.txt
1.21 kB
GRI4153A1-A39_S1_L001_R1_001_fastqc.zip
524.25 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
1.37 kB
FASTQ file (CLIP)
sdma-clip-admai-3-mock-input.fastq.gz
197.09 MB
fastqc
Directory
sdma-clip-admai-3-mock-input_fastqc.zip
463.81 kB
FASTQ file (CLIP)
sdma-clip-dmso-3-mock-input.fastq.gz
345.60 MB
fastqc
Directory
sdma-clip-dmso-3-mock-input_fastqc.zip
449.56 kB
Upload iCount sample annotation
pm21102_sample_annotation_sheet_complete.xlsx
226.92 kB
pm21102_sample_annotation_sheet_complete.tab.gz
1.73 kB
FASTQ file (single-end)
GRI3403A1-A39_S1_L001_R1_001.fastq.gz
16.30 GB
fastqc
Directory
stderr.txt
1.21 kB
GRI3403A1-A39_S1_L001_R1_001_fastqc.zip
485.21 kB
iCount RNA-maps
sdma-clip-admai-3-mock-input_mapped_to_genome_single.tar.gz
1.25 MB
FASTQ file (CLIP)
sdma-clip-admai-2-mock-input.fastq.gz
390.16 MB
fastqc
Directory
sdma-clip-admai-2-mock-input_fastqc.zip
452.94 kB
iCount RNA-maps
sdma-clip-admai-2-mock-input_mapped_to_genome_single.tar.gz
1.83 MB
PEKA
4mer analysis of sdma-clip-admai-2-mock-input_mapped_to_genome.tar.gz
606.74 kB
FASTQ file (CLIP)
sdma-clip-admai-1-mock-input.fastq.gz
350.10 MB
fastqc
Directory
sdma-clip-admai-1-mock-input_fastqc.zip
459.63 kB
iCount RNA-maps
sdma-clip-dmso-3-mock-input_mapped_to_genome_single.tar.gz
1.43 MB
PEKA
4mer analysis of sdma-clip-dmso-3-mock-input_mapped_to_genome.tar.gz
563.96 kB
FASTQ file (CLIP)
sdma-clip-dmso-2-mock-input.fastq.gz
288.91 MB
fastqc
Directory
sdma-clip-dmso-2-mock-input_fastqc.zip
453.96 kB
FASTQ file (CLIP)
sdma-clip-dmso-2.fastq.gz
145.65 MB
fastqc
Directory
sdma-clip-dmso-2_fastqc.zip
501.86 kB
FASTQ file (CLIP)
sdma-clip-dmso-1.fastq.gz
167.44 MB
fastqc
Directory
sdma-clip-dmso-1_fastqc.zip
521.72 kB
FASTQ file (CLIP)
sdma-clip-admai-1.fastq.gz
203.97 MB
fastqc
Directory
sdma-clip-admai-1_fastqc.zip
540.30 kB
FASTQ file (CLIP)
sdma-clip-admai-2.fastq.gz
130.81 MB
fastqc
Directory
sdma-clip-admai-2_fastqc.zip
508.31 kB
FASTQ file (CLIP)
smb-clip-dmso-1.fastq.gz
231.20 MB
fastqc
Directory
smb-clip-dmso-1_fastqc.zip
522.03 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
1.67 kB
FASTQ file (CLIP)
smb-clip-dmso-3.fastq.gz
347.98 MB
fastqc
Directory
smb-clip-dmso-3_fastqc.zip
538.61 kB
FASTQ file (CLIP)
demux_nomatch.fastq.gz
788.39 MB
fastqc
Directory
demux_nomatch_fastqc.zip
489.57 kB
iCount summary
sdma-clip-dmso-1-mock-input_mapped_to_genome_single_summary_type.tsv
623 B
sdma-clip-dmso-1-mock-input_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-dmso-1-mock-input_mapped_to_genome_single_summary_gene.tsv
2.63 MB
iCount RNA-maps
sdma-clip-dmso-1-mock-input_mapped_to_genome_single.tar.gz
1.85 MB
PEKA
4mer analysis of sdma-clip-dmso-1-mock-input_mapped_to_genome.tar.gz
601.72 kB
iCount annotate
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_annotated.bed.gz
43.34 MB
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_annotated.bedgraph
168.01 MB
FASTQ file (CLIP)
smb-clip-dmso-2.fastq.gz
221.72 MB
fastqc
Directory
smb-clip-dmso-2_fastqc.zip
495.05 kB
iCount RNA-maps
smb-clip-dmso-3_mapped_to_genome_single.tar.gz
2.96 MB
Cutadapt (single-end)
report.txt
651 B
smb-clip-dmso-3_trimmed.fastq.gz
362.52 MB
fastqc
Directory
Paraclu
smb-clip-dmso-3_mapped_to_genome_single_peaks.bed.gz
176.37 kB
PEKA
4mer analysis of smb-clip-dmso-3_mapped_to_genome.tar.gz
623.78 kB
Cutadapt (single-end)
report.txt
651 B
smb-clip-dmso-2_trimmed.fastq.gz
228.29 MB
fastqc
Directory
iCount summary
smb-clip-dmso-2_mapped_to_genome_single_summary_type.tsv
627 B
smb-clip-dmso-2_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
smb-clip-dmso-2_mapped_to_genome_single_summary_gene.tsv
2.62 MB
iCount RNA-maps
smb-clip-dmso-2_mapped_to_genome_single.tar.gz
2.59 MB
Paraclu
smb-clip-dmso-2_mapped_to_genome_single_peaks.bed.gz
96.28 kB
PEKA
4mer analysis of smb-clip-dmso-2_mapped_to_genome.tar.gz
586.72 kB
Cutadapt (single-end)
report.txt
651 B
smb-clip-dmso-1_trimmed.fastq.gz
239.61 MB
fastqc
Directory
iCount summary
smb-clip-dmso-1_mapped_to_genome_single_summary_type.tsv
626 B
smb-clip-dmso-1_mapped_to_genome_single_summary_subtype.tsv
1023 B
smb-clip-dmso-1_mapped_to_genome_single_summary_gene.tsv
2.53 MB
Paraclu
smb-clip-dmso-1_mapped_to_genome_single_peaks.bed.gz
90.96 kB
iCount RNA-maps
smb-clip-dmso-1_mapped_to_genome_single.tar.gz
2.55 MB
PEKA
4mer analysis of smb-clip-dmso-1_mapped_to_genome.tar.gz
583.21 kB
FASTQ file (CLIP)
sdma-clip-admai-3.fastq.gz
205.87 MB
fastqc
Directory
sdma-clip-admai-3_fastqc.zip
539.23 kB
Cutadapt (single-end)
report.txt
653 B
sdma-clip-admai-3_trimmed.fastq.gz
207.69 MB
fastqc
Directory
iCount xlsites
sdma-clip-admai-3_mapped_to_genome_skipped.bam
3.47 kB
sdma-clip-admai-3_mapped_to_genome_single.bed.gz
6.15 MB
sdma-clip-admai-3_mapped_to_genome_singleAndMulti.bed.gz
12.04 MB
sdma-clip-admai-3_mapped_to_genome_reads_single.bed.gz
6.39 MB
sdma-clip-admai-3_mapped_to_genome_single.bedgraph
28.41 MB
iCount summary
sdma-clip-admai-3_mapped_to_genome_single_summary_type.tsv
619 B
sdma-clip-admai-3_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-admai-3_mapped_to_genome_single_summary_gene.tsv
2.38 MB
iCount summary
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_summary_type.tsv
446 B
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_summary_subtype.tsv
1.02 kB
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_summary_gene.tsv
3.16 MB
iCount RNA-maps
sdma-clip-admai-3_mapped_to_genome_single.tar.gz
1.73 MB
Paraclu
sdma-clip-admai-3_mapped_to_genome_single_peaks.bed.gz
49.67 kB
PEKA
4mer analysis of sdma-clip-admai-3_mapped_to_genome.tar.gz
532.10 kB
iCount group
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna.bed.gz
35.49 MB
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_reads.bed.gz
37.85 MB
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna.bedgraph
168.01 MB
Paraclu
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_peaks.bed.gz
272.58 kB
iCount RNA-maps
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna.tar.gz
2.72 MB
PEKA
4mer analysis of SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna.tar.gz
719.50 kB
FASTQ file (CLIP)
demux_nomatch.fastq.gz
8.32 GB
fastqc
Directory
demux_nomatch_fastqc.zip
572.13 kB
Cutadapt (single-end)
report.txt
653 B
sdma-clip-admai-2_trimmed.fastq.gz
135.01 MB
fastqc
Directory
iCount summary
sdma-clip-admai-2_mapped_to_genome_single_summary_type.tsv
622 B
sdma-clip-admai-2_mapped_to_genome_single_summary_subtype.tsv
1017 B
sdma-clip-admai-2_mapped_to_genome_single_summary_gene.tsv
2.32 MB
Cutadapt (single-end)
report.txt
664 B
sdma-clip-admai-3-mock-input_trimmed.fastq.gz
203.71 MB
fastqc
Directory
Paraclu
sdma-clip-admai-2_mapped_to_genome_single_peaks.bed.gz
21.45 kB
iCount RNA-maps
sdma-clip-admai-2_mapped_to_genome_single.tar.gz
1.31 MB
PEKA
4mer analysis of sdma-clip-admai-2_mapped_to_genome.tar.gz
488.55 kB
Cutadapt (single-end)
report.txt
664 B
sdma-clip-admai-2-mock-input_trimmed.fastq.gz
404.01 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
654 B
sdma-clip-admai-1_trimmed.fastq.gz
191.98 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
664 B
sdma-clip-admai-1-mock-input_trimmed.fastq.gz
362.49 MB
fastqc
Directory
iCount summary
sdma-clip-admai-1_mapped_to_genome_single_summary_type.tsv
618 B
sdma-clip-admai-1_mapped_to_genome_single_summary_subtype.tsv
1020 B
sdma-clip-admai-1_mapped_to_genome_single_summary_gene.tsv
2.43 MB
Paraclu
sdma-clip-admai-1_mapped_to_genome_single_peaks.bed.gz
46.63 kB
iCount RNA-maps
sdma-clip-admai-1_mapped_to_genome_single.tar.gz
1.87 MB
PEKA
4mer analysis of sdma-clip-admai-1_mapped_to_genome.tar.gz
526.47 kB
FASTQ file (CLIP)
sdma-clip-dmso-3.fastq.gz
237.94 MB
fastqc
Directory
sdma-clip-dmso-3_fastqc.zip
506.09 kB
Cutadapt (single-end)
report.txt
663 B
sdma-clip-dmso-3-mock-input_trimmed.fastq.gz
355.77 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
663 B
sdma-clip-dmso-2-mock-input_trimmed.fastq.gz
298.35 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
652 B
sdma-clip-dmso-3_trimmed.fastq.gz
242.81 MB
fastqc
Directory
iCount summary
sdma-clip-dmso-3_mapped_to_genome_single_summary_type.tsv
627 B
sdma-clip-dmso-3_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-dmso-3_mapped_to_genome_single_summary_gene.tsv
2.44 MB
Paraclu
sdma-clip-dmso-3_mapped_to_genome_single_peaks.bed.gz
87.16 kB
PEKA
4mer analysis of sdma-clip-dmso-3_mapped_to_genome.tar.gz
546.42 kB
Cutadapt (single-end)
report.txt
663 B
sdma-clip-dmso-1-mock-input_trimmed.fastq.gz
351.12 MB
fastqc
Directory
STAR
sdma-clip-admai-3-mock-input_trimmed_unmapped.out.mate1.fastq.gz
73.95 MB
sdma-clip-admai-3-mock-input_trimmed.bam.bai
3.83 MB
sdma-clip-admai-3-mock-input_trimmed.bam
439.52 MB
sdma-clip-admai-3-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-admai-3-mock-input_trimmed_SJ.out.tab
976.32 kB
STAR
sdma-clip-admai-2-mock-input_trimmed_unmapped.out.mate1.fastq.gz
129.44 MB
sdma-clip-admai-2-mock-input_trimmed.bam.bai
3.81 MB
sdma-clip-admai-2-mock-input_trimmed.bam
930.50 MB
sdma-clip-admai-2-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-admai-2-mock-input_trimmed_SJ.out.tab
1.85 MB
STAR
sdma-clip-admai-1-mock-input_trimmed_unmapped.out.mate1.fastq.gz
113.71 MB
sdma-clip-admai-1-mock-input_trimmed.bam.bai
3.63 MB
sdma-clip-admai-1-mock-input_trimmed.bam
826.01 MB
sdma-clip-admai-1-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-admai-1-mock-input_trimmed_SJ.out.tab
1.68 MB
STAR
sdma-clip-dmso-3-mock-input_trimmed_unmapped.out.mate1.fastq.gz
119.14 MB
sdma-clip-dmso-3-mock-input_trimmed.bam.bai
4.14 MB
sdma-clip-dmso-3-mock-input_trimmed.bam
740.13 MB
sdma-clip-dmso-3-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-3-mock-input_trimmed_SJ.out.tab
1.11 MB
STAR
sdma-clip-dmso-2-mock-input_trimmed_unmapped.out.mate1.fastq.gz
96.97 MB
sdma-clip-dmso-2-mock-input_trimmed.bam.bai
3.74 MB
sdma-clip-dmso-2-mock-input_trimmed.bam
644.29 MB
sdma-clip-dmso-2-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-2-mock-input_trimmed_SJ.out.tab
1.26 MB
STAR
sdma-clip-dmso-1-mock-input_trimmed_unmapped.out.mate1.fastq.gz
104.93 MB
sdma-clip-dmso-1-mock-input_trimmed.bam.bai
3.74 MB
sdma-clip-dmso-1-mock-input_trimmed.bam
824.87 MB
sdma-clip-dmso-1-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-1-mock-input_trimmed_SJ.out.tab
1.69 MB
iCount xlsites
sdma-clip-admai-3-mock-input_mapped_to_genome_skipped.bam
3.99 kB
sdma-clip-admai-3-mock-input_mapped_to_genome_single.bed.gz
8.21 MB
sdma-clip-admai-3-mock-input_mapped_to_genome_singleAndMulti.bed.gz
11.79 MB
sdma-clip-admai-3-mock-input_mapped_to_genome_reads_single.bed.gz
8.68 MB
sdma-clip-admai-3-mock-input_mapped_to_genome_single.bedgraph
37.83 MB
iCount xlsites
sdma-clip-dmso-3-mock-input_mapped_to_genome_skipped.bam
4.10 kB
sdma-clip-dmso-3-mock-input_mapped_to_genome_single.bed.gz
10.47 MB
sdma-clip-dmso-3-mock-input_mapped_to_genome_singleAndMulti.bed.gz
16.36 MB
sdma-clip-dmso-3-mock-input_mapped_to_genome_reads_single.bed.gz
11.39 MB
sdma-clip-dmso-3-mock-input_mapped_to_genome_single.bedgraph
48.05 MB
iCount xlsites
sdma-clip-admai-1-mock-input_mapped_to_genome_skipped.bam
5.55 kB
sdma-clip-admai-1-mock-input_mapped_to_genome_single.bed.gz
15.30 MB
sdma-clip-admai-1-mock-input_mapped_to_genome_singleAndMulti.bed.gz
19.99 MB
sdma-clip-admai-1-mock-input_mapped_to_genome_reads_single.bed.gz
16.09 MB
sdma-clip-admai-1-mock-input_mapped_to_genome_single.bedgraph
71.61 MB
iCount xlsites
sdma-clip-admai-2-mock-input_mapped_to_genome_skipped.bam
5.08 kB
sdma-clip-admai-2-mock-input_mapped_to_genome_single.bed.gz
16.30 MB
sdma-clip-admai-2-mock-input_mapped_to_genome_singleAndMulti.bed.gz
21.32 MB
sdma-clip-admai-2-mock-input_mapped_to_genome_reads_single.bed.gz
17.12 MB
sdma-clip-admai-2-mock-input_mapped_to_genome_single.bedgraph
76.24 MB
Paraclu
sdma-clip-admai-2-mock-input_mapped_to_genome_single_peaks.bed.gz
61.38 kB
iCount xlsites
sdma-clip-dmso-2-mock-input_mapped_to_genome_skipped.bam
4.16 kB
sdma-clip-dmso-2-mock-input_mapped_to_genome_single.bed.gz
12.17 MB
sdma-clip-dmso-2-mock-input_mapped_to_genome_singleAndMulti.bed.gz
16.64 MB
sdma-clip-dmso-2-mock-input_mapped_to_genome_reads_single.bed.gz
12.97 MB
sdma-clip-dmso-2-mock-input_mapped_to_genome_single.bedgraph
56.52 MB
iCount RNA-maps
sdma-clip-dmso-2-mock-input_mapped_to_genome_single.tar.gz
1.58 MB
iCount xlsites
sdma-clip-dmso-1-mock-input_mapped_to_genome_skipped.bam
4.70 kB
sdma-clip-dmso-1-mock-input_mapped_to_genome_single.bed.gz
15.01 MB
sdma-clip-dmso-1-mock-input_mapped_to_genome_singleAndMulti.bed.gz
20.11 MB
sdma-clip-dmso-1-mock-input_mapped_to_genome_reads_single.bed.gz
15.86 MB
sdma-clip-dmso-1-mock-input_mapped_to_genome_single.bedgraph
70.23 MB
Paraclu
sdma-clip-dmso-1-mock-input_mapped_to_genome_single_peaks.bed.gz
66.37 kB
iCount summary
sdma-clip-admai-3-mock-input_mapped_to_genome_single_summary_type.tsv
619 B
sdma-clip-admai-3-mock-input_mapped_to_genome_single_summary_subtype.tsv
1023 B
sdma-clip-admai-3-mock-input_mapped_to_genome_single_summary_gene.tsv
2.36 MB
Paraclu
sdma-clip-admai-3-mock-input_mapped_to_genome_single_peaks.bed.gz
25.38 kB
PEKA
4mer analysis of sdma-clip-admai-3-mock-input_mapped_to_genome.tar.gz
517.01 kB
Paraclu
sdma-clip-dmso-3-mock-input_mapped_to_genome_single_peaks.bed.gz
65.46 kB
iCount summary
sdma-clip-dmso-3-mock-input_mapped_to_genome_single_summary_type.tsv
623 B
sdma-clip-dmso-3-mock-input_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-dmso-3-mock-input_mapped_to_genome_single_summary_gene.tsv
2.58 MB
Paraclu
sdma-clip-admai-1-mock-input_mapped_to_genome_single_peaks.bed.gz
56.06 kB
iCount summary
sdma-clip-admai-1-mock-input_mapped_to_genome_single_summary_type.tsv
622 B
sdma-clip-admai-1-mock-input_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-admai-1-mock-input_mapped_to_genome_single_summary_gene.tsv
2.58 MB
PEKA
4mer analysis of sdma-clip-admai-1-mock-input_mapped_to_genome.tar.gz
606.62 kB
iCount RNA-maps
sdma-clip-admai-1-mock-input_mapped_to_genome_single.tar.gz
1.77 MB
iCount summary
sdma-clip-admai-2-mock-input_mapped_to_genome_single_summary_type.tsv
624 B
sdma-clip-admai-2-mock-input_mapped_to_genome_single_summary_subtype.tsv
1022 B
sdma-clip-admai-2-mock-input_mapped_to_genome_single_summary_gene.tsv
2.65 MB
iCount summary
sdma-clip-dmso-2-mock-input_mapped_to_genome_single_summary_type.tsv
618 B
sdma-clip-dmso-2-mock-input_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-dmso-2-mock-input_mapped_to_genome_single_summary_gene.tsv
2.58 MB
Paraclu
sdma-clip-dmso-2-mock-input_mapped_to_genome_single_peaks.bed.gz
49.14 kB
PEKA
4mer analysis of sdma-clip-dmso-2-mock-input_mapped_to_genome.tar.gz
570.89 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)
demux_nomatch.fastq.gz
8.32 GB
fastqc
Directory
demux_nomatch_fastqc.zip
572.13 kB

SDMA_CLIP_ADMAi_3_mock_input

FASTQ file (CLIP)
sdma-clip-admai-3-mock-input.fastq.gz
197.09 MB
fastqc
Directory
sdma-clip-admai-3-mock-input_fastqc.zip
463.81 kB
iCount RNA-maps
sdma-clip-admai-3-mock-input_mapped_to_genome_single.tar.gz
1.25 MB
Cutadapt (single-end)
report.txt
664 B
sdma-clip-admai-3-mock-input_trimmed.fastq.gz
203.71 MB
fastqc
Directory
STAR
sdma-clip-admai-3-mock-input_trimmed_unmapped.out.mate1.fastq.gz
73.95 MB
sdma-clip-admai-3-mock-input_trimmed.bam.bai
3.83 MB
sdma-clip-admai-3-mock-input_trimmed.bam
439.52 MB
sdma-clip-admai-3-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-admai-3-mock-input_trimmed_SJ.out.tab
976.32 kB
iCount xlsites
sdma-clip-admai-3-mock-input_mapped_to_genome_skipped.bam
3.99 kB
sdma-clip-admai-3-mock-input_mapped_to_genome_single.bed.gz
8.21 MB
sdma-clip-admai-3-mock-input_mapped_to_genome_singleAndMulti.bed.gz
11.79 MB
sdma-clip-admai-3-mock-input_mapped_to_genome_reads_single.bed.gz
8.68 MB
sdma-clip-admai-3-mock-input_mapped_to_genome_single.bedgraph
37.83 MB
iCount summary
sdma-clip-admai-3-mock-input_mapped_to_genome_single_summary_type.tsv
619 B
sdma-clip-admai-3-mock-input_mapped_to_genome_single_summary_subtype.tsv
1023 B
sdma-clip-admai-3-mock-input_mapped_to_genome_single_summary_gene.tsv
2.36 MB
Paraclu
sdma-clip-admai-3-mock-input_mapped_to_genome_single_peaks.bed.gz
25.38 kB
PEKA
4mer analysis of sdma-clip-admai-3-mock-input_mapped_to_genome.tar.gz
517.01 kB

SDMA_CLIP_ADMAi_1_mock_input

FASTQ file (CLIP)
sdma-clip-admai-1-mock-input.fastq.gz
350.10 MB
fastqc
Directory
sdma-clip-admai-1-mock-input_fastqc.zip
459.63 kB
Cutadapt (single-end)
report.txt
664 B
sdma-clip-admai-1-mock-input_trimmed.fastq.gz
362.49 MB
fastqc
Directory
STAR
sdma-clip-admai-1-mock-input_trimmed_unmapped.out.mate1.fastq.gz
113.71 MB
sdma-clip-admai-1-mock-input_trimmed.bam.bai
3.63 MB
sdma-clip-admai-1-mock-input_trimmed.bam
826.01 MB
sdma-clip-admai-1-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-admai-1-mock-input_trimmed_SJ.out.tab
1.68 MB
iCount xlsites
sdma-clip-admai-1-mock-input_mapped_to_genome_skipped.bam
5.55 kB
sdma-clip-admai-1-mock-input_mapped_to_genome_single.bed.gz
15.30 MB
sdma-clip-admai-1-mock-input_mapped_to_genome_singleAndMulti.bed.gz
19.99 MB
sdma-clip-admai-1-mock-input_mapped_to_genome_reads_single.bed.gz
16.09 MB
sdma-clip-admai-1-mock-input_mapped_to_genome_single.bedgraph
71.61 MB
Paraclu
sdma-clip-admai-1-mock-input_mapped_to_genome_single_peaks.bed.gz
56.06 kB
iCount summary
sdma-clip-admai-1-mock-input_mapped_to_genome_single_summary_type.tsv
622 B
sdma-clip-admai-1-mock-input_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-admai-1-mock-input_mapped_to_genome_single_summary_gene.tsv
2.58 MB
PEKA
4mer analysis of sdma-clip-admai-1-mock-input_mapped_to_genome.tar.gz
606.62 kB
iCount RNA-maps
sdma-clip-admai-1-mock-input_mapped_to_genome_single.tar.gz
1.77 MB

SDMA_CLIP_DMSO_3_mock_input

FASTQ file (CLIP)
sdma-clip-dmso-3-mock-input.fastq.gz
345.60 MB
fastqc
Directory
sdma-clip-dmso-3-mock-input_fastqc.zip
449.56 kB
iCount RNA-maps
sdma-clip-dmso-3-mock-input_mapped_to_genome_single.tar.gz
1.43 MB
PEKA
4mer analysis of sdma-clip-dmso-3-mock-input_mapped_to_genome.tar.gz
563.96 kB
Cutadapt (single-end)
report.txt
663 B
sdma-clip-dmso-3-mock-input_trimmed.fastq.gz
355.77 MB
fastqc
Directory
STAR
sdma-clip-dmso-3-mock-input_trimmed_unmapped.out.mate1.fastq.gz
119.14 MB
sdma-clip-dmso-3-mock-input_trimmed.bam.bai
4.14 MB
sdma-clip-dmso-3-mock-input_trimmed.bam
740.13 MB
sdma-clip-dmso-3-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-3-mock-input_trimmed_SJ.out.tab
1.11 MB
iCount xlsites
sdma-clip-dmso-3-mock-input_mapped_to_genome_skipped.bam
4.10 kB
sdma-clip-dmso-3-mock-input_mapped_to_genome_single.bed.gz
10.47 MB
sdma-clip-dmso-3-mock-input_mapped_to_genome_singleAndMulti.bed.gz
16.36 MB
sdma-clip-dmso-3-mock-input_mapped_to_genome_reads_single.bed.gz
11.39 MB
sdma-clip-dmso-3-mock-input_mapped_to_genome_single.bedgraph
48.05 MB
Paraclu
sdma-clip-dmso-3-mock-input_mapped_to_genome_single_peaks.bed.gz
65.46 kB
iCount summary
sdma-clip-dmso-3-mock-input_mapped_to_genome_single_summary_type.tsv
623 B
sdma-clip-dmso-3-mock-input_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-dmso-3-mock-input_mapped_to_genome_single_summary_gene.tsv
2.58 MB

SDMA_CLIP_ADMAi_2_mock_input

FASTQ file (CLIP)
sdma-clip-admai-2-mock-input.fastq.gz
390.16 MB
fastqc
Directory
sdma-clip-admai-2-mock-input_fastqc.zip
452.94 kB
iCount RNA-maps
sdma-clip-admai-2-mock-input_mapped_to_genome_single.tar.gz
1.83 MB
PEKA
4mer analysis of sdma-clip-admai-2-mock-input_mapped_to_genome.tar.gz
606.74 kB
Cutadapt (single-end)
report.txt
664 B
sdma-clip-admai-2-mock-input_trimmed.fastq.gz
404.01 MB
fastqc
Directory
STAR
sdma-clip-admai-2-mock-input_trimmed_unmapped.out.mate1.fastq.gz
129.44 MB
sdma-clip-admai-2-mock-input_trimmed.bam.bai
3.81 MB
sdma-clip-admai-2-mock-input_trimmed.bam
930.50 MB
sdma-clip-admai-2-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-admai-2-mock-input_trimmed_SJ.out.tab
1.85 MB
iCount xlsites
sdma-clip-admai-2-mock-input_mapped_to_genome_skipped.bam
5.08 kB
sdma-clip-admai-2-mock-input_mapped_to_genome_single.bed.gz
16.30 MB
sdma-clip-admai-2-mock-input_mapped_to_genome_singleAndMulti.bed.gz
21.32 MB
sdma-clip-admai-2-mock-input_mapped_to_genome_reads_single.bed.gz
17.12 MB
sdma-clip-admai-2-mock-input_mapped_to_genome_single.bedgraph
76.24 MB
Paraclu
sdma-clip-admai-2-mock-input_mapped_to_genome_single_peaks.bed.gz
61.38 kB
iCount summary
sdma-clip-admai-2-mock-input_mapped_to_genome_single_summary_type.tsv
624 B
sdma-clip-admai-2-mock-input_mapped_to_genome_single_summary_subtype.tsv
1022 B
sdma-clip-admai-2-mock-input_mapped_to_genome_single_summary_gene.tsv
2.65 MB

SDMA_CLIP_DMSO_2_mock_input

FASTQ file (CLIP)
sdma-clip-dmso-2-mock-input.fastq.gz
288.91 MB
fastqc
Directory
sdma-clip-dmso-2-mock-input_fastqc.zip
453.96 kB
Cutadapt (single-end)
report.txt
663 B
sdma-clip-dmso-2-mock-input_trimmed.fastq.gz
298.35 MB
fastqc
Directory
STAR
sdma-clip-dmso-2-mock-input_trimmed_unmapped.out.mate1.fastq.gz
96.97 MB
sdma-clip-dmso-2-mock-input_trimmed.bam.bai
3.74 MB
sdma-clip-dmso-2-mock-input_trimmed.bam
644.29 MB
sdma-clip-dmso-2-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-2-mock-input_trimmed_SJ.out.tab
1.26 MB
iCount xlsites
sdma-clip-dmso-2-mock-input_mapped_to_genome_skipped.bam
4.16 kB
sdma-clip-dmso-2-mock-input_mapped_to_genome_single.bed.gz
12.17 MB
sdma-clip-dmso-2-mock-input_mapped_to_genome_singleAndMulti.bed.gz
16.64 MB
sdma-clip-dmso-2-mock-input_mapped_to_genome_reads_single.bed.gz
12.97 MB
sdma-clip-dmso-2-mock-input_mapped_to_genome_single.bedgraph
56.52 MB
iCount RNA-maps
sdma-clip-dmso-2-mock-input_mapped_to_genome_single.tar.gz
1.58 MB
iCount summary
sdma-clip-dmso-2-mock-input_mapped_to_genome_single_summary_type.tsv
618 B
sdma-clip-dmso-2-mock-input_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-dmso-2-mock-input_mapped_to_genome_single_summary_gene.tsv
2.58 MB
Paraclu
sdma-clip-dmso-2-mock-input_mapped_to_genome_single_peaks.bed.gz
49.14 kB
PEKA
4mer analysis of sdma-clip-dmso-2-mock-input_mapped_to_genome.tar.gz
570.89 kB

SDMA_CLIP_DMSO_1_mock_input

FASTQ file (CLIP)
sdma-clip-dmso-1-mock-input.fastq.gz
339.67 MB
fastqc
Directory
sdma-clip-dmso-1-mock-input_fastqc.zip
458.60 kB
iCount summary
sdma-clip-dmso-1-mock-input_mapped_to_genome_single_summary_type.tsv
623 B
sdma-clip-dmso-1-mock-input_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-dmso-1-mock-input_mapped_to_genome_single_summary_gene.tsv
2.63 MB
iCount RNA-maps
sdma-clip-dmso-1-mock-input_mapped_to_genome_single.tar.gz
1.85 MB
PEKA
4mer analysis of sdma-clip-dmso-1-mock-input_mapped_to_genome.tar.gz
601.72 kB
Cutadapt (single-end)
report.txt
663 B
sdma-clip-dmso-1-mock-input_trimmed.fastq.gz
351.12 MB
fastqc
Directory
STAR
sdma-clip-dmso-1-mock-input_trimmed_unmapped.out.mate1.fastq.gz
104.93 MB
sdma-clip-dmso-1-mock-input_trimmed.bam.bai
3.74 MB
sdma-clip-dmso-1-mock-input_trimmed.bam
824.87 MB
sdma-clip-dmso-1-mock-input_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-1-mock-input_trimmed_SJ.out.tab
1.69 MB
iCount xlsites
sdma-clip-dmso-1-mock-input_mapped_to_genome_skipped.bam
4.70 kB
sdma-clip-dmso-1-mock-input_mapped_to_genome_single.bed.gz
15.01 MB
sdma-clip-dmso-1-mock-input_mapped_to_genome_singleAndMulti.bed.gz
20.11 MB
sdma-clip-dmso-1-mock-input_mapped_to_genome_reads_single.bed.gz
15.86 MB
sdma-clip-dmso-1-mock-input_mapped_to_genome_single.bedgraph
70.23 MB
Paraclu
sdma-clip-dmso-1-mock-input_mapped_to_genome_single_peaks.bed.gz
66.37 kB

PM21102_fastq

FASTQ file (single-end)
GRI3403A1-A39_S1_L001_R1_001.fastq.gz
16.30 GB
fastqc
Directory
stderr.txt
1.21 kB
GRI3403A1-A39_S1_L001_R1_001_fastqc.zip
485.21 kB

SDMA_CLIP_ADMAi_3

STAR
sdma-clip-admai-3_trimmed_unmapped.out.mate1.fastq.gz
63.26 MB
sdma-clip-admai-3_trimmed.bam.bai
4.67 MB
sdma-clip-admai-3_trimmed.bam
975.97 MB
sdma-clip-admai-3_trimmed_stats.txt
1.81 kB
sdma-clip-admai-3_trimmed_SJ.out.tab
1013.45 kB
FASTQ file (CLIP)
sdma-clip-admai-3.fastq.gz
205.87 MB
fastqc
Directory
sdma-clip-admai-3_fastqc.zip
539.23 kB
Cutadapt (single-end)
report.txt
653 B
sdma-clip-admai-3_trimmed.fastq.gz
207.69 MB
fastqc
Directory
iCount xlsites
sdma-clip-admai-3_mapped_to_genome_skipped.bam
3.47 kB
sdma-clip-admai-3_mapped_to_genome_single.bed.gz
6.15 MB
sdma-clip-admai-3_mapped_to_genome_singleAndMulti.bed.gz
12.04 MB
sdma-clip-admai-3_mapped_to_genome_reads_single.bed.gz
6.39 MB
sdma-clip-admai-3_mapped_to_genome_single.bedgraph
28.41 MB
iCount summary
sdma-clip-admai-3_mapped_to_genome_single_summary_type.tsv
619 B
sdma-clip-admai-3_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-admai-3_mapped_to_genome_single_summary_gene.tsv
2.38 MB
iCount RNA-maps
sdma-clip-admai-3_mapped_to_genome_single.tar.gz
1.73 MB
Paraclu
sdma-clip-admai-3_mapped_to_genome_single_peaks.bed.gz
49.67 kB
PEKA
4mer analysis of sdma-clip-admai-3_mapped_to_genome.tar.gz
532.10 kB

SmB_CLIP_DMSO_1

iCount xlsites
smb-clip-dmso-1_mapped_to_genome_skipped.bam
3.96 kB
smb-clip-dmso-1_mapped_to_genome_single.bed.gz
12.24 MB
smb-clip-dmso-1_mapped_to_genome_singleAndMulti.bed.gz
18.32 MB
smb-clip-dmso-1_mapped_to_genome_reads_single.bed.gz
12.64 MB
smb-clip-dmso-1_mapped_to_genome_single.bedgraph
57.62 MB
STAR
smb-clip-dmso-1_trimmed_unmapped.out.mate1.fastq.gz
33.23 MB
smb-clip-dmso-1_trimmed.bam.bai
4.24 MB
smb-clip-dmso-1_trimmed.bam
1.08 GB
smb-clip-dmso-1_trimmed_stats.txt
1.81 kB
smb-clip-dmso-1_trimmed_SJ.out.tab
1.63 MB
FASTQ file (CLIP)
smb-clip-dmso-1.fastq.gz
231.20 MB
fastqc
Directory
smb-clip-dmso-1_fastqc.zip
522.03 kB
Cutadapt (single-end)
report.txt
651 B
smb-clip-dmso-1_trimmed.fastq.gz
239.61 MB
fastqc
Directory
iCount summary
smb-clip-dmso-1_mapped_to_genome_single_summary_type.tsv
626 B
smb-clip-dmso-1_mapped_to_genome_single_summary_subtype.tsv
1023 B
smb-clip-dmso-1_mapped_to_genome_single_summary_gene.tsv
2.53 MB
Paraclu
smb-clip-dmso-1_mapped_to_genome_single_peaks.bed.gz
90.96 kB
iCount RNA-maps
smb-clip-dmso-1_mapped_to_genome_single.tar.gz
2.55 MB
PEKA
4mer analysis of smb-clip-dmso-1_mapped_to_genome.tar.gz
583.21 kB

demux_nomatch.fastq.gz

FASTQ file (CLIP)
demux_nomatch.fastq.gz
788.39 MB
fastqc
Directory
demux_nomatch_fastqc.zip
489.57 kB

SmB_CLIP_DMSO_2

iCount xlsites
smb-clip-dmso-2_mapped_to_genome_skipped.bam
4.13 kB
smb-clip-dmso-2_mapped_to_genome_single.bed.gz
12.51 MB
smb-clip-dmso-2_mapped_to_genome_singleAndMulti.bed.gz
20.70 MB
smb-clip-dmso-2_mapped_to_genome_reads_single.bed.gz
12.97 MB
smb-clip-dmso-2_mapped_to_genome_single.bedgraph
58.76 MB
STAR
smb-clip-dmso-2_trimmed_unmapped.out.mate1.fastq.gz
38.45 MB
smb-clip-dmso-2_trimmed.bam.bai
4.23 MB
smb-clip-dmso-2_trimmed.bam
865.77 MB
smb-clip-dmso-2_trimmed_stats.txt
1.81 kB
smb-clip-dmso-2_trimmed_SJ.out.tab
1.67 MB
FASTQ file (CLIP)
smb-clip-dmso-2.fastq.gz
221.72 MB
fastqc
Directory
smb-clip-dmso-2_fastqc.zip
495.05 kB
Cutadapt (single-end)
report.txt
651 B
smb-clip-dmso-2_trimmed.fastq.gz
228.29 MB
fastqc
Directory
iCount summary
smb-clip-dmso-2_mapped_to_genome_single_summary_type.tsv
627 B
smb-clip-dmso-2_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
smb-clip-dmso-2_mapped_to_genome_single_summary_gene.tsv
2.62 MB
iCount RNA-maps
smb-clip-dmso-2_mapped_to_genome_single.tar.gz
2.59 MB
Paraclu
smb-clip-dmso-2_mapped_to_genome_single_peaks.bed.gz
96.28 kB
PEKA
4mer analysis of smb-clip-dmso-2_mapped_to_genome.tar.gz
586.72 kB

SmB_CLIP_DMSO_3

iCount xlsites
smb-clip-dmso-3_mapped_to_genome_skipped.bam
4.20 kB
smb-clip-dmso-3_mapped_to_genome_single.bed.gz
16.37 MB
smb-clip-dmso-3_mapped_to_genome_singleAndMulti.bed.gz
21.96 MB
smb-clip-dmso-3_mapped_to_genome_reads_single.bed.gz
16.89 MB
smb-clip-dmso-3_mapped_to_genome_single.bedgraph
77.83 MB
STAR
smb-clip-dmso-3_trimmed_unmapped.out.mate1.fastq.gz
53.40 MB
smb-clip-dmso-3_trimmed.bam.bai
4.06 MB
smb-clip-dmso-3_trimmed.bam
1.75 GB
smb-clip-dmso-3_trimmed_stats.txt
1.82 kB
smb-clip-dmso-3_trimmed_SJ.out.tab
2.02 MB
iCount summary
smb-clip-dmso-3_mapped_to_genome_single_summary_type.tsv
626 B
smb-clip-dmso-3_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
smb-clip-dmso-3_mapped_to_genome_single_summary_gene.tsv
2.62 MB
FASTQ file (CLIP)
smb-clip-dmso-3.fastq.gz
347.98 MB
fastqc
Directory
smb-clip-dmso-3_fastqc.zip
538.61 kB
iCount RNA-maps
smb-clip-dmso-3_mapped_to_genome_single.tar.gz
2.96 MB
Cutadapt (single-end)
report.txt
651 B
smb-clip-dmso-3_trimmed.fastq.gz
362.52 MB
fastqc
Directory
Paraclu
smb-clip-dmso-3_mapped_to_genome_single_peaks.bed.gz
176.37 kB
PEKA
4mer analysis of smb-clip-dmso-3_mapped_to_genome.tar.gz
623.78 kB

SDMA_CLIP_ADMAi_2

iCount xlsites
sdma-clip-admai-2_mapped_to_genome_skipped.bam
3.46 kB
sdma-clip-admai-2_mapped_to_genome_single.bed.gz
4.35 MB
sdma-clip-admai-2_mapped_to_genome_singleAndMulti.bed.gz
8.05 MB
sdma-clip-admai-2_mapped_to_genome_reads_single.bed.gz
4.56 MB
sdma-clip-admai-2_mapped_to_genome_single.bedgraph
19.73 MB
STAR
sdma-clip-admai-2_trimmed_unmapped.out.mate1.fastq.gz
34.46 MB
sdma-clip-admai-2_trimmed.bam.bai
4.39 MB
sdma-clip-admai-2_trimmed.bam
633.18 MB
sdma-clip-admai-2_trimmed_stats.txt
1.81 kB
sdma-clip-admai-2_trimmed_SJ.out.tab
795.89 kB
FASTQ file (CLIP)
sdma-clip-admai-2.fastq.gz
130.81 MB
fastqc
Directory
sdma-clip-admai-2_fastqc.zip
508.31 kB
Cutadapt (single-end)
report.txt
653 B
sdma-clip-admai-2_trimmed.fastq.gz
135.01 MB
fastqc
Directory
iCount summary
sdma-clip-admai-2_mapped_to_genome_single_summary_type.tsv
622 B
sdma-clip-admai-2_mapped_to_genome_single_summary_subtype.tsv
1017 B
sdma-clip-admai-2_mapped_to_genome_single_summary_gene.tsv
2.32 MB
Paraclu
sdma-clip-admai-2_mapped_to_genome_single_peaks.bed.gz
21.45 kB
iCount RNA-maps
sdma-clip-admai-2_mapped_to_genome_single.tar.gz
1.31 MB
PEKA
4mer analysis of sdma-clip-admai-2_mapped_to_genome.tar.gz
488.55 kB

SDMA_CLIP_ADMAi_1

iCount xlsites
sdma-clip-admai-1_mapped_to_genome_skipped.bam
3.52 kB
sdma-clip-admai-1_mapped_to_genome_single.bed.gz
6.10 MB
sdma-clip-admai-1_mapped_to_genome_singleAndMulti.bed.gz
12.03 MB
sdma-clip-admai-1_mapped_to_genome_reads_single.bed.gz
6.36 MB
sdma-clip-admai-1_mapped_to_genome_single.bedgraph
28.03 MB
STAR
sdma-clip-admai-1_trimmed_unmapped.out.mate1.fastq.gz
51.06 MB
sdma-clip-admai-1_trimmed.bam.bai
4.49 MB
sdma-clip-admai-1_trimmed.bam
905.48 MB
sdma-clip-admai-1_trimmed_stats.txt
1.81 kB
sdma-clip-admai-1_trimmed_SJ.out.tab
1.01 MB
FASTQ file (CLIP)
sdma-clip-admai-1.fastq.gz
203.97 MB
fastqc
Directory
sdma-clip-admai-1_fastqc.zip
540.30 kB
Cutadapt (single-end)
report.txt
654 B
sdma-clip-admai-1_trimmed.fastq.gz
191.98 MB
fastqc
Directory
iCount summary
sdma-clip-admai-1_mapped_to_genome_single_summary_type.tsv
618 B
sdma-clip-admai-1_mapped_to_genome_single_summary_subtype.tsv
1020 B
sdma-clip-admai-1_mapped_to_genome_single_summary_gene.tsv
2.43 MB
Paraclu
sdma-clip-admai-1_mapped_to_genome_single_peaks.bed.gz
46.63 kB
iCount RNA-maps
sdma-clip-admai-1_mapped_to_genome_single.tar.gz
1.87 MB
PEKA
4mer analysis of sdma-clip-admai-1_mapped_to_genome.tar.gz
526.47 kB

SDMA_CLIP_DMSO_3

iCount RNA-maps
sdma-clip-dmso-3_mapped_to_genome_single.tar.gz
2.14 MB
iCount xlsites
sdma-clip-dmso-3_mapped_to_genome_skipped.bam
3.24 kB
sdma-clip-dmso-3_mapped_to_genome_single.bed.gz
7.73 MB
sdma-clip-dmso-3_mapped_to_genome_singleAndMulti.bed.gz
13.81 MB
sdma-clip-dmso-3_mapped_to_genome_reads_single.bed.gz
8.04 MB
sdma-clip-dmso-3_mapped_to_genome_single.bedgraph
36.02 MB
STAR
sdma-clip-dmso-3_trimmed_unmapped.out.mate1.fastq.gz
71.32 MB
sdma-clip-dmso-3_trimmed.bam.bai
4.50 MB
sdma-clip-dmso-3_trimmed.bam
1.04 GB
sdma-clip-dmso-3_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-3_trimmed_SJ.out.tab
1.26 MB
FASTQ file (CLIP)
sdma-clip-dmso-3.fastq.gz
237.94 MB
fastqc
Directory
sdma-clip-dmso-3_fastqc.zip
506.09 kB
Cutadapt (single-end)
report.txt
652 B
sdma-clip-dmso-3_trimmed.fastq.gz
242.81 MB
fastqc
Directory
iCount summary
sdma-clip-dmso-3_mapped_to_genome_single_summary_type.tsv
627 B
sdma-clip-dmso-3_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
sdma-clip-dmso-3_mapped_to_genome_single_summary_gene.tsv
2.44 MB
Paraclu
sdma-clip-dmso-3_mapped_to_genome_single_peaks.bed.gz
87.16 kB
PEKA
4mer analysis of sdma-clip-dmso-3_mapped_to_genome.tar.gz
546.42 kB

SDMA_CLIP_DMSO_1

iCount xlsites
sdma-clip-dmso-1_mapped_to_genome_skipped.bam
3.53 kB
sdma-clip-dmso-1_mapped_to_genome_single.bed.gz
5.68 MB
sdma-clip-dmso-1_mapped_to_genome_singleAndMulti.bed.gz
9.00 MB
sdma-clip-dmso-1_mapped_to_genome_reads_single.bed.gz
5.89 MB
sdma-clip-dmso-1_mapped_to_genome_single.bedgraph
26.41 MB
PEKA
4mer analysis of sdma-clip-dmso-1_mapped_to_genome.tar.gz
505.67 kB
iCount summary
sdma-clip-dmso-1_mapped_to_genome_single_summary_type.tsv
621 B
sdma-clip-dmso-1_mapped_to_genome_single_summary_subtype.tsv
1019 B
sdma-clip-dmso-1_mapped_to_genome_single_summary_gene.tsv
2.28 MB
Paraclu
sdma-clip-dmso-1_mapped_to_genome_single_peaks.bed.gz
45.31 kB
iCount RNA-maps
sdma-clip-dmso-1_mapped_to_genome_single.tar.gz
1.94 MB
STAR
sdma-clip-dmso-1_trimmed_unmapped.out.mate1.fastq.gz
39.56 MB
sdma-clip-dmso-1_trimmed.bam.bai
4.24 MB
sdma-clip-dmso-1_trimmed.bam
900.43 MB
sdma-clip-dmso-1_trimmed_stats.txt
1.81 kB
sdma-clip-dmso-1_trimmed_SJ.out.tab
998.48 kB
Cutadapt (single-end)
report.txt
652 B
sdma-clip-dmso-1_trimmed.fastq.gz
173.96 MB
fastqc
Directory
FASTQ file (CLIP)
sdma-clip-dmso-1.fastq.gz
167.44 MB
fastqc
Directory
sdma-clip-dmso-1_fastqc.zip
521.72 kB

SDMA_CLIP_DMSO_grouped

iCount group
SDMA_CLIP_DMSO_grouped_grouped_cdna.bed.gz
17.52 MB
SDMA_CLIP_DMSO_grouped_grouped_reads.bed.gz
18.14 MB
SDMA_CLIP_DMSO_grouped_grouped_cdna.bedgraph
82.80 MB
iCount summary
SDMA_CLIP_DMSO_grouped_grouped_cdna_summary_type.tsv
444 B
SDMA_CLIP_DMSO_grouped_grouped_cdna_summary_subtype.tsv
1.00 kB
SDMA_CLIP_DMSO_grouped_grouped_cdna_summary_gene.tsv
2.93 MB
Paraclu
SDMA_CLIP_DMSO_grouped_grouped_cdna_peaks.bed.gz
252.48 kB
iCount RNA-maps
SDMA_CLIP_DMSO_grouped_grouped_cdna.tar.gz
3.21 MB
iCount annotate
SDMA_CLIP_DMSO_grouped_grouped_cdna_annotated.bed.gz
22.59 MB
SDMA_CLIP_DMSO_grouped_grouped_cdna_annotated.bedgraph
82.80 MB
PEKA
4mer analysis of SDMA_CLIP_DMSO_grouped_grouped_cdna.tar.gz
635.19 kB

SmB_CLIP_DMSO_grouped

iCount group
SmB_CLIP_DMSO_grouped_grouped_cdna.bed.gz
38.15 MB
SmB_CLIP_DMSO_grouped_grouped_reads.bed.gz
39.29 MB
SmB_CLIP_DMSO_grouped_grouped_cdna.bedgraph
182.97 MB
iCount summary
SmB_CLIP_DMSO_grouped_grouped_cdna_summary_type.tsv
449 B
SmB_CLIP_DMSO_grouped_grouped_cdna_summary_subtype.tsv
1.02 kB
SmB_CLIP_DMSO_grouped_grouped_cdna_summary_gene.tsv
3.09 MB
Paraclu
SmB_CLIP_DMSO_grouped_grouped_cdna_peaks.bed.gz
481.64 kB
iCount RNA-maps
SmB_CLIP_DMSO_grouped_grouped_cdna.tar.gz
4.34 MB
iCount annotate
SmB_CLIP_DMSO_grouped_grouped_cdna_annotated.bed.gz
47.35 MB
SmB_CLIP_DMSO_grouped_grouped_cdna_annotated.bedgraph
182.97 MB
PEKA
4mer analysis of SmB_CLIP_DMSO_grouped_grouped_cdna.tar.gz
723.83 kB

SDMA_CLIP_ADMAi_grouped

iCount group
SDMA_CLIP_ADMAi_grouped_grouped_cdna.bed.gz
15.59 MB
SDMA_CLIP_ADMAi_grouped_grouped_reads.bed.gz
16.22 MB
SDMA_CLIP_ADMAi_grouped_grouped_cdna.bedgraph
73.29 MB
iCount summary
SDMA_CLIP_ADMAi_grouped_grouped_cdna_summary_type.tsv
445 B
SDMA_CLIP_ADMAi_grouped_grouped_cdna_summary_subtype.tsv
1.01 kB
SDMA_CLIP_ADMAi_grouped_grouped_cdna_summary_gene.tsv
2.90 MB
iCount RNA-maps
SDMA_CLIP_ADMAi_grouped_grouped_cdna.tar.gz
2.77 MB
Paraclu
SDMA_CLIP_ADMAi_grouped_grouped_cdna_peaks.bed.gz
182.80 kB
iCount annotate
SDMA_CLIP_ADMAi_grouped_grouped_cdna_annotated.bed.gz
20.06 MB
SDMA_CLIP_ADMAi_grouped_grouped_cdna_annotated.bedgraph
73.29 MB
PEKA
4mer analysis of SDMA_CLIP_ADMAi_grouped_grouped_cdna.tar.gz
634.00 kB

PM21165_fastq

FASTQ file (single-end)
GRI4153A1-A39_S1_L001_R1_001.fastq.gz
21.95 GB
fastqc
Directory
stderr.txt
1.21 kB
GRI4153A1-A39_S1_L001_R1_001_fastqc.zip
524.25 kB

SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped

iCount annotate
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_annotated.bed.gz
43.34 MB
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_annotated.bedgraph
168.01 MB
iCount summary
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_summary_type.tsv
446 B
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_summary_subtype.tsv
1.02 kB
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_summary_gene.tsv
3.16 MB
iCount group
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna.bed.gz
35.49 MB
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_reads.bed.gz
37.85 MB
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna.bedgraph
168.01 MB
Paraclu
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna_peaks.bed.gz
272.58 kB
iCount RNA-maps
SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna.tar.gz
2.72 MB
PEKA
4mer analysis of SDMA_iCLIP_DMSO_mock_inputs_96hrs_grouped_grouped_cdna.tar.gz
719.50 kB