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Folder iconNOVA1 and lncRNA binding

Rahul Arora
April 7, 2020

No Sample

FASTQ file (single-end)
fastqc
Directory
nova1-brain-e18-20100320-lujn01.fastq.gz
11.34 MB
stderr.txt
1.38 kB
nova1-brain-e18-20100320-lujn01_fastqc.zip
426.89 kB
Upload iCount sample annotation
NOVA1_lncRNA_annotation_sheet_1.xlsx
15.19 kB
NOVA1_lncRNA_annotation_sheet_1.tab.gz
869 B
Upload iCount sample annotation
NOVA1_lncRNA_annotation_sheet_1.xlsx
15.19 kB
NOVA1_lncRNA_annotation_sheet_1.tab.gz
869 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.13 kB
NOVA1_and_lncRNA_binding.fastq.gz
190.86 MB
NOVA1_and_lncRNA_binding_fastqc.zip
593.80 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
384 B
FASTQ file (single-end)
nova1-brain-e18-20100320-lujn01-1.fastq.gz
10.38 MB
fastqc
Directory
nova1-brain-e18-20100320-lujn01-1_fastqc.zip
507.15 kB
stderr.txt
1.42 kB
FASTQ file (single-end)
fastqc
Directory
nova1-brain-e18-20100320-lujn01-2.fastq.gz
43.39 MB
stderr.txt
1.42 kB
nova1-brain-e18-20100320-lujn01-2_fastqc.zip
421.90 kB
iCount RNA-maps
nova1-brain-e18-20100320-lujn01-2_trimmed_single.tar.gz
500.84 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch_fastqc.zip
684.56 kB
demux_nomatch.fastq.gz
29.57 MB
stderr.txt
983 B
FASTQ file (single-end)
fastqc
Directory
nova1-brain-e18-20100320-lujn01-3.fastq.gz
36.49 MB
stderr.txt
1.42 kB
nova1-brain-e18-20100320-lujn01-3_fastqc.zip
567.06 kB
iCount RNA-maps
nova1-brain-e18-20100320-lujn01-3_trimmed_single.tar.gz
378.48 kB
Paraclu
nova1-brain-e18-20100320-lujn01-3_trimmed_single_peaks.bed.gz
1.44 kB
Paraclu
nova1-brain-e18-20100320-lujn01-1_trimmed_single_peaks.bed.gz
413 B
Cutadapt (single-end)
report.txt
669 B
fastqc
Directory
nova1-brain-e18-20100320-lujn01-2_trimmed.fastq.gz
41.21 MB
Cutadapt (single-end)
fastqc
Directory
nova1-brain-e18-20100320-lujn01-3_trimmed.fastq.gz
21.93 MB
report.txt
669 B
Paraclu
nova1-brain-e18-20100320-lujn01_trimmed_single_peaks.bed.gz
482 B
iCount RNA-maps
nova1-brain-e18-20100320-lujn01_trimmed_single.tar.gz
416.03 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
nova1-brain-e18-20100320-lujn01-1_trimmed.fastq.gz
9.76 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
nova1-brain-e18-20100320-lujn01_trimmed.fastq.gz
10.52 MB
STAR
nova1-brain-e18-20100320-lujn01-2_trimmed.bam
43.24 MB
nova1-brain-e18-20100320-lujn01-2_trimmed_SJ.out.tab
43.81 kB
nova1-brain-e18-20100320-lujn01-2_trimmed.bam.bai
2.56 MB
nova1-brain-e18-20100320-lujn01-2_trimmed_stats.txt
1.80 kB
nova1-brain-e18-20100320-lujn01-2_trimmed_unmapped.out.mate1.fastq.gz
11.71 MB
nova1-brain-e18-20100320-lujn01-2_trimmed.bw
8.00 kB
STAR
nova1-brain-e18-20100320-lujn01-3_trimmed.bam
30.87 MB
nova1-brain-e18-20100320-lujn01-3_trimmed_SJ.out.tab
15.69 kB
nova1-brain-e18-20100320-lujn01-3_trimmed.bam.bai
1.92 MB
nova1-brain-e18-20100320-lujn01-3_trimmed.bw
5.13 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_unmapped.out.mate1.fastq.gz
15.02 MB
nova1-brain-e18-20100320-lujn01-3_trimmed_stats.txt
1.80 kB
STAR
nova1-brain-e18-20100320-lujn01-1_trimmed_unmapped.out.mate1.fastq.gz
4.69 MB
nova1-brain-e18-20100320-lujn01-1_trimmed_SJ.out.tab
8.69 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_stats.txt
1.79 kB
nova1-brain-e18-20100320-lujn01-1_trimmed.bam.bai
1.73 MB
nova1-brain-e18-20100320-lujn01-1_trimmed.bam
10.97 MB
nova1-brain-e18-20100320-lujn01-1_trimmed.bw
4.96 kB
iCount xlsites
nova1-brain-e18-20100320-lujn01-1_trimmed_single.bed.gz
141.46 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_skipped.bam
1.38 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_single.bedgraph
553.72 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_singleAndMulti.bed.gz
242.62 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_reads_single.bed.gz
165.44 kB
iCount summary
nova1-brain-e18-20100320-lujn01-1_trimmed_single_summary_type.tsv
419 B
nova1-brain-e18-20100320-lujn01-1_trimmed_single_summary_gene.tsv
403.95 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_single_summary_subtype.tsv
980 B
STAR
nova1-brain-e18-20100320-lujn01_trimmed_unmapped.out.mate1.fastq.gz
3.09 MB
nova1-brain-e18-20100320-lujn01_trimmed.bam.bai
1.88 MB
nova1-brain-e18-20100320-lujn01_trimmed.bam
11.69 MB
nova1-brain-e18-20100320-lujn01_trimmed_stats.txt
1.79 kB
nova1-brain-e18-20100320-lujn01_trimmed.bw
5.16 kB
nova1-brain-e18-20100320-lujn01_trimmed_SJ.out.tab
13.67 kB
iCount xlsites
nova1-brain-e18-20100320-lujn01-3_trimmed_single.bed.gz
149.22 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_single.bedgraph
572.17 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_skipped.bam
1.38 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_reads_single.bed.gz
170.98 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_singleAndMulti.bed.gz
348.56 kB
iCount xlsites
nova1-brain-e18-20100320-lujn01-2_trimmed_skipped.bam
2.03 kB
nova1-brain-e18-20100320-lujn01-2_trimmed_single.bed.gz
731.43 kB
nova1-brain-e18-20100320-lujn01-2_trimmed_singleAndMulti.bed.gz
1.09 MB
nova1-brain-e18-20100320-lujn01-2_trimmed_single.bedgraph
3.07 MB
nova1-brain-e18-20100320-lujn01-2_trimmed_reads_single.bed.gz
868.35 kB
iCount summary
nova1-brain-e18-20100320-lujn01-3_trimmed_single_summary_type.tsv
420 B
nova1-brain-e18-20100320-lujn01-3_trimmed_single_summary_gene.tsv
403.23 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_single_summary_subtype.tsv
981 B
iCount xlsites
nova1-brain-e18-20100320-lujn01_trimmed_skipped.bam
1.38 kB
nova1-brain-e18-20100320-lujn01_trimmed_single.bed.gz
205.30 kB
nova1-brain-e18-20100320-lujn01_trimmed_reads_single.bed.gz
241.03 kB
nova1-brain-e18-20100320-lujn01_trimmed_singleAndMulti.bed.gz
344.88 kB
nova1-brain-e18-20100320-lujn01_trimmed_single.bedgraph
824.36 kB
PEKA
nova1-brain-e18-20100320-lujn01-1.tar.gz
60.46 kB
nova1-brain-e18-20100320-lujn01-1
Directory
iCount summary
nova1-brain-e18-20100320-lujn01-2_trimmed_single_summary_gene.tsv
804.95 kB
nova1-brain-e18-20100320-lujn01-2_trimmed_single_summary_subtype.tsv
1002 B
nova1-brain-e18-20100320-lujn01-2_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
nova1-brain-e18-20100320-lujn01-1_trimmed_single.tar.gz
400.33 kB
Paraclu
nova1-brain-e18-20100320-lujn01-2_trimmed_single_peaks.bed.gz
2.94 kB
iCount summary
nova1-brain-e18-20100320-lujn01_trimmed_single_summary_subtype.tsv
978 B
nova1-brain-e18-20100320-lujn01_trimmed_single_summary_type.tsv
422 B
nova1-brain-e18-20100320-lujn01_trimmed_single_summary_gene.tsv
484.57 kB
PEKA
nova1-brain-e18-20100320-lujn01-3.tar.gz
129.95 kB
nova1-brain-e18-20100320-lujn01-3
Directory
PEKA
nova1-brain-e18-20100320-lujn01
Directory
nova1-brain-e18-20100320-lujn01.tar.gz
191.98 kB
PEKA
nova1-brain-e18-20100320-lujn01-2
Directory
nova1-brain-e18-20100320-lujn01-2.tar.gz
237.38 kB

NOVA1_brain:E18_20100320_LUjn01

FASTQ file (single-end)
fastqc
Directory
nova1-brain-e18-20100320-lujn01.fastq.gz
11.34 MB
stderr.txt
1.38 kB
nova1-brain-e18-20100320-lujn01_fastqc.zip
426.89 kB
Paraclu
nova1-brain-e18-20100320-lujn01_trimmed_single_peaks.bed.gz
482 B
iCount RNA-maps
nova1-brain-e18-20100320-lujn01_trimmed_single.tar.gz
416.03 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
nova1-brain-e18-20100320-lujn01_trimmed.fastq.gz
10.52 MB
STAR
nova1-brain-e18-20100320-lujn01_trimmed_unmapped.out.mate1.fastq.gz
3.09 MB
nova1-brain-e18-20100320-lujn01_trimmed.bam.bai
1.88 MB
nova1-brain-e18-20100320-lujn01_trimmed.bam
11.69 MB
nova1-brain-e18-20100320-lujn01_trimmed_stats.txt
1.79 kB
nova1-brain-e18-20100320-lujn01_trimmed.bw
5.16 kB
nova1-brain-e18-20100320-lujn01_trimmed_SJ.out.tab
13.67 kB
iCount xlsites
nova1-brain-e18-20100320-lujn01_trimmed_skipped.bam
1.38 kB
nova1-brain-e18-20100320-lujn01_trimmed_single.bed.gz
205.30 kB
nova1-brain-e18-20100320-lujn01_trimmed_reads_single.bed.gz
241.03 kB
nova1-brain-e18-20100320-lujn01_trimmed_singleAndMulti.bed.gz
344.88 kB
nova1-brain-e18-20100320-lujn01_trimmed_single.bedgraph
824.36 kB
iCount summary
nova1-brain-e18-20100320-lujn01_trimmed_single_summary_subtype.tsv
978 B
nova1-brain-e18-20100320-lujn01_trimmed_single_summary_type.tsv
422 B
nova1-brain-e18-20100320-lujn01_trimmed_single_summary_gene.tsv
484.57 kB
PEKA
nova1-brain-e18-20100320-lujn01
Directory
nova1-brain-e18-20100320-lujn01.tar.gz
191.98 kB

NOVA1_and_lncRNA_binding.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.13 kB
NOVA1_and_lncRNA_binding.fastq.gz
190.86 MB
NOVA1_and_lncRNA_binding_fastqc.zip
593.80 kB

NOVA1_brain:E18_20100320_LUjn01_1

FASTQ file (single-end)
nova1-brain-e18-20100320-lujn01-1.fastq.gz
10.38 MB
fastqc
Directory
nova1-brain-e18-20100320-lujn01-1_fastqc.zip
507.15 kB
stderr.txt
1.42 kB
Paraclu
nova1-brain-e18-20100320-lujn01-1_trimmed_single_peaks.bed.gz
413 B
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
nova1-brain-e18-20100320-lujn01-1_trimmed.fastq.gz
9.76 MB
STAR
nova1-brain-e18-20100320-lujn01-1_trimmed_unmapped.out.mate1.fastq.gz
4.69 MB
nova1-brain-e18-20100320-lujn01-1_trimmed_SJ.out.tab
8.69 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_stats.txt
1.79 kB
nova1-brain-e18-20100320-lujn01-1_trimmed.bam.bai
1.73 MB
nova1-brain-e18-20100320-lujn01-1_trimmed.bam
10.97 MB
nova1-brain-e18-20100320-lujn01-1_trimmed.bw
4.96 kB
iCount xlsites
nova1-brain-e18-20100320-lujn01-1_trimmed_single.bed.gz
141.46 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_skipped.bam
1.38 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_single.bedgraph
553.72 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_singleAndMulti.bed.gz
242.62 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_reads_single.bed.gz
165.44 kB
iCount summary
nova1-brain-e18-20100320-lujn01-1_trimmed_single_summary_type.tsv
419 B
nova1-brain-e18-20100320-lujn01-1_trimmed_single_summary_gene.tsv
403.95 kB
nova1-brain-e18-20100320-lujn01-1_trimmed_single_summary_subtype.tsv
980 B
PEKA
nova1-brain-e18-20100320-lujn01-1.tar.gz
60.46 kB
nova1-brain-e18-20100320-lujn01-1
Directory
iCount RNA-maps
nova1-brain-e18-20100320-lujn01-1_trimmed_single.tar.gz
400.33 kB

NOVA1_brain:E18_20100320_LUjn01_2

FASTQ file (single-end)
fastqc
Directory
nova1-brain-e18-20100320-lujn01-2.fastq.gz
43.39 MB
stderr.txt
1.42 kB
nova1-brain-e18-20100320-lujn01-2_fastqc.zip
421.90 kB
iCount RNA-maps
nova1-brain-e18-20100320-lujn01-2_trimmed_single.tar.gz
500.84 kB
Cutadapt (single-end)
report.txt
669 B
fastqc
Directory
nova1-brain-e18-20100320-lujn01-2_trimmed.fastq.gz
41.21 MB
STAR
nova1-brain-e18-20100320-lujn01-2_trimmed.bam
43.24 MB
nova1-brain-e18-20100320-lujn01-2_trimmed_SJ.out.tab
43.81 kB
nova1-brain-e18-20100320-lujn01-2_trimmed.bam.bai
2.56 MB
nova1-brain-e18-20100320-lujn01-2_trimmed_stats.txt
1.80 kB
nova1-brain-e18-20100320-lujn01-2_trimmed_unmapped.out.mate1.fastq.gz
11.71 MB
nova1-brain-e18-20100320-lujn01-2_trimmed.bw
8.00 kB
iCount xlsites
nova1-brain-e18-20100320-lujn01-2_trimmed_skipped.bam
2.03 kB
nova1-brain-e18-20100320-lujn01-2_trimmed_single.bed.gz
731.43 kB
nova1-brain-e18-20100320-lujn01-2_trimmed_singleAndMulti.bed.gz
1.09 MB
nova1-brain-e18-20100320-lujn01-2_trimmed_single.bedgraph
3.07 MB
nova1-brain-e18-20100320-lujn01-2_trimmed_reads_single.bed.gz
868.35 kB
iCount summary
nova1-brain-e18-20100320-lujn01-2_trimmed_single_summary_gene.tsv
804.95 kB
nova1-brain-e18-20100320-lujn01-2_trimmed_single_summary_subtype.tsv
1002 B
nova1-brain-e18-20100320-lujn01-2_trimmed_single_summary_type.tsv
429 B
Paraclu
nova1-brain-e18-20100320-lujn01-2_trimmed_single_peaks.bed.gz
2.94 kB
PEKA
nova1-brain-e18-20100320-lujn01-2
Directory
nova1-brain-e18-20100320-lujn01-2.tar.gz
237.38 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch_fastqc.zip
684.56 kB
demux_nomatch.fastq.gz
29.57 MB
stderr.txt
983 B

NOVA1_brain:E18_20100320_LUjn01_3

FASTQ file (single-end)
fastqc
Directory
nova1-brain-e18-20100320-lujn01-3.fastq.gz
36.49 MB
stderr.txt
1.42 kB
nova1-brain-e18-20100320-lujn01-3_fastqc.zip
567.06 kB
iCount RNA-maps
nova1-brain-e18-20100320-lujn01-3_trimmed_single.tar.gz
378.48 kB
Paraclu
nova1-brain-e18-20100320-lujn01-3_trimmed_single_peaks.bed.gz
1.44 kB
Cutadapt (single-end)
fastqc
Directory
nova1-brain-e18-20100320-lujn01-3_trimmed.fastq.gz
21.93 MB
report.txt
669 B
STAR
nova1-brain-e18-20100320-lujn01-3_trimmed.bam
30.87 MB
nova1-brain-e18-20100320-lujn01-3_trimmed_SJ.out.tab
15.69 kB
nova1-brain-e18-20100320-lujn01-3_trimmed.bam.bai
1.92 MB
nova1-brain-e18-20100320-lujn01-3_trimmed.bw
5.13 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_unmapped.out.mate1.fastq.gz
15.02 MB
nova1-brain-e18-20100320-lujn01-3_trimmed_stats.txt
1.80 kB
iCount xlsites
nova1-brain-e18-20100320-lujn01-3_trimmed_single.bed.gz
149.22 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_single.bedgraph
572.17 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_skipped.bam
1.38 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_reads_single.bed.gz
170.98 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_singleAndMulti.bed.gz
348.56 kB
iCount summary
nova1-brain-e18-20100320-lujn01-3_trimmed_single_summary_type.tsv
420 B
nova1-brain-e18-20100320-lujn01-3_trimmed_single_summary_gene.tsv
403.23 kB
nova1-brain-e18-20100320-lujn01-3_trimmed_single_summary_subtype.tsv
981 B
PEKA
nova1-brain-e18-20100320-lujn01-3.tar.gz
129.95 kB
nova1-brain-e18-20100320-lujn01-3
Directory