PEKA
IgG_grouped_cdna.tar.gz
472.96 kB
IgG_grouped_cdna
Directory
Cutadapt (single-end)
ctrl-noab-dohh2-20160920_trimmed.fastq.gz
91.14 MB
iCount xlsites
ddx3x-u2932-20170116-2_trimmed_single.bed.gz
305.38 kB
ddx3x-u2932-20170116-2_trimmed_reads_single.bed.gz
371.13 kB
ddx3x-u2932-20170116-2_trimmed_single.bedgraph
1.15 MB
iCount xlsites
ddx3x-mutu-20170115-6_trimmed_skipped.bam
2.90 kB
ddx3x-mutu-20170115-6_trimmed_singleAndMulti.bed.gz
42.27 kB
ddx3x-mutu-20170115-6_trimmed_reads_single.bed.gz
7.38 kB
ddx3x-mutu-20170115-6_trimmed_single.bedgraph
21.29 kB
ddx3x-mutu-20170115-6_trimmed_single.bed.gz
6.90 kB
PEKA
ddx3x-u2932-20160920
Directory
ddx3x-u2932-20160920.tar.gz
285.42 kB
iCount xlsites
ddx3x-bjab-20170116-5_trimmed_skipped.bam
3.04 kB
ddx3x-bjab-20170116-5_trimmed_single.bed.gz
1.23 MB
ddx3x-bjab-20170116-5_trimmed_singleAndMulti.bed.gz
4.21 MB
ddx3x-bjab-20170116-5_trimmed_reads_single.bed.gz
1.52 MB
ddx3x-bjab-20170116-5_trimmed_single.bedgraph
5.32 MB
iCount xlsites
ddx3x-mutu-20170115-1_trimmed_skipped.bam
2.90 kB
ddx3x-mutu-20170115-1_trimmed_singleAndMulti.bed.gz
124.79 kB
ddx3x-mutu-20170115-1_trimmed_single.bed.gz
24.78 kB
ddx3x-mutu-20170115-1_trimmed_reads_single.bed.gz
25.83 kB
ddx3x-mutu-20170115-1_trimmed_single.bedgraph
84.94 kB
PEKA
ddx3x-raji-20170117-3
Directory
ddx3x-raji-20170117-3.tar.gz
199.32 kB
iCount xlsites
ddx3x-mutu-20170116-1_trimmed_single.bed.gz
518.13 kB
ddx3x-mutu-20170116-1_trimmed_skipped.bam
3.08 kB
ddx3x-mutu-20170116-1_trimmed_single.bedgraph
2.00 MB
ddx3x-mutu-20170116-1_trimmed_reads_single.bed.gz
636.71 kB
ddx3x-mutu-20170116-1_trimmed_singleAndMulti.bed.gz
1.86 MB
iCount xlsites
ddx3x-raji-20170116-3_trimmed_single.bed.gz
272.18 kB
ddx3x-raji-20170116-3_trimmed_skipped.bam
2.90 kB
ddx3x-raji-20170116-3_trimmed_reads_single.bed.gz
314.42 kB
ddx3x-raji-20170116-3_trimmed_singleAndMulti.bed.gz
1.12 MB
ddx3x-raji-20170116-3_trimmed_single.bedgraph
968.36 kB
iCount summary
ddx3x-mutu-20170116-6_trimmed_single_summary_subtype.tsv
979 B
ddx3x-mutu-20170116-6_trimmed_single_summary_gene.tsv
338.11 kB
ddx3x-mutu-20170116-6_trimmed_single_summary_type.tsv
422 B
iCount RNA-maps
ddx3x-mutu-20170116-6_trimmed_single.tar.gz
410.64 kB
iCount xlsites
ddx3x-u2932-20170115-2_trimmed_skipped.bam
3.07 kB
ddx3x-u2932-20170115-2_trimmed_reads_single.bed.gz
216.45 kB
ddx3x-u2932-20170115-2_trimmed_single.bedgraph
718.76 kB
ddx3x-u2932-20170115-2_trimmed_single.bed.gz
198.85 kB
ddx3x-u2932-20170115-2_trimmed_singleAndMulti.bed.gz
834.44 kB
iCount summary
ddx3x-dohh2-20170116-4_trimmed_single_summary_type.tsv
437 B
ddx3x-dohh2-20170116-4_trimmed_single_summary_subtype.tsv
1007 B
ddx3x-dohh2-20170116-4_trimmed_single_summary_gene.tsv
666.26 kB
iCount xlsites
ddx3x-dohh2-20170115-4_trimmed_singleAndMulti.bed.gz
1.62 MB
ddx3x-dohh2-20170115-4_trimmed_skipped.bam
3.27 kB
ddx3x-dohh2-20170115-4_trimmed_single.bed.gz
412.70 kB
ddx3x-dohh2-20170115-4_trimmed_reads_single.bed.gz
463.71 kB
ddx3x-dohh2-20170115-4_trimmed_single.bedgraph
1.51 MB
iCount summary
ddx3x-u2932-20170116-2_trimmed_single_summary_subtype.tsv
1004 B
ddx3x-u2932-20170116-2_trimmed_single_summary_type.tsv
434 B
ddx3x-u2932-20170116-2_trimmed_single_summary_gene.tsv
795.49 kB
iCount summary
ddx3x-mutu-20170115-6_trimmed_single_summary_type.tsv
410 B
ddx3x-mutu-20170115-6_trimmed_single_summary_subtype.tsv
772 B
ddx3x-mutu-20170115-6_trimmed_single_summary_gene.tsv
38.97 kB
Paraclu
ddx3x-mutu-20170115-6_trimmed_single_peaks.bed.gz
98 B
iCount RNA-maps
ddx3x-bjab-20170116-5_trimmed_single.tar.gz
935.21 kB
iCount RNA-maps
ddx3x-mutu-20170115-1_trimmed_single.tar.gz
355.20 kB
Paraclu
ddx3x-mutu-20170116-1_trimmed_single_peaks.bed.gz
4.95 kB
iCount summary
ddx3x-raji-20170116-3_trimmed_single_summary_gene.tsv
756.39 kB
ddx3x-raji-20170116-3_trimmed_single_summary_subtype.tsv
1015 B
ddx3x-raji-20170116-3_trimmed_single_summary_type.tsv
443 B
Paraclu
ddx3x-raji-20170116-3_trimmed_single_peaks.bed.gz
5.65 kB
iCount summary
ddx3x-dohh2-20170115-4_trimmed_single_summary_subtype.tsv
1017 B
ddx3x-dohh2-20170115-4_trimmed_single_summary_type.tsv
441 B
ddx3x-dohh2-20170115-4_trimmed_single_summary_gene.tsv
972.19 kB
iCount RNA-maps
ddx3x-dohh2-20170115-4_trimmed_single.tar.gz
587.14 kB
iCount summary
ddx3x-mutu-20170116-1_trimmed_single_summary_subtype.tsv
1012 B
ddx3x-mutu-20170116-1_trimmed_single_summary_gene.tsv
959.17 kB
ddx3x-mutu-20170116-1_trimmed_single_summary_type.tsv
435 B
iCount summary
ddx3x-u2932-20170115-2_trimmed_single_summary_subtype.tsv
1015 B
ddx3x-u2932-20170115-2_trimmed_single_summary_type.tsv
438 B
ddx3x-u2932-20170115-2_trimmed_single_summary_gene.tsv
629.56 kB
PEKA
ddx3x-dohh2-20170116-4
Directory
ddx3x-dohh2-20170116-4.tar.gz
304.13 kB
PEKA
ddx3x-u2932-20170116-2
Directory
ddx3x-u2932-20170116-2.tar.gz
313.67 kB
PEKA
ddx3x-bjab-20170116-5
Directory
ddx3x-bjab-20170116-5.tar.gz
383.22 kB
PEKA
ddx3x-mutu-20170116-1.tar.gz
329.46 kB
ddx3x-mutu-20170116-1
Directory
PEKA
ddx3x-raji-20170116-3
Directory
ddx3x-raji-20170116-3.tar.gz
311.93 kB
PEKA
ddx3x-u2932-20170115-2
Directory
ddx3x-u2932-20170115-2.tar.gz
285.25 kB
PEKA
ddx3x-dohh2-20170115-4
Directory
ddx3x-dohh2-20170115-4.tar.gz
323.78 kB
iCount xlsites
ddx3x-bjab-20160920-5_trimmed_singleAndMulti.bed.gz
4.04 MB
ddx3x-bjab-20160920-5_trimmed_single.bed.gz
1.11 MB
ddx3x-bjab-20160920-5_trimmed_skipped.bam
4.09 kB
ddx3x-bjab-20160920-5_trimmed_single.bedgraph
4.46 MB
ddx3x-bjab-20160920-5_trimmed_reads_single.bed.gz
1.35 MB
iCount RNA-maps
ddx3x-bjab-20160920-5_trimmed_single.tar.gz
817.76 kB
iCount xlsites
ddx3x-raji-20170115-3_trimmed_skipped.bam
3.17 kB
ddx3x-raji-20170115-3_trimmed_single.bedgraph
1.35 MB
ddx3x-raji-20170115-3_trimmed_singleAndMulti.bed.gz
1.78 MB
ddx3x-raji-20170115-3_trimmed_single.bed.gz
373.93 kB
ddx3x-raji-20170115-3_trimmed_reads_single.bed.gz
407.30 kB
PEKA
ddx3x-raji-20170115-3
Directory
ddx3x-raji-20170115-3.tar.gz
302.89 kB
Upload iCount sample annotation
name_annotation_sheet_20170117.xlsx
222.16 kB
name_annotation_sheet_20170117.tab.gz
620 B
FASTQ file (single-end)
SLX-12466.INLINE.HH7JHBBXX.s_4.r_1_20170117.fastq.gz
7.65 GB
SLX-12466.INLINE.HH7JHBBXX.s_4.r_1_20170117_fastqc.zip
548.73 kB
FASTQ file (single-end)
SLX-13198.INLINE.HJJT2BBXX.s_1.r_1_20170619_Hodson.fastq.gz
2.86 GB
SLX-13198.INLINE.HJJT2BBXX.s_1.r_1_20170619_Hodson_fastqc.zip
529.91 kB
Upload iCount sample annotation
name_annotation_sheet_20170619.tab.gz
586 B
name_annotation_sheet_20170619.xlsx
221.99 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
396 B
Upload iCount sample annotation
name_annotation_sheet_20170427.xlsx
221.81 kB
name_annotation_sheet_20170427.tab.gz
562 B
FASTQ file (single-end)
SLX-13200.INLINE.HJ777BBXX.s_2.r_1_20170427.fastq.gz
4.69 GB
SLX-13200.INLINE.HJ777BBXX.s_2.r_1_20170427_fastqc.zip
545.61 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
309 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
348 B
FASTQ file (single-end)
ddx3x-mutu-20170619-1.fastq.gz
18.12 MB
ddx3x-mutu-20170619-1_fastqc.zip
607.64 kB
FASTQ file (single-end)
ddx3x-mutu-20170619-2_fastqc.zip
446.10 kB
ddx3x-mutu-20170619-2.fastq.gz
425.93 MB
FASTQ file (single-end)
ddx3x-mutu-20170619-3.fastq.gz
277.02 MB
ddx3x-mutu-20170619-3_fastqc.zip
462.45 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
991.88 MB
demux_nomatch_fastqc.zip
509.67 kB
FASTQ file (single-end)
ddx3x-dohh2-20170619-4.fastq.gz
437.36 MB
ddx3x-dohh2-20170619-4_fastqc.zip
418.99 kB
iCount RNA-maps
ddx3x-mutu-20170619-3_trimmed_single.tar.gz
575.39 kB
Paraclu
ddx3x-mutu-20170619-2_trimmed_single_peaks.bed.gz
11.12 kB
Cutadapt (single-end)
ddx3x-mutu-20170619-2_trimmed.fastq.gz
362.44 MB
PEKA
ddx3x-mutu-20170619-1.tar.gz
128 B
Cutadapt (single-end)
ddx3x-dohh2-20170619-4_trimmed.fastq.gz
367.77 MB
Cutadapt (single-end)
ddx3x-mutu-20170619-3_trimmed.fastq.gz
249.49 MB
Cutadapt (single-end)
ddx3x-mutu-20170619-1_trimmed.fastq.gz
8.34 MB
STAR
ddx3x-dohh2-20170619-4_trimmed.bam
680.46 MB
ddx3x-dohh2-20170619-4_trimmed.bam.bai
3.76 MB
ddx3x-dohh2-20170619-4_trimmed_SJ.out.tab
133.26 kB
ddx3x-dohh2-20170619-4_trimmed_stats.txt
1.81 kB
ddx3x-dohh2-20170619-4_trimmed_unmapped.out.mate1.fastq.gz
100.49 MB
STAR
ddx3x-mutu-20170619-3_trimmed.bam.bai
4.27 MB
ddx3x-mutu-20170619-3_trimmed_unmapped.out.mate1.fastq.gz
56.50 MB
ddx3x-mutu-20170619-3_trimmed.bam
524.89 MB
ddx3x-mutu-20170619-3_trimmed_stats.txt
1.81 kB
ddx3x-mutu-20170619-3_trimmed_SJ.out.tab
179.59 kB
iCount RNA-maps
IgG_grouped_cdna.tar.gz
421.62 kB
STAR
ddx3x-mutu-20170619-2_trimmed_unmapped.out.mate1.fastq.gz
85.32 MB
ddx3x-mutu-20170619-2_trimmed.bam.bai
4.14 MB
ddx3x-mutu-20170619-2_trimmed_SJ.out.tab
358.68 kB
ddx3x-mutu-20170619-2_trimmed.bam
923.35 MB
ddx3x-mutu-20170619-2_trimmed_stats.txt
1.81 kB
iCount annotate
IgG_grouped_cdna_peaks_annotated.bed.gz
1.14 kB
IgG_grouped_cdna_peaks_annotated.bedgraph
1.75 kB
STAR
ddx3x-mutu-20170619-1_trimmed.bam
15.61 MB
ddx3x-mutu-20170619-1_trimmed.bam.bai
1.74 MB
ddx3x-mutu-20170619-1_trimmed_SJ.out.tab
8.21 kB
ddx3x-mutu-20170619-1_trimmed_unmapped.out.mate1.fastq.gz
5.08 MB
ddx3x-mutu-20170619-1_trimmed.bw
19.10 kB
ddx3x-mutu-20170619-1_trimmed_stats.txt
1.79 kB
iCount xlsites
ddx3x-dohh2-20170619-4_trimmed_singleAndMulti.bed.gz
2.25 MB
ddx3x-dohh2-20170619-4_trimmed_skipped.bam
3.12 kB
ddx3x-dohh2-20170619-4_trimmed_single.bed.gz
773.97 kB
ddx3x-dohh2-20170619-4_trimmed_reads_single.bed.gz
937.97 kB
ddx3x-dohh2-20170619-4_trimmed_single.bedgraph
3.05 MB
iCount RNA-maps
ddx3x-dohh2-20170619-4_trimmed_single.tar.gz
544.10 kB
iCount xlsites
ddx3x-mutu-20170619-3_trimmed_singleAndMulti.bed.gz
3.43 MB
ddx3x-mutu-20170619-3_trimmed_skipped.bam
2.90 kB
ddx3x-mutu-20170619-3_trimmed_single.bed.gz
1.14 MB
ddx3x-mutu-20170619-3_trimmed_reads_single.bed.gz
1.41 MB
ddx3x-mutu-20170619-3_trimmed_single.bedgraph
4.74 MB
iCount xlsites
ddx3x-mutu-20170619-2_trimmed_single.bed.gz
1.09 MB
ddx3x-mutu-20170619-2_trimmed_skipped.bam
2.90 kB
ddx3x-mutu-20170619-2_trimmed_singleAndMulti.bed.gz
3.49 MB
ddx3x-mutu-20170619-2_trimmed_reads_single.bed.gz
1.33 MB
ddx3x-mutu-20170619-2_trimmed_single.bedgraph
4.53 MB
iCount xlsites
ddx3x-mutu-20170619-1_trimmed_reads_single.bed.gz
54.97 kB
ddx3x-mutu-20170619-1_trimmed_singleAndMulti.bed.gz
195.70 kB
ddx3x-mutu-20170619-1_trimmed_single.bed.gz
51.16 kB
ddx3x-mutu-20170619-1_trimmed_skipped.bam
2.90 kB
ddx3x-mutu-20170619-1_trimmed_single.bedgraph
180.53 kB
Paraclu
ddx3x-mutu-20170619-1_trimmed_single_peaks.bed.gz
351 B
iCount summary
ddx3x-dohh2-20170619-4_trimmed_single_summary_gene.tsv
935.01 kB
ddx3x-dohh2-20170619-4_trimmed_single_summary_type.tsv
434 B
ddx3x-dohh2-20170619-4_trimmed_single_summary_subtype.tsv
1015 B
Paraclu
ddx3x-dohh2-20170619-4_trimmed_single_peaks.bed.gz
2.46 kB
iCount summary
ddx3x-mutu-20170619-3_trimmed_single_summary_subtype.tsv
1017 B
ddx3x-mutu-20170619-3_trimmed_single_summary_type.tsv
436 B
ddx3x-mutu-20170619-3_trimmed_single_summary_gene.tsv
1.06 MB
Paraclu
ddx3x-mutu-20170619-3_trimmed_single_peaks.bed.gz
3.59 kB
iCount summary
ddx3x-mutu-20170619-2_trimmed_single_summary_gene.tsv
1.23 MB
ddx3x-mutu-20170619-2_trimmed_single_summary_type.tsv
438 B
ddx3x-mutu-20170619-2_trimmed_single_summary_subtype.tsv
1017 B
iCount RNA-maps
ddx3x-mutu-20170619-2_trimmed_single.tar.gz
786.01 kB
PEKA
ddx3x-dohh2-20170619-4
Directory
ddx3x-dohh2-20170619-4.tar.gz
357.19 kB
PEKA
ddx3x-mutu-20170619-3
Directory
ddx3x-mutu-20170619-3.tar.gz
362.27 kB
iCount summary
ddx3x-mutu-20170619-1_trimmed_single_summary_type.tsv
420 B
ddx3x-mutu-20170619-1_trimmed_single_summary_subtype.tsv
975 B
ddx3x-mutu-20170619-1_trimmed_single_summary_gene.tsv
253.96 kB
PEKA
ddx3x-mutu-20170619-2
Directory
ddx3x-mutu-20170619-2.tar.gz
382.88 kB
iCount RNA-maps
ddx3x-mutu-20170619-1_trimmed_single.tar.gz
350.69 kB
FASTQ file (single-end)
ddx3x-gcbcells-20170427-2.fastq.gz
1.35 GB
ddx3x-gcbcells-20170427-2_fastqc.zip
440.53 kB
FASTQ file (single-end)
ddx3x-gcbcells-20170427-1.fastq.gz
694.62 kB
ddx3x-gcbcells-20170427-1_fastqc.zip
585.95 kB
FASTQ file (single-end)
ddx3x-u2932-20170117-2.fastq.gz
1.15 GB
ddx3x-u2932-20170117-2_fastqc.zip
441.62 kB
FASTQ file (single-end)
ddx3x-raji-20170117-3_fastqc.zip
806.58 kB
ddx3x-raji-20170117-3.fastq.gz
129.07 MB
FASTQ file (single-end)
demux_nomatch.fastq.gz
459.03 MB
demux_nomatch_fastqc.zip
469.89 kB
iCount RNA-maps
ddx3x-raji-20170117-3_trimmed_single.tar.gz
416.48 kB
Paraclu
ddx3x-raji-20170117-3_trimmed_single_peaks.bed.gz
531 B
Cutadapt (single-end)
ddx3x-raji-20170117-3_trimmed.fastq.gz
128.25 MB
iCount RNA-maps
ddx3x-u2932-20170117-2_trimmed_single.tar.gz
1.04 MB
Paraclu
ddx3x-u2932-20170117-2_trimmed_single_peaks.bed.gz
36.62 kB
FASTQ file (single-end)
ddx3x-mutu-20170117-1_fastqc.zip
444.92 kB
ddx3x-mutu-20170117-1.fastq.gz
882.39 MB
Cutadapt (single-end)
ddx3x-mutu-20170117-1_trimmed.fastq.gz
899.84 MB
iCount summary
ddx3x-mutu-20170117-1_trimmed_single_summary_type.tsv
444 B
ddx3x-mutu-20170117-1_trimmed_single_summary_subtype.tsv
1.01 kB
ddx3x-mutu-20170117-1_trimmed_single_summary_gene.tsv
1.70 MB
Paraclu
ddx3x-mutu-20170117-1_trimmed_single_peaks.bed.gz
56.98 kB
FASTQ file (single-end)
ddx3x-bjab-20170117-5.fastq.gz
534.07 MB
ddx3x-bjab-20170117-5_fastqc.zip
528.30 kB
Cutadapt (single-end)
ddx3x-bjab-20170117-5_trimmed.fastq.gz
525.58 MB
iCount xlsites
ddx3x-bjab-20170117-5_trimmed_singleAndMulti.bed.gz
2.29 MB
ddx3x-bjab-20170117-5_trimmed_skipped.bam
3.05 kB
ddx3x-bjab-20170117-5_trimmed_single.bed.gz
612.39 kB
ddx3x-bjab-20170117-5_trimmed_single.bedgraph
2.34 MB
ddx3x-bjab-20170117-5_trimmed_reads_single.bed.gz
726.89 kB
iCount summary
ddx3x-bjab-20170117-5_trimmed_single_summary_gene.tsv
1.07 MB
ddx3x-bjab-20170117-5_trimmed_single_summary_type.tsv
444 B
ddx3x-bjab-20170117-5_trimmed_single_summary_subtype.tsv
1018 B
iCount RNA-maps
ddx3x-bjab-20170117-5_trimmed_single.tar.gz
668.82 kB
FASTQ file (single-end)
ddx3x-dohh2-20170117-4.fastq.gz
1.02 GB
ddx3x-dohh2-20170117-4_fastqc.zip
502.81 kB
Cutadapt (single-end)
ddx3x-dohh2-20170117-4_trimmed.fastq.gz
814.28 MB
iCount summary
ddx3x-dohh2-20170117-4_trimmed_single_summary_type.tsv
437 B
ddx3x-dohh2-20170117-4_trimmed_single_summary_subtype.tsv
1010 B
ddx3x-dohh2-20170117-4_trimmed_single_summary_gene.tsv
785.83 kB
iCount RNA-maps
ddx3x-dohh2-20170117-4_trimmed_single.tar.gz
508.63 kB
PEKA
ddx3x-dohh2-20170117-4
Directory
ddx3x-dohh2-20170117-4.tar.gz
300.81 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
1.72 GB
demux_nomatch_fastqc.zip
519.31 kB
Paraclu
ddx3x-gcbcells-20170427-2_trimmed_single_peaks.bed.gz
50.70 kB
iCount RNA-maps
ddx3x-gcbcells-20170427-2_trimmed_single.tar.gz
1.06 MB
PEKA
ddx3x-gcbcells-20170427-2
Directory
ddx3x-gcbcells-20170427-2.tar.gz
410.83 kB
Cutadapt (single-end)
ddx3x-gcbcells-20170427-2_trimmed.fastq.gz
1.27 GB
iCount RNA-maps
ddx3x-gcbcells-20170427-1_trimmed_single.tar.gz
212.43 kB
Paraclu
ddx3x-gcbcells-20170427-1_trimmed_single_peaks.bed.gz
76 B
PEKA
ddx3x-gcbcells-20170427-1.tar.gz
131 B
FASTQ file (single-end)
ddx3x-gcbcells-20170427-3.fastq.gz
1.54 GB
ddx3x-gcbcells-20170427-3_fastqc.zip
452.82 kB
iCount summary
ddx3x-gcbcells-20170427-3_trimmed_single_summary_type.tsv
440 B
ddx3x-gcbcells-20170427-3_trimmed_single_summary_subtype.tsv
1.00 kB
ddx3x-gcbcells-20170427-3_trimmed_single_summary_gene.tsv
1.48 MB
iCount RNA-maps
ddx3x-gcbcells-20170427-3_trimmed_single.tar.gz
953.64 kB
Paraclu
ddx3x-gcbcells-20170427-3_trimmed_single_peaks.bed.gz
31.53 kB
Cutadapt (single-end)
ddx3x-u2932-20170117-2_trimmed.fastq.gz
1.15 GB
Cutadapt (single-end)
ddx3x-gcbcells-20170427-1_trimmed.fastq.gz
618.30 kB
STAR
ddx3x-raji-20170117-3_trimmed_unmapped.out.mate1.fastq.gz
103.00 MB
ddx3x-raji-20170117-3_trimmed.bam.bai
1.88 MB
ddx3x-raji-20170117-3_trimmed_SJ.out.tab
24.95 kB
ddx3x-raji-20170117-3_trimmed_stats.txt
1.80 kB
ddx3x-raji-20170117-3_trimmed.bam
191.19 MB
Cutadapt (single-end)
ddx3x-gcbcells-20170427-3_trimmed.fastq.gz
1.14 GB
STAR
ddx3x-bjab-20170117-5_trimmed_unmapped.out.mate1.fastq.gz
152.11 MB
ddx3x-bjab-20170117-5_trimmed.bam.bai
3.84 MB
ddx3x-bjab-20170117-5_trimmed.bam
1.59 GB
ddx3x-bjab-20170117-5_trimmed_stats.txt
1.82 kB
ddx3x-bjab-20170117-5_trimmed_SJ.out.tab
265.96 kB
STAR
ddx3x-gcbcells-20170427-1_trimmed_unmapped.out.mate1.fastq.gz
241.29 kB
ddx3x-gcbcells-20170427-1_trimmed.bam
2.35 MB
ddx3x-gcbcells-20170427-1_trimmed_stats.txt
1.79 kB
ddx3x-gcbcells-20170427-1_trimmed.bam.bai
1.43 MB
ddx3x-gcbcells-20170427-1_trimmed_SJ.out.tab
1.17 kB
ddx3x-gcbcells-20170427-1_trimmed.bw
17.63 kB
iCount xlsites
ddx3x-raji-20170117-3_trimmed_single.bed.gz
68.09 kB
ddx3x-raji-20170117-3_trimmed_reads_single.bed.gz
78.23 kB
ddx3x-raji-20170117-3_trimmed_single.bedgraph
235.27 kB
ddx3x-raji-20170117-3_trimmed_skipped.bam
3.07 kB
ddx3x-raji-20170117-3_trimmed_singleAndMulti.bed.gz
310.58 kB
STAR
ddx3x-mutu-20170117-1_trimmed_unmapped.out.mate1.fastq.gz
132.40 MB
ddx3x-mutu-20170117-1_trimmed.bam.bai
5.59 MB
ddx3x-mutu-20170117-1_trimmed.bam
3.29 GB
ddx3x-mutu-20170117-1_trimmed_stats.txt
1.82 kB
ddx3x-mutu-20170117-1_trimmed_SJ.out.tab
1.18 MB
STAR
ddx3x-dohh2-20170117-4_trimmed.bam
2.21 GB
ddx3x-dohh2-20170117-4_trimmed_unmapped.out.mate1.fastq.gz
303.81 MB
ddx3x-dohh2-20170117-4_trimmed.bam.bai
4.14 MB
ddx3x-dohh2-20170117-4_trimmed_SJ.out.tab
113.81 kB
ddx3x-dohh2-20170117-4_trimmed_stats.txt
1.82 kB
iCount RNA-maps
GCBcells_grouped_cdna.tar.gz
1.34 MB
STAR
ddx3x-u2932-20170117-2_trimmed.bam
3.69 GB
ddx3x-u2932-20170117-2_trimmed.bam.bai
4.99 MB
ddx3x-u2932-20170117-2_trimmed_unmapped.out.mate1.fastq.gz
167.71 MB
ddx3x-u2932-20170117-2_trimmed_stats.txt
1.82 kB
ddx3x-u2932-20170117-2_trimmed_SJ.out.tab
761.53 kB
iCount RNA-maps
Mutu_grouped_cdna.tar.gz
1.54 MB
iCount annotate
GCBcells_grouped_cdna_annotated.bed.gz
4.13 MB
GCBcells_grouped_cdna_annotated.bedgraph
12.68 MB
iCount RNA-maps
U2932_grouped_cdna.tar.gz
1.10 MB
iCount annotate
Mutu_grouped_cdna_annotated.bedgraph
19.86 MB
Mutu_grouped_cdna_annotated.bed.gz
6.09 MB
STAR
ddx3x-gcbcells-20170427-2_trimmed.bam.bai
5.18 MB
ddx3x-gcbcells-20170427-2_trimmed.bam
3.78 GB
ddx3x-gcbcells-20170427-2_trimmed_stats.txt
1.82 kB
ddx3x-gcbcells-20170427-2_trimmed_unmapped.out.mate1.fastq.gz
254.79 MB
ddx3x-gcbcells-20170427-2_trimmed_SJ.out.tab
759.35 kB
iCount annotate
U2932_grouped_cdna_annotated.bedgraph
9.54 MB
U2932_grouped_cdna_annotated.bed.gz
3.21 MB
iCount xlsites
ddx3x-gcbcells-20170427-1_trimmed_singleAndMulti.bed.gz
17.38 kB
ddx3x-gcbcells-20170427-1_trimmed_single.bed.gz
2.58 kB
ddx3x-gcbcells-20170427-1_trimmed_single.bedgraph
7.83 kB
ddx3x-gcbcells-20170427-1_trimmed_reads_single.bed.gz
2.78 kB
ddx3x-gcbcells-20170427-1_trimmed_skipped.bam
2.90 kB
iCount summary
ddx3x-raji-20170117-3_trimmed_single_summary_gene.tsv
337.51 kB
ddx3x-raji-20170117-3_trimmed_single_summary_subtype.tsv
991 B
ddx3x-raji-20170117-3_trimmed_single_summary_type.tsv
429 B
iCount summary
IgG_grouped_cdna_summary_type.tsv
425 B
IgG_grouped_cdna_summary_subtype.tsv
985 B
IgG_grouped_cdna_summary_gene.tsv
472.12 kB
STAR
ddx3x-gcbcells-20170427-3_trimmed_unmapped.out.mate1.fastq.gz
364.54 MB
ddx3x-gcbcells-20170427-3_trimmed.bam.bai
4.90 MB
ddx3x-gcbcells-20170427-3_trimmed.bam
3.52 GB
ddx3x-gcbcells-20170427-3_trimmed_SJ.out.tab
598.52 kB
ddx3x-gcbcells-20170427-3_trimmed_stats.txt
1.82 kB
Paraclu
ddx3x-bjab-20170117-5_trimmed_single_peaks.bed.gz
7.05 kB
iCount xlsites
ddx3x-dohh2-20170117-4_trimmed_skipped.bam
3.17 kB
ddx3x-dohh2-20170117-4_trimmed_single.bed.gz
290.00 kB
ddx3x-dohh2-20170117-4_trimmed_singleAndMulti.bed.gz
1.64 MB
ddx3x-dohh2-20170117-4_trimmed_reads_single.bed.gz
318.79 kB
ddx3x-dohh2-20170117-4_trimmed_single.bedgraph
1.02 MB
iCount summary
ddx3x-gcbcells-20170427-1_trimmed_single_summary_type.tsv
405 B
ddx3x-gcbcells-20170427-1_trimmed_single_summary_gene.tsv
15.60 kB
ddx3x-gcbcells-20170427-1_trimmed_single_summary_subtype.tsv
566 B
Paraclu
ddx3x-dohh2-20170117-4_trimmed_single_peaks.bed.gz
4.13 kB
iCount xlsites
ddx3x-mutu-20170117-1_trimmed_skipped.bam
3.49 kB
ddx3x-mutu-20170117-1_trimmed_single.bedgraph
15.77 MB
ddx3x-mutu-20170117-1_trimmed_single.bed.gz
3.58 MB
ddx3x-mutu-20170117-1_trimmed_singleAndMulti.bed.gz
10.11 MB
ddx3x-mutu-20170117-1_trimmed_reads_single.bed.gz
4.32 MB
iCount xlsites
ddx3x-u2932-20170117-2_trimmed_skipped.bam
3.49 kB
ddx3x-u2932-20170117-2_trimmed_singleAndMulti.bed.gz
6.71 MB
ddx3x-u2932-20170117-2_trimmed_reads_single.bed.gz
2.36 MB
ddx3x-u2932-20170117-2_trimmed_single.bedgraph
8.15 MB
ddx3x-u2932-20170117-2_trimmed_single.bed.gz
1.96 MB
iCount RNA-maps
ddx3x-mutu-20170117-1_trimmed_single.tar.gz
1.41 MB
iCount summary
ddx3x-u2932-20170117-2_trimmed_single_summary_subtype.tsv
1.01 kB
ddx3x-u2932-20170117-2_trimmed_single_summary_type.tsv
447 B
ddx3x-u2932-20170117-2_trimmed_single_summary_gene.tsv
1.61 MB
PEKA
ddx3x-bjab-20170117-5
Directory
ddx3x-bjab-20170117-5.tar.gz
327.68 kB
PEKA
ddx3x-mutu-20170117-1
Directory
ddx3x-mutu-20170117-1.tar.gz
454.35 kB
PEKA
ddx3x-u2932-20170117-2.tar.gz
396.68 kB
ddx3x-u2932-20170117-2
Directory
iCount xlsites
ddx3x-gcbcells-20170427-2_trimmed_single.bed.gz
1.73 MB
ddx3x-gcbcells-20170427-2_trimmed_reads_single.bed.gz
2.08 MB
ddx3x-gcbcells-20170427-2_trimmed_singleAndMulti.bed.gz
5.75 MB
ddx3x-gcbcells-20170427-2_trimmed_single.bedgraph
7.24 MB
ddx3x-gcbcells-20170427-2_trimmed_skipped.bam
15.41 kB
iCount summary
ddx3x-gcbcells-20170427-2_trimmed_single_summary_type.tsv
438 B
ddx3x-gcbcells-20170427-2_trimmed_single_summary_gene.tsv
1.46 MB
ddx3x-gcbcells-20170427-2_trimmed_single_summary_subtype.tsv
1023 B
iCount xlsites
ddx3x-gcbcells-20170427-3_trimmed_single.bed.gz
1.45 MB
ddx3x-gcbcells-20170427-3_trimmed_skipped.bam
3.45 kB
ddx3x-gcbcells-20170427-3_trimmed_singleAndMulti.bed.gz
6.14 MB
ddx3x-gcbcells-20170427-3_trimmed_reads_single.bed.gz
1.72 MB
ddx3x-gcbcells-20170427-3_trimmed_single.bedgraph
5.91 MB
PEKA
ddx3x-gcbcells-20170427-3
Directory
ddx3x-gcbcells-20170427-3.tar.gz
394.24 kB
iCount group
U2932_grouped_cdna.bed.gz
2.29 MB
U2932_grouped_reads.bed.gz
2.75 MB
U2932_grouped_cdna.bedgraph
9.54 MB
iCount group
GCBcells_grouped_reads.bed.gz
3.58 MB
GCBcells_grouped_cdna.bed.gz
2.99 MB
GCBcells_grouped_cdna.bedgraph
12.68 MB
iCount group
Mutu_grouped_cdna.bed.gz
4.49 MB
Mutu_grouped_reads.bed.gz
5.44 MB
Mutu_grouped_cdna.bedgraph
19.86 MB
iCount group
IgG_grouped_cdna.bed.gz
120.89 kB
IgG_grouped_reads.bed.gz
138.89 kB
IgG_grouped_cdna.bedgraph
441.65 kB
Paraclu
U2932_grouped_cdna_peaks.bed.gz
52.02 kB
Paraclu
Mutu_grouped_cdna_peaks.bed.gz
77.24 kB
Paraclu
GCBcells_grouped_cdna_peaks.bed.gz
97.95 kB
Paraclu
IgG_grouped_cdna_peaks.bed.gz
696 B
PEKA
Mutu_grouped_cdna
Directory
Mutu_grouped_cdna.tar.gz
451.56 kB
PEKA
U2932_grouped_cdna
Directory
U2932_grouped_cdna.tar.gz
404.82 kB
PEKA
IgG_grouped_cdna
Directory
IgG_grouped_cdna.tar.gz
261.04 kB
PEKA
GCBcells_grouped_cdna
Directory
GCBcells_grouped_cdna.tar.gz
444.99 kB
PEKA
U2932_grouped_cdna.tar.gz
491.39 kB
U2932_grouped_cdna
Directory
PEKA
Mutu_grouped_cdna
Directory
Mutu_grouped_cdna.tar.gz
553.46 kB
PEKA
GCBcells_grouped_cdna
Directory
GCBcells_grouped_cdna.tar.gz
535.00 kB
PEKA
IgG_grouped_cdna
Directory
IgG_grouped_cdna.tar.gz
261.54 kB
PEKA
U2932_grouped_cdna
Directory
U2932_grouped_cdna.tar.gz
974.54 kB
PEKA
Mutu_grouped_cdna.tar.gz
1.13 MB
Mutu_grouped_cdna
Directory
PEKA
GCBcells_grouped_cdna
Directory
GCBcells_grouped_cdna.tar.gz
1.06 MB
iCount summary
Mutu_grouped_cdna_summary_gene.tsv
1.83 MB
Mutu_grouped_cdna_summary_type.tsv
448 B
Mutu_grouped_cdna_summary_subtype.tsv
1.01 kB
iCount summary
GCBcells_grouped_cdna_summary_type.tsv
447 B
GCBcells_grouped_cdna_summary_gene.tsv
1.80 MB
GCBcells_grouped_cdna_summary_subtype.tsv
1.00 kB
iCount summary
U2932_grouped_cdna_summary_type.tsv
449 B
U2932_grouped_cdna_summary_gene.tsv
1.71 MB
U2932_grouped_cdna_summary_subtype.tsv
1.01 kB
iCount summary
Mutu_grouped_cdna_summary_subtype.tsv
1.01 kB
Mutu_grouped_cdna_summary_type.tsv
448 B
Mutu_grouped_cdna_summary_gene.tsv
1.83 MB
Upload iCount sample annotation
name_annotation_sheet_20160920.xlsx
222.84 kB
name_annotation_sheet_20160920.tab.gz
699 B
FASTQ file (single-end)
SLX-12129.INLINE.HFN77BBXX.s_4.r_1.fastq.gz
7.81 GB
SLX-12129.INLINE.HFN77BBXX.s_4.r_1_fastqc.zip
482.05 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
534 B
Upload iCount sample annotation
name_annotation_sheet_20170115.tab.gz
668 B
name_annotation_sheet_20170115.xlsx
222.42 kB
FASTQ file (single-end)
SLX-12468.INLINE.HH7JHBBXX.s_6.r_1_20170115.fastq.gz
9.92 GB
SLX-12468.INLINE.HH7JHBBXX.s_6.r_1_20170115_fastqc.zip
490.81 kB
FASTQ file (single-end)
SLX-12467.INLINE.HH7G7BBXX.s_8.r_1_20170116_fastqc.zip
551.70 kB
SLX-12467.INLINE.HH7G7BBXX.s_8.r_1_20170116.fastq.gz
5.91 GB
Upload iCount sample annotation
name_annotation_sheet_20170116.xlsx
222.42 kB
name_annotation_sheet_20170116.tab.gz
660 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
445 B
FASTQ file (single-end)
ddx3x-mutu-20160920.fastq.gz
156.39 MB
ddx3x-mutu-20160920_fastqc.zip
455.08 kB
FASTQ file (single-end)
ddx3x-u2932-20160920.fastq.gz
944.00 MB
ddx3x-u2932-20160920_fastqc.zip
450.60 kB
FASTQ file (single-end)
ddx3x-dohh2-20160920.fastq.gz
1.04 GB
ddx3x-dohh2-20160920_fastqc.zip
435.25 kB
FASTQ file (single-end)
ddx3x-bjab-20160920.fastq.gz
871.32 MB
ddx3x-bjab-20160920_fastqc.zip
426.17 kB
FASTQ file (single-end)
ddx3x-namalwa-20160920_fastqc.zip
442.19 kB
ddx3x-namalwa-20160920.fastq.gz
722.64 MB
FASTQ file (single-end)
ctrl-noab-mutu-20160920.fastq.gz
198.78 MB
ctrl-noab-mutu-20160920_fastqc.zip
781.45 kB
FASTQ file (single-end)
ctrl-noab-dohh2-20160920.fastq.gz
125.88 MB
ctrl-noab-dohh2-20160920_fastqc.zip
552.42 kB
iCount RNA-maps
ctrl-noab-dohh2-20160920_trimmed_single.tar.gz
344.68 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
1.19 GB
demux_nomatch_fastqc.zip
468.61 kB
Paraclu
ctrl-noab-dohh2-20160920_trimmed_single_peaks.bed.gz
296 B
Paraclu
ddx3x-namalwa-20160920_trimmed_single_peaks.bed.gz
7.56 kB
iCount summary
ddx3x-bjab-20160920_trimmed_single_summary_type.tsv
442 B
ddx3x-bjab-20160920_trimmed_single_summary_gene.tsv
1.23 MB
ddx3x-bjab-20160920_trimmed_single_summary_subtype.tsv
1019 B
Paraclu
ddx3x-bjab-20160920_trimmed_single_peaks.bed.gz
11.16 kB
iCount RNA-maps
ddx3x-bjab-20160920_trimmed_single.tar.gz
705.70 kB
Cutadapt (single-end)
ddx3x-bjab-20160920_trimmed.fastq.gz
830.93 MB
Paraclu
ddx3x-dohh2-20160920_trimmed_single_peaks.bed.gz
8.44 kB
FASTQ file (single-end)
ddx3x-raji-20160920_fastqc.zip
445.87 kB
ddx3x-raji-20160920.fastq.gz
644.00 MB
iCount summary
ddx3x-raji-20160920_trimmed_single_summary_subtype.tsv
1010 B
ddx3x-raji-20160920_trimmed_single_summary_type.tsv
436 B
ddx3x-raji-20160920_trimmed_single_summary_gene.tsv
676.67 kB
Paraclu
ddx3x-raji-20160920_trimmed_single_peaks.bed.gz
2.77 kB
iCount RNA-maps
ddx3x-raji-20160920_trimmed_single.tar.gz
469.31 kB
iCount summary
ddx3x-u2932-20160920_trimmed_single_summary_type.tsv
434 B
ddx3x-u2932-20160920_trimmed_single_summary_gene.tsv
677.28 kB
ddx3x-u2932-20160920_trimmed_single_summary_subtype.tsv
1010 B
iCount RNA-maps
ddx3x-u2932-20160920_trimmed_single.tar.gz
471.63 kB
Paraclu
ddx3x-u2932-20160920_trimmed_single_peaks.bed.gz
4.12 kB
iCount xlsites
ddx3x-mutu-20160920_trimmed_single.bed.gz
162.67 kB
ddx3x-mutu-20160920_trimmed_skipped.bam
3.06 kB
ddx3x-mutu-20160920_trimmed_singleAndMulti.bed.gz
802.91 kB
ddx3x-mutu-20160920_trimmed_reads_single.bed.gz
180.38 kB
ddx3x-mutu-20160920_trimmed_single.bedgraph
577.23 kB
Paraclu
ddx3x-mutu-20160920_trimmed_single_peaks.bed.gz
1.48 kB
iCount RNA-maps
ddx3x-mutu-20160920_trimmed_single.tar.gz
448.72 kB
Cutadapt (single-end)
ctrl-noab-mutu-20160920_trimmed.fastq.gz
163.60 MB
Cutadapt (single-end)
ddx3x-namalwa-20160920_trimmed.fastq.gz
687.24 MB
Cutadapt (single-end)
ddx3x-dohh2-20160920_trimmed.fastq.gz
1.03 GB
Cutadapt (single-end)
ddx3x-raji-20160920_trimmed.fastq.gz
646.35 MB
Cutadapt (single-end)
ddx3x-u2932-20160920_trimmed.fastq.gz
915.60 MB
Cutadapt (single-end)
ddx3x-mutu-20160920_trimmed.fastq.gz
141.57 MB
STAR
ctrl-noab-dohh2-20160920_trimmed.bam.bai
1.71 MB
ctrl-noab-dohh2-20160920_trimmed_stats.txt
1.81 kB
ctrl-noab-dohh2-20160920_trimmed.bam
233.17 MB
ctrl-noab-dohh2-20160920_trimmed_unmapped.out.mate1.fastq.gz
31.32 MB
ctrl-noab-dohh2-20160920_trimmed_SJ.out.tab
10.56 kB
STAR
ctrl-noab-mutu-20160920_trimmed.bam
248.35 MB
ctrl-noab-mutu-20160920_trimmed_unmapped.out.mate1.fastq.gz
131.47 MB
ctrl-noab-mutu-20160920_trimmed.bam.bai
1.81 MB
ctrl-noab-mutu-20160920_trimmed_stats.txt
1.80 kB
ctrl-noab-mutu-20160920_trimmed_SJ.out.tab
13.60 kB
STAR
ddx3x-namalwa-20160920_trimmed.bam.bai
4.51 MB
ddx3x-namalwa-20160920_trimmed.bam
1.93 GB
ddx3x-namalwa-20160920_trimmed_unmapped.out.mate1.fastq.gz
161.56 MB
ddx3x-namalwa-20160920_trimmed_SJ.out.tab
192.97 kB
ddx3x-namalwa-20160920_trimmed_stats.txt
1.82 kB
STAR
ddx3x-bjab-20160920_trimmed.bam.bai
4.70 MB
ddx3x-bjab-20160920_trimmed_unmapped.out.mate1.fastq.gz
135.06 MB
ddx3x-bjab-20160920_trimmed.bam
2.11 GB
ddx3x-bjab-20160920_trimmed_SJ.out.tab
336.19 kB
ddx3x-bjab-20160920_trimmed_stats.txt
1.82 kB
STAR
ddx3x-dohh2-20160920_trimmed.bam.bai
3.99 MB
ddx3x-dohh2-20160920_trimmed_stats.txt
1.82 kB
ddx3x-dohh2-20160920_trimmed.bam
2.44 GB
ddx3x-dohh2-20160920_trimmed_unmapped.out.mate1.fastq.gz
196.16 MB
ddx3x-dohh2-20160920_trimmed_SJ.out.tab
157.80 kB
STAR
ddx3x-raji-20160920_trimmed.bam.bai
3.31 MB
ddx3x-raji-20160920_trimmed_stats.txt
1.81 kB
ddx3x-raji-20160920_trimmed_unmapped.out.mate1.fastq.gz
119.36 MB
ddx3x-raji-20160920_trimmed_SJ.out.tab
76.44 kB
ddx3x-raji-20160920_trimmed.bam
1.59 GB
STAR
ddx3x-u2932-20160920_trimmed.bam
1.96 GB
ddx3x-u2932-20160920_trimmed.bam.bai
2.94 MB
ddx3x-u2932-20160920_trimmed_unmapped.out.mate1.fastq.gz
199.32 MB
ddx3x-u2932-20160920_trimmed_SJ.out.tab
79.24 kB
ddx3x-u2932-20160920_trimmed_stats.txt
1.82 kB
STAR
ddx3x-mutu-20160920_trimmed_unmapped.out.mate1.fastq.gz
34.03 MB
ddx3x-mutu-20160920_trimmed.bam
374.57 MB
ddx3x-mutu-20160920_trimmed.bam.bai
2.67 MB
ddx3x-mutu-20160920_trimmed_stats.txt
1.81 kB
ddx3x-mutu-20160920_trimmed_SJ.out.tab
58.19 kB
iCount xlsites
ctrl-noab-dohh2-20160920_trimmed_single.bed.gz
34.52 kB
ctrl-noab-dohh2-20160920_trimmed_skipped.bam
2.90 kB
ctrl-noab-dohh2-20160920_trimmed_reads_single.bed.gz
38.12 kB
ctrl-noab-dohh2-20160920_trimmed_singleAndMulti.bed.gz
191.77 kB
ctrl-noab-dohh2-20160920_trimmed_single.bedgraph
113.47 kB
iCount xlsites
ctrl-noab-mutu-20160920_trimmed_single.bed.gz
41.68 kB
ctrl-noab-mutu-20160920_trimmed_single.bedgraph
138.42 kB
ctrl-noab-mutu-20160920_trimmed_singleAndMulti.bed.gz
273.65 kB
ctrl-noab-mutu-20160920_trimmed_skipped.bam
3.08 kB
ctrl-noab-mutu-20160920_trimmed_reads_single.bed.gz
46.25 kB
iCount RNA-maps
ctrl-noab-mutu-20160920_trimmed_single.tar.gz
354.13 kB
FASTQ file (single-end)
ddx3x-mutu-20170116-6_fastqc.zip
673.06 kB
ddx3x-mutu-20170116-6.fastq.gz
57.15 MB
iCount xlsites
ddx3x-namalwa-20160920_trimmed_skipped.bam
3.07 kB
ddx3x-namalwa-20160920_trimmed_singleAndMulti.bed.gz
2.70 MB
ddx3x-namalwa-20160920_trimmed_single.bed.gz
529.08 kB
ddx3x-namalwa-20160920_trimmed_reads_single.bed.gz
596.68 kB
ddx3x-namalwa-20160920_trimmed_single.bedgraph
1.91 MB
FASTQ file (single-end)
ddx3x-raji-20170116-3.fastq.gz
779.23 MB
ddx3x-raji-20170116-3_fastqc.zip
500.08 kB
FASTQ file (single-end)
ddx3x-dohh2-20170116-4.fastq.gz
497.05 MB
ddx3x-dohh2-20170116-4_fastqc.zip
537.04 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
442 B
iCount xlsites
ddx3x-bjab-20160920_trimmed_skipped.bam
3.30 kB
ddx3x-bjab-20160920_trimmed_singleAndMulti.bed.gz
3.31 MB
ddx3x-bjab-20160920_trimmed_single.bedgraph
3.31 MB
ddx3x-bjab-20160920_trimmed_single.bed.gz
875.82 kB
ddx3x-bjab-20160920_trimmed_reads_single.bed.gz
1.01 MB
FASTQ file (single-end)
ddx3x-u2932-20170115-2_fastqc.zip
423.56 kB
ddx3x-u2932-20170115-2.fastq.gz
1.06 GB
FASTQ file (single-end)
ddx3x-raji-20170115-3.fastq.gz
1.46 GB
ddx3x-raji-20170115-3_fastqc.zip
431.85 kB
iCount xlsites
ddx3x-dohh2-20160920_trimmed_single.bed.gz
419.47 kB
ddx3x-dohh2-20160920_trimmed_skipped.bam
3.21 kB
ddx3x-dohh2-20160920_trimmed_singleAndMulti.bed.gz
1.88 MB
ddx3x-dohh2-20160920_trimmed_reads_single.bed.gz
463.38 kB
ddx3x-dohh2-20160920_trimmed_single.bedgraph
1.49 MB
FASTQ file (single-end)
ddx3x-dohh2-20170115-4.fastq.gz
1.19 GB
ddx3x-dohh2-20170115-4_fastqc.zip
430.10 kB
iCount xlsites
ddx3x-raji-20160920_trimmed_skipped.bam
2.90 kB
ddx3x-raji-20160920_trimmed_single.bed.gz
240.10 kB
ddx3x-raji-20160920_trimmed_reads_single.bed.gz
259.56 kB
ddx3x-raji-20160920_trimmed_singleAndMulti.bed.gz
1.20 MB
ddx3x-raji-20160920_trimmed_single.bedgraph
862.90 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
1.63 GB
demux_nomatch_fastqc.zip
479.82 kB
iCount summary
ctrl-noab-dohh2-20160920_trimmed_single_summary_gene.tsv
152.88 kB
ctrl-noab-dohh2-20160920_trimmed_single_summary_type.tsv
428 B
ctrl-noab-dohh2-20160920_trimmed_single_summary_subtype.tsv
988 B
PEKA
ctrl-noab-dohh2-20160920.tar.gz
131 B
iCount summary
ctrl-noab-mutu-20160920_trimmed_single_summary_type.tsv
424 B
ctrl-noab-mutu-20160920_trimmed_single_summary_subtype.tsv
982 B
ctrl-noab-mutu-20160920_trimmed_single_summary_gene.tsv
191.32 kB
Paraclu
ctrl-noab-mutu-20160920_trimmed_single_peaks.bed.gz
411 B
FASTQ file (single-end)
ddx3x-u2932-20170116-2.fastq.gz
350.09 MB
ddx3x-u2932-20170116-2_fastqc.zip
446.48 kB
Paraclu
ddx3x-mutu-20170116-6_trimmed_single_peaks.bed.gz
549 B
PEKA
ddx3x-mutu-20170116-6
Directory
ddx3x-mutu-20170116-6.tar.gz
191.91 kB
FASTQ file (single-end)
ddx3x-bjab-20170116-5.fastq.gz
602.40 MB
ddx3x-bjab-20170116-5_fastqc.zip
463.17 kB
iCount summary
ddx3x-bjab-20170116-5_trimmed_single_summary_type.tsv
438 B
ddx3x-bjab-20170116-5_trimmed_single_summary_gene.tsv
1.20 MB
ddx3x-bjab-20170116-5_trimmed_single_summary_subtype.tsv
1015 B
Paraclu
ddx3x-bjab-20170116-5_trimmed_single_peaks.bed.gz
18.11 kB
Cutadapt (single-end)
ddx3x-bjab-20170116-5_trimmed.fastq.gz
554.54 MB
Cutadapt (single-end)
ddx3x-dohh2-20170116-4_trimmed.fastq.gz
310.73 MB
iCount RNA-maps
ddx3x-dohh2-20170116-4_trimmed_single.tar.gz
520.89 kB
Paraclu
ddx3x-dohh2-20170116-4_trimmed_single_peaks.bed.gz
2.03 kB
Cutadapt (single-end)
ddx3x-raji-20170116-3_trimmed.fastq.gz
729.83 MB
iCount RNA-maps
ddx3x-raji-20170116-3_trimmed_single.tar.gz
500.68 kB
Cutadapt (single-end)
ddx3x-u2932-20170116-2_trimmed.fastq.gz
244.78 MB
iCount RNA-maps
ddx3x-u2932-20170116-2_trimmed_single.tar.gz
548.28 kB
Paraclu
ddx3x-u2932-20170116-2_trimmed_single_peaks.bed.gz
2.78 kB
FASTQ file (single-end)
ddx3x-mutu-20170116-1.fastq.gz
472.52 MB
ddx3x-mutu-20170116-1_fastqc.zip
416.18 kB
iCount RNA-maps
ddx3x-mutu-20170116-1_trimmed_single.tar.gz
639.85 kB
iCount summary
ddx3x-namalwa-20160920_trimmed_single_summary_type.tsv
439 B
ddx3x-namalwa-20160920_trimmed_single_summary_gene.tsv
1.08 MB
ddx3x-namalwa-20160920_trimmed_single_summary_subtype.tsv
1010 B
iCount RNA-maps
ddx3x-namalwa-20160920_trimmed_single.tar.gz
581.52 kB
PEKA
ddx3x-namalwa-20160920
Directory
ddx3x-namalwa-20160920.tar.gz
331.57 kB
FASTQ file (single-end)
ddx3x-mutu-20170115-1.fastq.gz
3.41 MB
ddx3x-mutu-20170115-1_fastqc.zip
586.73 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
1.35 GB
demux_nomatch_fastqc.zip
531.63 kB
FASTQ file (single-end)
ddx3x-mutu-20170115-6.fastq.gz
61.11 MB
ddx3x-mutu-20170115-6_fastqc.zip
815.67 kB
Cutadapt (single-end)
ddx3x-mutu-20170115-6_trimmed.fastq.gz
61.58 MB
iCount RNA-maps
ddx3x-mutu-20170115-6_trimmed_single.tar.gz
270.94 kB
PEKA
ddx3x-mutu-20170115-6.tar.gz
126 B
FASTQ file (single-end)
ddx3x-bjab-20160920-5.fastq.gz
1.52 GB
ddx3x-bjab-20160920-5_fastqc.zip
427.49 kB
iCount summary
ddx3x-bjab-20160920-5_trimmed_single_summary_subtype.tsv
1023 B
ddx3x-bjab-20160920-5_trimmed_single_summary_gene.tsv
1.30 MB
ddx3x-bjab-20160920-5_trimmed_single_summary_type.tsv
443 B
Paraclu
ddx3x-bjab-20160920-5_trimmed_single_peaks.bed.gz
19.91 kB
PEKA
ddx3x-bjab-20160920-5
Directory
ddx3x-bjab-20160920-5.tar.gz
373.75 kB
Cutadapt (single-end)
ddx3x-bjab-20160920-5_trimmed.fastq.gz
1.44 GB
Paraclu
ddx3x-dohh2-20170115-4_trimmed_single_peaks.bed.gz
6.50 kB
Cutadapt (single-end)
ddx3x-dohh2-20170115-4_trimmed.fastq.gz
1.18 GB
Cutadapt (single-end)
ddx3x-raji-20170115-3_trimmed.fastq.gz
1.47 GB
iCount summary
ddx3x-raji-20170115-3_trimmed_single_summary_subtype.tsv
1.00 kB
ddx3x-raji-20170115-3_trimmed_single_summary_type.tsv
440 B
ddx3x-raji-20170115-3_trimmed_single_summary_gene.tsv
900.72 kB
Paraclu
ddx3x-raji-20170115-3_trimmed_single_peaks.bed.gz
6.40 kB
iCount RNA-maps
ddx3x-raji-20170115-3_trimmed_single.tar.gz
519.04 kB
Cutadapt (single-end)
ddx3x-u2932-20170115-2_trimmed.fastq.gz
1.07 GB
iCount RNA-maps
ddx3x-u2932-20170115-2_trimmed_single.tar.gz
473.19 kB
Paraclu
ddx3x-u2932-20170115-2_trimmed_single_peaks.bed.gz
4.00 kB
iCount summary
ddx3x-mutu-20170115-1_trimmed_single_summary_type.tsv
411 B
ddx3x-mutu-20170115-1_trimmed_single_summary_subtype.tsv
892 B
ddx3x-mutu-20170115-1_trimmed_single_summary_gene.tsv
161.24 kB
Paraclu
ddx3x-mutu-20170115-1_trimmed_single_peaks.bed.gz
146 B
PEKA
ddx3x-mutu-20170115-1.tar.gz
126 B
iCount summary
ddx3x-dohh2-20160920_trimmed_single_summary_type.tsv
437 B
ddx3x-dohh2-20160920_trimmed_single_summary_subtype.tsv
1020 B
ddx3x-dohh2-20160920_trimmed_single_summary_gene.tsv
987.14 kB
iCount RNA-maps
ddx3x-dohh2-20160920_trimmed_single.tar.gz
539.70 kB
PEKA
ctrl-noab-mutu-20160920
Directory
ctrl-noab-mutu-20160920.tar.gz
59.95 kB
iCount summary
ddx3x-mutu-20160920_trimmed_single_summary_type.tsv
432 B
ddx3x-mutu-20160920_trimmed_single_summary_subtype.tsv
1002 B
ddx3x-mutu-20160920_trimmed_single_summary_gene.tsv
574.75 kB
Cutadapt (single-end)
ddx3x-mutu-20170116-6_trimmed.fastq.gz
41.50 MB
Cutadapt (single-end)
ddx3x-mutu-20170116-1_trimmed.fastq.gz
480.56 MB
iCount xlsites
ddx3x-u2932-20160920_trimmed_skipped.bam
3.22 kB
ddx3x-u2932-20160920_trimmed_single.bed.gz
220.29 kB
ddx3x-u2932-20160920_trimmed_singleAndMulti.bed.gz
886.72 kB
ddx3x-u2932-20160920_trimmed_single.bedgraph
793.48 kB
ddx3x-u2932-20160920_trimmed_reads_single.bed.gz
240.33 kB
Cutadapt (single-end)
ddx3x-mutu-20170115-1_trimmed.fastq.gz
3.53 MB
PEKA
ddx3x-bjab-20160920
Directory
ddx3x-bjab-20160920.tar.gz
368.68 kB
PEKA
ddx3x-dohh2-20160920
Directory
ddx3x-dohh2-20160920.tar.gz
318.62 kB
PEKA
ddx3x-raji-20160920
Directory
ddx3x-raji-20160920.tar.gz
276.53 kB
PEKA
ddx3x-mutu-20160920.tar.gz
284.64 kB
ddx3x-mutu-20160920
Directory
STAR
ddx3x-mutu-20170116-6_trimmed_unmapped.out.mate1.fastq.gz
21.27 MB
ddx3x-mutu-20170116-6_trimmed.bam.bai
1.91 MB
ddx3x-mutu-20170116-6_trimmed_stats.txt
1.80 kB
ddx3x-mutu-20170116-6_trimmed.bam
109.56 MB
ddx3x-mutu-20170116-6_trimmed_SJ.out.tab
25.07 kB
STAR
ddx3x-dohh2-20170116-4_trimmed.bam.bai
2.59 MB
ddx3x-dohh2-20170116-4_trimmed.bam
668.52 MB
ddx3x-dohh2-20170116-4_trimmed_unmapped.out.mate1.fastq.gz
159.30 MB
ddx3x-dohh2-20170116-4_trimmed_stats.txt
1.81 kB
ddx3x-dohh2-20170116-4_trimmed_SJ.out.tab
94.79 kB
STAR
ddx3x-u2932-20170116-2_trimmed_unmapped.out.mate1.fastq.gz
54.77 MB
ddx3x-u2932-20170116-2_trimmed.bam.bai
2.95 MB
ddx3x-u2932-20170116-2_trimmed_stats.txt
1.81 kB
ddx3x-u2932-20170116-2_trimmed.bam
701.07 MB
ddx3x-u2932-20170116-2_trimmed_SJ.out.tab
138.76 kB
STAR
ddx3x-bjab-20170116-5_trimmed_SJ.out.tab
581.31 kB
ddx3x-bjab-20170116-5_trimmed_unmapped.out.mate1.fastq.gz
114.94 MB
ddx3x-bjab-20170116-5_trimmed.bam
1.80 GB
ddx3x-bjab-20170116-5_trimmed_stats.txt
1.82 kB
ddx3x-bjab-20170116-5_trimmed.bam.bai
4.64 MB
STAR
ddx3x-mutu-20170115-6_trimmed_unmapped.out.mate1.fastq.gz
54.80 MB
ddx3x-mutu-20170115-6_trimmed.bam.bai
1.48 MB
ddx3x-mutu-20170115-6_trimmed.bam
79.97 MB
ddx3x-mutu-20170115-6_trimmed.bw
18.08 kB
ddx3x-mutu-20170115-6_trimmed_stats.txt
1.80 kB
ddx3x-mutu-20170115-6_trimmed_SJ.out.tab
2.96 kB
Cutadapt (single-end)
ddx3x-u2932-20170115-2_trimmed_trimmed.fastq.gz
1.07 GB
Cutadapt (single-end)
ddx3x-u2932-20170116-2_trimmed_trimmed.fastq.gz
244.78 MB
Cutadapt (single-end)
ddx3x-u2932-20170117-2_trimmed_trimmed.fastq.gz
1.15 GB
Cutadapt (single-end)
ddx3x-gcbcells-20170427-3_trimmed_trimmed.fastq.gz
1.14 GB
Cutadapt (single-end)
ddx3x-mutu-20170619-2_trimmed_trimmed.fastq.gz
362.44 MB
Cutadapt (single-end)
ddx3x-mutu-20170117-1_trimmed_trimmed.fastq.gz
899.84 MB
Cutadapt (single-end)
ddx3x-gcbcells-20170427-2_trimmed_trimmed.fastq.gz
1.27 GB
Cutadapt (single-end)
ddx3x-mutu-20170619-2_trimmed_trimmed_trimmed.fastq.gz
362.44 MB
Cutadapt (single-end)
ddx3x-u2932-20170116-2_trimmed_trimmed_trimmed.fastq.gz
244.78 MB
Cutadapt (single-end)
ddx3x-u2932-20170117-2_trimmed_trimmed_trimmed.fastq.gz
1.15 GB
Cutadapt (single-end)
ddx3x-u2932-20170115-2_trimmed_trimmed_trimmed.fastq.gz
1.07 GB
Cutadapt (single-end)
ddx3x-mutu-20170117-1_trimmed_trimmed_trimmed.fastq.gz
899.84 MB
Cutadapt (single-end)
ddx3x-gcbcells-20170427-3_trimmed_trimmed_trimmed.fastq.gz
1.14 GB
Cutadapt (single-end)
ddx3x-gcbcells-20170427-2_trimmed_trimmed_trimmed.fastq.gz
1.27 GB
DDX3X_facilitates_MYC_driven_lymphomagenesis
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