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Folder iconSRSF3 promotes pluripotency through Nanog mRNA export

Rahul Arora
March 6, 2020
The establishment and maintenance of pluripotency depend on precise coordination of gene expression. We establish serine-arginine-rich splicing factor 3 (SRSF3) as an essential regulator of RNAs encoding key components of the mouse pluripotency circuitry, SRSF3 ablation resulting in the loss of pluripotency and its overexpression enhancing reprogramming. Strikingly, SRSF3 binds to the core pluripotency transcription factor Nanog mRNA to facilitate its nucleo-cytoplasmic export independent of splicing. In the absence of SRSF3 binding, Nanog mRNA is sequestered in the nucleus and protein levels are severely downregulated. Moreover, SRSF3 controls the alternative splicing of the export factor Nxf1 and RNA regulators with established roles in pluripotency, and the steady-state levels of mRNAs encoding chromatin modifiers. Our investigation links molecular events to cellular functions by demonstrating how SRSF3 regulates the pluripotency genes and uncovers SRSF3-RNA interactions as a critical means to coordinate gene expression during reprogramming, stem cell self-renewal and early development.

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Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
srsf3-esc-gfp-20151114-anko_trimmed.fastq.gz
1.16 MB
Upload iCount sample annotation
20151114_Anko_annotation_sheet.xlsx
14.89 kB
20151114_Anko_annotation_sheet.tab.gz
851 B
iCount xlsites
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srsf3-esc-gfp-20151114-anko_trimmed_skipped.bam
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srsf3-esc-gfp-20151114-anko_trimmed_reads_single.bed.gz
25.99 kB
srsf3-esc-gfp-20151114-anko_trimmed_single.bedgraph
77.86 kB
K-mers
srsf3-esc-srsf3-gfp-20151114-anko
Directory
srsf3-esc-srsf3-gfp-20151114-anko.tar.gz
59.72 kB
iCount summary
srsf3-esc-gfp-20151115-anko_trimmed_single_summary_type.tsv
421 B
srsf3-esc-gfp-20151115-anko_trimmed_single_summary_subtype.tsv
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srsf3-esc-gfp-20151115-anko_trimmed_single_summary_gene.tsv
281.54 kB
STAR
srsf3-esc-srsf3-gfp-20151115-anko_trimmed.bam
41.39 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_unmapped.out.mate1.fastq.gz
2.71 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_stats.txt
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srsf3-esc-srsf3-gfp-20151115-anko_trimmed_SJ.out.tab
219.12 kB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed.bam.bai
3.59 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed.bw
9.66 kB
FASTQ file (single-end)
stderr.txt
1.30 kB
fastqc
Directory
srsf3-esc-srsf3-gfp-20160219-anko.fastq.gz
24.95 MB
srsf3-esc-srsf3-gfp-20160219-anko_fastqc.zip
401.95 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch_fastqc.zip
586.00 kB
stderr.txt
935 B
demux_nomatch.fastq.gz
4.90 GB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
1.92 GB
demux_nomatch_fastqc.zip
491.05 kB
Paraclu
srsf3-esc-gfp-20151114-anko_trimmed_single_peaks.bed.gz
103 B
iCount RNA-maps
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single.tar.gz
1011.69 kB
K-mers
srsf3-esc-srsf3-gfp-20160219-anko-1.tar.gz
135 B
Paraclu
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single_peaks.bed.gz
519 B
Paraclu
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single_peaks.bed.gz
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iCount RNA-maps
srsf3-esc-gfp-20151115-anko_trimmed_single.tar.gz
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Paraclu
srsf3-esc-gfp-20151115-anko_trimmed_single_peaks.bed.gz
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FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.21 kB
SRSF3_nanog_20151114_Anko.fastq.gz
85.87 MB
SRSF3_nanog_20151114_Anko_fastqc.zip
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iCount demultiplex (from annotation file)
demultiplexing_stats.txt
453 B
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
60.61 MB
demux_nomatch_fastqc.zip
599.00 kB
stderr.txt
935 B
Upload iCount sample annotation
20151115_Anko_annotation_sheet.xlsx
14.25 kB
20151115_Anko_annotation_sheet.tab.gz
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fastqc
Directory
srsf3-esc-srsf3-gfp-20151114-anko.fastq.gz
1.19 MB
stderr.txt
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srsf3-esc-srsf3-gfp-20151114-anko_fastqc.zip
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iCount RNA-maps
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FASTQ file (single-end)
fastqc
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srsf3-esc-gfp-20151114-anko.fastq.gz
1.12 MB
srsf3-esc-gfp-20151114-anko_fastqc.zip
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stderr.txt
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iCount RNA-maps
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K-mers
srsf3-esc-gfp-20151114-anko.tar.gz
132 B
Cutadapt (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20151114-anko_trimmed.fastq.gz
1.22 MB
report.txt
669 B
STAR
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_stats.txt
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srsf3-esc-srsf3-gfp-20151114-anko_trimmed_unmapped.out.mate1.fastq.gz
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srsf3-esc-srsf3-gfp-20151114-anko_trimmed_SJ.out.tab
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srsf3-esc-srsf3-gfp-20151114-anko_trimmed.bam.bai
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srsf3-esc-srsf3-gfp-20151114-anko_trimmed.bw
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srsf3-esc-srsf3-gfp-20151114-anko_trimmed.bam
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STAR
srsf3-esc-gfp-20151114-anko_trimmed.bam
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srsf3-esc-gfp-20151114-anko_trimmed.bw
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srsf3-esc-gfp-20151114-anko_trimmed_unmapped.out.mate1.fastq.gz
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srsf3-esc-gfp-20151114-anko_trimmed_SJ.out.tab
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srsf3-esc-gfp-20151114-anko_trimmed_stats.txt
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srsf3-esc-gfp-20151114-anko_trimmed.bam.bai
1.41 MB
iCount xlsites
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_singleAndMulti.bed.gz
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srsf3-esc-srsf3-gfp-20151114-anko_trimmed_reads_single.bed.gz
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srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single.bedgraph
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iCount summary
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single_summary_type.tsv
414 B
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iCount summary
srsf3-esc-gfp-20151114-anko_trimmed_single_summary_type.tsv
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srsf3-esc-gfp-20151114-anko_trimmed_single_summary_subtype.tsv
888 B
srsf3-esc-gfp-20151114-anko_trimmed_single_summary_gene.tsv
147.25 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.15 kB
SRSF3_nanog_20160219_Anko.fastq.gz
7.15 GB
SRSF3_nanog_20160219_Anko_fastqc.zip
582.77 kB
Upload iCount sample annotation
20160219_Anko_annotation_sheet.tab.gz
907 B
20160219_Anko_annotation_sheet.xlsx
14.45 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
640 B
FASTQ file (single-end)
SRSF3_nanog_20151115_Anko.fastq.gz
2.16 GB
fastqc
Directory
SRSF3_nanog_20151115_Anko_fastqc.zip
515.60 kB
stderr.txt
1.15 kB
FASTQ file (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20151115-anko_fastqc.zip
388.13 kB
stderr.txt
1.30 kB
srsf3-esc-srsf3-gfp-20151115-anko.fastq.gz
22.88 MB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
469 B
Paraclu
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single_peaks.bed.gz
5.30 kB
FASTQ file (single-end)
srsf3-esc-gfp-20151115-anko.fastq.gz
12.79 MB
fastqc
Directory
stderr.txt
1.19 kB
srsf3-esc-gfp-20151115-anko_fastqc.zip
434.90 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
srsf3-esc-srsf3-gfp-20151115-anko_trimmed.fastq.gz
23.44 MB
Cutadapt (single-end)
report.txt
663 B
fastqc
Directory
srsf3-esc-gfp-20151115-anko_trimmed.fastq.gz
13.12 MB
iCount xlsites
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single.bed.gz
1.95 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_skipped.bam
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srsf3-esc-srsf3-gfp-20151115-anko_trimmed_singleAndMulti.bed.gz
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srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single.bedgraph
8.66 MB
iCount xlsites
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srsf3-esc-gfp-20151115-anko_trimmed_reads_single.bed.gz
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srsf3-esc-gfp-20151115-anko_trimmed_singleAndMulti.bed.gz
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srsf3-esc-gfp-20151115-anko_trimmed_skipped.bam
1.38 kB
iCount summary
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single_summary_gene.tsv
1.28 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single_summary_type.tsv
428 B
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single_summary_subtype.tsv
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K-mers
srsf3-esc-gfp-20151115-anko.tar.gz
128.11 kB
srsf3-esc-gfp-20151115-anko
Directory
STAR
srsf3-esc-gfp-20151115-anko_trimmed.bam
18.26 MB
srsf3-esc-gfp-20151115-anko_trimmed_unmapped.out.mate1.fastq.gz
1.46 MB
srsf3-esc-gfp-20151115-anko_trimmed.bam.bai
1.62 MB
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srsf3-esc-gfp-20151115-anko_trimmed.bw
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K-mers
srsf3-esc-srsf3-gfp-20151115-anko
Directory
srsf3-esc-srsf3-gfp-20151115-anko.tar.gz
347.80 kB
FASTQ file (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20160219-anko-1.fastq.gz
4.60 MB
stderr.txt
1.34 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_fastqc.zip
462.86 kB
iCount xlsites
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_skipped.bam
1.38 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_singleAndMulti.bed.gz
65.98 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single.bed.gz
19.51 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_reads_single.bed.gz
22.54 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single.bedgraph
65.08 kB
iCount summary
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single_summary_type.tsv
415 B
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single_summary_gene.tsv
118.58 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single_summary_subtype.tsv
711 B
Paraclu
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single_peaks.bed.gz
152 B
iCount RNA-maps
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single.tar.gz
297.08 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.34 kB
srsf3-esc-endog-srsf3-20160219-anko.fastq.gz
28.99 MB
srsf3-esc-endog-srsf3-20160219-anko_fastqc.zip
412.05 kB
iCount summary
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single_summary_type.tsv
421 B
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single_summary_subtype.tsv
994 B
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single_summary_gene.tsv
483.16 kB
Paraclu
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single_peaks.bed.gz
285 B
iCount RNA-maps
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single.tar.gz
416.56 kB
Cutadapt (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed.fastq.gz
4.75 MB
report.txt
671 B
iCount summary
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single_summary_type.tsv
427 B
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single_summary_subtype.tsv
989 B
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single_summary_gene.tsv
824.56 kB
iCount RNA-maps
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553.31 kB
Cutadapt (single-end)
srsf3-esc-endog-srsf3-20160219-anko_trimmed.fastq.gz
29.69 MB
fastqc
Directory
report.txt
671 B
Cutadapt (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20160219-anko_trimmed.fastq.gz
25.56 MB
report.txt
669 B
STAR
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_unmapped.out.mate1.fastq.gz
845.43 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed.bam
6.54 MB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed.bam.bai
1.42 MB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed.bw
4.46 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_SJ.out.tab
2.43 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_stats.txt
1.79 kB
STAR
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_unmapped.out.mate1.fastq.gz
3.61 MB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed.bam
33.60 MB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed.bam.bai
2.71 MB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_SJ.out.tab
46.95 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_stats.txt
1.80 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed.bw
6.43 kB
STAR
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3.99 MB
srsf3-esc-endog-srsf3-20160219-anko_trimmed.bam.bai
1.97 MB
srsf3-esc-endog-srsf3-20160219-anko_trimmed.bam
34.12 MB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_stats.txt
1.80 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_SJ.out.tab
21.15 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed.bw
5.52 kB
iCount xlsites
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1.38 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single.bed.gz
362.97 kB
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435.02 kB
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974.33 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single.bedgraph
1.43 MB
K-mers
srsf3-esc-endog-srsf3-20160219-anko.tar.gz
280.33 kB
srsf3-esc-endog-srsf3-20160219-anko
Directory
K-mers
srsf3-esc-srsf3-gfp-20160219-anko
Directory
srsf3-esc-srsf3-gfp-20160219-anko.tar.gz
288.82 kB
iCount xlsites
srsf3-esc-endog-srsf3-20160219-anko_trimmed_skipped.bam
1.38 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_reads_single.bed.gz
134.71 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_singleAndMulti.bed.gz
339.25 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single.bedgraph
406.55 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single.bed.gz
112.52 kB

SRSF3_ESC_GFP_20151114_Anko

Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
srsf3-esc-gfp-20151114-anko_trimmed.fastq.gz
1.16 MB
iCount xlsites
srsf3-esc-gfp-20151114-anko_trimmed_singleAndMulti.bed.gz
61.76 kB
srsf3-esc-gfp-20151114-anko_trimmed_skipped.bam
1.38 kB
srsf3-esc-gfp-20151114-anko_trimmed_single.bed.gz
22.88 kB
srsf3-esc-gfp-20151114-anko_trimmed_reads_single.bed.gz
25.99 kB
srsf3-esc-gfp-20151114-anko_trimmed_single.bedgraph
77.86 kB
Paraclu
srsf3-esc-gfp-20151114-anko_trimmed_single_peaks.bed.gz
103 B
FASTQ file (single-end)
fastqc
Directory
srsf3-esc-gfp-20151114-anko.fastq.gz
1.12 MB
srsf3-esc-gfp-20151114-anko_fastqc.zip
474.44 kB
stderr.txt
1.19 kB
iCount RNA-maps
srsf3-esc-gfp-20151114-anko_trimmed_single.tar.gz
338.69 kB
K-mers
srsf3-esc-gfp-20151114-anko.tar.gz
132 B
STAR
srsf3-esc-gfp-20151114-anko_trimmed.bam
1.75 MB
srsf3-esc-gfp-20151114-anko_trimmed.bw
4.42 kB
srsf3-esc-gfp-20151114-anko_trimmed_unmapped.out.mate1.fastq.gz
199.87 kB
srsf3-esc-gfp-20151114-anko_trimmed_SJ.out.tab
4.48 kB
srsf3-esc-gfp-20151114-anko_trimmed_stats.txt
1.79 kB
srsf3-esc-gfp-20151114-anko_trimmed.bam.bai
1.41 MB
iCount summary
srsf3-esc-gfp-20151114-anko_trimmed_single_summary_type.tsv
410 B
srsf3-esc-gfp-20151114-anko_trimmed_single_summary_subtype.tsv
888 B
srsf3-esc-gfp-20151114-anko_trimmed_single_summary_gene.tsv
147.25 kB

SRSF3_nanog_20151114_Anko.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.21 kB
SRSF3_nanog_20151114_Anko.fastq.gz
85.87 MB
SRSF3_nanog_20151114_Anko_fastqc.zip
595.60 kB

SRSF3_nanog_20151115_Anko.fastq.gz

FASTQ file (single-end)
SRSF3_nanog_20151115_Anko.fastq.gz
2.16 GB
fastqc
Directory
SRSF3_nanog_20151115_Anko_fastqc.zip
515.60 kB
stderr.txt
1.15 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
60.61 MB
demux_nomatch_fastqc.zip
599.00 kB
stderr.txt
935 B

SRSF3_nanog_20160219_Anko.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.15 kB
SRSF3_nanog_20160219_Anko.fastq.gz
7.15 GB
SRSF3_nanog_20160219_Anko_fastqc.zip
582.77 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
1.92 GB
demux_nomatch_fastqc.zip
491.05 kB

SRSF3_ESC_SRSF3_GFP_20151114_Anko

K-mers
srsf3-esc-srsf3-gfp-20151114-anko
Directory
srsf3-esc-srsf3-gfp-20151114-anko.tar.gz
59.72 kB
Paraclu
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single_peaks.bed.gz
187 B
FASTQ file (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20151114-anko.fastq.gz
1.19 MB
stderr.txt
1.30 kB
srsf3-esc-srsf3-gfp-20151114-anko_fastqc.zip
461.71 kB
iCount RNA-maps
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single.tar.gz
351.64 kB
Cutadapt (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20151114-anko_trimmed.fastq.gz
1.22 MB
report.txt
669 B
STAR
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_stats.txt
1.79 kB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_unmapped.out.mate1.fastq.gz
212.62 kB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_SJ.out.tab
6.33 kB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed.bam.bai
1.51 MB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed.bw
4.46 kB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed.bam
1.92 MB
iCount xlsites
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_singleAndMulti.bed.gz
103.90 kB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_reads_single.bed.gz
51.39 kB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single.bed.gz
46.69 kB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_skipped.bam
1.38 kB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single.bedgraph
163.01 kB
iCount summary
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single_summary_type.tsv
414 B
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single_summary_gene.tsv
264.45 kB
srsf3-esc-srsf3-gfp-20151114-anko_trimmed_single_summary_subtype.tsv
841 B

SRSF3_ESC_GFP_20151115_Anko

iCount summary
srsf3-esc-gfp-20151115-anko_trimmed_single_summary_type.tsv
421 B
srsf3-esc-gfp-20151115-anko_trimmed_single_summary_subtype.tsv
912 B
srsf3-esc-gfp-20151115-anko_trimmed_single_summary_gene.tsv
281.54 kB
iCount RNA-maps
srsf3-esc-gfp-20151115-anko_trimmed_single.tar.gz
372.99 kB
Paraclu
srsf3-esc-gfp-20151115-anko_trimmed_single_peaks.bed.gz
276 B
FASTQ file (single-end)
srsf3-esc-gfp-20151115-anko.fastq.gz
12.79 MB
fastqc
Directory
stderr.txt
1.19 kB
srsf3-esc-gfp-20151115-anko_fastqc.zip
434.90 kB
Cutadapt (single-end)
report.txt
663 B
fastqc
Directory
srsf3-esc-gfp-20151115-anko_trimmed.fastq.gz
13.12 MB
iCount xlsites
srsf3-esc-gfp-20151115-anko_trimmed_single.bed.gz
53.71 kB
srsf3-esc-gfp-20151115-anko_trimmed_reads_single.bed.gz
63.98 kB
srsf3-esc-gfp-20151115-anko_trimmed_single.bedgraph
189.26 kB
srsf3-esc-gfp-20151115-anko_trimmed_singleAndMulti.bed.gz
162.73 kB
srsf3-esc-gfp-20151115-anko_trimmed_skipped.bam
1.38 kB
K-mers
srsf3-esc-gfp-20151115-anko.tar.gz
128.11 kB
srsf3-esc-gfp-20151115-anko
Directory
STAR
srsf3-esc-gfp-20151115-anko_trimmed.bam
18.26 MB
srsf3-esc-gfp-20151115-anko_trimmed_unmapped.out.mate1.fastq.gz
1.46 MB
srsf3-esc-gfp-20151115-anko_trimmed.bam.bai
1.62 MB
srsf3-esc-gfp-20151115-anko_trimmed_SJ.out.tab
7.76 kB
srsf3-esc-gfp-20151115-anko_trimmed_stats.txt
1.80 kB
srsf3-esc-gfp-20151115-anko_trimmed.bw
4.64 kB

SRSF3_ESC_SRSF3_GFP_20160219_Anko_1

K-mers
srsf3-esc-srsf3-gfp-20160219-anko-1.tar.gz
135 B
FASTQ file (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20160219-anko-1.fastq.gz
4.60 MB
stderr.txt
1.34 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_fastqc.zip
462.86 kB
iCount xlsites
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_skipped.bam
1.38 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_singleAndMulti.bed.gz
65.98 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single.bed.gz
19.51 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_reads_single.bed.gz
22.54 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single.bedgraph
65.08 kB
iCount summary
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single_summary_type.tsv
415 B
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single_summary_gene.tsv
118.58 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single_summary_subtype.tsv
711 B
Paraclu
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single_peaks.bed.gz
152 B
iCount RNA-maps
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_single.tar.gz
297.08 kB
Cutadapt (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed.fastq.gz
4.75 MB
report.txt
671 B
STAR
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_unmapped.out.mate1.fastq.gz
845.43 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed.bam
6.54 MB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed.bam.bai
1.42 MB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed.bw
4.46 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_SJ.out.tab
2.43 kB
srsf3-esc-srsf3-gfp-20160219-anko-1_trimmed_stats.txt
1.79 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch_fastqc.zip
586.00 kB
stderr.txt
935 B
demux_nomatch.fastq.gz
4.90 GB

SRSF3_ESC_SRSF3_GFP_20160219_Anko

FASTQ file (single-end)
stderr.txt
1.30 kB
fastqc
Directory
srsf3-esc-srsf3-gfp-20160219-anko.fastq.gz
24.95 MB
srsf3-esc-srsf3-gfp-20160219-anko_fastqc.zip
401.95 kB
Paraclu
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single_peaks.bed.gz
519 B
iCount summary
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single_summary_type.tsv
427 B
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single_summary_subtype.tsv
989 B
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single_summary_gene.tsv
824.56 kB
iCount RNA-maps
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single.tar.gz
553.31 kB
Cutadapt (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20160219-anko_trimmed.fastq.gz
25.56 MB
report.txt
669 B
STAR
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_unmapped.out.mate1.fastq.gz
3.61 MB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed.bam
33.60 MB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed.bam.bai
2.71 MB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_SJ.out.tab
46.95 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_stats.txt
1.80 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed.bw
6.43 kB
iCount xlsites
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_skipped.bam
1.38 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single.bed.gz
362.97 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_reads_single.bed.gz
435.02 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_singleAndMulti.bed.gz
974.33 kB
srsf3-esc-srsf3-gfp-20160219-anko_trimmed_single.bedgraph
1.43 MB
K-mers
srsf3-esc-srsf3-gfp-20160219-anko
Directory
srsf3-esc-srsf3-gfp-20160219-anko.tar.gz
288.82 kB

SRSF3_ESC_SRSF3_GFP_20151115_Anko

STAR
srsf3-esc-srsf3-gfp-20151115-anko_trimmed.bam
41.39 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_unmapped.out.mate1.fastq.gz
2.71 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_stats.txt
1.80 kB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_SJ.out.tab
219.12 kB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed.bam.bai
3.59 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed.bw
9.66 kB
iCount RNA-maps
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single.tar.gz
1011.69 kB
FASTQ file (single-end)
fastqc
Directory
srsf3-esc-srsf3-gfp-20151115-anko_fastqc.zip
388.13 kB
stderr.txt
1.30 kB
srsf3-esc-srsf3-gfp-20151115-anko.fastq.gz
22.88 MB
Paraclu
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single_peaks.bed.gz
5.30 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
srsf3-esc-srsf3-gfp-20151115-anko_trimmed.fastq.gz
23.44 MB
iCount xlsites
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single.bed.gz
1.95 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_skipped.bam
1.59 kB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_reads_single.bed.gz
2.09 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_singleAndMulti.bed.gz
3.75 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single.bedgraph
8.66 MB
iCount summary
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single_summary_gene.tsv
1.28 MB
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single_summary_type.tsv
428 B
srsf3-esc-srsf3-gfp-20151115-anko_trimmed_single_summary_subtype.tsv
1001 B
K-mers
srsf3-esc-srsf3-gfp-20151115-anko
Directory
srsf3-esc-srsf3-gfp-20151115-anko.tar.gz
347.80 kB

SRSF3_ESC_endog_SRSF3_20160219_Anko

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.34 kB
srsf3-esc-endog-srsf3-20160219-anko.fastq.gz
28.99 MB
srsf3-esc-endog-srsf3-20160219-anko_fastqc.zip
412.05 kB
iCount summary
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single_summary_type.tsv
421 B
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single_summary_subtype.tsv
994 B
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single_summary_gene.tsv
483.16 kB
Paraclu
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single_peaks.bed.gz
285 B
iCount RNA-maps
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single.tar.gz
416.56 kB
Cutadapt (single-end)
srsf3-esc-endog-srsf3-20160219-anko_trimmed.fastq.gz
29.69 MB
fastqc
Directory
report.txt
671 B
STAR
srsf3-esc-endog-srsf3-20160219-anko_trimmed_unmapped.out.mate1.fastq.gz
3.99 MB
srsf3-esc-endog-srsf3-20160219-anko_trimmed.bam.bai
1.97 MB
srsf3-esc-endog-srsf3-20160219-anko_trimmed.bam
34.12 MB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_stats.txt
1.80 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_SJ.out.tab
21.15 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed.bw
5.52 kB
K-mers
srsf3-esc-endog-srsf3-20160219-anko.tar.gz
280.33 kB
srsf3-esc-endog-srsf3-20160219-anko
Directory
iCount xlsites
srsf3-esc-endog-srsf3-20160219-anko_trimmed_skipped.bam
1.38 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_reads_single.bed.gz
134.71 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_singleAndMulti.bed.gz
339.25 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single.bedgraph
406.55 kB
srsf3-esc-endog-srsf3-20160219-anko_trimmed_single.bed.gz
112.52 kB