Slamseq_development_naive_epiSC

No Sample

FASTQ file (single-end)

fastqc

Directory

MOD706A19_S105_L004_R1_001.fastq.gz

214.21 MB

stderr.txt

1.17 kB

MOD706A19_S105_L004_R1_001_fastqc.zip

470.57 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.20 MB

STAR

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.bam

4.90 MB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.bam.bai

3.59 kB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.16 MB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_SJ.out.tab

47.12 kB

STAR

MOD706A31_S37_L004_R1_001_preprocessed.bam.bai

3.02 MB

MOD706A31_S37_L004_R1_001_preprocessed.bam

261.86 MB

MOD706A31_S37_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A31_S37_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.94 MB

MOD706A31_S37_L004_R1_001_preprocessed_SJ.out.tab

918.63 kB

MOD706A31_S37_L004_R1_001_preprocessed.bw

5.32 MB

STAR

MOD706A43_S119_L004_R1_001_preprocessed.bam.bai

3.38 MB

MOD706A43_S119_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.43 MB

MOD706A43_S119_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A43_S119_L004_R1_001_preprocessed.bw

8.70 MB

MOD706A43_S119_L004_R1_001_preprocessed.bam

431.81 MB

MOD706A43_S119_L004_R1_001_preprocessed_SJ.out.tab

1.17 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A8_S52_L004_R1_001_preprocessed_downsampled.fastq.gz

63.22 MB

STAR

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam.bai

5.57 kB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.29 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam

7.24 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab

51.95 kB

STAR

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.31 MB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled.bam.bai

416 B

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled.bam

2.48 kB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled_SJ.out.tab

0 B

FASTQ file (single-end)

fastqc

Directory

MOD706A20_S120_L004_R1_001_fastqc.zip

475.78 kB

MOD706A20_S120_L004_R1_001.fastq.gz

274.65 MB

stderr.txt

1.17 kB

Samtools idxstats

idxstat_report.txt

3.28 kB

Samtools idxstats

idxstat_report.txt

3.32 kB

Samtools idxstats

idxstat_report.txt

3.29 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A31_S37_L004_R1_001_preprocessed_downsampled.fastq.gz

61.85 MB

Samtools idxstats

idxstat_report.txt

3.27 kB

Samtools idxstats

idxstat_report.txt

3.28 kB

Samtools idxstats

idxstat_report.txt

3.28 kB

Samtools idxstats

idxstat_report.txt

3.28 kB

Samtools idxstats

idxstat_report.txt

3.28 kB

Samtools idxstats

idxstat_report.txt

3.28 kB

featureCounts

featureCounts_rc.txt.summary

356 B

MOD706A15_S5_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A15_S5_L004_R1_001_preprocessed_rc.tab.gz

212.65 kB

MOD706A15_S5_L004_R1_001_preprocessed_fpkm.tab.gz

319.81 kB

MOD706A15_S5_L004_R1_001_preprocessed_tpm.tab.gz

319.20 kB

MOD706A15_S5_L004_R1_001_preprocessed_expressions.txt.gz

864.69 kB

MOD706A15_S5_L004_R1_001_preprocessed_cpm.tab.gz

213.55 kB

STAR

MOD706A16_S8_L004_R1_001_preprocessed_downsampled.bam

6.01 MB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled.bam.bai

5.01 kB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled_SJ.out.tab

42.62 kB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

46.16 MB

STAR

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

58.24 MB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled.bam

1.74 kB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

STAR

MOD706A43_S119_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.30 MB

MOD706A43_S119_L004_R1_001_preprocessed_downsampled.bam.bai

5.52 kB

MOD706A43_S119_L004_R1_001_preprocessed_downsampled.bam

6.31 MB

MOD706A43_S119_L004_R1_001_preprocessed_downsampled_SJ.out.tab

58.50 kB

MOD706A43_S119_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.28 MB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.bam

2.03 kB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

featureCounts_rc.txt.summary

359 B

MOD706A43_S119_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.53 MB

MOD706A43_S119_L004_R1_001_preprocessed_rc.tab.gz

212.96 kB

MOD706A43_S119_L004_R1_001_preprocessed_fpkm.tab.gz

324.70 kB

MOD706A43_S119_L004_R1_001_preprocessed_cpm.tab.gz

212.64 kB

MOD706A43_S119_L004_R1_001_preprocessed_expressions.txt.gz

876.53 kB

MOD706A43_S119_L004_R1_001_preprocessed_tpm.tab.gz

324.13 kB

STAR

MOD706A46_S106_L004_R1_001_preprocessed_downsampled.bam.bai

4.91 kB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.59 MB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled.bam

6.15 MB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_SJ.out.tab

51.44 kB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

50.56 MB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled.bam

8.05 MB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_SJ.out.tab

55.32 kB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled.bam.bai

6.46 kB

featureCounts

MOD706A45_S10_L004_R1_001_preprocessed_fpkm.tab.gz

319.16 kB

MOD706A45_S10_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A45_S10_L004_R1_001_preprocessed_rc.tab.gz

211.44 kB

featureCounts_rc.txt.summary

357 B

MOD706A45_S10_L004_R1_001_preprocessed_tpm.tab.gz

319.07 kB

MOD706A45_S10_L004_R1_001_preprocessed_expressions.txt.gz

859.24 kB

MOD706A45_S10_L004_R1_001_preprocessed_cpm.tab.gz

208.29 kB

STAR

MOD706A22_S79_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.75 MB

MOD706A22_S79_L004_R1_001_preprocessed_downsampled.bam.bai

5.95 kB

MOD706A22_S79_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A22_S79_L004_R1_001_preprocessed_downsampled.bam

7.40 MB

MOD706A22_S79_L004_R1_001_preprocessed_downsampled_SJ.out.tab

49.69 kB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A48_S83_L004_R1_001_preprocessed_fpkm.tab.gz

304.64 kB

MOD706A48_S83_L004_R1_001_preprocessed_rc.tab.gz

207.38 kB

MOD706A48_S83_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A48_S83_L004_R1_001_preprocessed_tpm.tab.gz

304.47 kB

MOD706A48_S83_L004_R1_001_preprocessed_cpm.tab.gz

198.53 kB

MOD706A48_S83_L004_R1_001_preprocessed_expressions.txt.gz

812.31 kB

STAR

MOD706A44_S101_L004_R1_001_preprocessed_downsampled.bam

1.65 kB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.53 MB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A44_S101_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

featureCounts

MOD706A50_S24_L004_R1_001_preprocessed_rc.tab.gz

209.43 kB

MOD706A50_S24_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A50_S24_L004_R1_001_preprocessed_fpkm.tab.gz

308.12 kB

MOD706A50_S24_L004_R1_001_preprocessed_tpm.tab.gz

307.86 kB

MOD706A50_S24_L004_R1_001_preprocessed_expressions.txt.gz

829.55 kB

featureCounts_rc.txt.summary

357 B

MOD706A50_S24_L004_R1_001_preprocessed_cpm.tab.gz

203.42 kB

STAR

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.bam

7.48 MB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.11 MB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.bam.bai

6.20 kB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_SJ.out.tab

52.86 kB

STAR

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.00 MB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled.bam

1.62 kB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

STAR

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.34 MB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.bam

2.14 kB

STAR

MOD706A56_S131_L004_R1_001_preprocessed_downsampled.bam

5.33 kB

MOD706A56_S131_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A56_S131_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.25 kB

MOD706A56_S131_L004_R1_001_preprocessed_downsampled.bam.bai

280 B

MOD706A56_S131_L004_R1_001_preprocessed_downsampled_SJ.out.tab

108 B

featureCounts

featureCounts_rc.txt.summary

342 B

MOD706A56_S131_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.49 MB

MOD706A56_S131_L004_R1_001_preprocessed_rc.tab.gz

173.64 kB

MOD706A56_S131_L004_R1_001_preprocessed_fpkm.tab.gz

145.63 kB

MOD706A56_S131_L004_R1_001_preprocessed_tpm.tab.gz

145.61 kB

MOD706A56_S131_L004_R1_001_preprocessed_expressions.txt.gz

402.46 kB

MOD706A56_S131_L004_R1_001_preprocessed_cpm.tab.gz

143.88 kB

STAR

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.bam

6.90 MB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.bam.bai

5.79 kB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.38 MB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_SJ.out.tab

55.42 kB

STAR

MOD706A5_S17_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.57 MB

MOD706A5_S17_L004_R1_001_preprocessed_downsampled.bam.bai

5.87 kB

MOD706A5_S17_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A5_S17_L004_R1_001_preprocessed_downsampled.bam

7.54 MB

MOD706A5_S17_L004_R1_001_preprocessed_downsampled_SJ.out.tab

50.46 kB

featureCounts

MOD706A5_S17_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.53 MB

MOD706A5_S17_L004_R1_001_preprocessed_rc.tab.gz

216.39 kB

featureCounts_rc.txt.summary

357 B

MOD706A5_S17_L004_R1_001_preprocessed_tpm.tab.gz

335.03 kB

MOD706A5_S17_L004_R1_001_preprocessed_cpm.tab.gz

226.71 kB

MOD706A5_S17_L004_R1_001_preprocessed_fpkm.tab.gz

335.97 kB

MOD706A5_S17_L004_R1_001_preprocessed_expressions.txt.gz

913.63 kB

STAR

MOD706A9_S48_L004_R1_001_preprocessed_downsampled.bam.bai

4.65 kB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.69 MB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled.bam

6.29 MB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled_SJ.out.tab

44.68 kB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.09 MB

Samtools idxstats

idxstat_report.txt

3.29 kB

Samtools idxstats

idxstat_report.txt

3.25 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.19 MB

BBDuk (single-end)

fastqc

Directory

MOD706A24_S71_L004_R1_001_preprocessed_statistics.txt.gz

204 B

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed.fastq.gz

229.54 MB

BBDuk (single-end)

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed.fastq.gz

60.51 MB

fastqc

Directory

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_statistics.txt.gz

199 B

STAR

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

11.47 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed.bam.bai

3.25 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed.bam

345.66 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_SJ.out.tab

1.15 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_stats.txt

1.81 kB

Subsample FASTQ (single-end)

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.fastq.gz

59.66 MB

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed.fastq.gz

238.62 MB

MOD706A23_S46_L004_R1_001_preprocessed_statistics.txt.gz

206 B

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A38_S112_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.fastq.gz

61.86 MB

STAR

MOD706A49_S102_L004_R1_001_preprocessed_downsampled_SJ.out.tab

40.18 kB

MOD706A49_S102_L004_R1_001_preprocessed_downsampled.bam.bai

5.38 kB

MOD706A49_S102_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

52.04 MB

MOD706A49_S102_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A49_S102_L004_R1_001_preprocessed_downsampled.bam

7.20 MB

featureCounts

featureCounts_rc.txt.summary

379 B

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_featureCounts_rc.txt.gz

3.51 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_tpm.tab.gz

277.55 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_cpm.tab.gz

182.93 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_fpkm.tab.gz

277.47 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_expressions.txt.gz

734.68 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_rc.tab.gz

200.40 kB

FASTQ file (single-end)

stderr.txt

1.17 kB

fastqc

Directory

MOD706A49_S102_L004_R1_001.fastq.gz

273.52 MB

MOD706A49_S102_L004_R1_001_fastqc.zip

485.44 kB

FASTQ file (single-end)

MOD706A38_S112_L004_R1_001.fastq.gz

349.18 MB

fastqc

Directory

stderr.txt

1.17 kB

MOD706A38_S112_L004_R1_001_fastqc.zip

470.32 kB

FASTQ file (single-end)

stderr.txt

1.17 kB

fastqc

Directory

MOD706A44_S101_L004_R1_001.fastq.gz

227.66 MB

MOD706A44_S101_L004_R1_001_fastqc.zip

465.18 kB

FASTQ file (single-end)

MOD706A50_S24_L004_R1_001.fastq.gz

240.66 MB

fastqc

Directory

MOD706A50_S24_L004_R1_001_fastqc.zip

478.02 kB

stderr.txt

1.15 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A5_S17_L004_R1_001.fastq.gz

709.00 MB

stderr.txt

1.13 kB

MOD706A5_S17_L004_R1_001_fastqc.zip

464.64 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A46_S106_L004_R1_001.fastq.gz

332.92 MB

MOD706A46_S106_L004_R1_001_fastqc.zip

472.77 kB

FASTQ file (single-end)

MOD706A51_S54_L004_R1_001.fastq.gz

356.43 MB

fastqc

Directory

stderr.txt

1.15 kB

MOD706A51_S54_L004_R1_001_fastqc.zip

474.36 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A41_S7_L004_R1_001.fastq.gz

487.13 MB

stderr.txt

1.13 kB

MOD706A41_S7_L004_R1_001_fastqc.zip

475.88 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A16_S8_L004_R1_001.fastq.gz

147.65 MB

MOD706A16_S8_L004_R1_001_fastqc.zip

489.69 kB

stderr.txt

1.13 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A17_S72_L004_R1_001.fastq.gz

307.79 MB

stderr.txt

1.15 kB

MOD706A17_S72_L004_R1_001_fastqc.zip

477.38 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A21_S75_L004_R1_001.fastq.gz

226.08 MB

MOD706A21_S75_L004_R1_001_fastqc.zip

463.63 kB

stderr.txt

1.15 kB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

FASTQ file (single-end)

fastqc

Directory

MOD706A27_S85_L004_R1_001.fastq.gz

178.76 MB

stderr.txt

1.15 kB

MOD706A27_S85_L004_R1_001_fastqc.zip

466.20 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A13_S128_L004_R1_001.fastq.gz

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fastqc

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Directory

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FASTQ file (single-end)

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MultiQC

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STAR

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STAR

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Subsample FASTQ (single-end)

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Directory

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STAR

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355.66 MB

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STAR

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Subsample FASTQ (single-end)

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Directory

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STAR

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featureCounts

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3.52 MB

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2.70 MB

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3.82 MB

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STAR

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STAR

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STAR

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STAR

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3.32 MB

MOD706A33_S47_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.20 MB

MOD706A33_S47_L004_R1_001_preprocessed.bam

336.14 MB

MOD706A33_S47_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A33_S47_L004_R1_001_preprocessed.bw

6.57 MB

MOD706A33_S47_L004_R1_001_preprocessed_SJ.out.tab

1013.45 kB

STAR

MOD706A39_S21_L004_R1_001_preprocessed.bam.bai

3.35 MB

MOD706A39_S21_L004_R1_001_preprocessed.bam

334.88 MB

MOD706A39_S21_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

13.13 MB

MOD706A39_S21_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A39_S21_L004_R1_001_preprocessed.bw

6.66 MB

MOD706A39_S21_L004_R1_001_preprocessed_SJ.out.tab

940.91 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.fastq.gz

61.62 MB

STAR

MOD706A41_S7_L004_R1_001_preprocessed.bam.bai

3.44 MB

MOD706A41_S7_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.86 MB

MOD706A41_S7_L004_R1_001_preprocessed.bam

565.43 MB

MOD706A41_S7_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A41_S7_L004_R1_001_preprocessed_SJ.out.tab

1.15 MB

Subsample FASTQ (single-end)

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.fastq.gz

62.72 MB

fastqc

Directory

STAR

MOD706A46_S106_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.06 MB

MOD706A46_S106_L004_R1_001_preprocessed.bam.bai

3.32 MB

MOD706A46_S106_L004_R1_001_preprocessed.bam

395.86 MB

MOD706A46_S106_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A46_S106_L004_R1_001_preprocessed_SJ.out.tab

1.14 MB

MOD706A46_S106_L004_R1_001_preprocessed.bw

8.26 MB

STAR

MOD706A42_S58_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.82 MB

MOD706A42_S58_L004_R1_001_preprocessed.bam

303.93 MB

MOD706A42_S58_L004_R1_001_preprocessed_SJ.out.tab

932.36 kB

MOD706A42_S58_L004_R1_001_preprocessed.bam.bai

3.13 MB

MOD706A42_S58_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A42_S58_L004_R1_001_preprocessed.bw

5.76 MB

STAR

MOD706A45_S10_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.64 MB

MOD706A45_S10_L004_R1_001_preprocessed.bam

358.62 MB

MOD706A45_S10_L004_R1_001_preprocessed.bam.bai

3.31 MB

MOD706A45_S10_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A45_S10_L004_R1_001_preprocessed.bw

7.85 MB

MOD706A45_S10_L004_R1_001_preprocessed_SJ.out.tab

1.10 MB

STAR

MOD706A48_S83_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.18 MB

MOD706A48_S83_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A48_S83_L004_R1_001_preprocessed.bam.bai

3.27 MB

MOD706A48_S83_L004_R1_001_preprocessed.bam

239.39 MB

MOD706A48_S83_L004_R1_001_preprocessed_SJ.out.tab

913.26 kB

MOD706A48_S83_L004_R1_001_preprocessed.bw

6.48 MB

STAR

MOD706A44_S101_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.81 MB

MOD706A44_S101_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A44_S101_L004_R1_001_preprocessed.bam

266.27 MB

MOD706A44_S101_L004_R1_001_preprocessed.bw

6.64 MB

MOD706A44_S101_L004_R1_001_preprocessed_SJ.out.tab

921.84 kB

MOD706A44_S101_L004_R1_001_preprocessed.bam.bai

3.24 MB

STAR

MOD706A50_S24_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.97 MB

MOD706A50_S24_L004_R1_001_preprocessed.bam.bai

3.12 MB

MOD706A50_S24_L004_R1_001_preprocessed.bam

264.85 MB

MOD706A50_S24_L004_R1_001_preprocessed_SJ.out.tab

947.59 kB

MOD706A50_S24_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A50_S24_L004_R1_001_preprocessed.bw

5.42 MB

STAR

MOD706A47_S65_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.14 MB

MOD706A47_S65_L004_R1_001_preprocessed.bam.bai

3.30 MB

MOD706A47_S65_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A47_S65_L004_R1_001_preprocessed.bam

299.03 MB

MOD706A47_S65_L004_R1_001_preprocessed_SJ.out.tab

1.02 MB

MOD706A47_S65_L004_R1_001_preprocessed.bw

7.27 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.fastq.gz

59.97 MB

STAR

MOD706A52_S45_L004_R1_001_preprocessed.bam.bai

3.14 MB

MOD706A52_S45_L004_R1_001_preprocessed.bam

269.59 MB

MOD706A52_S45_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A52_S45_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.59 MB

MOD706A52_S45_L004_R1_001_preprocessed_SJ.out.tab

916.13 kB

MOD706A52_S45_L004_R1_001_preprocessed.bw

5.86 MB

STAR

MOD706A54_S1_L004_R1_001_preprocessed.bam

314.18 MB

MOD706A54_S1_L004_R1_001_preprocessed.bam.bai

3.20 MB

MOD706A54_S1_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A54_S1_L004_R1_001_preprocessed_SJ.out.tab

1.02 MB

MOD706A54_S1_L004_R1_001_preprocessed.bw

6.87 MB

MOD706A54_S1_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.89 MB

STAR

MOD706A56_S131_L004_R1_001_preprocessed.bam.bai

1.18 MB

MOD706A56_S131_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.76 kB

MOD706A56_S131_L004_R1_001_preprocessed_stats.txt

1.77 kB

MOD706A56_S131_L004_R1_001_preprocessed.bam

59.18 kB

MOD706A56_S131_L004_R1_001_preprocessed_SJ.out.tab

1.54 kB

MOD706A56_S131_L004_R1_001_preprocessed.bw

17.29 kB

STAR

MOD706A51_S54_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.93 MB

MOD706A51_S54_L004_R1_001_preprocessed.bam.bai

3.21 MB

MOD706A51_S54_L004_R1_001_preprocessed.bam

387.92 MB

MOD706A51_S54_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A51_S54_L004_R1_001_preprocessed_SJ.out.tab

1.05 MB

STAR

MOD706A53_S73_L004_R1_001_preprocessed.bam.bai

3.17 MB

MOD706A53_S73_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.11 MB

MOD706A53_S73_L004_R1_001_preprocessed_SJ.out.tab

1.01 MB

MOD706A53_S73_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A53_S73_L004_R1_001_preprocessed.bam

285.48 MB

STAR

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.bam.bai

5.51 kB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.19 MB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.bam

6.69 MB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_SJ.out.tab

52.85 kB

STAR

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.18 MB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.bam.bai

6.29 kB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.bam

7.70 MB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_SJ.out.tab

53.08 kB

STAR

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.bam

1.43 kB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.70 MB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

MOD706A20_S120_L004_R1_001_preprocessed_rc.tab.gz

209.77 kB

featureCounts_rc.txt.summary

358 B

MOD706A20_S120_L004_R1_001_preprocessed_tpm.tab.gz

310.53 kB

MOD706A20_S120_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A20_S120_L004_R1_001_preprocessed_fpkm.tab.gz

310.71 kB

MOD706A20_S120_L004_R1_001_preprocessed_expressions.txt.gz

836.71 kB

MOD706A20_S120_L004_R1_001_preprocessed_cpm.tab.gz

204.64 kB

featureCounts

MOD706A18_S121_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A18_S121_L004_R1_001_preprocessed_rc.tab.gz

208.71 kB

featureCounts_rc.txt.summary

358 B

MOD706A18_S121_L004_R1_001_preprocessed_fpkm.tab.gz

303.14 kB

MOD706A18_S121_L004_R1_001_preprocessed_cpm.tab.gz

202.07 kB

MOD706A18_S121_L004_R1_001_preprocessed_expressions.txt.gz

817.16 kB

MOD706A18_S121_L004_R1_001_preprocessed_tpm.tab.gz

302.79 kB

STAR

MOD706A18_S121_L004_R1_001_preprocessed_downsampled.bam.bai

4.70 kB

MOD706A18_S121_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.13 MB

MOD706A18_S121_L004_R1_001_preprocessed_downsampled.bam

6.35 MB

MOD706A18_S121_L004_R1_001_preprocessed_downsampled_SJ.out.tab

39.47 kB

MOD706A18_S121_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

MOD706A5_S17_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

25.91 MB

MOD706A5_S17_L004_R1_001_preprocessed.bam.bai

3.46 MB

MOD706A5_S17_L004_R1_001_preprocessed.bam

830.38 MB

MOD706A5_S17_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A5_S17_L004_R1_001_preprocessed_SJ.out.tab

1.83 MB

STAR

MOD706A9_S48_L004_R1_001_preprocessed.bam

862.88 MB

MOD706A9_S48_L004_R1_001_preprocessed_stats.txt

1.82 kB

MOD706A9_S48_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

20.19 MB

MOD706A9_S48_L004_R1_001_preprocessed.bam.bai

3.46 MB

MOD706A9_S48_L004_R1_001_preprocessed_SJ.out.tab

1.64 MB

STAR

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.47 MB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.bam

1.79 kB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

STAR

MOD706A18_S121_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.77 MB

MOD706A18_S121_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A18_S121_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A18_S121_L004_R1_001_preprocessed_downsampled.bam

1.69 kB

MOD706A18_S121_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

featureCounts_rc.txt.summary

358 B

MOD706A10_S109_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A10_S109_L004_R1_001_preprocessed_rc.tab.gz

210.97 kB

MOD706A10_S109_L004_R1_001_preprocessed_fpkm.tab.gz

314.58 kB

MOD706A10_S109_L004_R1_001_preprocessed_expressions.txt.gz

849.04 kB

MOD706A10_S109_L004_R1_001_preprocessed_cpm.tab.gz

208.27 kB

MOD706A10_S109_L004_R1_001_preprocessed_tpm.tab.gz

314.44 kB

STAR

MOD706A19_S105_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.61 MB

MOD706A19_S105_L004_R1_001_preprocessed_downsampled.bam.bai

6.52 kB

MOD706A19_S105_L004_R1_001_preprocessed_downsampled_SJ.out.tab

52.17 kB

MOD706A19_S105_L004_R1_001_preprocessed_downsampled.bam

7.84 MB

MOD706A19_S105_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.02 MB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_SJ.out.tab

42.71 kB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled.bam.bai

4.37 kB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled.bam

6.22 MB

STAR

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.62 MB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled.bam.bai

5.40 kB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled.bam

6.85 MB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_SJ.out.tab

53.32 kB

featureCounts

featureCounts_rc.txt.summary

358 B

MOD706A12_S68_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.53 MB

MOD706A12_S68_L004_R1_001_preprocessed_tpm.tab.gz

331.23 kB

MOD706A12_S68_L004_R1_001_preprocessed_cpm.tab.gz

224.45 kB

MOD706A12_S68_L004_R1_001_preprocessed_fpkm.tab.gz

331.92 kB

MOD706A12_S68_L004_R1_001_preprocessed_expressions.txt.gz

904.40 kB

MOD706A12_S68_L004_R1_001_preprocessed_rc.tab.gz

215.88 kB

featureCounts

MOD706A19_S105_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A19_S105_L004_R1_001_preprocessed_rc.tab.gz

208.30 kB

MOD706A19_S105_L004_R1_001_preprocessed_tpm.tab.gz

305.74 kB

MOD706A19_S105_L004_R1_001_preprocessed_fpkm.tab.gz

305.63 kB

MOD706A19_S105_L004_R1_001_preprocessed_cpm.tab.gz

197.24 kB

featureCounts_rc.txt.summary

358 B

MOD706A19_S105_L004_R1_001_preprocessed_expressions.txt.gz

818.21 kB

STAR

MOD706A12_S68_L004_R1_001_preprocessed_downsampled.bam

1.40 kB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.53 MB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_SJ.out.tab

41 B

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

STAR

MOD706A25_S66_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.56 MB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A25_S66_L004_R1_001_preprocessed_downsampled.bam

1.50 kB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

STAR

MOD706A19_S105_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.97 MB

MOD706A19_S105_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A19_S105_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A19_S105_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A19_S105_L004_R1_001_preprocessed_downsampled.bam

1.53 kB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A25_S66_L004_R1_001_preprocessed_fpkm.tab.gz

300.13 kB

MOD706A25_S66_L004_R1_001_preprocessed_rc.tab.gz

207.44 kB

MOD706A25_S66_L004_R1_001_preprocessed_cpm.tab.gz

198.71 kB

MOD706A25_S66_L004_R1_001_preprocessed_expressions.txt.gz

805.88 kB

MOD706A25_S66_L004_R1_001_preprocessed_tpm.tab.gz

300.14 kB

MOD706A25_S66_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

STAR

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.06 MB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled.bam

6.50 MB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled.bam.bai

5.18 kB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_SJ.out.tab

56.93 kB

STAR

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.43 MB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled.bam

1.17 kB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

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357 B

MOD706A22_S79_L004_R1_001_preprocessed_rc.tab.gz

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MOD706A22_S79_L004_R1_001_preprocessed_cpm.tab.gz

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MOD706A22_S79_L004_R1_001_preprocessed_tpm.tab.gz

304.41 kB

MOD706A22_S79_L004_R1_001_preprocessed_fpkm.tab.gz

304.69 kB

MOD706A22_S79_L004_R1_001_preprocessed_expressions.txt.gz

814.30 kB

MOD706A22_S79_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A23_S46_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A23_S46_L004_R1_001_preprocessed_rc.tab.gz

210.25 kB

MOD706A23_S46_L004_R1_001_preprocessed_fpkm.tab.gz

313.95 kB

MOD706A23_S46_L004_R1_001_preprocessed_tpm.tab.gz

313.43 kB

MOD706A23_S46_L004_R1_001_preprocessed_expressions.txt.gz

843.04 kB

MOD706A23_S46_L004_R1_001_preprocessed_cpm.tab.gz

206.99 kB

STAR

MOD706A22_S79_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A22_S79_L004_R1_001_preprocessed_downsampled.bam.bai

272 B

MOD706A22_S79_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.98 MB

MOD706A22_S79_L004_R1_001_preprocessed_downsampled.bam

1.86 kB

MOD706A22_S79_L004_R1_001_preprocessed_downsampled_SJ.out.tab

81 B

STAR

MOD706A23_S46_L004_R1_001_preprocessed_downsampled.bam.bai

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MOD706A23_S46_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.30 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled.bam

7.25 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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featureCounts

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QoRTs QC

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Directory

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54.71 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_SJ.out.tab

46.32 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A24_S71_L004_R1_001_preprocessed_downsampled.bam

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MOD706A24_S71_L004_R1_001_preprocessed_downsampled_stats.txt

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MOD706A21_S75_L004_R1_001_preprocessed_downsampled.bam

7.68 MB

MOD706A21_S75_L004_R1_001_preprocessed_downsampled.bam.bai

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STAR

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MOD706A32_S88_L004_R1_001_preprocessed_downsampled.bam

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STAR

MOD706A32_S88_L004_R1_001_preprocessed_downsampled.bam.bai

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MOD706A32_S88_L004_R1_001_preprocessed_downsampled.bam

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MOD706A32_S88_L004_R1_001_preprocessed_downsampled_stats.txt

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featureCounts

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MOD706A28_S104_L004_R1_001_preprocessed_downsampled.bam

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featureCounts

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MOD706A32_S88_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

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MultiQC

multiqc_report.html

1.19 MB

multiqc_data

Directory

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MultiQC

multiqc_data

Directory

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STAR

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MOD706A28_S104_L004_R1_001_preprocessed_downsampled.bam

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MOD706A28_S104_L004_R1_001_preprocessed_downsampled.bam.bai

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STAR

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STAR

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MOD706A29_S125_L004_R1_001_preprocessed_downsampled.bam

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MOD706A35_S27_L004_R1_001_preprocessed_downsampled.bam.bai

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featureCounts

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357 B

MOD706A30_S32_L004_R1_001_preprocessed_rc.tab.gz

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3.52 MB

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STAR

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60.08 MB

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featureCounts

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3.52 MB

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featureCounts

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3.52 MB

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358 B

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Samtools idxstats

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MOD706A36_S115_L004_R1_001_preprocessed_downsampled.bam

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6.89 MB

Samtools idxstats

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STAR

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STAR

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MOD706A38_S112_L004_R1_001_preprocessed_downsampled.bam

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MOD706A38_S112_L004_R1_001_preprocessed_downsampled_stats.txt

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MOD706A40_S99_L004_R1_001_preprocessed_downsampled.bam

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STAR

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MOD706A38_S112_L004_R1_001_preprocessed_downsampled.bam

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MOD706A38_S112_L004_R1_001_preprocessed_downsampled_stats.txt

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featureCounts

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STAR

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MOD706A40_S99_L004_R1_001_preprocessed_downsampled_stats.txt

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featureCounts

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MOD706A40_S99_L004_R1_001_preprocessed_rc.tab.gz

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featureCounts

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featureCounts_rc.txt.summary

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MOD706A33_S47_L004_R1_001_preprocessed_tpm.tab.gz

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featureCounts

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204.64 kB

MOD706A39_S21_L004_R1_001_preprocessed_rc.tab.gz

209.51 kB

MOD706A39_S21_L004_R1_001_preprocessed_fpkm.tab.gz

309.98 kB

featureCounts_rc.txt.summary

357 B

MOD706A39_S21_L004_R1_001_preprocessed_tpm.tab.gz

309.62 kB

MOD706A39_S21_L004_R1_001_preprocessed_expressions.txt.gz

831.37 kB

MOD706A39_S21_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A34_S80_L004_R1_001_preprocessed_rc.tab.gz

209.94 kB

MOD706A34_S80_L004_R1_001_preprocessed_tpm.tab.gz

311.56 kB

MOD706A34_S80_L004_R1_001_preprocessed_fpkm.tab.gz

311.49 kB

MOD706A34_S80_L004_R1_001_preprocessed_cpm.tab.gz

204.00 kB

MOD706A34_S80_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A34_S80_L004_R1_001_preprocessed_expressions.txt.gz

839.04 kB

STAR

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

51.96 MB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.bam.bai

3.88 kB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.bam

5.64 MB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

50.69 kB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

MOD706A34_S80_L004_R1_001_preprocessed_downsampled.bam.bai

5.40 kB

MOD706A34_S80_L004_R1_001_preprocessed_downsampled_SJ.out.tab

56.55 kB

MOD706A34_S80_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.25 MB

MOD706A34_S80_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A34_S80_L004_R1_001_preprocessed_downsampled.bam

6.28 MB

STAR

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.bam

2.75 kB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.82 MB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

STAR

MOD706A39_S21_L004_R1_001_preprocessed_downsampled.bam.bai

7.60 kB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled.bam

8.41 MB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

51.65 MB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_SJ.out.tab

56.51 kB

STAR

MOD706A43_S119_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A43_S119_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.23 MB

MOD706A43_S119_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A43_S119_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A43_S119_L004_R1_001_preprocessed_downsampled.bam

1.40 kB

STAR

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.bam.bai

4.30 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.87 MB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_SJ.out.tab

46.04 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.bam

5.68 MB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A41_S7_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.53 MB

MOD706A41_S7_L004_R1_001_preprocessed_tpm.tab.gz

324.42 kB

MOD706A41_S7_L004_R1_001_preprocessed_cpm.tab.gz

220.35 kB

MOD706A41_S7_L004_R1_001_preprocessed_rc.tab.gz

214.57 kB

MOD706A41_S7_L004_R1_001_preprocessed_fpkm.tab.gz

324.89 kB

MOD706A41_S7_L004_R1_001_preprocessed_expressions.txt.gz

883.73 kB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A42_S58_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A42_S58_L004_R1_001_preprocessed_fpkm.tab.gz

309.47 kB

MOD706A42_S58_L004_R1_001_preprocessed_tpm.tab.gz

309.26 kB

MOD706A42_S58_L004_R1_001_preprocessed_expressions.txt.gz

834.58 kB

MOD706A42_S58_L004_R1_001_preprocessed_rc.tab.gz

209.95 kB

MOD706A42_S58_L004_R1_001_preprocessed_cpm.tab.gz

206.18 kB

STAR

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.99 MB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.bam

1.31 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

STAR

MOD706A46_S106_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A46_S106_L004_R1_001_preprocessed_downsampled.bam

1.42 kB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.49 MB

STAR

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.bam

6.24 MB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.bam.bai

5.20 kB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.50 MB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_SJ.out.tab

58.80 kB

STAR

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.bam

1.74 kB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.37 MB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

MOD706A46_S106_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A46_S106_L004_R1_001_preprocessed_fpkm.tab.gz

316.86 kB

featureCounts_rc.txt.summary

358 B

MOD706A46_S106_L004_R1_001_preprocessed_rc.tab.gz

211.09 kB

MOD706A46_S106_L004_R1_001_preprocessed_expressions.txt.gz

851.55 kB

MOD706A46_S106_L004_R1_001_preprocessed_cpm.tab.gz

208.27 kB

MOD706A46_S106_L004_R1_001_preprocessed_tpm.tab.gz

316.50 kB

STAR

MOD706A48_S83_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.31 MB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled.bam

2.84 kB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

STAR

MOD706A44_S101_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.87 MB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled.bam.bai

5.12 kB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled.bam

6.02 MB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled_SJ.out.tab

60.57 kB

featureCounts

featureCounts_rc.txt.summary

358 B

MOD706A44_S101_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A44_S101_L004_R1_001_preprocessed_fpkm.tab.gz

312.19 kB

MOD706A44_S101_L004_R1_001_preprocessed_rc.tab.gz

209.29 kB

MOD706A44_S101_L004_R1_001_preprocessed_tpm.tab.gz

311.87 kB

MOD706A44_S101_L004_R1_001_preprocessed_cpm.tab.gz

201.58 kB

MOD706A44_S101_L004_R1_001_preprocessed_expressions.txt.gz

835.01 kB

STAR

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

52.55 MB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled.bam.bai

5.16 kB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled.bam

7.02 MB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_SJ.out.tab

40.68 kB

STAR

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.03 MB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled.bam

9.37 MB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_SJ.out.tab

62.06 kB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled.bam.bai

8.10 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A18_S121_L004_R1_001.fastq.gz

223.39 MB

MOD706A18_S121_L004_R1_001_fastqc.zip

470.88 kB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A47_S65_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A47_S65_L004_R1_001_preprocessed_rc.tab.gz

208.97 kB

MOD706A47_S65_L004_R1_001_preprocessed_fpkm.tab.gz

310.23 kB

MOD706A47_S65_L004_R1_001_preprocessed_cpm.tab.gz

201.72 kB

MOD706A47_S65_L004_R1_001_preprocessed_expressions.txt.gz

829.73 kB

MOD706A47_S65_L004_R1_001_preprocessed_tpm.tab.gz

309.76 kB

STAR

MOD706A52_S45_L004_R1_001_preprocessed_downsampled.bam

1.61 kB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.30 MB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

STAR

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.85 MB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.bam

7.18 MB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.bam.bai

6.24 kB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_SJ.out.tab

59.33 kB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

featureCounts

featureCounts_rc.txt.summary

356 B

MOD706A54_S1_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A54_S1_L004_R1_001_preprocessed_rc.tab.gz

210.15 kB

MOD706A54_S1_L004_R1_001_preprocessed_fpkm.tab.gz

312.28 kB

MOD706A54_S1_L004_R1_001_preprocessed_tpm.tab.gz

311.98 kB

MOD706A54_S1_L004_R1_001_preprocessed_cpm.tab.gz

204.19 kB

MOD706A54_S1_L004_R1_001_preprocessed_expressions.txt.gz

839.26 kB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A52_S45_L004_R1_001_preprocessed_fpkm.tab.gz

305.39 kB

MOD706A52_S45_L004_R1_001_preprocessed_rc.tab.gz

208.46 kB

MOD706A52_S45_L004_R1_001_preprocessed_cpm.tab.gz

200.78 kB

MOD706A52_S45_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A52_S45_L004_R1_001_preprocessed_tpm.tab.gz

305.40 kB

MOD706A52_S45_L004_R1_001_preprocessed_expressions.txt.gz

820.00 kB

QoRTs QC

qorts_report.zip

6.80 MB

qorts_output

Directory

STAR

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.65 MB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.bam

1.78 kB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

STAR

MOD706A51_S54_L004_R1_001_preprocessed_downsampled.bam

6.74 MB

MOD706A51_S54_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A51_S54_L004_R1_001_preprocessed_downsampled.bam.bai

4.99 kB

MOD706A51_S54_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.91 MB

MOD706A51_S54_L004_R1_001_preprocessed_downsampled_SJ.out.tab

41.32 kB

STAR

MOD706A56_S131_L004_R1_001_preprocessed_downsampled.bam

442 B

MOD706A56_S131_L004_R1_001_preprocessed_downsampled.bam.bai

56 B

MOD706A56_S131_L004_R1_001_preprocessed_downsampled_stats.txt

1.76 kB

MOD706A56_S131_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A56_S131_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.22 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.19 MB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A51_S54_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A51_S54_L004_R1_001_preprocessed_rc.tab.gz

212.03 kB

MOD706A51_S54_L004_R1_001_preprocessed_fpkm.tab.gz

314.84 kB

MOD706A51_S54_L004_R1_001_preprocessed_expressions.txt.gz

855.94 kB

MOD706A51_S54_L004_R1_001_preprocessed_cpm.tab.gz

212.35 kB

MOD706A51_S54_L004_R1_001_preprocessed_tpm.tab.gz

314.57 kB

featureCounts

featureCounts_rc.txt.summary

358 B

MOD706A9_S48_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.53 MB

MOD706A9_S48_L004_R1_001_preprocessed_tpm.tab.gz

332.71 kB

MOD706A9_S48_L004_R1_001_preprocessed_rc.tab.gz

217.32 kB

MOD706A9_S48_L004_R1_001_preprocessed_fpkm.tab.gz

333.43 kB

MOD706A9_S48_L004_R1_001_preprocessed_expressions.txt.gz

913.96 kB

MOD706A9_S48_L004_R1_001_preprocessed_cpm.tab.gz

231.80 kB

featureCounts

MOD706A53_S73_L004_R1_001_preprocessed_rc.tab.gz

209.09 kB

MOD706A53_S73_L004_R1_001_preprocessed_fpkm.tab.gz

310.99 kB

MOD706A53_S73_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

featureCounts_rc.txt.summary

357 B

MOD706A53_S73_L004_R1_001_preprocessed_tpm.tab.gz

310.68 kB

MOD706A53_S73_L004_R1_001_preprocessed_cpm.tab.gz

202.14 kB

MOD706A53_S73_L004_R1_001_preprocessed_expressions.txt.gz

831.89 kB

STAR

MOD706A5_S17_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A5_S17_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A5_S17_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.00 MB

MOD706A5_S17_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A5_S17_L004_R1_001_preprocessed_downsampled.bam

1.23 kB

STAR

MOD706A9_S48_L004_R1_001_preprocessed_downsampled.bam

1.78 kB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.16 MB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A9_S48_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

Samtools idxstats

idxstat_report.txt

3.30 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A49_S102_L004_R1_001_preprocessed_downsampled.fastq.gz

59.02 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.26 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled.fastq.gz

59.65 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.31 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled.fastq.gz

60.39 MB

Samtools idxstats

idxstat_report.txt

3.29 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.19 MB

Samtools idxstats

idxstat_report.txt

3.25 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

6.83 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.31 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.19 MB

Samtools idxstats

idxstat_report.txt

3.25 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

6.80 MB

Subsample FASTQ (single-end)

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.fastq.gz

61.14 MB

fastqc

Directory

QoRTs QC

qorts_report.zip

6.85 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.19 MB

QoRTs QC

qorts_report.zip

7.33 MB

qorts_output

Directory

Subsample FASTQ (single-end)

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled.fastq.gz

61.13 MB

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

MOD706A49_S102_L004_R1_001_preprocessed.fastq.gz

211.53 MB

MOD706A49_S102_L004_R1_001_statistics.txt.gz

449 B

STAR

MOD706A49_S102_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.18 MB

MOD706A49_S102_L004_R1_001_preprocessed.bam

306.04 MB

MOD706A49_S102_L004_R1_001_preprocessed.bam.bai

3.03 MB

MOD706A49_S102_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A49_S102_L004_R1_001_preprocessed_SJ.out.tab

1.04 MB

BBDuk (single-end)

fastqc

Directory

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed.fastq.gz

150.77 MB

MOD706A35_S27_L004_R1_001_preprocessed_statistics.txt.gz

203 B

BBDuk (single-end)

fastqc

Directory

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed.fastq.gz

59.76 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_statistics.txt.gz

200 B

BBDuk (single-end)

fastqc

Directory

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_statistics.txt.gz

197 B

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed.fastq.gz

61.25 MB

BBDuk (single-end)

fastqc

Directory

MOD706A8_S52_L004_R1_001_preprocessed.fastq.gz

676.06 MB

MOD706A8_S52_L004_R1_001_statistics.txt.gz

479 B

Samtools idxstats

idxstat_report.txt

3.29 kB

STAR

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed.bam.bai

3.26 MB

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featureCounts

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Samtools idxstats

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QoRTs QC

qorts_output

Directory

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MultiQC

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Directory

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QoRTs QC

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193.95 MB

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FASTQ file (single-end)

fastqc

Directory

MOD706A9_S48_L004_R1_001_fastqc.zip

468.32 kB

MOD706A9_S48_L004_R1_001.fastq.gz

765.54 MB

stderr.txt

1.13 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A15_S5_L004_R1_001.fastq.gz

429.41 MB

stderr.txt

1.13 kB

MOD706A15_S5_L004_R1_001_fastqc.zip

467.85 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A40_S99_L004_R1_001.fastq.gz

135.64 MB

stderr.txt

1.15 kB

MOD706A40_S99_L004_R1_001_fastqc.zip

473.57 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A45_S10_L004_R1_001_fastqc.zip

468.35 kB

MOD706A45_S10_L004_R1_001.fastq.gz

310.52 MB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A12_S68_L004_R1_001.fastq.gz

597.02 MB

MOD706A12_S68_L004_R1_001_fastqc.zip

465.22 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A39_S21_L004_R1_001.fastq.gz

289.25 MB

stderr.txt

1.15 kB

MOD706A39_S21_L004_R1_001_fastqc.zip

477.08 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A14_S92_L004_R1_001.fastq.gz

189.76 MB

MOD706A14_S92_L004_R1_001_fastqc.zip

470.91 kB

stderr.txt

1.15 kB

FASTQ file (single-end)

MOD706A47_S65_L004_R1_001.fastq.gz

256.56 MB

stderr.txt

1.15 kB

fastqc

Directory

MOD706A47_S65_L004_R1_001_fastqc.zip

470.64 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A56_S131_L004_R1_001.fastq.gz

59.54 kB

MOD706A56_S131_L004_R1_001_fastqc.zip

483.26 kB

stderr.txt

56 B

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.13 kB

MOD706A1_S93_L004_R1_001.fastq.gz

1.24 GB

MOD706A1_S93_L004_R1_001_fastqc.zip

462.46 kB

FASTQ file (single-end)

MOD706A23_S46_L004_R1_001.fastq.gz

316.88 MB

fastqc

Directory

stderr.txt

1.15 kB

MOD706A23_S46_L004_R1_001_fastqc.zip

473.41 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A22_S79_L004_R1_001.fastq.gz

226.94 MB

stderr.txt

1.15 kB

MOD706A22_S79_L004_R1_001_fastqc.zip

472.39 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A25_S66_L004_R1_001.fastq.gz

183.09 MB

MOD706A25_S66_L004_R1_001_fastqc.zip

480.73 kB

stderr.txt

1.15 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A29_S125_L004_R1_001_fastqc.zip

474.02 kB

MOD706A29_S125_L004_R1_001.fastq.gz

279.23 MB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A30_S32_L004_R1_001.fastq.gz

152.91 MB

MOD706A30_S32_L004_R1_001_fastqc.zip

472.81 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A31_S37_L004_R1_001.fastq.gz

228.76 MB

MOD706A31_S37_L004_R1_001_fastqc.zip

465.57 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A32_S88_L004_R1_001_fastqc.zip

469.19 kB

MOD706A32_S88_L004_R1_001.fastq.gz

271.39 MB

FASTQ file (single-end)

MOD706A33_S47_L004_R1_001.fastq.gz

296.87 MB

MOD706A33_S47_L004_R1_001_fastqc.zip

468.94 kB

fastqc

Directory

stderr.txt

1.15 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A11_S108_L004_R1_001_fastqc.zip

473.23 kB

stderr.txt

1.17 kB

MOD706A11_S108_L004_R1_001.fastq.gz

206.97 MB

FASTQ file (single-end)

fastqc

Directory

MOD706A24_S71_L004_R1_001_fastqc.zip

465.44 kB

MOD706A24_S71_L004_R1_001.fastq.gz

293.52 MB

stderr.txt

1.15 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A34_S80_L004_R1_001.fastq.gz

262.73 MB

MOD706A34_S80_L004_R1_001_fastqc.zip

470.31 kB

Samtools idxstats

idxstat_report.txt

3.29 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A37_S124_L004_R1_001.fastq.gz

343.86 MB

MOD706A37_S124_L004_R1_001_fastqc.zip

464.15 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A43_S119_L004_R1_001.fastq.gz

377.20 MB

MOD706A43_S119_L004_R1_001_fastqc.zip

459.11 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A48_S83_L004_R1_001.fastq.gz

207.65 MB

MOD706A48_S83_L004_R1_001_fastqc.zip

478.08 kB

stderr.txt

1.15 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A52_S45_L004_R1_001.fastq.gz

232.38 MB

MOD706A52_S45_L004_R1_001_fastqc.zip

479.05 kB

stderr.txt

1.15 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A53_S73_L004_R1_001_fastqc.zip

474.42 kB

MOD706A53_S73_L004_R1_001.fastq.gz

237.86 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A15_S5_L004_R1_001_preprocessed_downsampled.fastq.gz

62.54 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A16_S8_L004_R1_001_preprocessed_downsampled.fastq.gz

51.67 MB

Samtools idxstats

idxstat_report.txt

3.26 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.fastq.gz

62.04 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.fastq.gz

61.82 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.34 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_report.zip

7.31 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.18 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A28_S104_L004_R1_001_preprocessed_downsampled.fastq.gz

62.81 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.34 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.26 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A27_S85_L004_R1_001_preprocessed_downsampled.fastq.gz

60.74 MB

Samtools idxstats

idxstat_report.txt

3.27 kB

QoRTs QC

qorts_report.zip

7.09 MB

qorts_output

Directory

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A30_S32_L004_R1_001_preprocessed_downsampled.fastq.gz

62.35 MB

STAR

MOD706A30_S32_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A30_S32_L004_R1_001_preprocessed_downsampled.bam

1.49 kB

MOD706A30_S32_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.99 MB

MOD706A30_S32_L004_R1_001_preprocessed_downsampled_SJ.out.tab

80 B

MOD706A30_S32_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

Samtools idxstats

idxstat_report.txt

3.29 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A32_S88_L004_R1_001_preprocessed_downsampled.fastq.gz

59.03 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

QoRTs QC

qorts_report.zip

7.29 MB

qorts_output

Directory

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.fastq.gz

57.15 MB

QoRTs QC

qorts_report.zip

7.29 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

7.09 MB

qorts_output

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A43_S119_L004_R1_001_preprocessed_downsampled.fastq.gz

60.55 MB

QoRTs QC

qorts_report.zip

7.48 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.fastq.gz

60.33 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.24 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_report.zip

7.29 MB

qorts_output

Directory

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A44_S101_L004_R1_001_preprocessed_downsampled.fastq.gz

61.87 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A50_S24_L004_R1_001_preprocessed_downsampled.fastq.gz

59.32 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_report.zip

7.13 MB

qorts_output

Directory

Subsample FASTQ (single-end)

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.fastq.gz

59.67 MB

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A51_S54_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A51_S54_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.17 MB

MOD706A51_S54_L004_R1_001_preprocessed_downsampled.bam

1.34 kB

MOD706A51_S54_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A51_S54_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.35 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.fastq.gz

62.14 MB

STAR

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.bam

1.49 kB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.79 MB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

3.28 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A5_S17_L004_R1_001_preprocessed_downsampled.fastq.gz

63.35 MB

QoRTs QC

qorts_report.zip

7.81 MB

qorts_output

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A9_S48_L004_R1_001_preprocessed_downsampled.fastq.gz

61.51 MB

Samtools idxstats

idxstat_report.txt

3.30 kB

QoRTs QC

qorts_report.zip

7.81 MB

qorts_output

Directory

BBDuk (single-end)

MOD706A43_S119_L004_R1_001_statistics.txt.gz

449 B

fastqc

Directory

MOD706A43_S119_L004_R1_001_preprocessed.fastq.gz

294.95 MB

BBDuk (single-end)

fastqc

Directory

MOD706A10_S109_L004_R1_001_statistics.txt.gz

453 B

MOD706A10_S109_L004_R1_001_preprocessed.fastq.gz

245.37 MB

BBDuk (single-end)

fastqc

Directory

MOD706A12_S68_L004_R1_001_statistics.txt.gz

475 B

MOD706A12_S68_L004_R1_001_preprocessed.fastq.gz

470.10 MB

BBDuk (single-end)

fastqc

Directory

MOD706A19_S105_L004_R1_001_preprocessed.fastq.gz

171.37 MB

MOD706A19_S105_L004_R1_001_statistics.txt.gz

424 B

BBDuk (single-end)

fastqc

Directory

MOD706A18_S121_L004_R1_001_statistics.txt.gz

429 B

MOD706A18_S121_L004_R1_001_preprocessed.fastq.gz

178.02 MB

BBDuk (single-end)

fastqc

Directory

MOD706A23_S46_L004_R1_001_statistics.txt.gz

477 B

MOD706A23_S46_L004_R1_001_preprocessed.fastq.gz

238.49 MB

BBDuk (single-end)

fastqc

Directory

MOD706A25_S66_L004_R1_001_preprocessed.fastq.gz

148.04 MB

MOD706A25_S66_L004_R1_001_statistics.txt.gz

429 B

BBDuk (single-end)

fastqc

Directory

MOD706A38_S112_L004_R1_001_statistics.txt.gz

468 B

MOD706A38_S112_L004_R1_001_preprocessed.fastq.gz

275.48 MB

BBDuk (single-end)

MOD706A27_S85_L004_R1_001_preprocessed.fastq.gz

141.97 MB

fastqc

Directory

MOD706A27_S85_L004_R1_001_statistics.txt.gz

440 B

BBDuk (single-end)

fastqc

Directory

MOD706A1_S93_L004_R1_001_preprocessed.fastq.gz

1004.14 MB

MOD706A1_S93_L004_R1_001_statistics.txt.gz

485 B

BBDuk (single-end)

fastqc

Directory

MOD706A21_S75_L004_R1_001_statistics.txt.gz

454 B

MOD706A21_S75_L004_R1_001_preprocessed.fastq.gz

174.37 MB

STAR

MOD706A16_S8_L004_R1_001_preprocessed.bam.bai

3.08 MB

MOD706A16_S8_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.59 MB

MOD706A16_S8_L004_R1_001_preprocessed.bam

137.66 MB

MOD706A16_S8_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A16_S8_L004_R1_001_preprocessed.bw

3.63 MB

MOD706A16_S8_L004_R1_001_preprocessed_SJ.out.tab

679.01 kB

BBDuk (single-end)

fastqc

Directory

MOD706A32_S88_L004_R1_001_statistics.txt.gz

453 B

MOD706A32_S88_L004_R1_001_preprocessed.fastq.gz

206.34 MB

BBDuk (single-end)

fastqc

Directory

MOD706A26_S11_L004_R1_001_preprocessed.fastq.gz

266.40 MB

MOD706A26_S11_L004_R1_001_statistics.txt.gz

463 B

STAR

MOD706A15_S5_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A15_S5_L004_R1_001_preprocessed.bam.bai

3.32 MB

MOD706A15_S5_L004_R1_001_preprocessed_SJ.out.tab

1.29 MB

MOD706A15_S5_L004_R1_001_preprocessed.bam

512.96 MB

MOD706A15_S5_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

16.04 MB

BBDuk (single-end)

fastqc

Directory

MOD706A28_S104_L004_R1_001_preprocessed.fastq.gz

224.43 MB

MOD706A28_S104_L004_R1_001_statistics.txt.gz

452 B

BBDuk (single-end)

fastqc

Directory

MOD706A29_S125_L004_R1_001_statistics.txt.gz

455 B

MOD706A29_S125_L004_R1_001_preprocessed.fastq.gz

221.36 MB

BBDuk (single-end)

MOD706A34_S80_L004_R1_001_statistics.txt.gz

459 B

fastqc

Directory

MOD706A34_S80_L004_R1_001_preprocessed.fastq.gz

207.95 MB

BBDuk (single-end)

fastqc

Directory

MOD706A31_S37_L004_R1_001_statistics.txt.gz

461 B

MOD706A31_S37_L004_R1_001_preprocessed.fastq.gz

181.67 MB

BBDuk (single-end)

fastqc

Directory

MOD706A33_S47_L004_R1_001_preprocessed.fastq.gz

220.32 MB

MOD706A33_S47_L004_R1_001_statistics.txt.gz

452 B

BBDuk (single-end)

fastqc

Directory

MOD706A30_S32_L004_R1_001_statistics.txt.gz

456 B

MOD706A30_S32_L004_R1_001_preprocessed.fastq.gz

123.35 MB

BBDuk (single-end)

fastqc

Directory

MOD706A39_S21_L004_R1_001_preprocessed.fastq.gz

217.85 MB

MOD706A39_S21_L004_R1_001_statistics.txt.gz

468 B

BBDuk (single-end)

fastqc

Directory

MOD706A41_S7_L004_R1_001_preprocessed.fastq.gz

382.69 MB

MOD706A41_S7_L004_R1_001_statistics.txt.gz

471 B

BBDuk (single-end)

fastqc

Directory

MOD706A42_S58_L004_R1_001_preprocessed.fastq.gz

208.30 MB

MOD706A42_S58_L004_R1_001_statistics.txt.gz

459 B

BBDuk (single-end)

fastqc

Directory

MOD706A46_S106_L004_R1_001_statistics.txt.gz

463 B

MOD706A46_S106_L004_R1_001_preprocessed.fastq.gz

261.19 MB

BBDuk (single-end)

fastqc

Directory

MOD706A45_S10_L004_R1_001_statistics.txt.gz

462 B

MOD706A45_S10_L004_R1_001_preprocessed.fastq.gz

248.83 MB

BBDuk (single-end)

fastqc

Directory

MOD706A48_S83_L004_R1_001_statistics.txt.gz

441 B

MOD706A48_S83_L004_R1_001_preprocessed.fastq.gz

155.77 MB

BBDuk (single-end)

fastqc

Directory

MOD706A44_S101_L004_R1_001_preprocessed.fastq.gz

181.77 MB

MOD706A44_S101_L004_R1_001_statistics.txt.gz

466 B

BBDuk (single-end)

fastqc

Directory

MOD706A50_S24_L004_R1_001_preprocessed.fastq.gz

186.91 MB

MOD706A50_S24_L004_R1_001_statistics.txt.gz

459 B

BBDuk (single-end)

fastqc

Directory

MOD706A47_S65_L004_R1_001_preprocessed.fastq.gz

196.69 MB

MOD706A47_S65_L004_R1_001_statistics.txt.gz

463 B

BBDuk (single-end)

MOD706A52_S45_L004_R1_001_statistics.txt.gz

453 B

fastqc

Directory

MOD706A52_S45_L004_R1_001_preprocessed.fastq.gz

182.64 MB

BBDuk (single-end)

MOD706A54_S1_L004_R1_001_statistics.txt.gz

463 B

fastqc

Directory

MOD706A54_S1_L004_R1_001_preprocessed.fastq.gz

212.84 MB

BBDuk (single-end)

MOD706A5_S17_L004_R1_001_preprocessed.fastq.gz

569.99 MB

fastqc

Directory

MOD706A5_S17_L004_R1_001_statistics.txt.gz

472 B

BBDuk (single-end)

MOD706A51_S54_L004_R1_001_preprocessed.fastq.gz

279.14 MB

fastqc

Directory

MOD706A51_S54_L004_R1_001_statistics.txt.gz

455 B

STAR

MOD706A12_S68_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

18.66 MB

MOD706A12_S68_L004_R1_001_preprocessed.bam

656.90 MB

MOD706A12_S68_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A12_S68_L004_R1_001_preprocessed_SJ.out.tab

1.57 MB

MOD706A12_S68_L004_R1_001_preprocessed.bam.bai

3.43 MB

STAR

MOD706A20_S120_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.22 MB

MOD706A20_S120_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A20_S120_L004_R1_001_preprocessed.bam.bai

3.20 MB

MOD706A20_S120_L004_R1_001_preprocessed.bam

318.68 MB

MOD706A20_S120_L004_R1_001_preprocessed_SJ.out.tab

1.06 MB

MOD706A20_S120_L004_R1_001_preprocessed.bw

6.90 MB

BBDuk (single-end)

fastqc

Directory

MOD706A56_S131_L004_R1_001_statistics.txt.gz

188 B

MOD706A56_S131_L004_R1_001_preprocessed.fastq.gz

38.49 kB

BBDuk (single-end)

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MOD706A38_S112

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Directory

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fastqc

Directory

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Directory

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Directory

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fastqc

Directory

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61.86 MB

STAR

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Directory

MultiQC

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Directory

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Directory

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BBDuk (single-end)

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STAR

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Directory

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STAR

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MOD706A15_S5

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STAR

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QoRTs QC

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Directory

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Directory

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STAR

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Directory

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BBDuk (single-end)

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Directory

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1.19 MB

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Directory

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QoRTs QC

qorts_output

Directory

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3.29 kB

Samtools idxstats

idxstat_report.txt

3.25 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

6.83 MB

BBDuk (single-end)

fastqc

Directory

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed.fastq.gz

59.76 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_statistics.txt.gz

200 B

STAR

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed.bam.bai

2.88 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

3.01 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed.bw

3.28 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed.bam

94.66 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_SJ.out.tab

539.24 kB

STAR

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

12.08 MB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed.bam

372.68 MB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed.bam.bai

3.36 MB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_stats.txt

1.81 kB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_SJ.out.tab

1.10 MB

STAR

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.32 MB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam.bai

416 B

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam

2.36 kB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_stats.txt

1.77 kB

featureCounts

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_featureCounts_rc.txt.gz

3.51 MB

featureCounts_rc.txt.summary

379 B

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_fpkm.tab.gz

277.80 kB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_rc.tab.gz

200.39 kB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_tpm.tab.gz

277.95 kB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_expressions.txt.gz

735.00 kB

MOD706A23_S46_L004_R1_001_preprocessed_downsampled_preprocessed_cpm.tab.gz

183.18 kB

STAR

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled.bam.bai

5.51 kB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.27 MB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled.bam

7.26 MB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_downsampled_SJ.out.tab

52.90 kB

featureCounts

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_fpkm.tab.gz

313.84 kB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_tpm.tab.gz

313.45 kB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_expressions.txt.gz

842.37 kB

featureCounts_rc.txt.summary

370 B

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_cpm.tab.gz

207.08 kB

MOD706A23_S46_L004_R1_001_preprocessed_preprocessed_rc.tab.gz

210.29 kB

FASTQ file (single-end)

MOD706A23_S46_L004_R1_001.fastq.gz

316.88 MB

fastqc

Directory

stderr.txt

1.15 kB

MOD706A23_S46_L004_R1_001_fastqc.zip

473.41 kB

QoRTs QC

qorts_report.zip

7.31 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A23_S46_L004_R1_001_statistics.txt.gz

477 B

MOD706A23_S46_L004_R1_001_preprocessed.fastq.gz

238.49 MB

STAR

MOD706A23_S46_L004_R1_001_preprocessed.bam.bai

3.36 MB

MOD706A23_S46_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.10 MB

MOD706A23_S46_L004_R1_001_preprocessed.bam

372.64 MB

MOD706A23_S46_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A23_S46_L004_R1_001_preprocessed.bw

7.54 MB

MOD706A23_S46_L004_R1_001_preprocessed_SJ.out.tab

1.10 MB

MOD706A29_S125

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A29_S125_L004_R1_001_preprocessed_downsampled.fastq.gz

61.06 MB

STAR

MOD706A29_S125_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.20 MB

MOD706A29_S125_L004_R1_001_preprocessed.bam

338.12 MB

MOD706A29_S125_L004_R1_001_preprocessed.bam.bai

3.44 MB

MOD706A29_S125_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A29_S125_L004_R1_001_preprocessed.bw

7.25 MB

MOD706A29_S125_L004_R1_001_preprocessed_SJ.out.tab

1022.26 kB

STAR

MOD706A29_S125_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.55 MB

MOD706A29_S125_L004_R1_001_preprocessed_downsampled.bam.bai

5.41 kB

MOD706A29_S125_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A29_S125_L004_R1_001_preprocessed_downsampled.bam

6.52 MB

MOD706A29_S125_L004_R1_001_preprocessed_downsampled_SJ.out.tab

55.84 kB

STAR

MOD706A29_S125_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.74 MB

MOD706A29_S125_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A29_S125_L004_R1_001_preprocessed_downsampled.bam

1.54 kB

MOD706A29_S125_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A29_S125_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

featureCounts_rc.txt.summary

358 B

MOD706A29_S125_L004_R1_001_preprocessed_rc.tab.gz

209.49 kB

MOD706A29_S125_L004_R1_001_preprocessed_fpkm.tab.gz

313.21 kB

MOD706A29_S125_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A29_S125_L004_R1_001_preprocessed_tpm.tab.gz

313.06 kB

MOD706A29_S125_L004_R1_001_preprocessed_expressions.txt.gz

839.68 kB

MOD706A29_S125_L004_R1_001_preprocessed_cpm.tab.gz

205.12 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A29_S125_L004_R1_001_fastqc.zip

474.02 kB

MOD706A29_S125_L004_R1_001.fastq.gz

279.23 MB

Samtools idxstats

idxstat_report.txt

3.29 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A29_S125_L004_R1_001_statistics.txt.gz

455 B

MOD706A29_S125_L004_R1_001_preprocessed.fastq.gz

221.36 MB

MOD706A30_S32

Samtools idxstats

idxstat_report.txt

3.27 kB

QoRTs QC

qorts_report.zip

7.04 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A30_S32_L004_R1_001_preprocessed.bam.bai

3.06 MB

MOD706A30_S32_L004_R1_001_preprocessed.bam

191.52 MB

MOD706A30_S32_L004_R1_001_preprocessed_SJ.out.tab

823.51 kB

MOD706A30_S32_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.27 MB

MOD706A30_S32_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A30_S32_L004_R1_001_preprocessed.bw

5.20 MB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A30_S32_L004_R1_001_preprocessed_rc.tab.gz

205.19 kB

MOD706A30_S32_L004_R1_001_preprocessed_expressions.txt.gz

787.29 kB

MOD706A30_S32_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A30_S32_L004_R1_001_preprocessed_fpkm.tab.gz

296.32 kB

MOD706A30_S32_L004_R1_001_preprocessed_cpm.tab.gz

193.30 kB

MOD706A30_S32_L004_R1_001_preprocessed_tpm.tab.gz

296.18 kB

STAR

MOD706A30_S32_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.43 MB

MOD706A30_S32_L004_R1_001_preprocessed_downsampled.bam.bai

5.59 kB

MOD706A30_S32_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A30_S32_L004_R1_001_preprocessed_downsampled_SJ.out.tab

51.64 kB

MOD706A30_S32_L004_R1_001_preprocessed_downsampled.bam

6.89 MB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A30_S32_L004_R1_001.fastq.gz

152.91 MB

MOD706A30_S32_L004_R1_001_fastqc.zip

472.81 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A30_S32_L004_R1_001_preprocessed_downsampled.fastq.gz

62.35 MB

STAR

MOD706A30_S32_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A30_S32_L004_R1_001_preprocessed_downsampled.bam

1.49 kB

MOD706A30_S32_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.99 MB

MOD706A30_S32_L004_R1_001_preprocessed_downsampled_SJ.out.tab

80 B

MOD706A30_S32_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

BBDuk (single-end)

fastqc

Directory

MOD706A30_S32_L004_R1_001_statistics.txt.gz

456 B

MOD706A30_S32_L004_R1_001_preprocessed.fastq.gz

123.35 MB

MOD706A32_S88

QoRTs QC

qorts_report.zip

7.20 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A32_S88_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.79 MB

MOD706A32_S88_L004_R1_001_preprocessed.bam.bai

3.25 MB

MOD706A32_S88_L004_R1_001_preprocessed_SJ.out.tab

918.05 kB

MOD706A32_S88_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A32_S88_L004_R1_001_preprocessed.bw

5.85 MB

MOD706A32_S88_L004_R1_001_preprocessed.bam

309.21 MB

STAR

MOD706A32_S88_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.46 MB

MOD706A32_S88_L004_R1_001_preprocessed_downsampled.bam.bai

3.60 kB

MOD706A32_S88_L004_R1_001_preprocessed_downsampled_SJ.out.tab

46.84 kB

MOD706A32_S88_L004_R1_001_preprocessed_downsampled.bam

4.92 MB

MOD706A32_S88_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

MOD706A32_S88_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A32_S88_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

58.71 MB

MOD706A32_S88_L004_R1_001_preprocessed_downsampled.bam

2.36 kB

MOD706A32_S88_L004_R1_001_preprocessed_downsampled_SJ.out.tab

80 B

MOD706A32_S88_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A32_S88_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A32_S88_L004_R1_001_preprocessed_tpm.tab.gz

307.86 kB

MOD706A32_S88_L004_R1_001_preprocessed_cpm.tab.gz

205.86 kB

MOD706A32_S88_L004_R1_001_preprocessed_fpkm.tab.gz

308.01 kB

MOD706A32_S88_L004_R1_001_preprocessed_expressions.txt.gz

832.45 kB

MOD706A32_S88_L004_R1_001_preprocessed_rc.tab.gz

209.82 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A32_S88_L004_R1_001_fastqc.zip

469.19 kB

MOD706A32_S88_L004_R1_001.fastq.gz

271.39 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A32_S88_L004_R1_001_preprocessed_downsampled.fastq.gz

59.03 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

BBDuk (single-end)

fastqc

Directory

MOD706A32_S88_L004_R1_001_statistics.txt.gz

453 B

MOD706A32_S88_L004_R1_001_preprocessed.fastq.gz

206.34 MB

MOD706A10_S109

Samtools idxstats

idxstat_report.txt

3.28 kB

STAR

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.bam.bai

5.51 kB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.19 MB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.bam

6.69 MB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_SJ.out.tab

52.85 kB

STAR

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.bam

1.43 kB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.70 MB

MOD706A10_S109_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

featureCounts_rc.txt.summary

358 B

MOD706A10_S109_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A10_S109_L004_R1_001_preprocessed_rc.tab.gz

210.97 kB

MOD706A10_S109_L004_R1_001_preprocessed_fpkm.tab.gz

314.58 kB

MOD706A10_S109_L004_R1_001_preprocessed_expressions.txt.gz

849.04 kB

MOD706A10_S109_L004_R1_001_preprocessed_cpm.tab.gz

208.27 kB

MOD706A10_S109_L004_R1_001_preprocessed_tpm.tab.gz

314.44 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A10_S109_L004_R1_001.fastq.gz

305.98 MB

MOD706A10_S109_L004_R1_001_fastqc.zip

464.78 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A10_S109_L004_R1_001_preprocessed_downsampled.fastq.gz

62.04 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.34 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A10_S109_L004_R1_001_statistics.txt.gz

453 B

MOD706A10_S109_L004_R1_001_preprocessed.fastq.gz

245.37 MB

STAR

MOD706A10_S109_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.19 MB

MOD706A10_S109_L004_R1_001_preprocessed.bam

359.05 MB

MOD706A10_S109_L004_R1_001_preprocessed.bam.bai

3.15 MB

MOD706A10_S109_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A10_S109_L004_R1_001_preprocessed_SJ.out.tab

1.20 MB

MOD706A10_S109_L004_R1_001_preprocessed.bw

7.57 MB

MOD706A16_S8

STAR

MOD706A16_S8_L004_R1_001_preprocessed_downsampled.bam

6.01 MB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled.bam.bai

5.01 kB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled_SJ.out.tab

42.62 kB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

46.16 MB

FASTQ file (single-end)

fastqc

Directory

MOD706A16_S8_L004_R1_001.fastq.gz

147.65 MB

MOD706A16_S8_L004_R1_001_fastqc.zip

489.69 kB

stderr.txt

1.13 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

6.98 MB

BBDuk (single-end)

fastqc

Directory

MOD706A16_S8_L004_R1_001_preprocessed.fastq.gz

94.01 MB

MOD706A16_S8_L004_R1_001_statistics.txt.gz

439 B

featureCounts

MOD706A16_S8_L004_R1_001_preprocessed_fpkm.tab.gz

287.31 kB

MOD706A16_S8_L004_R1_001_preprocessed_tpm.tab.gz

287.29 kB

MOD706A16_S8_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

featureCounts_rc.txt.summary

356 B

MOD706A16_S8_L004_R1_001_preprocessed_cpm.tab.gz

191.68 kB

MOD706A16_S8_L004_R1_001_preprocessed_expressions.txt.gz

769.19 kB

MOD706A16_S8_L004_R1_001_preprocessed_rc.tab.gz

204.15 kB

STAR

MOD706A16_S8_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A16_S8_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

51.35 MB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled.bam

4.51 kB

MOD706A16_S8_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A16_S8_L004_R1_001_preprocessed_downsampled.fastq.gz

51.67 MB

Samtools idxstats

idxstat_report.txt

3.26 kB

STAR

MOD706A16_S8_L004_R1_001_preprocessed.bam.bai

3.08 MB

MOD706A16_S8_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.59 MB

MOD706A16_S8_L004_R1_001_preprocessed.bam

137.66 MB

MOD706A16_S8_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A16_S8_L004_R1_001_preprocessed.bw

3.63 MB

MOD706A16_S8_L004_R1_001_preprocessed_SJ.out.tab

679.01 kB

MOD706A1_S93

Samtools idxstats

idxstat_report.txt

3.32 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A1_S93_L004_R1_001_preprocessed_downsampled.fastq.gz

61.76 MB

QoRTs QC

qorts_report.zip

8.23 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A1_S93_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

40.57 MB

MOD706A1_S93_L004_R1_001_preprocessed.bam

1.39 GB

MOD706A1_S93_L004_R1_001_preprocessed.bam.bai

3.45 MB

MOD706A1_S93_L004_R1_001_preprocessed_SJ.out.tab

2.47 MB

MOD706A1_S93_L004_R1_001_preprocessed_stats.txt

1.82 kB

STAR

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.06 MB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled.bam

6.50 MB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled.bam.bai

5.18 kB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_SJ.out.tab

56.93 kB

STAR

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.43 MB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled.bam

1.17 kB

MOD706A1_S93_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

MOD706A1_S93_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.53 MB

MOD706A1_S93_L004_R1_001_preprocessed_rc.tab.gz

221.47 kB

MOD706A1_S93_L004_R1_001_preprocessed_tpm.tab.gz

348.87 kB

MOD706A1_S93_L004_R1_001_preprocessed_fpkm.tab.gz

349.54 kB

MOD706A1_S93_L004_R1_001_preprocessed_cpm.tab.gz

245.93 kB

MOD706A1_S93_L004_R1_001_preprocessed_expressions.txt.gz

960.92 kB

featureCounts_rc.txt.summary

359 B

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.13 kB

MOD706A1_S93_L004_R1_001.fastq.gz

1.24 GB

MOD706A1_S93_L004_R1_001_fastqc.zip

462.46 kB

BBDuk (single-end)

fastqc

Directory

MOD706A1_S93_L004_R1_001_preprocessed.fastq.gz

1004.14 MB

MOD706A1_S93_L004_R1_001_statistics.txt.gz

485 B

MOD706A20_S120

FASTQ file (single-end)

fastqc

Directory

MOD706A20_S120_L004_R1_001_fastqc.zip

475.78 kB

MOD706A20_S120_L004_R1_001.fastq.gz

274.65 MB

stderr.txt

1.17 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.26 MB

BBDuk (single-end)

MOD706A20_S120_L004_R1_001_preprocessed.fastq.gz

216.67 MB

fastqc

Directory

MOD706A20_S120_L004_R1_001_statistics.txt.gz

464 B

STAR

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.18 MB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.bam.bai

6.29 kB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.bam

7.70 MB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_SJ.out.tab

53.08 kB

featureCounts

MOD706A20_S120_L004_R1_001_preprocessed_rc.tab.gz

209.77 kB

featureCounts_rc.txt.summary

358 B

MOD706A20_S120_L004_R1_001_preprocessed_tpm.tab.gz

310.53 kB

MOD706A20_S120_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A20_S120_L004_R1_001_preprocessed_fpkm.tab.gz

310.71 kB

MOD706A20_S120_L004_R1_001_preprocessed_expressions.txt.gz

836.71 kB

MOD706A20_S120_L004_R1_001_preprocessed_cpm.tab.gz

204.64 kB

STAR

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.47 MB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.bam

1.79 kB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A20_S120_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A20_S120_L004_R1_001_preprocessed_downsampled.fastq.gz

61.82 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A20_S120_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.22 MB

MOD706A20_S120_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A20_S120_L004_R1_001_preprocessed.bam.bai

3.20 MB

MOD706A20_S120_L004_R1_001_preprocessed.bam

318.68 MB

MOD706A20_S120_L004_R1_001_preprocessed_SJ.out.tab

1.06 MB

MOD706A20_S120_L004_R1_001_preprocessed.bw

6.90 MB

MOD706A31_S37

STAR

MOD706A31_S37_L004_R1_001_preprocessed.bam.bai

3.02 MB

MOD706A31_S37_L004_R1_001_preprocessed.bam

261.86 MB

MOD706A31_S37_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A31_S37_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.94 MB

MOD706A31_S37_L004_R1_001_preprocessed_SJ.out.tab

918.63 kB

MOD706A31_S37_L004_R1_001_preprocessed.bw

5.32 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A31_S37_L004_R1_001_preprocessed_downsampled.fastq.gz

61.85 MB

Samtools idxstats

idxstat_report.txt

3.27 kB

QoRTs QC

qorts_report.zip

7.18 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A31_S37_L004_R1_001_preprocessed_downsampled.bam.bai

4.46 kB

MOD706A31_S37_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A31_S37_L004_R1_001_preprocessed_downsampled.bam

6.15 MB

MOD706A31_S37_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.09 MB

MOD706A31_S37_L004_R1_001_preprocessed_downsampled_SJ.out.tab

46.50 kB

STAR

MOD706A31_S37_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.49 MB

MOD706A31_S37_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A31_S37_L004_R1_001_preprocessed_downsampled.bam

1.65 kB

MOD706A31_S37_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A31_S37_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

featureCounts

MOD706A31_S37_L004_R1_001_preprocessed_rc.tab.gz

208.83 kB

MOD706A31_S37_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

featureCounts_rc.txt.summary

357 B

MOD706A31_S37_L004_R1_001_preprocessed_cpm.tab.gz

202.36 kB

MOD706A31_S37_L004_R1_001_preprocessed_tpm.tab.gz

305.07 kB

MOD706A31_S37_L004_R1_001_preprocessed_expressions.txt.gz

822.10 kB

MOD706A31_S37_L004_R1_001_preprocessed_fpkm.tab.gz

305.39 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A31_S37_L004_R1_001.fastq.gz

228.76 MB

MOD706A31_S37_L004_R1_001_fastqc.zip

465.57 kB

BBDuk (single-end)

fastqc

Directory

MOD706A31_S37_L004_R1_001_statistics.txt.gz

461 B

MOD706A31_S37_L004_R1_001_preprocessed.fastq.gz

181.67 MB

MOD706A33_S47

Samtools idxstats

idxstat_report.txt

3.28 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A33_S47_L004_R1_001_preprocessed.bam.bai

3.32 MB

MOD706A33_S47_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.20 MB

MOD706A33_S47_L004_R1_001_preprocessed.bam

336.14 MB

MOD706A33_S47_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A33_S47_L004_R1_001_preprocessed.bw

6.57 MB

MOD706A33_S47_L004_R1_001_preprocessed_SJ.out.tab

1013.45 kB

featureCounts

MOD706A33_S47_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A33_S47_L004_R1_001_preprocessed_rc.tab.gz

210.78 kB

MOD706A33_S47_L004_R1_001_preprocessed_fpkm.tab.gz

311.88 kB

featureCounts_rc.txt.summary

357 B

MOD706A33_S47_L004_R1_001_preprocessed_tpm.tab.gz

311.54 kB

MOD706A33_S47_L004_R1_001_preprocessed_cpm.tab.gz

208.85 kB

MOD706A33_S47_L004_R1_001_preprocessed_expressions.txt.gz

844.09 kB

STAR

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

51.96 MB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.bam.bai

3.88 kB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.bam

5.64 MB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

50.69 kB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.bam

2.75 kB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.82 MB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A33_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

FASTQ file (single-end)

MOD706A33_S47_L004_R1_001.fastq.gz

296.87 MB

MOD706A33_S47_L004_R1_001_fastqc.zip

468.94 kB

fastqc

Directory

stderr.txt

1.15 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A33_S47_L004_R1_001_preprocessed_downsampled.fastq.gz

57.15 MB

QoRTs QC

qorts_report.zip

7.29 MB

qorts_output

Directory

BBDuk (single-end)

fastqc

Directory

MOD706A33_S47_L004_R1_001_preprocessed.fastq.gz

220.32 MB

MOD706A33_S47_L004_R1_001_statistics.txt.gz

452 B

MOD706A39_S21

BBDuk (single-end)

fastqc

Directory

MOD706A39_S21_L004_R1_001_preprocessed.fastq.gz

217.85 MB

MOD706A39_S21_L004_R1_001_statistics.txt.gz

468 B

STAR

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

58.24 MB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled.bam

1.74 kB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A39_S21_L004_R1_001_preprocessed_downsampled.fastq.gz

58.58 MB

Samtools idxstats

idxstat_report.txt

3.29 kB

STAR

MOD706A39_S21_L004_R1_001_preprocessed.bam.bai

3.35 MB

MOD706A39_S21_L004_R1_001_preprocessed.bam

334.88 MB

MOD706A39_S21_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

13.13 MB

MOD706A39_S21_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A39_S21_L004_R1_001_preprocessed.bw

6.66 MB

MOD706A39_S21_L004_R1_001_preprocessed_SJ.out.tab

940.91 kB

featureCounts

MOD706A39_S21_L004_R1_001_preprocessed_cpm.tab.gz

204.64 kB

MOD706A39_S21_L004_R1_001_preprocessed_rc.tab.gz

209.51 kB

MOD706A39_S21_L004_R1_001_preprocessed_fpkm.tab.gz

309.98 kB

featureCounts_rc.txt.summary

357 B

MOD706A39_S21_L004_R1_001_preprocessed_tpm.tab.gz

309.62 kB

MOD706A39_S21_L004_R1_001_preprocessed_expressions.txt.gz

831.37 kB

MOD706A39_S21_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

STAR

MOD706A39_S21_L004_R1_001_preprocessed_downsampled.bam.bai

7.60 kB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled.bam

8.41 MB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

51.65 MB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A39_S21_L004_R1_001_preprocessed_downsampled_SJ.out.tab

56.51 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A39_S21_L004_R1_001.fastq.gz

289.25 MB

stderr.txt

1.15 kB

MOD706A39_S21_L004_R1_001_fastqc.zip

477.08 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.20 MB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

MOD706A53_S73

STAR

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.bam

6.90 MB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.bam.bai

5.79 kB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.38 MB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_SJ.out.tab

55.42 kB

QoRTs QC

qorts_report.zip

7.19 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A53_S73_L004_R1_001_statistics.txt.gz

457 B

MOD706A53_S73_L004_R1_001_preprocessed.fastq.gz

189.30 MB

STAR

MOD706A53_S73_L004_R1_001_preprocessed.bam.bai

3.17 MB

MOD706A53_S73_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.11 MB

MOD706A53_S73_L004_R1_001_preprocessed_SJ.out.tab

1.01 MB

MOD706A53_S73_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A53_S73_L004_R1_001_preprocessed.bam

285.48 MB

featureCounts

MOD706A53_S73_L004_R1_001_preprocessed_rc.tab.gz

209.09 kB

MOD706A53_S73_L004_R1_001_preprocessed_fpkm.tab.gz

310.99 kB

MOD706A53_S73_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

featureCounts_rc.txt.summary

357 B

MOD706A53_S73_L004_R1_001_preprocessed_tpm.tab.gz

310.68 kB

MOD706A53_S73_L004_R1_001_preprocessed_cpm.tab.gz

202.14 kB

MOD706A53_S73_L004_R1_001_preprocessed_expressions.txt.gz

831.89 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A53_S73_L004_R1_001_fastqc.zip

474.42 kB

MOD706A53_S73_L004_R1_001.fastq.gz

237.86 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.fastq.gz

62.14 MB

STAR

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.bam

1.49 kB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.79 MB

MOD706A53_S73_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

3.28 kB

MOD706A42_S58

Samtools idxstats

idxstat_report.txt

3.28 kB

STAR

MOD706A42_S58_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.82 MB

MOD706A42_S58_L004_R1_001_preprocessed.bam

303.93 MB

MOD706A42_S58_L004_R1_001_preprocessed_SJ.out.tab

932.36 kB

MOD706A42_S58_L004_R1_001_preprocessed.bam.bai

3.13 MB

MOD706A42_S58_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A42_S58_L004_R1_001_preprocessed.bw

5.76 MB

STAR

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.bam.bai

4.30 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.87 MB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_SJ.out.tab

46.04 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.bam

5.68 MB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A42_S58_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A42_S58_L004_R1_001_preprocessed_fpkm.tab.gz

309.47 kB

MOD706A42_S58_L004_R1_001_preprocessed_tpm.tab.gz

309.26 kB

MOD706A42_S58_L004_R1_001_preprocessed_expressions.txt.gz

834.58 kB

MOD706A42_S58_L004_R1_001_preprocessed_rc.tab.gz

209.95 kB

MOD706A42_S58_L004_R1_001_preprocessed_cpm.tab.gz

206.18 kB

STAR

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.99 MB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.bam

1.31 kB

MOD706A42_S58_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A42_S58_L004_R1_001.fastq.gz

263.61 MB

MOD706A42_S58_L004_R1_001_fastqc.zip

475.79 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A42_S58_L004_R1_001_preprocessed_downsampled.fastq.gz

60.33 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.24 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A42_S58_L004_R1_001_preprocessed.fastq.gz

208.30 MB

MOD706A42_S58_L004_R1_001_statistics.txt.gz

459 B

MOD706A48_S83

Samtools idxstats

idxstat_report.txt

3.28 kB

STAR

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

50.56 MB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled.bam

8.05 MB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_SJ.out.tab

55.32 kB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled.bam.bai

6.46 kB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A48_S83_L004_R1_001_preprocessed_fpkm.tab.gz

304.64 kB

MOD706A48_S83_L004_R1_001_preprocessed_rc.tab.gz

207.38 kB

MOD706A48_S83_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A48_S83_L004_R1_001_preprocessed_tpm.tab.gz

304.47 kB

MOD706A48_S83_L004_R1_001_preprocessed_cpm.tab.gz

198.53 kB

MOD706A48_S83_L004_R1_001_preprocessed_expressions.txt.gz

812.31 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A48_S83_L004_R1_001_preprocessed_downsampled.fastq.gz

57.63 MB

STAR

MOD706A48_S83_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.18 MB

MOD706A48_S83_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A48_S83_L004_R1_001_preprocessed.bam.bai

3.27 MB

MOD706A48_S83_L004_R1_001_preprocessed.bam

239.39 MB

MOD706A48_S83_L004_R1_001_preprocessed_SJ.out.tab

913.26 kB

MOD706A48_S83_L004_R1_001_preprocessed.bw

6.48 MB

STAR

MOD706A48_S83_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.31 MB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled.bam

2.84 kB

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A48_S83_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A48_S83_L004_R1_001.fastq.gz

207.65 MB

MOD706A48_S83_L004_R1_001_fastqc.zip

478.08 kB

stderr.txt

1.15 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_report.zip

7.13 MB

qorts_output

Directory

BBDuk (single-end)

fastqc

Directory

MOD706A48_S83_L004_R1_001_statistics.txt.gz

441 B

MOD706A48_S83_L004_R1_001_preprocessed.fastq.gz

155.77 MB

MOD706A14_S92

FASTQ file (single-end)

fastqc

Directory

MOD706A14_S92_L004_R1_001.fastq.gz

189.76 MB

MOD706A14_S92_L004_R1_001_fastqc.zip

470.91 kB

stderr.txt

1.15 kB

MOD706A34_S80

Samtools idxstats

idxstat_report.txt

3.28 kB

Subsample FASTQ (single-end)

fastqc

Directory

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61.51 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_report.zip

7.21 MB

qorts_output

Directory

STAR

MOD706A34_S80_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.01 MB

MOD706A34_S80_L004_R1_001_preprocessed.bam

307.43 MB

MOD706A34_S80_L004_R1_001_preprocessed.bam.bai

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MOD706A34_S80_L004_R1_001_preprocessed.bw

6.79 MB

MOD706A34_S80_L004_R1_001_preprocessed_stats.txt

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STAR

MOD706A34_S80_L004_R1_001_preprocessed_downsampled.bam

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MOD706A34_S80_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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MOD706A34_S80_L004_R1_001_preprocessed_downsampled.bam.bai

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61.16 MB

MOD706A34_S80_L004_R1_001_preprocessed_downsampled_stats.txt

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featureCounts

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357 B

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3.52 MB

MOD706A34_S80_L004_R1_001_preprocessed_expressions.txt.gz

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STAR

MOD706A34_S80_L004_R1_001_preprocessed_downsampled.bam.bai

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56.25 MB

MOD706A34_S80_L004_R1_001_preprocessed_downsampled_stats.txt

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6.28 MB

FASTQ file (single-end)

fastqc

Directory

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MOD706A34_S80_L004_R1_001.fastq.gz

262.73 MB

MOD706A34_S80_L004_R1_001_fastqc.zip

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BBDuk (single-end)

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fastqc

Directory

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207.95 MB

MOD706A37_S124

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A37_S124_L004_R1_001.fastq.gz

343.86 MB

MOD706A37_S124_L004_R1_001_fastqc.zip

464.15 kB

MOD706A43_S119

STAR

MOD706A43_S119_L004_R1_001_preprocessed.bam.bai

3.38 MB

MOD706A43_S119_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.43 MB

MOD706A43_S119_L004_R1_001_preprocessed_stats.txt

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8.70 MB

MOD706A43_S119_L004_R1_001_preprocessed.bam

431.81 MB

MOD706A43_S119_L004_R1_001_preprocessed_SJ.out.tab

1.17 MB

STAR

MOD706A43_S119_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.30 MB

MOD706A43_S119_L004_R1_001_preprocessed_downsampled.bam.bai

5.52 kB

MOD706A43_S119_L004_R1_001_preprocessed_downsampled.bam

6.31 MB

MOD706A43_S119_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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MOD706A43_S119_L004_R1_001_preprocessed_downsampled_stats.txt

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featureCounts

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MOD706A43_S119_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.53 MB

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876.53 kB

MOD706A43_S119_L004_R1_001_preprocessed_tpm.tab.gz

324.13 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.38 MB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Samtools idxstats

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3.29 kB

STAR

MOD706A43_S119_L004_R1_001_preprocessed_downsampled_stats.txt

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MOD706A43_S119_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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MOD706A43_S119_L004_R1_001_preprocessed_downsampled.bam.bai

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MOD706A43_S119_L004_R1_001_preprocessed_downsampled.bam

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FASTQ file (single-end)

fastqc

Directory

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MOD706A43_S119_L004_R1_001.fastq.gz

377.20 MB

MOD706A43_S119_L004_R1_001_fastqc.zip

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Subsample FASTQ (single-end)

fastqc

Directory

MOD706A43_S119_L004_R1_001_preprocessed_downsampled.fastq.gz

60.55 MB

BBDuk (single-end)

MOD706A43_S119_L004_R1_001_statistics.txt.gz

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fastqc

Directory

MOD706A43_S119_L004_R1_001_preprocessed.fastq.gz

294.95 MB

MOD706A51_S54

Samtools idxstats

idxstat_report.txt

3.28 kB

FASTQ file (single-end)

MOD706A51_S54_L004_R1_001.fastq.gz

356.43 MB

fastqc

Directory

stderr.txt

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MOD706A51_S54_L004_R1_001_fastqc.zip

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Subsample FASTQ (single-end)

fastqc

Directory

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60.51 MB

STAR

MOD706A51_S54_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

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MOD706A51_S54_L004_R1_001_preprocessed.bam.bai

3.21 MB

MOD706A51_S54_L004_R1_001_preprocessed.bam

387.92 MB

MOD706A51_S54_L004_R1_001_preprocessed_stats.txt

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1.05 MB

STAR

MOD706A51_S54_L004_R1_001_preprocessed_downsampled.bam

6.74 MB

MOD706A51_S54_L004_R1_001_preprocessed_downsampled_stats.txt

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featureCounts

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357 B

MOD706A51_S54_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

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STAR

MOD706A51_S54_L004_R1_001_preprocessed_downsampled_stats.txt

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60.17 MB

MOD706A51_S54_L004_R1_001_preprocessed_downsampled.bam

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0 B

MOD706A51_S54_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.35 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

MOD706A51_S54_L004_R1_001_preprocessed.fastq.gz

279.14 MB

fastqc

Directory

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455 B

MOD706A49_S102

STAR

MOD706A49_S102_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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MOD706A49_S102_L004_R1_001_preprocessed_downsampled_stats.txt

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7.20 MB

FASTQ file (single-end)

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fastqc

Directory

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273.52 MB

MOD706A49_S102_L004_R1_001_fastqc.zip

485.44 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A49_S102_L004_R1_001_preprocessed_downsampled.fastq.gz

59.02 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.26 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

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211.53 MB

MOD706A49_S102_L004_R1_001_statistics.txt.gz

449 B

STAR

MOD706A49_S102_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.18 MB

MOD706A49_S102_L004_R1_001_preprocessed.bam

306.04 MB

MOD706A49_S102_L004_R1_001_preprocessed.bam.bai

3.03 MB

MOD706A49_S102_L004_R1_001_preprocessed_stats.txt

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MOD706A49_S102_L004_R1_001_preprocessed_SJ.out.tab

1.04 MB

STAR

MOD706A49_S102_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

58.68 MB

MOD706A49_S102_L004_R1_001_preprocessed_downsampled.bam

1.31 kB

MOD706A49_S102_L004_R1_001_preprocessed_downsampled_stats.txt

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MOD706A49_S102_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A49_S102_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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featureCounts

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3.52 MB

MOD706A49_S102_L004_R1_001_preprocessed_rc.tab.gz

210.10 kB

featureCounts_rc.txt.summary

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MOD706A49_S102_L004_R1_001_preprocessed_fpkm.tab.gz

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MOD706A49_S102_L004_R1_001_preprocessed_cpm.tab.gz

206.41 kB

MOD706A49_S102_L004_R1_001_preprocessed_tpm.tab.gz

308.77 kB

MOD706A49_S102_L004_R1_001_preprocessed_expressions.txt.gz

834.46 kB

MOD706A44_S101

Samtools idxstats

idxstat_report.txt

3.28 kB

STAR

MOD706A44_S101_L004_R1_001_preprocessed_downsampled.bam

1.65 kB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled_stats.txt

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MOD706A44_S101_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

FASTQ file (single-end)

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1.17 kB

fastqc

Directory

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227.66 MB

MOD706A44_S101_L004_R1_001_fastqc.zip

465.18 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.16 MB

STAR

MOD706A44_S101_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.81 MB

MOD706A44_S101_L004_R1_001_preprocessed_stats.txt

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MOD706A44_S101_L004_R1_001_preprocessed.bam

266.27 MB

MOD706A44_S101_L004_R1_001_preprocessed.bw

6.64 MB

MOD706A44_S101_L004_R1_001_preprocessed_SJ.out.tab

921.84 kB

MOD706A44_S101_L004_R1_001_preprocessed.bam.bai

3.24 MB

STAR

MOD706A44_S101_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.87 MB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled.bam.bai

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MOD706A44_S101_L004_R1_001_preprocessed_downsampled_stats.txt

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MOD706A44_S101_L004_R1_001_preprocessed_downsampled.bam

6.02 MB

MOD706A44_S101_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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featureCounts

featureCounts_rc.txt.summary

358 B

MOD706A44_S101_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A44_S101_L004_R1_001_preprocessed_fpkm.tab.gz

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311.87 kB

MOD706A44_S101_L004_R1_001_preprocessed_cpm.tab.gz

201.58 kB

MOD706A44_S101_L004_R1_001_preprocessed_expressions.txt.gz

835.01 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A44_S101_L004_R1_001_preprocessed_downsampled.fastq.gz

61.87 MB

BBDuk (single-end)

fastqc

Directory

MOD706A44_S101_L004_R1_001_preprocessed.fastq.gz

181.77 MB

MOD706A44_S101_L004_R1_001_statistics.txt.gz

466 B

MOD706A50_S24

featureCounts

MOD706A50_S24_L004_R1_001_preprocessed_rc.tab.gz

209.43 kB

MOD706A50_S24_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A50_S24_L004_R1_001_preprocessed_fpkm.tab.gz

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MOD706A50_S24_L004_R1_001_preprocessed_expressions.txt.gz

829.55 kB

featureCounts_rc.txt.summary

357 B

MOD706A50_S24_L004_R1_001_preprocessed_cpm.tab.gz

203.42 kB

STAR

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.00 MB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled.bam

1.62 kB

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MOD706A50_S24_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

FASTQ file (single-end)

MOD706A50_S24_L004_R1_001.fastq.gz

240.66 MB

fastqc

Directory

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478.02 kB

stderr.txt

1.15 kB

Samtools idxstats

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3.28 kB

STAR

MOD706A50_S24_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.97 MB

MOD706A50_S24_L004_R1_001_preprocessed.bam.bai

3.12 MB

MOD706A50_S24_L004_R1_001_preprocessed.bam

264.85 MB

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MOD706A50_S24_L004_R1_001_preprocessed.bw

5.42 MB

STAR

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

52.55 MB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled.bam.bai

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MOD706A50_S24_L004_R1_001_preprocessed_downsampled_stats.txt

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MOD706A50_S24_L004_R1_001_preprocessed_downsampled.bam

7.02 MB

MOD706A50_S24_L004_R1_001_preprocessed_downsampled_SJ.out.tab

40.68 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A50_S24_L004_R1_001_preprocessed_downsampled.fastq.gz

59.32 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A50_S24_L004_R1_001_preprocessed.fastq.gz

186.91 MB

MOD706A50_S24_L004_R1_001_statistics.txt.gz

459 B

MOD706A12_S68

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A12_S68_L004_R1_001_preprocessed_downsampled.fastq.gz

60.86 MB

STAR

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.62 MB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled.bam.bai

5.40 kB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled.bam

6.85 MB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_SJ.out.tab

53.32 kB

featureCounts

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358 B

MOD706A12_S68_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.53 MB

MOD706A12_S68_L004_R1_001_preprocessed_tpm.tab.gz

331.23 kB

MOD706A12_S68_L004_R1_001_preprocessed_cpm.tab.gz

224.45 kB

MOD706A12_S68_L004_R1_001_preprocessed_fpkm.tab.gz

331.92 kB

MOD706A12_S68_L004_R1_001_preprocessed_expressions.txt.gz

904.40 kB

MOD706A12_S68_L004_R1_001_preprocessed_rc.tab.gz

215.88 kB

STAR

MOD706A12_S68_L004_R1_001_preprocessed_downsampled.bam

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MOD706A12_S68_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.53 MB

MOD706A12_S68_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_SJ.out.tab

41 B

MOD706A12_S68_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

Samtools idxstats

idxstat_report.txt

3.29 kB

QoRTs QC

qorts_report.zip

7.67 MB

qorts_output

Directory

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A12_S68_L004_R1_001.fastq.gz

597.02 MB

MOD706A12_S68_L004_R1_001_fastqc.zip

465.22 kB

BBDuk (single-end)

fastqc

Directory

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475 B

MOD706A12_S68_L004_R1_001_preprocessed.fastq.gz

470.10 MB

STAR

MOD706A12_S68_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

18.66 MB

MOD706A12_S68_L004_R1_001_preprocessed.bam

656.90 MB

MOD706A12_S68_L004_R1_001_preprocessed_stats.txt

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1.57 MB

MOD706A12_S68_L004_R1_001_preprocessed.bam.bai

3.43 MB

MOD706A36_S115

FASTQ file (single-end)

stderr.txt

1.17 kB

MOD706A36_S115_L004_R1_001.fastq.gz

312.31 MB

fastqc

Directory

MOD706A36_S115_L004_R1_001_fastqc.zip

471.09 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A36_S115_L004_R1_001_preprocessed.fastq.gz

243.50 MB

MOD706A36_S115_L004_R1_001_statistics.txt.gz

450 B

Samtools idxstats

idxstat_report.txt

3.29 kB

Subsample FASTQ (single-end)

fastqc

Directory

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60.88 MB

STAR

MOD706A36_S115_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.53 MB

MOD706A36_S115_L004_R1_001_preprocessed.bw

7.25 MB

MOD706A36_S115_L004_R1_001_preprocessed.bam.bai

3.34 MB

MOD706A36_S115_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A36_S115_L004_R1_001_preprocessed.bam

355.66 MB

MOD706A36_S115_L004_R1_001_preprocessed_SJ.out.tab

1.00 MB

STAR

MOD706A36_S115_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.52 MB

MOD706A36_S115_L004_R1_001_preprocessed_downsampled.bam

7.42 MB

MOD706A36_S115_L004_R1_001_preprocessed_downsampled.bam.bai

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MOD706A36_S115_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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featureCounts

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316.04 kB

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3.52 MB

featureCounts_rc.txt.summary

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MOD706A36_S115_L004_R1_001_preprocessed_expressions.txt.gz

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MOD706A36_S115_L004_R1_001_preprocessed_rc.tab.gz

211.11 kB

STAR

MOD706A36_S115_L004_R1_001_preprocessed_downsampled.bam

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MOD706A36_S115_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A36_S115_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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MOD706A36_S115_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.55 MB

MOD706A36_S115_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

QoRTs QC

qorts_report.zip

7.29 MB

qorts_output

Directory

MOD706A40_S99

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.04 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A40_S99_L004_R1_001_preprocessed.fastq.gz

111.59 MB

MOD706A40_S99_L004_R1_001_statistics.txt.gz

442 B

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A40_S99_L004_R1_001_preprocessed_downsampled.fastq.gz

64.66 MB

Samtools idxstats

idxstat_report.txt

3.26 kB

STAR

MOD706A40_S99_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

3.45 MB

MOD706A40_S99_L004_R1_001_preprocessed.bam

158.46 MB

MOD706A40_S99_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A40_S99_L004_R1_001_preprocessed.bam.bai

2.70 MB

MOD706A40_S99_L004_R1_001_preprocessed.bw

3.82 MB

MOD706A40_S99_L004_R1_001_preprocessed_SJ.out.tab

771.91 kB

STAR

MOD706A40_S99_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

58.51 MB

MOD706A40_S99_L004_R1_001_preprocessed_downsampled.bam.bai

4.62 kB

MOD706A40_S99_L004_R1_001_preprocessed_downsampled_SJ.out.tab

41.17 kB

MOD706A40_S99_L004_R1_001_preprocessed_downsampled_stats.txt

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MOD706A40_S99_L004_R1_001_preprocessed_downsampled.bam

6.45 MB

STAR

MOD706A40_S99_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A40_S99_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.28 MB

MOD706A40_S99_L004_R1_001_preprocessed_downsampled.bam

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MOD706A40_S99_L004_R1_001_preprocessed_downsampled_stats.txt

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featureCounts

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292.82 kB

MOD706A40_S99_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A40_S99_L004_R1_001_preprocessed_rc.tab.gz

205.39 kB

MOD706A40_S99_L004_R1_001_preprocessed_tpm.tab.gz

292.77 kB

MOD706A40_S99_L004_R1_001_preprocessed_expressions.txt.gz

784.04 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A40_S99_L004_R1_001.fastq.gz

135.64 MB

stderr.txt

1.15 kB

MOD706A40_S99_L004_R1_001_fastqc.zip

473.57 kB

MOD706A46_S106

STAR

MOD706A46_S106_L004_R1_001_preprocessed_downsampled.bam.bai

4.91 kB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.59 MB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled.bam

6.15 MB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_SJ.out.tab

51.44 kB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A46_S106_L004_R1_001.fastq.gz

332.92 MB

MOD706A46_S106_L004_R1_001_fastqc.zip

472.77 kB

Samtools idxstats

idxstat_report.txt

3.29 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A46_S106_L004_R1_001_preprocessed_downsampled.fastq.gz

61.85 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.32 MB

STAR

MOD706A46_S106_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.06 MB

MOD706A46_S106_L004_R1_001_preprocessed.bam.bai

3.32 MB

MOD706A46_S106_L004_R1_001_preprocessed.bam

395.86 MB

MOD706A46_S106_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A46_S106_L004_R1_001_preprocessed_SJ.out.tab

1.14 MB

MOD706A46_S106_L004_R1_001_preprocessed.bw

8.26 MB

STAR

MOD706A46_S106_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A46_S106_L004_R1_001_preprocessed_downsampled.bam

1.42 kB

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A46_S106_L004_R1_001_preprocessed_downsampled_stats.txt

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MOD706A46_S106_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.49 MB

featureCounts

MOD706A46_S106_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A46_S106_L004_R1_001_preprocessed_fpkm.tab.gz

316.86 kB

featureCounts_rc.txt.summary

358 B

MOD706A46_S106_L004_R1_001_preprocessed_rc.tab.gz

211.09 kB

MOD706A46_S106_L004_R1_001_preprocessed_expressions.txt.gz

851.55 kB

MOD706A46_S106_L004_R1_001_preprocessed_cpm.tab.gz

208.27 kB

MOD706A46_S106_L004_R1_001_preprocessed_tpm.tab.gz

316.50 kB

BBDuk (single-end)

fastqc

Directory

MOD706A46_S106_L004_R1_001_statistics.txt.gz

463 B

MOD706A46_S106_L004_R1_001_preprocessed.fastq.gz

261.19 MB

MOD706A52_S45

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A52_S45_L004_R1_001_preprocessed_downsampled.fastq.gz

60.64 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

QoRTs QC

qorts_report.zip

7.13 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A52_S45_L004_R1_001_preprocessed.bam.bai

3.14 MB

MOD706A52_S45_L004_R1_001_preprocessed.bam

269.59 MB

MOD706A52_S45_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A52_S45_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.59 MB

MOD706A52_S45_L004_R1_001_preprocessed_SJ.out.tab

916.13 kB

MOD706A52_S45_L004_R1_001_preprocessed.bw

5.86 MB

STAR

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.03 MB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled.bam

9.37 MB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_SJ.out.tab

62.06 kB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled.bam.bai

8.10 kB

STAR

MOD706A52_S45_L004_R1_001_preprocessed_downsampled.bam

1.61 kB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.30 MB

MOD706A52_S45_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A52_S45_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A52_S45_L004_R1_001_preprocessed_fpkm.tab.gz

305.39 kB

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208.46 kB

MOD706A52_S45_L004_R1_001_preprocessed_cpm.tab.gz

200.78 kB

MOD706A52_S45_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A52_S45_L004_R1_001_preprocessed_tpm.tab.gz

305.40 kB

MOD706A52_S45_L004_R1_001_preprocessed_expressions.txt.gz

820.00 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A52_S45_L004_R1_001.fastq.gz

232.38 MB

MOD706A52_S45_L004_R1_001_fastqc.zip

479.05 kB

stderr.txt

1.15 kB

BBDuk (single-end)

MOD706A52_S45_L004_R1_001_statistics.txt.gz

453 B

fastqc

Directory

MOD706A52_S45_L004_R1_001_preprocessed.fastq.gz

182.64 MB

MOD706A13_S128

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A13_S128_L004_R1_001.fastq.gz

425.76 MB

MOD706A13_S128_L004_R1_001_fastqc.zip

466.36 kB

MOD706A45_S10

featureCounts

MOD706A45_S10_L004_R1_001_preprocessed_fpkm.tab.gz

319.16 kB

MOD706A45_S10_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A45_S10_L004_R1_001_preprocessed_rc.tab.gz

211.44 kB

featureCounts_rc.txt.summary

357 B

MOD706A45_S10_L004_R1_001_preprocessed_tpm.tab.gz

319.07 kB

MOD706A45_S10_L004_R1_001_preprocessed_expressions.txt.gz

859.24 kB

MOD706A45_S10_L004_R1_001_preprocessed_cpm.tab.gz

208.29 kB

Samtools idxstats

idxstat_report.txt

3.29 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.fastq.gz

62.72 MB

fastqc

Directory

STAR

MOD706A45_S10_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.64 MB

MOD706A45_S10_L004_R1_001_preprocessed.bam

358.62 MB

MOD706A45_S10_L004_R1_001_preprocessed.bam.bai

3.31 MB

MOD706A45_S10_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A45_S10_L004_R1_001_preprocessed.bw

7.85 MB

MOD706A45_S10_L004_R1_001_preprocessed_SJ.out.tab

1.10 MB

STAR

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.bam

6.24 MB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.bam.bai

5.20 kB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.50 MB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_SJ.out.tab

58.80 kB

STAR

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A45_S10_L004_R1_001_preprocessed_downsampled.bam

1.74 kB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.37 MB

MOD706A45_S10_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.15 kB

MOD706A45_S10_L004_R1_001_fastqc.zip

468.35 kB

MOD706A45_S10_L004_R1_001.fastq.gz

310.52 MB

QoRTs QC

qorts_report.zip

7.29 MB

qorts_output

Directory

BBDuk (single-end)

fastqc

Directory

MOD706A45_S10_L004_R1_001_statistics.txt.gz

462 B

MOD706A45_S10_L004_R1_001_preprocessed.fastq.gz

248.83 MB

MOD706A54_S1

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

FASTQ file (single-end)

fastqc

Directory

MOD706A54_S1_L004_R1_001.fastq.gz

270.59 MB

MOD706A54_S1_L004_R1_001_fastqc.zip

469.01 kB

stderr.txt

1.13 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.fastq.gz

59.97 MB

STAR

MOD706A54_S1_L004_R1_001_preprocessed.bam

314.18 MB

MOD706A54_S1_L004_R1_001_preprocessed.bam.bai

3.20 MB

MOD706A54_S1_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A54_S1_L004_R1_001_preprocessed_SJ.out.tab

1.02 MB

MOD706A54_S1_L004_R1_001_preprocessed.bw

6.87 MB

MOD706A54_S1_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.89 MB

STAR

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.85 MB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.bam

7.18 MB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.bam.bai

6.24 kB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_SJ.out.tab

59.33 kB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

featureCounts

featureCounts_rc.txt.summary

356 B

MOD706A54_S1_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A54_S1_L004_R1_001_preprocessed_rc.tab.gz

210.15 kB

MOD706A54_S1_L004_R1_001_preprocessed_fpkm.tab.gz

312.28 kB

MOD706A54_S1_L004_R1_001_preprocessed_tpm.tab.gz

311.98 kB

MOD706A54_S1_L004_R1_001_preprocessed_cpm.tab.gz

204.19 kB

MOD706A54_S1_L004_R1_001_preprocessed_expressions.txt.gz

839.26 kB

STAR

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.65 MB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.bam

1.78 kB

MOD706A54_S1_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A54_S1_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

Samtools idxstats

idxstat_report.txt

3.28 kB

BBDuk (single-end)

MOD706A54_S1_L004_R1_001_statistics.txt.gz

463 B

fastqc

Directory

MOD706A54_S1_L004_R1_001_preprocessed.fastq.gz

212.84 MB

MOD706A41_S7

STAR

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.bam.bai

3.59 kB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.16 MB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_SJ.out.tab

47.12 kB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.bam

4.90 MB

STAR

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.28 MB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.bam

2.03 kB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A41_S7_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

FASTQ file (single-end)

fastqc

Directory

MOD706A41_S7_L004_R1_001.fastq.gz

487.13 MB

stderr.txt

1.13 kB

MOD706A41_S7_L004_R1_001_fastqc.zip

475.88 kB

Samtools idxstats

idxstat_report.txt

3.29 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A41_S7_L004_R1_001_preprocessed_downsampled.fastq.gz

61.62 MB

STAR

MOD706A41_S7_L004_R1_001_preprocessed.bam.bai

3.44 MB

MOD706A41_S7_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.86 MB

MOD706A41_S7_L004_R1_001_preprocessed.bam

565.43 MB

MOD706A41_S7_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A41_S7_L004_R1_001_preprocessed_SJ.out.tab

1.15 MB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A41_S7_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.53 MB

MOD706A41_S7_L004_R1_001_preprocessed_tpm.tab.gz

324.42 kB

MOD706A41_S7_L004_R1_001_preprocessed_cpm.tab.gz

220.35 kB

MOD706A41_S7_L004_R1_001_preprocessed_rc.tab.gz

214.57 kB

MOD706A41_S7_L004_R1_001_preprocessed_fpkm.tab.gz

324.89 kB

MOD706A41_S7_L004_R1_001_preprocessed_expressions.txt.gz

883.73 kB

QoRTs QC

qorts_report.zip

7.48 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A41_S7_L004_R1_001_preprocessed.fastq.gz

382.69 MB

MOD706A41_S7_L004_R1_001_statistics.txt.gz

471 B

MOD706A47_S65

STAR

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.bam

7.48 MB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.11 MB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.bam.bai

6.20 kB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_SJ.out.tab

52.86 kB

STAR

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.34 MB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A47_S65_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.bam

2.14 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.21 MB

Samtools idxstats

idxstat_report.txt

3.29 kB

STAR

MOD706A47_S65_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.14 MB

MOD706A47_S65_L004_R1_001_preprocessed.bam.bai

3.30 MB

MOD706A47_S65_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A47_S65_L004_R1_001_preprocessed.bam

299.03 MB

MOD706A47_S65_L004_R1_001_preprocessed_SJ.out.tab

1.02 MB

MOD706A47_S65_L004_R1_001_preprocessed.bw

7.27 MB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A47_S65_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A47_S65_L004_R1_001_preprocessed_rc.tab.gz

208.97 kB

MOD706A47_S65_L004_R1_001_preprocessed_fpkm.tab.gz

310.23 kB

MOD706A47_S65_L004_R1_001_preprocessed_cpm.tab.gz

201.72 kB

MOD706A47_S65_L004_R1_001_preprocessed_expressions.txt.gz

829.73 kB

MOD706A47_S65_L004_R1_001_preprocessed_tpm.tab.gz

309.76 kB

FASTQ file (single-end)

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Directory

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Subsample FASTQ (single-end)

MOD706A47_S65_L004_R1_001_preprocessed_downsampled.fastq.gz

59.67 MB

fastqc

Directory

MultiQC

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Directory

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BBDuk (single-end)

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Directory

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196.69 MB

MOD706A47_S65_L004_R1_001_statistics.txt.gz

463 B

MOD706A55_S129

FASTQ file (single-end)

MOD706A55_S129_L004_R1_001.fastq.gz

406.36 MB

stderr.txt

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fastqc

Directory

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MOD706A56_S131

STAR

MOD706A56_S131_L004_R1_001_preprocessed_downsampled.bam

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Subsample FASTQ (single-end)

fastqc

Directory

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QoRTs QC

qorts_output

Directory

qorts_report.zip

6.26 MB

MultiQC

multiqc_data

Directory

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Samtools idxstats

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3.15 kB

STAR

MOD706A56_S131_L004_R1_001_preprocessed.bam.bai

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STAR

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FASTQ file (single-end)

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Directory

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MOD706A56_S131_L004_R1_001_fastqc.zip

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BBDuk (single-end)

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Directory

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188 B

MOD706A56_S131_L004_R1_001_preprocessed.fastq.gz

38.49 kB

MOD706A11_S108

FASTQ file (single-end)

fastqc

Directory

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473.23 kB

stderr.txt

1.17 kB

MOD706A11_S108_L004_R1_001.fastq.gz

206.97 MB

MOD706A17_S72

FASTQ file (single-end)

fastqc

Directory

MOD706A17_S72_L004_R1_001.fastq.gz

307.79 MB

stderr.txt

1.15 kB

MOD706A17_S72_L004_R1_001_fastqc.zip

477.38 kB

MOD706A5_S17

STAR

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56.57 MB

MOD706A5_S17_L004_R1_001_preprocessed_downsampled.bam.bai

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7.54 MB

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FASTQ file (single-end)

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Directory

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STAR

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STAR

MOD706A5_S17_L004_R1_001_preprocessed_downsampled.bam.bai

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MOD706A5_S17_L004_R1_001_preprocessed_downsampled.bam

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Subsample FASTQ (single-end)

fastqc

Directory

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63.35 MB

QoRTs QC

qorts_report.zip

7.81 MB

qorts_output

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

BBDuk (single-end)

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fastqc

Directory

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MOD706A18_S121

Subsample FASTQ (single-end)

MOD706A18_S121_L004_R1_001_preprocessed_downsampled.fastq.gz

61.12 MB

fastqc

Directory

Samtools idxstats

idxstat_report.txt

3.27 kB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

QoRTs QC

qorts_output

Directory

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featureCounts

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3.52 MB

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STAR

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STAR

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FASTQ file (single-end)

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BBDuk (single-end)

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STAR

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MOD706A18_S121_L004_R1_001_preprocessed.bw

4.91 MB

MOD706A9_S48

STAR

MOD706A9_S48_L004_R1_001_preprocessed_downsampled.bam.bai

4.65 kB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.69 MB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled.bam

6.29 MB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled_SJ.out.tab

44.68 kB

MOD706A9_S48_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MultiQC

multiqc_data

Directory

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1.23 MB

STAR

MOD706A9_S48_L004_R1_001_preprocessed.bam

862.88 MB

MOD706A9_S48_L004_R1_001_preprocessed_stats.txt

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20.19 MB

MOD706A9_S48_L004_R1_001_preprocessed.bam.bai

3.46 MB

MOD706A9_S48_L004_R1_001_preprocessed_SJ.out.tab

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featureCounts

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MOD706A9_S48_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

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STAR

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416 B

FASTQ file (single-end)

fastqc

Directory

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Subsample FASTQ (single-end)

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Directory

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61.51 MB

Samtools idxstats

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3.30 kB

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Directory

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MOD706A9_S48_L004_R1_001_preprocessed.fastq.gz

607.30 MB

fastqc

Directory

MOD706A8_S52

Samtools idxstats

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3.30 kB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A8_S52_L004_R1_001_preprocessed_downsampled.fastq.gz

63.22 MB

QoRTs QC

qorts_output

Directory

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7.87 MB

BBDuk (single-end)

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Directory

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MOD706A8_S52_L004_R1_001_statistics.txt.gz

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STAR

MOD706A8_S52_L004_R1_001_preprocessed.bam

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MOD706A8_S52_L004_R1_001_preprocessed_stats.txt

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STAR

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MOD706A8_S52_L004_R1_001_preprocessed_downsampled.bam.bai

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MOD706A8_S52_L004_R1_001_preprocessed_downsampled.bam

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STAR

MOD706A8_S52_L004_R1_001_preprocessed_downsampled.bam.bai

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FASTQ file (single-end)

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Directory

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851.85 MB

MOD706A8_S52_L004_R1_001_fastqc.zip

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MOD706A19_S105

Subsample FASTQ (single-end)

MOD706A19_S105_L004_R1_001_preprocessed_downsampled.fastq.gz

62.31 MB

fastqc

Directory

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.16 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A19_S105_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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MOD706A19_S105_L004_R1_001_preprocessed_downsampled.bam.bai

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7.84 MB

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STAR

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344 B

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Directory

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1.17 kB

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BBDuk (single-end)

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STAR

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3.09 MB

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MOD706A19_S105_L004_R1_001_preprocessed.bw

6.28 MB

MOD706A35_S27

Samtools idxstats

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3.28 kB

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QoRTs QC

qorts_output

Directory

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STAR

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed.bw

3.28 MB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed.bam.bai

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MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed.bam

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BBDuk (single-end)

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60.51 MB

fastqc

Directory

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Subsample FASTQ (single-end)

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Directory

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60.41 MB

BBDuk (single-end)

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Directory

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featureCounts

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3.52 MB

MOD706A35_S27_L004_R1_001_preprocessed_fpkm.tab.gz

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STAR

MOD706A35_S27_L004_R1_001_preprocessed_stats.txt

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MOD706A35_S27_L004_R1_001_preprocessed.bw

5.76 MB

MultiQC

multiqc_report.html

1.19 MB

multiqc_data

Directory

STAR

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MOD706A35_S27_L004_R1_001_preprocessed_downsampled.bam

6.62 MB

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MOD706A35_S27_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_SJ.out.tab

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STAR

MOD706A35_S27_L004_R1_001_preprocessed_downsampled.bam

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MOD706A35_S27_L004_R1_001_preprocessed_downsampled.bam.bai

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MOD706A35_S27_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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MOD706A35_S27_L004_R1_001_preprocessed_downsampled_stats.txt

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Subsample FASTQ (single-end)

fastqc

Directory

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled.fastq.gz

60.39 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.19 MB

Samtools idxstats

idxstat_report.txt

3.25 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

6.80 MB

BBDuk (single-end)

fastqc

Directory

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed.fastq.gz

150.77 MB

MOD706A35_S27_L004_R1_001_preprocessed_statistics.txt.gz

203 B

STAR

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed.bam.bai

3.26 MB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

6.23 MB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed.bw

5.76 MB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_stats.txt

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MOD706A35_S27_L004_R1_001_preprocessed_preprocessed.bam

231.39 MB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_SJ.out.tab

789.11 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.fastq.gz

60.41 MB

STAR

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled.bam.bai

5.45 kB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled.bam

6.59 MB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.98 MB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled_SJ.out.tab

59.84 kB

featureCounts

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_rc.tab.gz

207.92 kB

featureCounts_rc.txt.summary

370 B

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_cpm.tab.gz

198.27 kB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_tpm.tab.gz

305.87 kB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_expressions.txt.gz

818.72 kB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_fpkm.tab.gz

305.93 kB

STAR

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled.bam.bai

344 B

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.05 MB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled.bam

1.52 kB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A35_S27_L004_R1_001_preprocessed_preprocessed_downsampled_SJ.out.tab

0 B

STAR

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam.bai

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MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.97 MB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam

6.60 MB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab

58.20 kB

STAR

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam

1.49 kB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam.bai

344 B

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.07 MB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_stats.txt

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MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab

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featureCounts

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_rc.tab.gz

201.30 kB

featureCounts_rc.txt.summary

379 B

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_featureCounts_rc.txt.gz

3.51 MB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_cpm.tab.gz

183.86 kB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_fpkm.tab.gz

282.13 kB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_expressions.txt.gz

745.28 kB

MOD706A35_S27_L004_R1_001_preprocessed_downsampled_preprocessed_tpm.tab.gz

282.30 kB

FASTQ file (single-end)

fastqc

Directory

MOD706A35_S27_L004_R1_001.fastq.gz

193.95 MB

MOD706A35_S27_L004_R1_001_fastqc.zip

468.52 kB

stderr.txt

1.15 kB

QoRTs QC

qorts_report.zip

7.09 MB

qorts_output

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

MOD706A21_S75

FASTQ file (single-end)

fastqc

Directory

MOD706A21_S75_L004_R1_001.fastq.gz

226.08 MB

MOD706A21_S75_L004_R1_001_fastqc.zip

463.63 kB

stderr.txt

1.15 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A21_S75_L004_R1_001_preprocessed_downsampled.fastq.gz

60.65 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A21_S75_L004_R1_001_preprocessed.bam.bai

3.21 MB

MOD706A21_S75_L004_R1_001_preprocessed.bam

259.43 MB

MOD706A21_S75_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.18 MB

MOD706A21_S75_L004_R1_001_preprocessed_stats.txt

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6.33 MB

MOD706A21_S75_L004_R1_001_preprocessed_SJ.out.tab

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STAR

MOD706A21_S75_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.30 MB

MOD706A21_S75_L004_R1_001_preprocessed_downsampled.bam

1.92 kB

MOD706A21_S75_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A21_S75_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A21_S75_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

STAR

MOD706A21_S75_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.02 MB

MOD706A21_S75_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A21_S75_L004_R1_001_preprocessed_downsampled.bam

7.68 MB

MOD706A21_S75_L004_R1_001_preprocessed_downsampled.bam.bai

6.18 kB

MOD706A21_S75_L004_R1_001_preprocessed_downsampled_SJ.out.tab

53.25 kB

featureCounts

MOD706A21_S75_L004_R1_001_preprocessed_rc.tab.gz

208.55 kB

MOD706A21_S75_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A21_S75_L004_R1_001_preprocessed_tpm.tab.gz

307.04 kB

MOD706A21_S75_L004_R1_001_preprocessed_cpm.tab.gz

200.65 kB

MOD706A21_S75_L004_R1_001_preprocessed_fpkm.tab.gz

306.93 kB

featureCounts_rc.txt.summary

357 B

MOD706A21_S75_L004_R1_001_preprocessed_expressions.txt.gz

822.69 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.18 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

BBDuk (single-end)

fastqc

Directory

MOD706A21_S75_L004_R1_001_statistics.txt.gz

454 B

MOD706A21_S75_L004_R1_001_preprocessed.fastq.gz

174.37 MB

MOD706A25_S66

Subsample FASTQ (single-end)

fastqc

Directory

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62.92 MB

QoRTs QC

qorts_report.zip

7.12 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

3.27 kB

STAR

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.02 MB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_SJ.out.tab

42.71 kB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled.bam.bai

4.37 kB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled.bam

6.22 MB

STAR

MOD706A25_S66_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.56 MB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A25_S66_L004_R1_001_preprocessed_downsampled.bam

1.50 kB

MOD706A25_S66_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

featureCounts

featureCounts_rc.txt.summary

357 B

MOD706A25_S66_L004_R1_001_preprocessed_fpkm.tab.gz

300.13 kB

MOD706A25_S66_L004_R1_001_preprocessed_rc.tab.gz

207.44 kB

MOD706A25_S66_L004_R1_001_preprocessed_cpm.tab.gz

198.71 kB

MOD706A25_S66_L004_R1_001_preprocessed_expressions.txt.gz

805.88 kB

MOD706A25_S66_L004_R1_001_preprocessed_tpm.tab.gz

300.14 kB

MOD706A25_S66_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

FASTQ file (single-end)

fastqc

Directory

MOD706A25_S66_L004_R1_001.fastq.gz

183.09 MB

MOD706A25_S66_L004_R1_001_fastqc.zip

480.73 kB

stderr.txt

1.15 kB

BBDuk (single-end)

fastqc

Directory

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148.04 MB

MOD706A25_S66_L004_R1_001_statistics.txt.gz

429 B

STAR

MOD706A25_S66_L004_R1_001_preprocessed.bam.bai

2.86 MB

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5.17 MB

MOD706A25_S66_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A25_S66_L004_R1_001_preprocessed.bam

213.22 MB

MOD706A25_S66_L004_R1_001_preprocessed.bw

4.55 MB

MOD706A25_S66_L004_R1_001_preprocessed_SJ.out.tab

855.49 kB

MOD706A24_S71

Samtools idxstats

idxstat_report.txt

3.29 kB

Samtools idxstats

idxstat_report.txt

3.25 kB

BBDuk (single-end)

fastqc

Directory

MOD706A24_S71_L004_R1_001_preprocessed_statistics.txt.gz

204 B

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed.fastq.gz

229.54 MB

STAR

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_unmapped.out.mate1.fastq.gz

11.47 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed.bam.bai

3.25 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed.bam

345.66 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_SJ.out.tab

1.15 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_stats.txt

1.81 kB

featureCounts

featureCounts_rc.txt.summary

379 B

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_featureCounts_rc.txt.gz

3.51 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_tpm.tab.gz

277.55 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_cpm.tab.gz

182.93 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_fpkm.tab.gz

277.47 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_expressions.txt.gz

734.68 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_rc.tab.gz

200.40 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A24_S71_L004_R1_001_preprocessed_downsampled.fastq.gz

61.15 MB

Samtools idxstats

idxstat_report.txt

3.29 kB

QoRTs QC

qorts_report.zip

7.31 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A24_S71_L004_R1_001_statistics.txt.gz

436 B

MOD706A24_S71_L004_R1_001_preprocessed.fastq.gz

229.41 MB

STAR

MOD706A24_S71_L004_R1_001_preprocessed.bam.bai

3.25 MB

MOD706A24_S71_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.49 MB

MOD706A24_S71_L004_R1_001_preprocessed.bam

345.61 MB

MOD706A24_S71_L004_R1_001_preprocessed_SJ.out.tab

1.15 MB

MOD706A24_S71_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A24_S71_L004_R1_001_preprocessed.bw

7.27 MB

featureCounts

MOD706A24_S71_L004_R1_001_preprocessed_rc.tab.gz

209.74 kB

featureCounts_rc.txt.summary

357 B

MOD706A24_S71_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A24_S71_L004_R1_001_preprocessed_fpkm.tab.gz

311.26 kB

MOD706A24_S71_L004_R1_001_preprocessed_cpm.tab.gz

205.70 kB

MOD706A24_S71_L004_R1_001_preprocessed_expressions.txt.gz

835.93 kB

MOD706A24_S71_L004_R1_001_preprocessed_tpm.tab.gz

310.94 kB

STAR

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled.bam.bai

5.57 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled.bam

7.15 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.71 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_SJ.out.tab

46.32 kB

STAR

MOD706A24_S71_L004_R1_001_preprocessed_downsampled.bam

1.64 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.81 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.31 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.19 MB

Subsample FASTQ (single-end)

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.fastq.gz

61.14 MB

fastqc

Directory

QoRTs QC

qorts_report.zip

6.85 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.19 MB

Subsample FASTQ (single-end)

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled.fastq.gz

61.13 MB

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_statistics.txt.gz

197 B

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed.fastq.gz

61.25 MB

STAR

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_unmapped.out.mate1.fastq.gz

3.04 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_stats.txt

1.80 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed.bam.bai

2.80 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed.bam

93.50 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_SJ.out.tab

594.34 kB

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3.30 MB

STAR

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.80 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled.bam.bai

416 B

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled.bam

1.77 kB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled_SJ.out.tab

0 B

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled_stats.txt

1.77 kB

STAR

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.65 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled.bam

7.16 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled.bam.bai

5.15 kB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled_SJ.out.tab

46.82 kB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_downsampled_stats.txt

1.79 kB

featureCounts

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_rc.tab.gz

209.74 kB

featureCounts_rc.txt.summary

370 B

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_fpkm.tab.gz

311.31 kB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_tpm.tab.gz

311.03 kB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_expressions.txt.gz

836.54 kB

MOD706A24_S71_L004_R1_001_preprocessed_preprocessed_cpm.tab.gz

205.49 kB

STAR

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

54.71 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam

7.14 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam.bai

5.18 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_SJ.out.tab

46.15 kB

STAR

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam.bai

416 B

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60.80 MB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled.bam

1.58 kB

MOD706A24_S71_L004_R1_001_preprocessed_downsampled_preprocessed_downsampled_stats.txt

1.77 kB

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0 B

FASTQ file (single-end)

fastqc

Directory

MOD706A24_S71_L004_R1_001_fastqc.zip

465.44 kB

MOD706A24_S71_L004_R1_001.fastq.gz

293.52 MB

stderr.txt

1.15 kB

MOD706A26_S11

featureCounts

MOD706A26_S11_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A26_S11_L004_R1_001_preprocessed_rc.tab.gz

211.45 kB

featureCounts_rc.txt.summary

357 B

MOD706A26_S11_L004_R1_001_preprocessed_cpm.tab.gz

210.25 kB

MOD706A26_S11_L004_R1_001_preprocessed_fpkm.tab.gz

313.38 kB

MOD706A26_S11_L004_R1_001_preprocessed_expressions.txt.gz

850.24 kB

MOD706A26_S11_L004_R1_001_preprocessed_tpm.tab.gz

312.85 kB

FASTQ file (single-end)

MOD706A26_S11_L004_R1_001.fastq.gz

333.49 MB

fastqc

Directory

MOD706A26_S11_L004_R1_001_fastqc.zip

470.98 kB

stderr.txt

1.15 kB

Subsample FASTQ (single-end)

MOD706A26_S11_L004_R1_001_preprocessed_downsampled.fastq.gz

62.10 MB

fastqc

Directory

STAR

MOD706A26_S11_L004_R1_001_preprocessed.bam.bai

3.17 MB

MOD706A26_S11_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.63 MB

MOD706A26_S11_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A26_S11_L004_R1_001_preprocessed.bam

380.85 MB

MOD706A26_S11_L004_R1_001_preprocessed.bw

6.36 MB

MOD706A26_S11_L004_R1_001_preprocessed_SJ.out.tab

1.03 MB

STAR

MOD706A26_S11_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.62 MB

MOD706A26_S11_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A26_S11_L004_R1_001_preprocessed_downsampled.bam

5.98 MB

MOD706A26_S11_L004_R1_001_preprocessed_downsampled_SJ.out.tab

48.44 kB

MOD706A26_S11_L004_R1_001_preprocessed_downsampled.bam.bai

4.45 kB

STAR

MOD706A26_S11_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.77 MB

MOD706A26_S11_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A26_S11_L004_R1_001_preprocessed_downsampled.bam

1.30 kB

MOD706A26_S11_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A26_S11_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

3.28 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.34 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A26_S11_L004_R1_001_preprocessed.fastq.gz

266.40 MB

MOD706A26_S11_L004_R1_001_statistics.txt.gz

463 B

MOD706A27_S85

FASTQ file (single-end)

fastqc

Directory

MOD706A27_S85_L004_R1_001.fastq.gz

178.76 MB

stderr.txt

1.15 kB

MOD706A27_S85_L004_R1_001_fastqc.zip

466.20 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

MOD706A27_S85_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

4.44 MB

MOD706A27_S85_L004_R1_001_preprocessed.bam

208.11 MB

MOD706A27_S85_L004_R1_001_preprocessed.bam.bai

2.90 MB

MOD706A27_S85_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A27_S85_L004_R1_001_preprocessed.bw

4.44 MB

MOD706A27_S85_L004_R1_001_preprocessed_SJ.out.tab

771.06 kB

STAR

MOD706A27_S85_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

55.14 MB

MOD706A27_S85_L004_R1_001_preprocessed_downsampled.bam.bai

4.62 kB

MOD706A27_S85_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A27_S85_L004_R1_001_preprocessed_downsampled.bam

6.14 MB

MOD706A27_S85_L004_R1_001_preprocessed_downsampled_SJ.out.tab

47.70 kB

STAR

MOD706A27_S85_L004_R1_001_preprocessed_downsampled.bam

1.72 kB

MOD706A27_S85_L004_R1_001_preprocessed_downsampled.bam.bai

344 B

MOD706A27_S85_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.40 MB

MOD706A27_S85_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A27_S85_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

MOD706A27_S85_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A27_S85_L004_R1_001_preprocessed_tpm.tab.gz

298.79 kB

featureCounts_rc.txt.summary

357 B

MOD706A27_S85_L004_R1_001_preprocessed_rc.tab.gz

207.31 kB

MOD706A27_S85_L004_R1_001_preprocessed_fpkm.tab.gz

298.87 kB

MOD706A27_S85_L004_R1_001_preprocessed_expressions.txt.gz

803.21 kB

MOD706A27_S85_L004_R1_001_preprocessed_cpm.tab.gz

198.18 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A27_S85_L004_R1_001_preprocessed_downsampled.fastq.gz

60.74 MB

Samtools idxstats

idxstat_report.txt

3.27 kB

QoRTs QC

qorts_report.zip

7.09 MB

qorts_output

Directory

BBDuk (single-end)

MOD706A27_S85_L004_R1_001_preprocessed.fastq.gz

141.97 MB

fastqc

Directory

MOD706A27_S85_L004_R1_001_statistics.txt.gz

440 B

MOD706A28_S104

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.17 kB

MOD706A28_S104_L004_R1_001_fastqc.zip

467.99 kB

MOD706A28_S104_L004_R1_001.fastq.gz

276.87 MB

Samtools idxstats

idxstat_report.txt

3.28 kB

STAR

MOD706A28_S104_L004_R1_001_preprocessed.bam.bai

3.21 MB

MOD706A28_S104_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD706A28_S104_L004_R1_001_preprocessed.bam

322.00 MB

MOD706A28_S104_L004_R1_001_preprocessed_SJ.out.tab

1.00 MB

MOD706A28_S104_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.08 MB

MOD706A28_S104_L004_R1_001_preprocessed.bw

6.94 MB

STAR

MOD706A28_S104_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.48 MB

MOD706A28_S104_L004_R1_001_preprocessed_downsampled.bam.bai

416 B

MOD706A28_S104_L004_R1_001_preprocessed_downsampled_stats.txt

1.77 kB

MOD706A28_S104_L004_R1_001_preprocessed_downsampled.bam

1.28 kB

MOD706A28_S104_L004_R1_001_preprocessed_downsampled_SJ.out.tab

0 B

STAR

MOD706A28_S104_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

57.25 MB

MOD706A28_S104_L004_R1_001_preprocessed_downsampled.bam

6.53 MB

MOD706A28_S104_L004_R1_001_preprocessed_downsampled.bam.bai

5.46 kB

MOD706A28_S104_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD706A28_S104_L004_R1_001_preprocessed_downsampled_SJ.out.tab

54.82 kB

featureCounts

featureCounts_rc.txt.summary

358 B

MOD706A28_S104_L004_R1_001_preprocessed_featureCounts_rc.txt.gz

3.52 MB

MOD706A28_S104_L004_R1_001_preprocessed_rc.tab.gz

210.40 kB

MOD706A28_S104_L004_R1_001_preprocessed_fpkm.tab.gz

314.37 kB

MOD706A28_S104_L004_R1_001_preprocessed_tpm.tab.gz

313.88 kB

MOD706A28_S104_L004_R1_001_preprocessed_cpm.tab.gz

206.22 kB

MOD706A28_S104_L004_R1_001_preprocessed_expressions.txt.gz

845.14 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD706A28_S104_L004_R1_001_preprocessed_downsampled.fastq.gz

62.81 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

7.26 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

MOD706A28_S104_L004_R1_001_preprocessed.fastq.gz

224.43 MB

MOD706A28_S104_L004_R1_001_statistics.txt.gz

452 B

Slamseq_development_naive_epiSC_epiLC

No Sample

MOD706A38_S112

MOD706A15_S5

MOD706A22_S79

MOD706A23_S46

MOD706A29_S125

MOD706A30_S32

MOD706A32_S88

MOD706A10_S109

MOD706A16_S8

MOD706A1_S93

MOD706A20_S120

MOD706A31_S37

MOD706A33_S47

MOD706A39_S21

MOD706A53_S73

MOD706A42_S58

MOD706A48_S83

MOD706A14_S92

MOD706A34_S80

MOD706A37_S124

MOD706A43_S119

MOD706A51_S54

MOD706A49_S102

MOD706A44_S101

MOD706A50_S24

MOD706A12_S68

MOD706A36_S115

MOD706A40_S99

MOD706A46_S106

MOD706A52_S45

MOD706A13_S128

MOD706A45_S10

MOD706A54_S1

MOD706A41_S7

MOD706A47_S65

MOD706A55_S129

MOD706A56_S131

MOD706A11_S108

MOD706A17_S72

MOD706A5_S17

MOD706A18_S121

MOD706A9_S48

MOD706A8_S52

MOD706A19_S105

MOD706A35_S27

MOD706A21_S75

MOD706A25_S66

MOD706A24_S71

MOD706A26_S11

MOD706A27_S85

MOD706A28_S104