community clip comparisons

No Sample

STAR

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed.bam

444.17 MB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed.bam.bai

20.56 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_unmapped.out.mate1.fastq.gz

310.30 MB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed.bw

105.75 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_stats.txt

1.78 kB

STAR

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_unmapped.out.mate1.fastq.gz

340.17 MB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bw

105.65 kB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bam

379.07 MB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_unmapped.out.mate1.fastq.gz

340.17 MB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bw

105.65 kB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bam

379.07 MB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_stats.txt

1.78 kB

STAR

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bam

678.65 MB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_unmapped.out.mate1.fastq.gz

607.36 MB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bw

105.94 kB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bam

678.65 MB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_unmapped.out.mate1.fastq.gz

607.36 MB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bw

105.94 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_reads_single.bed.gz

46.14 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_single.bed.gz

45.50 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_singleAndMulti.bed.gz

60.79 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_reads_single.bed.gz

46.14 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_single.bed.gz

45.50 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_singleAndMulti.bed.gz

60.79 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_single.bedgraph

212 B

iCLIP reads proxy

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.fastq.gz

340.17 MB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.fastq.gz

340.17 MB

fastqc

Directory

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.23 kB

ptbp1-hela-wt-20110427-lujh27.fastq.gz

85.32 MB

ptbp1-hela-wt-20110427-lujh27_fastqc.zip

335.06 kB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.fastq.gz

1.04 GB

report.txt

668 B

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.fastq.gz

1.04 GB

report.txt

668 B

FASTQ file (single-end)

stderr.txt

1.71 kB

fastqc

Directory

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4_fastqc.zip

405.46 kB

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4.fastq.gz

375.06 MB

FASTQ file (single-end)

fastqc

Directory

iCLIP_PTB_HeLa_rep1_WT_Hs_NNNTGGCNN_20130311_LUJH27a_2.fastq.gz

704.32 MB

iCLIP_PTB_HeLa_rep1_WT_Hs_NNNTGGCNN_20130311_LUJH27a_2_fastqc.zip

414.24 kB

stderr.txt

1.71 kB

STAR

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bw

106.02 kB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bw

106.02 kB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_unmapped.out.mate1.fastq.gz

1.04 GB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bam

1.15 GB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_unmapped.out.mate1.fastq.gz

1.04 GB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bam

1.15 GB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bam.bai

20.56 kB

iCount summary

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_gene.tsv

1.61 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_type.tsv

467 B

Paraclu

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_peaks.bed.gz

255.01 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.tar.gz

658.29 kB

Merge FASTQ (single-end)

fastqc

Directory

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4_merged_fastqc.zip

401.44 kB

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4_merged.fastq.gz

2.85 GB

Upload iCount sample annotation

public_iCLIP_PTBP1_annotation_sheet.tab.gz

898 B

public_iCLIP_PTBP1_annotation_sheet.xlsx

15.17 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

383 B

FASTQ file (CLIP)

ptbp1-hela-wt-20130311-lujh27a-1_fastqc.zip

315.27 kB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1.fastq.gz

631.66 MB

ptbp1-hela-wt-20130311-lujh27a-1_fastqc.zip

315.27 kB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1.fastq.gz

631.66 MB

FASTQ file (CLIP)

ptbp1-hela-wt-20130311-lujh27a-4_fastqc.zip

319.51 kB

ptbp1-hela-wt-20130311-lujh27a-4.fastq.gz

598.70 MB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-4_fastqc.zip

319.51 kB

ptbp1-hela-wt-20130311-lujh27a-4.fastq.gz

598.70 MB

fastqc

Directory

iCount summary

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_gene.tsv

2.03 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_type.tsv

476 B

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_gene.tsv

2.03 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_type.tsv

476 B

FASTQ file (CLIP)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-3_fastqc.zip

317.98 kB

ptbp1-hela-wt-20130311-lujh27a-3.fastq.gz

334.64 MB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-3_fastqc.zip

317.98 kB

ptbp1-hela-wt-20130311-lujh27a-3.fastq.gz

334.64 MB

FASTQ file (CLIP)

ptbp1-hela-wt-20130311-lujh27a-2_fastqc.zip

321.13 kB

ptbp1-hela-wt-20130311-lujh27a-2.fastq.gz

1.02 GB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-2_fastqc.zip

321.13 kB

ptbp1-hela-wt-20130311-lujh27a-2.fastq.gz

1.02 GB

fastqc

Directory

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.tar.gz

2.45 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.tar.gz

2.45 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.fastq.gz

340.24 MB

report.txt

668 B

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.fastq.gz

340.24 MB

report.txt

668 B

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.fastq.gz

610.29 MB

report.txt

668 B

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.fastq.gz

610.29 MB

report.txt

668 B

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.fastq.gz

644.15 MB

report.txt

668 B

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.fastq.gz

644.15 MB

report.txt

668 B

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_single.bed.gz

57.38 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_reads_single.bed.gz

57.99 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_singleAndMulti.bed.gz

76.75 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_single.bed.gz

57.38 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_reads_single.bed.gz

57.99 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_singleAndMulti.bed.gz

76.75 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.fastq.gz

607.36 MB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.fastq.gz

607.36 MB

STAR

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bam

712.09 MB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_unmapped.out.mate1.fastq.gz

643.95 MB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bw

105.86 kB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bam

712.09 MB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_unmapped.out.mate1.fastq.gz

643.95 MB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bw

105.86 kB

STAR

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_unmapped.out.mate1.fastq.gz

51.45 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.bam.bai

3.35 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_SJ.out.tab

627.08 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.bam

543.31 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_unmapped.out.mate1.fastq.gz

51.45 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.bam.bai

3.35 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_SJ.out.tab

627.08 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.bam

543.31 MB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_singleAndMulti.bed.gz

74.19 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_reads_single.bed.gz

55.49 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_single.bed.gz

54.80 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_singleAndMulti.bed.gz

74.19 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_reads_single.bed.gz

55.49 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_single.bed.gz

54.80 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_singleAndMulti.bed.gz

91.04 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_reads_single.bed.gz

65.83 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_single.bed.gz

65.02 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_singleAndMulti.bed.gz

91.04 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_reads_single.bed.gz

65.83 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_single.bed.gz

65.02 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_single.bedgraph

212 B

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.fastq.gz

643.95 MB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.fastq.gz

643.95 MB

iCLIP reads proxy

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.fastq.gz

1.04 GB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.fastq.gz

1.04 GB

fastqc

Directory

STAR

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_SJ.out.tab

1.14 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.bam

971.38 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.bam.bai

3.00 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_unmapped.out.mate1.fastq.gz

90.13 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_SJ.out.tab

1.14 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.bam

971.38 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.bam.bai

3.00 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_unmapped.out.mate1.fastq.gz

90.13 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_stats.txt

1.81 kB

STAR

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_unmapped.out.mate1.fastq.gz

88.72 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_SJ.out.tab

1.10 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.bam.bai

3.15 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.bam

1014.88 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_unmapped.out.mate1.fastq.gz

88.72 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_SJ.out.tab

1.10 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.bam.bai

3.15 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.bam

1014.88 MB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.bed.gz

25.62 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_singleAndMulti.bed.gz

37.02 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_skipped.bam

5.16 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_reads_single.bed.gz

26.61 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.bedgraph

123.93 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.bed.gz

25.62 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_singleAndMulti.bed.gz

37.02 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_skipped.bam

5.16 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_reads_single.bed.gz

26.61 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.bedgraph

123.93 MB

STAR

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.bam.bai

3.12 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_SJ.out.tab

1.75 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.bam

1.61 GB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_unmapped.out.mate1.fastq.gz

155.80 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.bam.bai

3.12 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_SJ.out.tab

1.75 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.bam

1.61 GB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_unmapped.out.mate1.fastq.gz

155.80 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_stats.txt

1.81 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_skipped.bam

5.64 kB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.bed.gz

45.17 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_reads_single.bed.gz

46.49 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.bedgraph

218.94 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_singleAndMulti.bed.gz

64.60 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_skipped.bam

5.64 kB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.bed.gz

45.17 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_reads_single.bed.gz

46.49 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.bedgraph

218.94 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_singleAndMulti.bed.gz

64.60 MB

iCount summary

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_type.tsv

470 B

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_gene.tsv

1.82 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_type.tsv

470 B

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_gene.tsv

1.82 MB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_singleAndMulti.bed.gz

66.48 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.bed.gz

46.99 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_skipped.bam

5.99 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.bedgraph

227.98 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_reads_single.bed.gz

48.43 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_singleAndMulti.bed.gz

66.48 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.bed.gz

46.99 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_skipped.bam

5.99 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.bedgraph

227.98 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_reads_single.bed.gz

48.43 MB

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.tar.gz

1.94 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.tar.gz

1.94 MB

Paraclu

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_peaks.bed.gz

1.11 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_peaks.bed.gz

1.11 MB

Paraclu

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_peaks.bed.gz

576.18 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_peaks.bed.gz

576.18 kB

iCount summary

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_gene.tsv

2.05 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_type.tsv

474 B

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_gene.tsv

2.05 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_type.tsv

474 B

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.tar.gz

1.43 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.tar.gz

1.43 MB

Paraclu

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_peaks.bed.gz

1.07 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_peaks.bed.gz

1.07 MB

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.tar.gz

1.98 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.tar.gz

1.98 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.tar.gz

742.09 kB

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.tar.gz

742.09 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_skipped.bam

7.86 kB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.bed.gz

70.79 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.bedgraph

343.90 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_reads_single.bed.gz

72.97 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_singleAndMulti.bed.gz

100.26 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_skipped.bam

7.86 kB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.bed.gz

70.79 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.bedgraph

343.90 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_reads_single.bed.gz

72.97 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_singleAndMulti.bed.gz

100.26 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.tar.gz

732.58 kB

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.tar.gz

732.58 kB

iCount summary

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_subtype.tsv

1.05 kB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_gene.tsv

2.24 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_type.tsv

481 B

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_subtype.tsv

1.05 kB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_gene.tsv

2.24 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_type.tsv

481 B

Paraclu

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_peaks.bed.gz

1.79 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_peaks.bed.gz

1.79 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.tar.gz

798.63 kB

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.tar.gz

798.63 kB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.tar.gz

694.50 kB

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.tar.gz

694.50 kB

iCount group

community PTBP1 all_grouped_reads.bed.gz

37.57 MB

community PTBP1 all_grouped_cdna.bed.gz

33.84 MB

community PTBP1 all_grouped_cdna.bedgraph

156.55 MB

iCount summary

community PTBP1 all_grouped_cdna_summary_type.tsv

450 B

community PTBP1 all_grouped_cdna_summary_gene.tsv

2.42 MB

community PTBP1 all_grouped_cdna_summary_subtype.tsv

1.03 kB

Paraclu

community PTBP1 all_grouped_cdna_peaks.bed.gz

581.97 kB

iCount RNA-maps

community PTBP1 all_grouped_cdna.tar.gz

1.75 MB

iCount annotate

community PTBP1 all_grouped_cdna_annotated.bedgraph

156.55 MB

community PTBP1 all_grouped_cdna_annotated.bed.gz

40.99 MB

iCount clusters

community PTBP1 all_grouped_cdna_clustered.bed.gz

4.63 MB

community PTBP1 all_grouped_cdna_clustered.bedgraph

10.69 MB

PEKA

community PTBP1 all_grouped_cdna

Directory

community PTBP1 all_grouped_cdna.tar.gz

1.17 MB

iCount peaks

community PTBP1 all_grouped_cdna_peaks.bed.gz

9.36 MB

community PTBP1 all_grouped_cdna_peaks.bedgraph

31.47 MB

community PTBP1 all_grouped_cdna_scores.tsv.gz

107.81 MB

Paraclu

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_peaks.bed.gz

86.00 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.tar.gz

1.11 MB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.tar.gz

465.29 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

667 B

ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz

159.61 MB

FASTQ file (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-1.fastq.gz

157.55 MB

ptbp1-hela-wt-20110427-lujh27-1_fastqc.zip

332.89 kB

stderr.txt

1.26 kB

Paraclu

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_peaks.bed.gz

42.18 kB

FASTQ file (single-end)

ptbp1-hela-wt-20110427-lujh27-2.fastq.gz

51.86 MB

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-2_fastqc.zip

335.50 kB

stderr.txt

1.26 kB

FASTQ file (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-3.fastq.gz

81.06 MB

ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip

335.37 kB

stderr.txt

1.26 kB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz

82.24 MB

report.txt

666 B

STAR

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai

3.76 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz

11.61 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam

142.46 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw

91.05 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab

193.95 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz

8.30 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz

12.34 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz

8.24 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph

38.99 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam

3.32 kB

iCount summary

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv

1.43 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv

434 B

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv

1012 B

Paraclu

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz

91.16 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz

914.75 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz

417.56 kB

FASTQ file (single-end)

ptbp1-hela-wt-no-pnk-20110427-lujh28.fastq.gz

150.99 MB

stderr.txt

1.30 kB

fastqc

Directory

ptbp1-hela-wt-no-pnk-20110427-lujh28_fastqc.zip

351.32 kB

K-mers

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.tar.gz

2.94 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

672 B

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.fastq.gz

152.39 MB

STAR

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.bam.bai

3.91 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_stats.txt

1.81 kB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_unmapped.out.mate1.fastq.gz

24.49 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_SJ.out.tab

295.92 kB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.bam

307.35 MB

iCount xlsites

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_skipped.bam

3.56 kB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.bed.gz

6.60 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_singleAndMulti.bed.gz

11.51 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_reads_single.bed.gz

7.18 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.bedgraph

30.87 MB

iCount RNA-maps

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.tar.gz

876.13 kB

iCount summary

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_subtype.tsv

1020 B

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_gene.tsv

1.49 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_type.tsv

438 B

Cutadapt (single-end)

fastqc

Directory

report.txt

664 B

ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz

86.47 MB

STAR

ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz

11.36 MB

ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai

3.80 MB

ptbp1-hela-wt-20110427-lujh27_trimmed.bam

146.28 MB

ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab

185.52 kB

ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27_trimmed.bw

91.82 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_skipped.bam

3.49 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bed.gz

8.58 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bedgraph

40.72 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_singleAndMulti.bed.gz

12.71 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_reads_single.bed.gz

8.64 MB

iCount summary

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_subtype.tsv

1016 B

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_type.tsv

431 B

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_gene.tsv

1.42 MB

Paraclu

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_peaks.bed.gz

102.78 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.tar.gz

895.61 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.tar.gz

438.23 kB

STAR

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai

3.68 MB

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam

266.61 MB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab

329.70 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz

22.60 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bed.gz

14.87 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_skipped.bam

3.56 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bedgraph

71.37 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_singleAndMulti.bed.gz

21.85 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_reads_single.bed.gz

15.00 MB

iCount summary

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_subtype.tsv

1023 B

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_gene.tsv

1.61 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_type.tsv

439 B

Paraclu

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_peaks.bed.gz

255.30 kB

Cutadapt (single-end)

ptbp1-hela-wt-20110427-lujh27-2_trimmed.fastq.gz

52.09 MB

report.txt

666 B

fastqc

Directory

STAR

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai

3.69 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz

7.38 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab

107.79 kB

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam

88.85 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw

69.63 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bed.gz

5.03 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_skipped.bam

3.24 kB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_singleAndMulti.bed.gz

7.62 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_reads_single.bed.gz

5.08 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bedgraph

23.54 MB

iCount summary

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_type.tsv

429 B

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_gene.tsv

1.27 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_subtype.tsv

1009 B

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.tar.gz

733.19 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.tar.gz

394.92 kB

FASTQ file (single-end)

iCLIP_PTB_HeLa_rep4_WT_Hs_NNNGGCANN_20130311_LUJH27a_5.fastq.gz

670.26 MB

stderr.txt

1.71 kB

iCLIP_PTB_HeLa_rep4_WT_Hs_NNNGGCANN_20130311_LUJH27a_5_fastqc.zip

414.45 kB

fastqc

Directory

FASTQ file (single-end)

fastqc

Directory

iCLIP_PTB_HeLa_rep2_WT_Hs_NNNCGGANN_20130311_LUJH27a_3_fastqc.zip

424.03 kB

iCLIP_PTB_HeLa_rep2_WT_Hs_NNNCGGANN_20130311_LUJH27a_3.fastq.gz

1.14 GB

stderr.txt

1.71 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.tar.gz

1.11 MB

Paraclu

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz

90.93 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz

909.16 kB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz

82.24 MB

report.txt

666 B

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz

86.47 MB

report.txt

664 B

Cutadapt (single-end)

report.txt

667 B

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz

159.61 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

666 B

ptbp1-hela-wt-20110427-lujh27-2_trimmed.fastq.gz

52.09 MB

STAR

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw

105.06 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam

91.30 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz

81.70 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai

19.93 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab

0 B

STAR

ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20110427-lujh27_trimmed.bw

105.03 kB

ptbp1-hela-wt-20110427-lujh27_trimmed.bam

95.47 MB

ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai

19.93 kB

ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz

86.22 MB

STAR

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam

57.73 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz

51.93 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw

104.74 kB

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai

19.72 kB

STAR

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz

159.16 MB

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam

177.00 MB

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bw

105.33 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab

0 B

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_singleAndMulti.bed.gz

34.12 kB

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_single.bed.gz

26.01 kB

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_single.bedgraph

226 B

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_reads_single.bed.gz

26.06 kB

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_skipped.bam

4.01 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.fastq.gz

81.70 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_reads_single.bed.gz

24.41 kB

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_single.bedgraph

222 B

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_single.bed.gz

24.35 kB

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_singleAndMulti.bed.gz

32.41 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.fastq.gz

86.22 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_single.bedgraph

226 B

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_singleAndMulti.bed.gz

25.17 kB

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_reads_single.bed.gz

18.88 kB

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_single.bed.gz

18.80 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.fastq.gz

51.93 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_singleAndMulti.bed.gz

44.76 kB

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_reads_single.bed.gz

32.82 kB

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_single.bed.gz

32.73 kB

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_single.bedgraph

226 B

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.fastq.gz

159.16 MB

STAR

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_unmapped.out.mate1.fastq.gz

11.50 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.bam.bai

3.75 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.bw

88.22 kB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_SJ.out.tab

192.71 kB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.bam

134.81 MB

STAR

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_unmapped.out.mate1.fastq.gz

11.26 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.bam

140.39 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_SJ.out.tab

184.71 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.bw

89.07 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.bam.bai

3.79 MB

STAR

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_unmapped.out.mate1.fastq.gz

7.31 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_SJ.out.tab

107.26 kB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.bam

85.21 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.bam.bai

3.68 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.bw

66.63 kB

STAR

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.bam

256.11 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_SJ.out.tab

328.40 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_unmapped.out.mate1.fastq.gz

22.41 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.bam.bai

3.67 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.bw

115.11 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz

12.16 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz

8.30 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz

8.23 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph

38.97 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam

3.41 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_skipped.bam

3.33 kB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_singleAndMulti.bed.gz

7.49 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_reads_single.bed.gz

5.08 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bedgraph

23.53 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bed.gz

5.02 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bed.gz

8.57 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_skipped.bam

3.57 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_singleAndMulti.bed.gz

12.54 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bedgraph

40.71 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_reads_single.bed.gz

8.64 MB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.tar.gz

887.41 kB

iCount summary

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv

461 B

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv

1.44 MB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz

567.12 kB

iCount summary

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_type.tsv

465 B

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_gene.tsv

1.41 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_skipped.bam

3.65 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_singleAndMulti.bed.gz

21.62 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_reads_single.bed.gz

14.99 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bedgraph

71.34 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bed.gz

14.86 MB

Paraclu

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_peaks.bed.gz

102.58 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.tar.gz

583.05 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.tar.gz

730.96 kB

iCount summary

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_gene.tsv

1.28 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_type.tsv

459 B

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

Paraclu

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_peaks.bed.gz

42.04 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.tar.gz

516.75 kB

iCount summary

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single_summary_type.tsv

485 B

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single_summary_gene.tsv

2.28 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single_summary_subtype.tsv

1.05 kB

iCount RNA-maps

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.tar.gz

951.23 kB

iCount xlsites

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_singleAndMulti.bed.gz

81.92 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_single.bed.gz

42.15 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_reads_single.bed.gz

42.61 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_single.bedgraph

250 B

iCount RNA-maps

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.tar.gz

713.37 kB

iCount summary

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single_summary_gene.tsv

1.66 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single_summary_type.tsv

478 B

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

iCount reads proxy

fastqc

Directory

stderr.txt

1.69 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped.fastq.gz

965.97 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_fastqc.zip

572.86 kB

iCount RNA-maps

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single.tar.gz

758.22 kB

iCount xlsites

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.bed.gz

6.92 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_singleAndMulti.bed.gz

14.18 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_skipped.bam

4.35 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_reads_single.bed.gz

7.23 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.bedgraph

30.73 MB

FASTQ file (single-end)

fastqc

Directory

ptbp1-hek293-1mio-rep1-20190610-ju.fastq.gz

238.64 MB

ptbp1-hek293-1mio-rep1-20190610-ju_fastqc.zip

478.78 kB

stderr.txt

1.26 kB

iCount RNA-maps

1MIO_Elisa_grouped_cdna.tar.gz

1.10 MB

STAR

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped.bam.bai

3.76 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped.bam

1.62 GB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

661.66 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_stats.txt

1.81 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_SJ.out.tab

930.18 kB

iCount RNA-maps

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single.tar.gz

3.30 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed.fastq.gz

234.20 MB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_fastqc.zip

463.26 kB

report.txt

702 B

Cutadapt (single-end)

fastqc

Directory

report.txt

718 B

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed.fastq.gz

163.65 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_fastqc.zip

405.13 kB

iCount RNA-maps

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single.tar.gz

759.96 kB

STAR

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

965.97 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed.bam.bai

20.56 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_stats.txt

1.78 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed.bam

1.63 GB

FASTQ file (single-end)

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-1-20190731-ju.fastq.gz

1.12 GB

stderr.txt

1.32 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_fastqc.zip

552.98 kB

iCount annotate

1MIO_Ina_grouped_cdna_annotated.bed.gz

11.31 MB

1MIO_Ina_grouped_cdna_annotated.bedgraph

38.30 MB

Paraclu

1MIO_Ina_grouped_cdna_peaks.bed.gz

151.23 kB

iCount reads proxy

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_fastqc.zip

467.10 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped.fastq.gz

635.22 MB

stderr.txt

1.69 kB

iCount summary

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single_summary_type.tsv

483 B

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single_summary_gene.tsv

1.66 MB

K-mers

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single.tar.gz

3.30 MB

iCount reads proxy

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped.fastq.gz

876.14 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_fastqc.zip

472.64 kB

stderr.txt

1.69 kB

Paraclu

1MIO_Elisa_grouped_cdna_peaks.bed.gz

242.06 kB

K-mers

1MIO_Elisa_grouped_cdna.tar.gz

9.89 MB

iCount group

1MIO_Elisa_grouped_cdna.bed.gz

19.70 MB

1MIO_Elisa_grouped_reads.bed.gz

22.02 MB

1MIO_Elisa_grouped_cdna.bedgraph

92.41 MB

iCount annotate

1MIO_Elisa_grouped_cdna_annotated.bedgraph

92.41 MB

1MIO_Elisa_grouped_cdna_annotated.bed.gz

24.15 MB

iCount summary

1MIO_Elisa_grouped_cdna_summary_type.tsv

441 B

1MIO_Elisa_grouped_cdna_summary_gene.tsv

1.87 MB

1MIO_Elisa_grouped_cdna_summary_subtype.tsv

1.00 kB

iCount group

1MIO_Ina_grouped_cdna.bed.gz

8.79 MB

1MIO_Ina_grouped_reads.bed.gz

10.00 MB

1MIO_Ina_grouped_cdna.bedgraph

38.30 MB

Paraclu

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single_peaks.bed.gz

191.11 kB

FASTQ file (single-end)

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju.fastq.gz

162.20 MB

fastqc

Directory

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_fastqc.zip

409.42 kB

stderr.txt

1.60 kB

iCount xlsites

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_skipped.bam

5.02 kB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_singleAndMulti.bed.gz

42.66 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single.bedgraph

154.89 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single.bed.gz

32.69 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_reads_single.bed.gz

33.48 MB

STAR

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

677.38 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.bam

1.76 GB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.bam.bai

20.56 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_stats.txt

1.78 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_SJ.out.tab

0 B

Cutadapt (single-end)

fastqc

Directory

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.fastq.gz

1.42 GB

report.txt

707 B

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_fastqc.zip

480.74 kB

Paraclu

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single_peaks.bed.gz

252.75 kB

K-mers

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single.tar.gz

4.70 MB

STAR

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

401.25 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_stats.txt

1.82 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.bam

6.38 GB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.bam.bai

4.14 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_SJ.out.tab

4.57 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

707 B

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.fastq.gz

1.42 GB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_fastqc.zip

480.74 kB

iCount xlsites

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_skipped.bam

3.96 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.bed.gz

106.94 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_singleAndMulti.bed.gz

143.98 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_reads_single.bed.gz

107.65 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.bedgraph

226 B

iCount reads proxy

fastqc

Directory

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_fastqc.zip

451.15 kB

stderr.txt

1.73 kB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped.fastq.gz

677.38 MB

iCount xlsites

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_skipped.bam

5.31 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.bed.gz

32.76 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_reads_single.bed.gz

33.55 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_singleAndMulti.bed.gz

43.46 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.bedgraph

155.20 MB

STAR

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

244.89 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped.bam.bai

3.37 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_stats.txt

1.81 kB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped.bam

1.17 GB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_SJ.out.tab

4.54 MB

K-mers

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.tar.gz

3.55 MB

K-mers

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.tar.gz

8.17 MB

iCount peaks

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_peaks.bed.gz

592.75 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_scores.tsv.gz

5.54 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_peaks.bedgraph

1.81 MB

iCount summary

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single_summary_type.tsv

471 B

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single_summary_gene.tsv

1.52 MB

iCount RNA-maps

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.tar.gz

772.89 kB

Paraclu

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single_peaks.bed.gz

95.09 kB

K-mers

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.tar.gz

3.47 MB

iCount summary

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single_summary_type.tsv

471 B

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single_summary_gene.tsv

1.72 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

K-mers

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.tar.gz

4.44 MB

K-mers

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.tar.gz

4.70 MB

iCount peaks

1MIO_Ina_grouped_cdna_peaks.bed.gz

1.51 MB

1MIO_Ina_grouped_cdna_scores.tsv.gz

9.84 MB

1MIO_Ina_grouped_cdna_peaks.bedgraph

3.94 MB

K-mers

1MIO_Ina_grouped_cdna.tar.gz

9.87 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed.fastq.gz

976.63 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_fastqc.zip

472.62 kB

report.txt

705 B

Paraclu

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single_peaks.bed.gz

45.76 kB

K-mers

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single.tar.gz

3.02 MB

iCount RNA-maps

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.tar.gz

3.31 MB

iCount summary

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single_summary_subtype.tsv

1.02 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single_summary_gene.tsv

2.28 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single_summary_type.tsv

449 B

Paraclu

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single_peaks.bed.gz

254.33 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.36 kB

input-ptbp1-hek293-smi-1mio-20190731-ju.fastq.gz

1.38 GB

input-ptbp1-hek293-smi-1mio-20190731-ju_fastqc.zip

481.30 kB

FASTQ file (single-end)

ptbp1-hek293-ptbp1-1mio-2-20190731-ju.fastq.gz

1.26 GB

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_fastqc.zip

476.08 kB

stderr.txt

1.32 kB

FASTQ file (single-end)

stderr.txt

1.26 kB

fastqc

Directory

ptbp1-hek293-1mio-rep2-20190610-ju_fastqc.zip

469.35 kB

ptbp1-hek293-1mio-rep2-20190610-ju.fastq.gz

315.10 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed.fastq.gz

309.34 MB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_fastqc.zip

439.24 kB

report.txt

703 B

iCount reads proxy

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped.fastq.gz

310.30 MB

stderr.txt

1.64 kB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_fastqc.zip

438.43 kB

fastqc

Directory

iCount xlsites

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_single.bed.gz

36.05 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_reads_single.bed.gz

37.80 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_singleAndMulti.bed.gz

74.26 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_single.bedgraph

216 B

STAR

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

51.85 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped.bam.bai

4.01 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped.bam

414.02 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_SJ.out.tab

361.29 kB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_stats.txt

1.81 kB

iCount xlsites

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_singleAndMulti.bed.gz

11.76 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_skipped.bam

5.04 kB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_reads_single.bed.gz

8.57 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.bed.gz

7.42 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.bedgraph

34.06 MB

STAR

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_unmapped.out.mate1.fastq.gz

234.42 MB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed.bam.bai

20.56 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed.bam

352.59 MB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_stats.txt

1.78 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed.bw

105.93 kB

iCount xlsites

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_single.bed.gz

44.61 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_singleAndMulti.bed.gz

82.05 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_reads_single.bed.gz

46.01 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_single.bedgraph

216 B

iCount reads proxy

fastqc

Directory

stderr.txt

1.64 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_fastqc.zip

459.89 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped.fastq.gz

234.42 MB

STAR

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped.bam

409.50 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_stats.txt

1.81 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_SJ.out.tab

459.71 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped.bam.bai

3.77 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

43.39 MB

iCount xlsites

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_skipped.bam

3.68 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_reads_single.bed.gz

14.27 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.bed.gz

13.04 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_singleAndMulti.bed.gz

21.89 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.bedgraph

60.61 MB

iCount peaks

1MIO_Elisa_grouped_cdna_peaks.bed.gz

374.03 kB

1MIO_Elisa_grouped_cdna_scores.tsv.gz

14.50 MB

1MIO_Elisa_grouped_cdna_peaks.bedgraph

1.22 MB

iCount reads proxy

fastqc

Directory

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped.fastq.gz

163.95 MB

stderr.txt

1.97 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_fastqc.zip

407.07 kB

STAR

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped.bw

74.36 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

54.61 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped.bam

304.59 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped.bam.bai

3.99 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_SJ.out.tab

524.98 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_stats.txt

1.81 kB

iCount summary

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_summary_type.tsv

471 B

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_summary_gene.tsv

1.58 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

Paraclu

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_peaks.bed.gz

161.33 kB

K-mers

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.tar.gz

5.09 MB

STAR

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_unmapped.out.mate1.fastq.gz

163.95 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed.bam.bai

20.56 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed.bam

238.43 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed.bw

105.62 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_stats.txt

1.78 kB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single.bedgraph

12.57 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_skipped.bam

6.25 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single.bed.gz

2.99 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_singleAndMulti.bed.gz

6.94 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_reads_single.bed.gz

3.39 MB

Paraclu

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single_peaks.bed.gz

28.92 kB

K-mers

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single.tar.gz

2.77 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed.fastq.gz

1.13 GB

report.txt

705 B

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_fastqc.zip

556.63 kB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_singleAndMulti.bed.gz

94.73 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_single.bedgraph

222 B

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_single.bed.gz

72.00 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_reads_single.bed.gz

79.79 kB

iCount summary

1MIO_Ina_grouped_cdna_summary_subtype.tsv

1.02 kB

1MIO_Ina_grouped_cdna_summary_type.tsv

449 B

1MIO_Ina_grouped_cdna_summary_gene.tsv

2.10 MB

iCount RNA-maps

1MIO_Ina_grouped_cdna.tar.gz

1.20 MB

FASTQ file (single-end)

ptbp1-hek293-ptbp1-1mio-3-20190731-ju.fastq.gz

947.73 MB

fastqc

Directory

stderr.txt

1.32 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_fastqc.zip

470.63 kB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_single.bed.gz

71.78 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_singleAndMulti.bed.gz

88.97 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_single.bedgraph

222 B

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_reads_single.bed.gz

80.43 kB

Paraclu

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single_peaks.bed.gz

52.38 kB

STAR

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

206.09 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped.bam

1.03 GB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped.bam.bai

3.81 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_stats.txt

1.82 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_SJ.out.tab

920.26 kB

iCount summary

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single_summary_gene.tsv

1.62 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single_summary_type.tsv

478 B

STAR

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_stats.txt

1.78 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed.bam.bai

20.49 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed.bam

1.20 GB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

635.22 MB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_reads_single.bed.gz

3.83 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single.bed.gz

3.37 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_skipped.bam

10.37 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_singleAndMulti.bed.gz

7.02 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single.bedgraph

14.31 MB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_single.bed.gz

77.16 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_reads_single.bed.gz

86.71 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_single.bedgraph

222 B

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_singleAndMulti.bed.gz

102.67 kB

iCount RNA-maps

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single.tar.gz

744.33 kB

STAR

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

349.12 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped.bam.bai

3.90 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_stats.txt

1.82 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped.bam

1.40 GB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_SJ.out.tab

944.58 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

705 B

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed.fastq.gz

1.29 GB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_fastqc.zip

476.78 kB

STAR

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_stats.txt

1.79 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

876.14 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed.bam

1.65 GB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed.bam.bai

20.56 kB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_skipped.bam

8.27 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_singleAndMulti.bed.gz

7.23 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single.bed.gz

3.20 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_reads_single.bed.gz

3.64 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single.bedgraph

13.48 MB

Copy of PTBP1_Hela_WT_20110427_LUjh27_3

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz

82.24 MB

report.txt

666 B

FASTQ file (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-3.fastq.gz

81.06 MB

ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip

335.37 kB

stderr.txt

1.26 kB

STAR

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai

3.76 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz

11.61 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam

142.46 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw

91.05 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab

193.95 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz

8.30 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz

12.34 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz

8.24 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph

38.99 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam

3.32 kB

iCount summary

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv

1.43 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv

434 B

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv

1012 B

Paraclu

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz

91.16 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz

914.75 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz

417.56 kB

Paraclu

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz

90.93 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz

909.16 kB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz

82.24 MB

report.txt

666 B

STAR

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw

105.06 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam

91.30 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz

81.70 MB

ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai

19.93 kB

ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab

0 B

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_singleAndMulti.bed.gz

34.12 kB

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_single.bed.gz

26.01 kB

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_single.bedgraph

226 B

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_reads_single.bed.gz

26.06 kB

ptbp1-hela-wt-20110427-lujh27-3_premapped_to_ncRNAs_skipped.bam

4.01 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.fastq.gz

81.70 MB

STAR

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_unmapped.out.mate1.fastq.gz

11.50 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.bam.bai

3.75 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.bw

88.22 kB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_SJ.out.tab

192.71 kB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.bam

134.81 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz

12.16 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz

8.30 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz

8.23 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph

38.97 MB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam

3.41 kB

iCount summary

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv

461 B

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv

1.44 MB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz

567.12 kB

Copy of input:PTBP1_HEK293_SMI_1MIO_20190731_JU

Cutadapt (single-end)

report.txt

707 B

fastqc

Directory

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.fastq.gz

1.42 GB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_fastqc.zip

480.74 kB

iCount summary

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single_summary_type.tsv

485 B

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single_summary_gene.tsv

2.28 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single_summary_subtype.tsv

1.05 kB

iCount RNA-maps

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single.tar.gz

3.30 MB

iCount xlsites

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_skipped.bam

5.02 kB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_singleAndMulti.bed.gz

42.66 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single.bedgraph

154.89 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single.bed.gz

32.69 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_reads_single.bed.gz

33.48 MB

STAR

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

677.38 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.bam

1.76 GB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.bam.bai

20.56 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_stats.txt

1.78 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_SJ.out.tab

0 B

Paraclu

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single_peaks.bed.gz

252.75 kB

K-mers

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_single.tar.gz

4.70 MB

STAR

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

401.25 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_stats.txt

1.82 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.bam

6.38 GB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.bam.bai

4.14 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_SJ.out.tab

4.57 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

707 B

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed.fastq.gz

1.42 GB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_fastqc.zip

480.74 kB

iCount xlsites

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_skipped.bam

3.96 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.bed.gz

106.94 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_singleAndMulti.bed.gz

143.98 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_reads_single.bed.gz

107.65 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.bedgraph

226 B

iCount reads proxy

fastqc

Directory

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_fastqc.zip

451.15 kB

stderr.txt

1.73 kB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped.fastq.gz

677.38 MB

iCount xlsites

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_skipped.bam

5.31 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.bed.gz

32.76 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_reads_single.bed.gz

33.55 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_singleAndMulti.bed.gz

43.46 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.bedgraph

155.20 MB

STAR

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

244.89 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped.bam.bai

3.37 MB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_stats.txt

1.81 kB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped.bam

1.17 GB

input-ptbp1-hek293-smi-1mio-20190731-jufastqgz_unmapped_SJ.out.tab

4.54 MB

iCount RNA-maps

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single.tar.gz

3.31 MB

iCount summary

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single_summary_subtype.tsv

1.02 kB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single_summary_gene.tsv

2.28 MB

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single_summary_type.tsv

449 B

Paraclu

input-ptbp1-hek293-smi-1mio-20190731-ju_trimmed_single_peaks.bed.gz

254.33 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.36 kB

input-ptbp1-hek293-smi-1mio-20190731-ju.fastq.gz

1.38 GB

input-ptbp1-hek293-smi-1mio-20190731-ju_fastqc.zip

481.30 kB

Copy of PTBP1_Hela_WT no PNK_20110427_LUjh28

Paraclu

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_peaks.bed.gz

86.00 kB

FASTQ file (single-end)

ptbp1-hela-wt-no-pnk-20110427-lujh28.fastq.gz

150.99 MB

stderr.txt

1.30 kB

fastqc

Directory

ptbp1-hela-wt-no-pnk-20110427-lujh28_fastqc.zip

351.32 kB

K-mers

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.tar.gz

2.94 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

672 B

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.fastq.gz

152.39 MB

STAR

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.bam.bai

3.91 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_stats.txt

1.81 kB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_unmapped.out.mate1.fastq.gz

24.49 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_SJ.out.tab

295.92 kB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.bam

307.35 MB

iCount xlsites

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_skipped.bam

3.56 kB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.bed.gz

6.60 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_singleAndMulti.bed.gz

11.51 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_reads_single.bed.gz

7.18 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.bedgraph

30.87 MB

iCount RNA-maps

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.tar.gz

876.13 kB

iCount summary

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_subtype.tsv

1020 B

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_gene.tsv

1.49 MB

ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_type.tsv

438 B

Copy of PTBP1_Hela_WT_20110427_LUjh27

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.23 kB

ptbp1-hela-wt-20110427-lujh27.fastq.gz

85.32 MB

ptbp1-hela-wt-20110427-lujh27_fastqc.zip

335.06 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

664 B

ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz

86.47 MB

STAR

ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz

11.36 MB

ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai

3.80 MB

ptbp1-hela-wt-20110427-lujh27_trimmed.bam

146.28 MB

ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab

185.52 kB

ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27_trimmed.bw

91.82 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_skipped.bam

3.49 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bed.gz

8.58 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bedgraph

40.72 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_singleAndMulti.bed.gz

12.71 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_reads_single.bed.gz

8.64 MB

iCount summary

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_subtype.tsv

1016 B

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_type.tsv

431 B

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_gene.tsv

1.42 MB

Paraclu

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_peaks.bed.gz

102.78 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.tar.gz

895.61 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.tar.gz

438.23 kB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz

86.47 MB

report.txt

664 B

STAR

ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20110427-lujh27_trimmed.bw

105.03 kB

ptbp1-hela-wt-20110427-lujh27_trimmed.bam

95.47 MB

ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai

19.93 kB

ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz

86.22 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_reads_single.bed.gz

24.41 kB

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_single.bedgraph

222 B

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_single.bed.gz

24.35 kB

ptbp1-hela-wt-20110427-lujh27_premapped_to_ncRNAs_singleAndMulti.bed.gz

32.41 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.fastq.gz

86.22 MB

STAR

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_unmapped.out.mate1.fastq.gz

11.26 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.bam

140.39 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_SJ.out.tab

184.71 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.bw

89.07 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.bam.bai

3.79 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bed.gz

8.57 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_skipped.bam

3.57 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_singleAndMulti.bed.gz

12.54 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bedgraph

40.71 MB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_reads_single.bed.gz

8.64 MB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.tar.gz

887.41 kB

iCount summary

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_subtype.tsv

1.02 kB

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_type.tsv

465 B

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_gene.tsv

1.41 MB

Paraclu

ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_peaks.bed.gz

102.58 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.tar.gz

583.05 kB

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4.fq.gz

FASTQ file (single-end)

fastqc

Directory

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4_fastqc.zip

405.46 kB

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4.fastq.gz

375.06 MB

stderr.txt

1.71 kB

iCLIP_PTB_HeLa_rep1_WT_Hs_NNNTGGCNN_20130311_LUJH27a_2.fq.gz

FASTQ file (single-end)

fastqc

Directory

iCLIP_PTB_HeLa_rep1_WT_Hs_NNNTGGCNN_20130311_LUJH27a_2.fastq.gz

704.32 MB

iCLIP_PTB_HeLa_rep1_WT_Hs_NNNTGGCNN_20130311_LUJH27a_2_fastqc.zip

414.24 kB

stderr.txt

1.71 kB

iCLIP_PTB_HeLa_rep4_WT_Hs_NNNGGCANN_20130311_LUJH27a_5.fq.gz

FASTQ file (single-end)

iCLIP_PTB_HeLa_rep4_WT_Hs_NNNGGCANN_20130311_LUJH27a_5.fastq.gz

670.26 MB

stderr.txt

1.71 kB

iCLIP_PTB_HeLa_rep4_WT_Hs_NNNGGCANN_20130311_LUJH27a_5_fastqc.zip

414.45 kB

fastqc

Directory

iCLIP_PTB_HeLa_rep2_WT_Hs_NNNCGGANN_20130311_LUJH27a_3.fq.gz

FASTQ file (single-end)

fastqc

Directory

iCLIP_PTB_HeLa_rep2_WT_Hs_NNNCGGANN_20130311_LUJH27a_3_fastqc.zip

424.03 kB

iCLIP_PTB_HeLa_rep2_WT_Hs_NNNCGGANN_20130311_LUJH27a_3.fastq.gz

1.14 GB

stderr.txt

1.71 kB

Copy of PTBP1_Hela_WT_20110427_LUjh27_2

Paraclu

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_peaks.bed.gz

42.18 kB

FASTQ file (single-end)

ptbp1-hela-wt-20110427-lujh27-2.fastq.gz

51.86 MB

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-2_fastqc.zip

335.50 kB

stderr.txt

1.26 kB

Cutadapt (single-end)

ptbp1-hela-wt-20110427-lujh27-2_trimmed.fastq.gz

52.09 MB

report.txt

666 B

fastqc

Directory

STAR

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai

3.69 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz

7.38 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab

107.79 kB

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam

88.85 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw

69.63 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bed.gz

5.03 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_skipped.bam

3.24 kB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_singleAndMulti.bed.gz

7.62 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_reads_single.bed.gz

5.08 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bedgraph

23.54 MB

iCount summary

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_type.tsv

429 B

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_gene.tsv

1.27 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_subtype.tsv

1009 B

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.tar.gz

733.19 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.tar.gz

394.92 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

666 B

ptbp1-hela-wt-20110427-lujh27-2_trimmed.fastq.gz

52.09 MB

STAR

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam

57.73 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz

51.93 MB

ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw

104.74 kB

ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai

19.72 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_single.bedgraph

226 B

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_singleAndMulti.bed.gz

25.17 kB

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_reads_single.bed.gz

18.88 kB

ptbp1-hela-wt-20110427-lujh27-2_premapped_to_ncRNAs_single.bed.gz

18.80 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.fastq.gz

51.93 MB

STAR

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_unmapped.out.mate1.fastq.gz

7.31 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_SJ.out.tab

107.26 kB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.bam

85.21 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.bam.bai

3.68 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.bw

66.63 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_skipped.bam

3.33 kB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_singleAndMulti.bed.gz

7.49 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_reads_single.bed.gz

5.08 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bedgraph

23.53 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bed.gz

5.02 MB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.tar.gz

730.96 kB

iCount summary

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_gene.tsv

1.28 MB

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_type.tsv

459 B

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_subtype.tsv

1.01 kB

Paraclu

ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_peaks.bed.gz

42.04 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.tar.gz

516.75 kB

Copy of PTBP1_Hela_WT_20110427_LUjh27_1

iCount summary

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_gene.tsv

1.61 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_type.tsv

467 B

Paraclu

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_peaks.bed.gz

255.01 kB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.tar.gz

658.29 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.tar.gz

1.11 MB

PEKA

4mer analysis of ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.tar.gz

465.29 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

667 B

ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz

159.61 MB

FASTQ file (single-end)

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-1.fastq.gz

157.55 MB

ptbp1-hela-wt-20110427-lujh27-1_fastqc.zip

332.89 kB

stderr.txt

1.26 kB

STAR

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai

3.68 MB

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam

266.61 MB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab

329.70 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz

22.60 MB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bed.gz

14.87 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_skipped.bam

3.56 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bedgraph

71.37 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_singleAndMulti.bed.gz

21.85 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_reads_single.bed.gz

15.00 MB

iCount summary

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_subtype.tsv

1023 B

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_gene.tsv

1.61 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_type.tsv

439 B

Paraclu

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_peaks.bed.gz

255.30 kB

iCount RNA-maps

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.tar.gz

1.11 MB

Cutadapt (single-end)

report.txt

667 B

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz

159.61 MB

STAR

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz

159.16 MB

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam

177.00 MB

ptbp1-hela-wt-20110427-lujh27-1_trimmed.bw

105.33 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab

0 B

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_singleAndMulti.bed.gz

44.76 kB

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_reads_single.bed.gz

32.82 kB

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_single.bed.gz

32.73 kB

ptbp1-hela-wt-20110427-lujh27-1_premapped_to_ncRNAs_single.bedgraph

226 B

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.fastq.gz

159.16 MB

STAR

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.bam

256.11 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_SJ.out.tab

328.40 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_stats.txt

1.80 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_unmapped.out.mate1.fastq.gz

22.41 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.bam.bai

3.67 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.bw

115.11 kB

iCount xlsites

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_skipped.bam

3.65 kB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_singleAndMulti.bed.gz

21.62 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_reads_single.bed.gz

14.99 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bedgraph

71.34 MB

ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bed.gz

14.86 MB

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4.fq.gz, iCLIP_PTB_HeLa_rep1_WT_Hs_NNNTGGCNN...

Merge FASTQ (single-end)

fastqc

Directory

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4_merged_fastqc.zip

401.44 kB

iCLIP_PTB_HeLa_rep3_WT_Hs_NNNTTAANN_20130311_LUJH27a_4_merged.fastq.gz

2.85 GB

PTBP1_Hela_WT_20130311_LUJH27a_1

FASTQ file (CLIP)

ptbp1-hela-wt-20130311-lujh27a-1_fastqc.zip

315.27 kB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1.fastq.gz

631.66 MB

iCount summary

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_gene.tsv

2.03 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_type.tsv

476 B

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.fastq.gz

644.15 MB

report.txt

668 B

STAR

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bam

712.09 MB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_unmapped.out.mate1.fastq.gz

643.95 MB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bw

105.86 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_singleAndMulti.bed.gz

74.19 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_reads_single.bed.gz

55.49 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_single.bed.gz

54.80 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.fastq.gz

643.95 MB

STAR

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_unmapped.out.mate1.fastq.gz

88.72 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_SJ.out.tab

1.10 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.bam.bai

3.15 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.bam

1014.88 MB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_singleAndMulti.bed.gz

66.48 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.bed.gz

46.99 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_skipped.bam

5.99 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.bedgraph

227.98 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_reads_single.bed.gz

48.43 MB

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.tar.gz

1.94 MB

Paraclu

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_peaks.bed.gz

1.11 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.tar.gz

742.09 kB

PTBP1_Hela_WT_20130311_LUJH27a_3

FASTQ file (CLIP)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-3_fastqc.zip

317.98 kB

ptbp1-hela-wt-20130311-lujh27a-3.fastq.gz

334.64 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.fastq.gz

340.24 MB

report.txt

668 B

STAR

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_unmapped.out.mate1.fastq.gz

340.17 MB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bw

105.65 kB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bam

379.07 MB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_stats.txt

1.78 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_reads_single.bed.gz

46.14 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_single.bed.gz

45.50 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_singleAndMulti.bed.gz

60.79 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_single.bedgraph

212 B

iCLIP reads proxy

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.fastq.gz

340.17 MB

fastqc

Directory

STAR

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_unmapped.out.mate1.fastq.gz

51.45 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.bam.bai

3.35 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_SJ.out.tab

627.08 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.bam

543.31 MB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.bed.gz

25.62 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_singleAndMulti.bed.gz

37.02 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_skipped.bam

5.16 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_reads_single.bed.gz

26.61 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.bedgraph

123.93 MB

iCount summary

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_type.tsv

470 B

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_gene.tsv

1.82 MB

Paraclu

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_peaks.bed.gz

576.18 kB

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.tar.gz

1.43 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.tar.gz

732.58 kB

PTBP1_Hela_WT_20130311_LUJH27a_2

FASTQ file (CLIP)

ptbp1-hela-wt-20130311-lujh27a-2_fastqc.zip

321.13 kB

ptbp1-hela-wt-20130311-lujh27a-2.fastq.gz

1.02 GB

fastqc

Directory

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.tar.gz

2.45 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.fastq.gz

1.04 GB

report.txt

668 B

STAR

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bw

106.02 kB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_unmapped.out.mate1.fastq.gz

1.04 GB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bam

1.15 GB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bam.bai

20.56 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_singleAndMulti.bed.gz

91.04 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_reads_single.bed.gz

65.83 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_single.bed.gz

65.02 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_single.bedgraph

212 B

iCLIP reads proxy

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.fastq.gz

1.04 GB

fastqc

Directory

STAR

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.bam.bai

3.12 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_SJ.out.tab

1.75 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.bam

1.61 GB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_unmapped.out.mate1.fastq.gz

155.80 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_stats.txt

1.81 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_skipped.bam

7.86 kB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.bed.gz

70.79 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.bedgraph

343.90 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_reads_single.bed.gz

72.97 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_singleAndMulti.bed.gz

100.26 MB

iCount summary

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_subtype.tsv

1.05 kB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_gene.tsv

2.24 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_type.tsv

481 B

Paraclu

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_peaks.bed.gz

1.79 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.tar.gz

694.50 kB

PTBP1_Hela_WT_20130311_LUJH27a_4

FASTQ file (CLIP)

ptbp1-hela-wt-20130311-lujh27a-4_fastqc.zip

319.51 kB

ptbp1-hela-wt-20130311-lujh27a-4.fastq.gz

598.70 MB

fastqc

Directory

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.fastq.gz

610.29 MB

report.txt

668 B

STAR

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bam

678.65 MB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_unmapped.out.mate1.fastq.gz

607.36 MB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bw

105.94 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_single.bed.gz

57.38 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_reads_single.bed.gz

57.99 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_singleAndMulti.bed.gz

76.75 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.fastq.gz

607.36 MB

STAR

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_SJ.out.tab

1.14 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.bam

971.38 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.bam.bai

3.00 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_unmapped.out.mate1.fastq.gz

90.13 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_stats.txt

1.81 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_skipped.bam

5.64 kB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.bed.gz

45.17 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_reads_single.bed.gz

46.49 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.bedgraph

218.94 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_singleAndMulti.bed.gz

64.60 MB

iCount summary

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_gene.tsv

2.05 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_type.tsv

474 B

Paraclu

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_peaks.bed.gz

1.07 MB

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.tar.gz

1.98 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.tar.gz

798.63 kB

community PTBP1 all

iCount group

community PTBP1 all_grouped_reads.bed.gz

37.57 MB

community PTBP1 all_grouped_cdna.bed.gz

33.84 MB

community PTBP1 all_grouped_cdna.bedgraph

156.55 MB

iCount summary

community PTBP1 all_grouped_cdna_summary_type.tsv

450 B

community PTBP1 all_grouped_cdna_summary_gene.tsv

2.42 MB

community PTBP1 all_grouped_cdna_summary_subtype.tsv

1.03 kB

Paraclu

community PTBP1 all_grouped_cdna_peaks.bed.gz

581.97 kB

iCount RNA-maps

community PTBP1 all_grouped_cdna.tar.gz

1.75 MB

iCount annotate

community PTBP1 all_grouped_cdna_annotated.bedgraph

156.55 MB

community PTBP1 all_grouped_cdna_annotated.bed.gz

40.99 MB

PEKA

community PTBP1 all_grouped_cdna

Directory

community PTBP1 all_grouped_cdna.tar.gz

1.17 MB

iCount peaks

community PTBP1 all_grouped_cdna_peaks.bed.gz

9.36 MB

community PTBP1 all_grouped_cdna_peaks.bedgraph

31.47 MB

community PTBP1 all_grouped_cdna_scores.tsv.gz

107.81 MB

Copy of PTBP1_HEK293_1MIO_rep2_20190610_JU

K-mers

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.tar.gz

3.55 MB

iCount summary

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single_summary_type.tsv

471 B

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single_summary_gene.tsv

1.52 MB

iCount RNA-maps

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.tar.gz

772.89 kB

Paraclu

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single_peaks.bed.gz

95.09 kB

K-mers

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.tar.gz

3.47 MB

FASTQ file (single-end)

stderr.txt

1.26 kB

fastqc

Directory

ptbp1-hek293-1mio-rep2-20190610-ju_fastqc.zip

469.35 kB

ptbp1-hek293-1mio-rep2-20190610-ju.fastq.gz

315.10 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed.fastq.gz

309.34 MB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_fastqc.zip

439.24 kB

report.txt

703 B

iCount reads proxy

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped.fastq.gz

310.30 MB

stderr.txt

1.64 kB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_fastqc.zip

438.43 kB

fastqc

Directory

STAR

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed.bam.bai

20.56 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed.bam

444.17 MB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_unmapped.out.mate1.fastq.gz

310.30 MB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed.bw

105.75 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_stats.txt

1.78 kB

iCount xlsites

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_single.bed.gz

36.05 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_reads_single.bed.gz

37.80 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_singleAndMulti.bed.gz

74.26 kB

ptbp1-hek293-1mio-rep2-20190610-ju_trimmed_single.bedgraph

216 B

STAR

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

51.85 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped.bam.bai

4.01 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped.bam

414.02 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_SJ.out.tab

361.29 kB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_stats.txt

1.81 kB

iCount xlsites

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_singleAndMulti.bed.gz

11.76 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_skipped.bam

5.04 kB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_reads_single.bed.gz

8.57 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.bed.gz

7.42 MB

ptbp1-hek293-1mio-rep2-20190610-jufastqgz_unmapped_single.bedgraph

34.06 MB

Copy of 1MIO_Elisa

iCount RNA-maps

1MIO_Elisa_grouped_cdna.tar.gz

1.10 MB

Paraclu

1MIO_Elisa_grouped_cdna_peaks.bed.gz

242.06 kB

K-mers

1MIO_Elisa_grouped_cdna.tar.gz

9.89 MB

iCount group

1MIO_Elisa_grouped_cdna.bed.gz

19.70 MB

1MIO_Elisa_grouped_reads.bed.gz

22.02 MB

1MIO_Elisa_grouped_cdna.bedgraph

92.41 MB

iCount annotate

1MIO_Elisa_grouped_cdna_annotated.bedgraph

92.41 MB

1MIO_Elisa_grouped_cdna_annotated.bed.gz

24.15 MB

iCount summary

1MIO_Elisa_grouped_cdna_summary_type.tsv

441 B

1MIO_Elisa_grouped_cdna_summary_gene.tsv

1.87 MB

1MIO_Elisa_grouped_cdna_summary_subtype.tsv

1.00 kB

iCount peaks

1MIO_Elisa_grouped_cdna_peaks.bed.gz

374.03 kB

1MIO_Elisa_grouped_cdna_scores.tsv.gz

14.50 MB

1MIO_Elisa_grouped_cdna_peaks.bedgraph

1.22 MB

Copy of PTBP1_HEK293_PTBP1_1MIO_1_20190731_JU

iCount summary

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single_summary_gene.tsv

1.66 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single_summary_type.tsv

478 B

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

iCount reads proxy

fastqc

Directory

stderr.txt

1.69 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped.fastq.gz

965.97 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_fastqc.zip

572.86 kB

STAR

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped.bam.bai

3.76 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped.bam

1.62 GB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

661.66 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_stats.txt

1.81 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_SJ.out.tab

930.18 kB

iCount RNA-maps

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single.tar.gz

759.96 kB

STAR

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

965.97 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed.bam.bai

20.56 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_stats.txt

1.78 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed.bam

1.63 GB

FASTQ file (single-end)

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-1-20190731-ju.fastq.gz

1.12 GB

stderr.txt

1.32 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_fastqc.zip

552.98 kB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single.bedgraph

12.57 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_skipped.bam

6.25 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single.bed.gz

2.99 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_singleAndMulti.bed.gz

6.94 MB

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_reads_single.bed.gz

3.39 MB

Paraclu

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single_peaks.bed.gz

28.92 kB

K-mers

ptbp1-hek293-ptbp1-1mio-1-20190731-jufastqgz_unmapped_single.tar.gz

2.77 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed.fastq.gz

1.13 GB

report.txt

705 B

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_fastqc.zip

556.63 kB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_singleAndMulti.bed.gz

94.73 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_single.bedgraph

222 B

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_single.bed.gz

72.00 kB

ptbp1-hek293-ptbp1-1mio-1-20190731-ju_trimmed_reads_single.bed.gz

79.79 kB

Copy of PTBP1_HEK293_PTBP1_1MIO_3_20190731_JU

iCount RNA-maps

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single.tar.gz

758.22 kB

iCount reads proxy

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_fastqc.zip

467.10 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped.fastq.gz

635.22 MB

stderr.txt

1.69 kB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed.fastq.gz

976.63 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_fastqc.zip

472.62 kB

report.txt

705 B

Paraclu

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single_peaks.bed.gz

45.76 kB

K-mers

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single.tar.gz

3.02 MB

FASTQ file (single-end)

ptbp1-hek293-ptbp1-1mio-3-20190731-ju.fastq.gz

947.73 MB

fastqc

Directory

stderr.txt

1.32 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_fastqc.zip

470.63 kB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_single.bed.gz

71.78 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_singleAndMulti.bed.gz

88.97 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_single.bedgraph

222 B

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_reads_single.bed.gz

80.43 kB

STAR

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

206.09 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped.bam

1.03 GB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped.bam.bai

3.81 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_stats.txt

1.82 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_SJ.out.tab

920.26 kB

iCount summary

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single_summary_gene.tsv

1.62 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single_summary_type.tsv

478 B

STAR

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_stats.txt

1.78 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed.bam.bai

20.49 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed.bam

1.20 GB

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-ptbp1-1mio-3-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

635.22 MB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_reads_single.bed.gz

3.83 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single.bed.gz

3.37 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_skipped.bam

10.37 kB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_singleAndMulti.bed.gz

7.02 MB

ptbp1-hek293-ptbp1-1mio-3-20190731-jufastqgz_unmapped_single.bedgraph

14.31 MB

Copy of PTBP1_HEK293_PTBP1_1MIO_2_20190731_JU

iCount summary

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single_summary_type.tsv

483 B

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single_summary_gene.tsv

1.66 MB

K-mers

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single.tar.gz

3.30 MB

iCount reads proxy

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped.fastq.gz

876.14 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_fastqc.zip

472.64 kB

stderr.txt

1.69 kB

FASTQ file (single-end)

ptbp1-hek293-ptbp1-1mio-2-20190731-ju.fastq.gz

1.26 GB

fastqc

Directory

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_fastqc.zip

476.08 kB

stderr.txt

1.32 kB

Paraclu

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single_peaks.bed.gz

52.38 kB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_single.bed.gz

77.16 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_reads_single.bed.gz

86.71 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_single.bedgraph

222 B

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_singleAndMulti.bed.gz

102.67 kB

iCount RNA-maps

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single.tar.gz

744.33 kB

STAR

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

349.12 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped.bam.bai

3.90 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_stats.txt

1.82 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped.bam

1.40 GB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_SJ.out.tab

944.58 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

705 B

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed.fastq.gz

1.29 GB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_fastqc.zip

476.78 kB

STAR

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_stats.txt

1.79 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed_unmapped.out.mate1.fastq.gz

876.14 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed.bam

1.65 GB

ptbp1-hek293-ptbp1-1mio-2-20190731-ju_trimmed.bam.bai

20.56 kB

iCount xlsites

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_skipped.bam

8.27 kB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_singleAndMulti.bed.gz

7.23 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single.bed.gz

3.20 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_reads_single.bed.gz

3.64 MB

ptbp1-hek293-ptbp1-1mio-2-20190731-jufastqgz_unmapped_single.bedgraph

13.48 MB

Copy of 1MIO_Ina

iCount annotate

1MIO_Ina_grouped_cdna_annotated.bed.gz

11.31 MB

1MIO_Ina_grouped_cdna_annotated.bedgraph

38.30 MB

Paraclu

1MIO_Ina_grouped_cdna_peaks.bed.gz

151.23 kB

iCount group

1MIO_Ina_grouped_cdna.bed.gz

8.79 MB

1MIO_Ina_grouped_reads.bed.gz

10.00 MB

1MIO_Ina_grouped_cdna.bedgraph

38.30 MB

iCount peaks

1MIO_Ina_grouped_cdna_peaks.bed.gz

1.51 MB

1MIO_Ina_grouped_cdna_scores.tsv.gz

9.84 MB

1MIO_Ina_grouped_cdna_peaks.bedgraph

3.94 MB

K-mers

1MIO_Ina_grouped_cdna.tar.gz

9.87 MB

iCount summary

1MIO_Ina_grouped_cdna_summary_subtype.tsv

1.02 kB

1MIO_Ina_grouped_cdna_summary_type.tsv

449 B

1MIO_Ina_grouped_cdna_summary_gene.tsv

2.10 MB

iCount RNA-maps

1MIO_Ina_grouped_cdna.tar.gz

1.20 MB

Copy of PTBP1_HEK293_Ule 1MIO cells fastq trunc_20190612_JU

iCount xlsites

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_singleAndMulti.bed.gz

81.92 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_single.bed.gz

42.15 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_reads_single.bed.gz

42.61 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_single.bedgraph

250 B

iCount RNA-maps

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.tar.gz

713.37 kB

iCount xlsites

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.bed.gz

6.92 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_singleAndMulti.bed.gz

14.18 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_skipped.bam

4.35 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_reads_single.bed.gz

7.23 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.bedgraph

30.73 MB

Cutadapt (single-end)

fastqc

Directory

report.txt

718 B

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed.fastq.gz

163.65 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_fastqc.zip

405.13 kB

FASTQ file (single-end)

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju.fastq.gz

162.20 MB

fastqc

Directory

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_fastqc.zip

409.42 kB

stderr.txt

1.60 kB

K-mers

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.tar.gz

8.17 MB

iCount peaks

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_peaks.bed.gz

592.75 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_scores.tsv.gz

5.54 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_peaks.bedgraph

1.81 MB

iCount reads proxy

fastqc

Directory

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped.fastq.gz

163.95 MB

stderr.txt

1.97 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_fastqc.zip

407.07 kB

STAR

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped.bw

74.36 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

54.61 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped.bam

304.59 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped.bam.bai

3.99 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_SJ.out.tab

524.98 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_stats.txt

1.81 kB

iCount summary

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_summary_type.tsv

471 B

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_summary_gene.tsv

1.58 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_summary_subtype.tsv

1.03 kB

Paraclu

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single_peaks.bed.gz

161.33 kB

K-mers

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-jufastqgz_unmapped_single.tar.gz

5.09 MB

STAR

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_unmapped.out.mate1.fastq.gz

163.95 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed.bam.bai

20.56 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed.bam

238.43 MB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed.bw

105.62 kB

ptbp1-hek293-ule-1mio-cells-fastq-trunc-20190612-ju_trimmed_stats.txt

1.78 kB

Copy of PTBP1_HEK293_1MIO_rep1_20190610_JU

iCount RNA-maps

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.tar.gz

951.23 kB

FASTQ file (single-end)

fastqc

Directory

ptbp1-hek293-1mio-rep1-20190610-ju.fastq.gz

238.64 MB

ptbp1-hek293-1mio-rep1-20190610-ju_fastqc.zip

478.78 kB

stderr.txt

1.26 kB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed.fastq.gz

234.20 MB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_fastqc.zip

463.26 kB

report.txt

702 B

Paraclu

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single_peaks.bed.gz

191.11 kB

iCount summary

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single_summary_type.tsv

471 B

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single_summary_gene.tsv

1.72 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single_summary_subtype.tsv

1.04 kB

K-mers

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.tar.gz

4.44 MB

K-mers

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.tar.gz

4.70 MB

STAR

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_unmapped.out.mate1.fastq.gz

234.42 MB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed.bam.bai

20.56 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed.bam

352.59 MB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_stats.txt

1.78 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_SJ.out.tab

0 B

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed.bw

105.93 kB

iCount xlsites

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_skipped.bam

3.96 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_single.bed.gz

44.61 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_singleAndMulti.bed.gz

82.05 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_reads_single.bed.gz

46.01 kB

ptbp1-hek293-1mio-rep1-20190610-ju_trimmed_single.bedgraph

216 B

iCount reads proxy

fastqc

Directory

stderr.txt

1.64 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_fastqc.zip

459.89 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped.fastq.gz

234.42 MB

STAR

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped.bam

409.50 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_stats.txt

1.81 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_SJ.out.tab

459.71 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped.bam.bai

3.77 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

43.39 MB

iCount xlsites

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_skipped.bam

3.68 kB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_reads_single.bed.gz

14.27 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.bed.gz

13.04 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_singleAndMulti.bed.gz

21.89 MB

ptbp1-hek293-1mio-rep1-20190610-jufastqgz_unmapped_single.bedgraph

60.61 MB

Copy of Copy of PTBP1_Hela_WT_20130311_LUJH27a_1

Paraclu

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_peaks.bed.gz

1.11 MB

STAR

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_unmapped.out.mate1.fastq.gz

88.72 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_SJ.out.tab

1.10 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.bam.bai

3.15 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.bam

1014.88 MB

FASTQ file (CLIP)

ptbp1-hela-wt-20130311-lujh27a-1_fastqc.zip

315.27 kB

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1.fastq.gz

631.66 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.fastq.gz

644.15 MB

report.txt

668 B

STAR

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bam

712.09 MB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed_unmapped.out.mate1.fastq.gz

643.95 MB

ptbp1-hela-wt-20130311-lujh27a-1_trimmed.bw

105.86 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_singleAndMulti.bed.gz

74.19 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_reads_single.bed.gz

55.49 kB

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-1_premapped_to_ncRNAs_single.bed.gz

54.80 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.fastq.gz

643.95 MB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_singleAndMulti.bed.gz

66.48 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.bed.gz

46.99 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_skipped.bam

5.99 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.bedgraph

227.98 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_reads_single.bed.gz

48.43 MB

iCount summary

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_gene.tsv

2.03 MB

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single_summary_type.tsv

476 B

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome_single.tar.gz

1.94 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-1_mapped_to_genome.tar.gz

742.09 kB

Copy of Copy of PTBP1_Hela_WT_20130311_LUJH27a_2

iCount summary

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_subtype.tsv

1.05 kB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_gene.tsv

2.24 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_summary_type.tsv

481 B

STAR

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.bam.bai

3.12 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_SJ.out.tab

1.75 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.bam

1.61 GB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_unmapped.out.mate1.fastq.gz

155.80 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_stats.txt

1.81 kB

FASTQ file (CLIP)

ptbp1-hela-wt-20130311-lujh27a-2_fastqc.zip

321.13 kB

ptbp1-hela-wt-20130311-lujh27a-2.fastq.gz

1.02 GB

fastqc

Directory

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.fastq.gz

1.04 GB

report.txt

668 B

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_singleAndMulti.bed.gz

91.04 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_reads_single.bed.gz

65.83 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_single.bed.gz

65.02 kB

ptbp1-hela-wt-20130311-lujh27a-2_premapped_to_ncRNAs_single.bedgraph

212 B

iCLIP reads proxy

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.fastq.gz

1.04 GB

fastqc

Directory

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_skipped.bam

7.86 kB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.bed.gz

70.79 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.bedgraph

343.90 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_reads_single.bed.gz

72.97 MB

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_singleAndMulti.bed.gz

100.26 MB

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single.tar.gz

2.45 MB

Paraclu

ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome_single_peaks.bed.gz

1.79 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-2_mapped_to_genome.tar.gz

694.50 kB

STAR

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bw

106.02 kB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed_unmapped.out.mate1.fastq.gz

1.04 GB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bam

1.15 GB

ptbp1-hela-wt-20130311-lujh27a-2_trimmed.bam.bai

20.56 kB

Copy of Copy of PTBP1_Hela_WT_20130311_LUJH27a_3

Paraclu

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_peaks.bed.gz

576.18 kB

FASTQ file (CLIP)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-3_fastqc.zip

317.98 kB

ptbp1-hela-wt-20130311-lujh27a-3.fastq.gz

334.64 MB

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.fastq.gz

340.24 MB

report.txt

668 B

STAR

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_unmapped.out.mate1.fastq.gz

340.17 MB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bw

105.65 kB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed.bam

379.07 MB

ptbp1-hela-wt-20130311-lujh27a-3_trimmed_stats.txt

1.78 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_reads_single.bed.gz

46.14 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_single.bed.gz

45.50 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_singleAndMulti.bed.gz

60.79 kB

ptbp1-hela-wt-20130311-lujh27a-3_premapped_to_ncRNAs_single.bedgraph

212 B

iCLIP reads proxy

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.fastq.gz

340.17 MB

fastqc

Directory

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.bed.gz

25.62 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_singleAndMulti.bed.gz

37.02 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_skipped.bam

5.16 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_reads_single.bed.gz

26.61 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.bedgraph

123.93 MB

iCount summary

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_type.tsv

470 B

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_subtype.tsv

1.03 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single_summary_gene.tsv

1.82 MB

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_single.tar.gz

1.43 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.tar.gz

732.58 kB

STAR

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_unmapped.out.mate1.fastq.gz

51.45 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.bam.bai

3.35 MB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_stats.txt

1.81 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome_SJ.out.tab

627.08 kB

ptbp1-hela-wt-20130311-lujh27a-3_mapped_to_genome.bam

543.31 MB

Copy of Copy of PTBP1_Hela_WT_20130311_LUJH27a_4

iCount summary

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_subtype.tsv

1.04 kB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_gene.tsv

2.05 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_summary_type.tsv

474 B

FASTQ file (CLIP)

ptbp1-hela-wt-20130311-lujh27a-4_fastqc.zip

319.51 kB

ptbp1-hela-wt-20130311-lujh27a-4.fastq.gz

598.70 MB

fastqc

Directory

Cutadapt (single-end)

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.fastq.gz

610.29 MB

report.txt

668 B

STAR

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_SJ.out.tab

0 B

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bam

678.65 MB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_unmapped.out.mate1.fastq.gz

607.36 MB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bam.bai

20.56 kB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed_stats.txt

1.78 kB

ptbp1-hela-wt-20130311-lujh27a-4_trimmed.bw

105.94 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_single.bed.gz

57.38 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_skipped.bam

4.01 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_single.bedgraph

212 B

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_reads_single.bed.gz

57.99 kB

ptbp1-hela-wt-20130311-lujh27a-4_premapped_to_ncRNAs_singleAndMulti.bed.gz

76.75 kB

iCLIP reads proxy

fastqc

Directory

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.fastq.gz

607.36 MB

STAR

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_SJ.out.tab

1.14 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.bam

971.38 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.bam.bai

3.00 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_unmapped.out.mate1.fastq.gz

90.13 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_stats.txt

1.81 kB

iCount xlsites

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_skipped.bam

5.64 kB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.bed.gz

45.17 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_reads_single.bed.gz

46.49 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.bedgraph

218.94 MB

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_singleAndMulti.bed.gz

64.60 MB

Paraclu

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single_peaks.bed.gz

1.07 MB

iCount RNA-maps

ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome_single.tar.gz

1.98 MB

PEKA

4mer analysis of ptbp1-hela-wt-20130311-lujh27a-4_mapped_to_genome.tar.gz

798.63 kB