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Folder iconTDP-43_Fratta_Lab_iCLIP_Experiments

Rahul Arora
Feb. 13, 2020
TARDBP in mouse brain with ALS mutations

TDP43_20151221_JU2_Martina_Fratta.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.37 kB
TDP43_20151221_JU2_Martina_Fratta.fastq.gz
8.08 GB
TDP43_20151221_JU2_Martina_Fratta_fastqc.zip
450.86 kB

TARDBP_brain_brain_WTBL6_20151221_JU2

iCount summary
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single_summary_subtype.tsv
744 B
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single_summary_gene.tsv
20.10 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single_summary_type.tsv
399 B
iCount RNA-maps
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single.tar.gz
227.82 kB
Paraclu
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single_peaks.bed.gz
88 B
FASTQ file (single-end)
tardbp-brain-brain-wtbl6-20151221-ju2.fastq.gz
382.24 kB
fastqc
Directory
stderr.txt
847 B
tardbp-brain-brain-wtbl6-20151221-ju2_fastqc.zip
475.76 kB
K-mers
tardbp-brain-brain-wtbl6-20151221-ju2.tar.gz
137 B
Cutadapt (single-end)
fastqc
Directory
report.txt
672 B
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed.fastq.gz
381.40 kB
STAR
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
300.39 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed.bam
572.18 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_SJ.out.tab
1.75 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_stats.txt
1.78 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed.bam.bai
1.30 MB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed.bw
4.31 kB
iCount xlsites
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_skipped.bam
1.38 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_singleAndMulti.bed.gz
19.27 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single.bed.gz
5.09 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single.bedgraph
16.43 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_reads_single.bed.gz
5.49 kB

TARDBP_brain_embryo_brain_WTBL6_20151221_JU2_1

iCount summary
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_gene.tsv
1.69 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_type.tsv
439 B
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single.tar.gz
1.10 MB
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed.fastq.gz
219.14 MB
report.txt
682 B
STAR
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed.bam
326.69 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_unmapped.out.mate1.fastq.gz
37.82 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed.bam.bai
3.11 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_stats.txt
1.81 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_SJ.out.tab
625.24 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1.fastq.gz
215.31 MB
stderr.txt
1.56 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_fastqc.zip
427.79 kB
Paraclu
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single_peaks.bed.gz
178.61 kB
K-mers
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1.tar.gz
455.71 kB
iCount xlsites
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_skipped.bam
4.30 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single.bed.gz
11.85 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single.bedgraph
55.70 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_singleAndMulti.bed.gz
18.49 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_reads_single.bed.gz
12.82 MB

TARDBP_brain_embryo_brain_WTBL6_20151221_JU2_2

FASTQ file (single-end)
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2.fastq.gz
4.13 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_fastqc.zip
447.38 kB
fastqc
Directory
stderr.txt
1.56 kB
iCount RNA-maps
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single.tar.gz
428.50 kB
Paraclu
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single_peaks.bed.gz
696 B
K-mers
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2.tar.gz
123.87 kB
Cutadapt (single-end)
report.txt
681 B
fastqc
Directory
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed.fastq.gz
4.11 MB
STAR
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_unmapped.out.mate1.fastq.gz
1.01 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed.bam.bai
1.99 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed.bam
6.15 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_stats.txt
1.79 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_SJ.out.tab
14.65 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed.bw
5.05 kB
iCount xlsites
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_singleAndMulti.bed.gz
399.12 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single.bed.gz
254.09 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_skipped.bam
1.55 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_reads_single.bed.gz
274.98 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single.bedgraph
1007.43 kB
iCount summary
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single_summary_type.tsv
415 B
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single_summary_gene.tsv
582.71 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single_summary_subtype.tsv
910 B

TARDBP_brain_embryo_brain_mutTDP43_F210I_20151221_JU2_1

FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1.fastq.gz
163.52 MB
stderr.txt
1.73 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_fastqc.zip
452.90 kB
iCount RNA-maps
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single.tar.gz
994.32 kB
Paraclu
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single_peaks.bed.gz
117.61 kB
K-mers
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1.tar.gz
436.23 kB
Cutadapt (single-end)
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed.fastq.gz
166.40 MB
report.txt
691 B
fastqc
Directory
STAR
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed.bam.bai
3.08 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed.bam
277.55 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_stats.txt
1.81 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_SJ.out.tab
595.88 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_unmapped.out.mate1.fastq.gz
40.11 MB
iCount xlsites
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single.bed.gz
8.60 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_singleAndMulti.bed.gz
16.09 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_skipped.bam
3.56 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single.bedgraph
39.86 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_reads_single.bed.gz
9.27 MB
iCount summary
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single_summary_gene.tsv
1.68 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single_summary_type.tsv
437 B
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single_summary_subtype.tsv
1.00 kB

TARDBP_brain_embryo_brain_mutTDP43_F210I_20151221_JU2_2

iCount RNA-maps
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single.tar.gz
372.95 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2.fastq.gz
1.95 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_fastqc.zip
445.30 kB
stderr.txt
1.73 kB
Paraclu
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single_peaks.bed.gz
483 B
K-mers
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2.tar.gz
150 B
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed.fastq.gz
1.95 MB
report.txt
689 B
STAR
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed.bam.bai
1.68 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_unmapped.out.mate1.fastq.gz
518.15 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_stats.txt
1.79 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed.bw
4.49 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_SJ.out.tab
4.93 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed.bam
3.02 MB
iCount xlsites
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_skipped.bam
1.38 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single.bed.gz
117.13 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_reads_single.bed.gz
126.37 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single.bedgraph
447.02 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_singleAndMulti.bed.gz
200.59 kB
iCount summary
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single_summary_type.tsv
415 B
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single_summary_gene.tsv
389.90 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single_summary_subtype.tsv
908 B

TARDBP_brain_brain_mutTDP43_M323K_20151221_JU2_1

Paraclu
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single_peaks.bed.gz
5.46 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1.fastq.gz
67.51 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_fastqc.zip
479.29 kB
stderr.txt
1.60 kB
iCount RNA-maps
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single.tar.gz
404.53 kB
K-mers
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1.tar.gz
229.10 kB
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed.fastq.gz
61.57 MB
report.txt
684 B
STAR
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed.bam.bai
3.41 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_unmapped.out.mate1.fastq.gz
36.01 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed.bam
107.02 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_SJ.out.tab
139.08 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_stats.txt
1.80 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed.bw
11.65 kB
iCount xlsites
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single.bed.gz
412.14 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_reads_single.bed.gz
450.06 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single.bedgraph
1.60 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_skipped.bam
2.43 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_singleAndMulti.bed.gz
2.58 MB
iCount summary
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single_summary_type.tsv
421 B
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single_summary_subtype.tsv
986 B
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single_summary_gene.tsv
677.68 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
5.02 GB
demux_nomatch_fastqc.zip
452.27 kB

TARDBP_brain_embryo_brain_mIgG_20151221_JU2

iCount RNA-maps
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single.tar.gz
686.94 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-migg-20151221-ju2.fastq.gz
45.78 MB
stderr.txt
1.50 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_fastqc.zip
452.77 kB
Paraclu
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single_peaks.bed.gz
13.44 kB
K-mers
tardbp-brain-embryo-brain-migg-20151221-ju2.tar.gz
351.45 kB
Cutadapt (single-end)
report.txt
678 B
fastqc
Directory
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed.fastq.gz
46.53 MB
STAR
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
8.00 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed.bam.bai
3.53 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_stats.txt
1.80 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_SJ.out.tab
135.86 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed.bw
10.86 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed.bam
75.26 MB
iCount xlsites
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single.bed.gz
3.22 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_skipped.bam
1.67 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_reads_single.bed.gz
3.50 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_singleAndMulti.bed.gz
5.03 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single.bedgraph
14.55 MB
iCount summary
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single_summary_subtype.tsv
1009 B
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single_summary_gene.tsv
1.28 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single_summary_type.tsv
430 B

TARDBP_brain_embryo_brain_WTBL6_20151221_JU2

Paraclu
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single_peaks.bed.gz
133.20 kB
FASTQ file (single-end)
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_fastqc.zip
429.06 kB
fastqc
Directory
stderr.txt
1.52 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2.fastq.gz
264.71 MB
iCount summary
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single_summary_type.tsv
438 B
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single_summary_subtype.tsv
1.00 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single_summary_gene.tsv
1.75 MB
iCount RNA-maps
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single.tar.gz
1.23 MB
K-mers
tardbp-brain-embryo-brain-wtbl6-20151221-ju2.tar.gz
455.02 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed.fastq.gz
269.36 MB
STAR
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
49.73 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_stats.txt
1.81 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed.bam
408.23 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_SJ.out.tab
679.86 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed.bam.bai
3.09 MB
iCount xlsites
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_skipped.bam
5.09 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_singleAndMulti.bed.gz
20.28 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_reads_single.bed.gz
14.83 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single.bed.gz
13.71 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single.bedgraph
64.35 MB

TARDBP_brain_embryo_brain_mutTDP43_F210I_20151221_JU2

Paraclu
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single_peaks.bed.gz
235.02 kB
STAR
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
45.08 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_SJ.out.tab
787.58 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed.bam
375.73 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed.bam.bai
2.92 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_stats.txt
1.81 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2.fastq.gz
238.02 MB
stderr.txt
1.69 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_fastqc.zip
438.56 kB
iCount RNA-maps
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single.tar.gz
1.20 MB
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed.fastq.gz
241.83 MB
report.txt
689 B
iCount summary
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single_summary_type.tsv
441 B
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single_summary_subtype.tsv
1020 B
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single_summary_gene.tsv
1.77 MB
K-mers
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2.tar.gz
459.68 kB
iCount xlsites
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_singleAndMulti.bed.gz
21.05 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single.bed.gz
12.77 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_reads_single.bed.gz
13.76 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single.bedgraph
60.10 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_skipped.bam
3.75 kB

TARDBP_brain_brain_mIgG_20151221_JU2

Paraclu
tardbp-brain-brain-migg-20151221-ju2_trimmed_single_peaks.bed.gz
175 B
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-brain-migg-20151221-ju2.fastq.gz
1.38 MB
stderr.txt
1.36 kB
tardbp-brain-brain-migg-20151221-ju2_fastqc.zip
537.96 kB
iCount summary
tardbp-brain-brain-migg-20151221-ju2_trimmed_single_summary_subtype.tsv
819 B
tardbp-brain-brain-migg-20151221-ju2_trimmed_single_summary_gene.tsv
56.16 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_single_summary_type.tsv
406 B
iCount RNA-maps
tardbp-brain-brain-migg-20151221-ju2_trimmed_single.tar.gz
250.91 kB
K-mers
tardbp-brain-brain-migg-20151221-ju2.tar.gz
136 B
Cutadapt (single-end)
report.txt
671 B
fastqc
Directory
tardbp-brain-brain-migg-20151221-ju2_trimmed.fastq.gz
982.95 kB
STAR
tardbp-brain-brain-migg-20151221-ju2_trimmed.bam.bai
1.46 MB
tardbp-brain-brain-migg-20151221-ju2_trimmed.bw
4.50 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_SJ.out.tab
3.45 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed.bam
1.77 MB
tardbp-brain-brain-migg-20151221-ju2_trimmed_stats.txt
1.79 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
635.93 kB
iCount xlsites
tardbp-brain-brain-migg-20151221-ju2_trimmed_skipped.bam
1.38 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_single.bed.gz
15.36 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_singleAndMulti.bed.gz
82.63 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_reads_single.bed.gz
16.46 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_single.bedgraph
51.54 kB

TARDBP_brain_brain_WTBL6_20151221_JU2_1

FASTQ file (single-end)
fastqc
Directory
tardbp-brain-brain-wtbl6-20151221-ju2-1.fastq.gz
91.14 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_fastqc.zip
509.22 kB
stderr.txt
1.42 kB
iCount summary
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_type.tsv
426 B
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_subtype.tsv
991 B
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_gene.tsv
906.66 kB
iCount RNA-maps
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single.tar.gz
430.83 kB
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed.fastq.gz
85.31 MB
report.txt
675 B
Paraclu
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single_peaks.bed.gz
10.07 kB
K-mers
tardbp-brain-brain-wtbl6-20151221-ju2-1.tar.gz
254.67 kB
STAR
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed.bam.bai
3.59 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_unmapped.out.mate1.fastq.gz
52.34 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_SJ.out.tab
232.83 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed.bam
159.37 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_stats.txt
1.80 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed.bw
14.00 kB
iCount xlsites
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single.bed.gz
729.54 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_skipped.bam
2.46 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_reads_single.bed.gz
801.26 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single.bedgraph
2.93 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_singleAndMulti.bed.gz
4.36 MB

TARDBP_brain_brain_mutTDP43_M323K_20151221_JU2

iCount RNA-maps
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single.tar.gz
393.65 kB
FASTQ file (single-end)
tardbp-brain-brain-muttdp43-m323k-20151221-ju2.fastq.gz
33.23 MB
fastqc
Directory
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_fastqc.zip
477.86 kB
stderr.txt
1.56 kB
Cutadapt (single-end)
report.txt
681 B
fastqc
Directory
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed.fastq.gz
32.32 MB
K-mers
tardbp-brain-brain-muttdp43-m323k-20151221-ju2.tar.gz
145.97 kB
Paraclu
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single_peaks.bed.gz
2.43 kB
STAR
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed.bam.bai
3.03 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed.bam
57.36 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
18.83 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed.bw
9.50 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_stats.txt
1.80 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_SJ.out.tab
67.62 kB
iCount xlsites
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_skipped.bam
1.61 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_singleAndMulti.bed.gz
1.47 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single.bedgraph
907.43 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single.bed.gz
234.85 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_reads_single.bed.gz
256.65 kB
iCount summary
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single_summary_type.tsv
424 B
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single_summary_gene.tsv
500.71 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single_summary_subtype.tsv
983 B

No Sample

STAR
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed.bam
326.69 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_unmapped.out.mate1.fastq.gz
37.82 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed.bam.bai
3.11 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_stats.txt
1.81 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_SJ.out.tab
625.24 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-brain-wtbl6-20151221-ju2-1.fastq.gz
91.14 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_fastqc.zip
509.22 kB
stderr.txt
1.42 kB
iCount RNA-maps
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single.tar.gz
393.65 kB
iCount summary
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_type.tsv
426 B
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_subtype.tsv
991 B
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_gene.tsv
906.66 kB
iCount RNA-maps
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single.tar.gz
430.83 kB
iCount summary
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single_summary_subtype.tsv
744 B
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single_summary_gene.tsv
20.10 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single_summary_type.tsv
399 B
iCount RNA-maps
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single.tar.gz
227.82 kB
Paraclu
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single_peaks.bed.gz
88 B
Paraclu
tardbp-brain-brain-migg-20151221-ju2_trimmed_single_peaks.bed.gz
175 B
Paraclu
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single_peaks.bed.gz
235.02 kB
iCount summary
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_gene.tsv
1.69 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_type.tsv
439 B
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single.tar.gz
1.10 MB
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed.fastq.gz
85.31 MB
report.txt
675 B
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed.fastq.gz
219.14 MB
report.txt
682 B
STAR
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
45.08 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_SJ.out.tab
787.58 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed.bam
375.73 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed.bam.bai
2.92 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_stats.txt
1.81 kB
Paraclu
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single_peaks.bed.gz
5.46 kB
iCount RNA-maps
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single.tar.gz
372.95 kB
Paraclu
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single_peaks.bed.gz
133.20 kB
iCount RNA-maps
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single.tar.gz
686.94 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.37 kB
TDP43_20151221_JU2_Martina_Fratta.fastq.gz
8.08 GB
TDP43_20151221_JU2_Martina_Fratta_fastqc.zip
450.86 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2.fastq.gz
238.02 MB
stderr.txt
1.69 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_fastqc.zip
438.56 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-migg-20151221-ju2.fastq.gz
45.78 MB
stderr.txt
1.50 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_fastqc.zip
452.77 kB
FASTQ file (single-end)
tardbp-brain-brain-muttdp43-m323k-20151221-ju2.fastq.gz
33.23 MB
fastqc
Directory
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_fastqc.zip
477.86 kB
stderr.txt
1.56 kB
Upload iCount sample annotation
annotation_TARDBP_brain_20151221_JU2.xlsx
14.75 kB
annotation_TARDBP_brain_20151221_JU2.tab.gz
702 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
999 B
FASTQ file (single-end)
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2.fastq.gz
4.13 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_fastqc.zip
447.38 kB
fastqc
Directory
stderr.txt
1.56 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1.fastq.gz
215.31 MB
stderr.txt
1.56 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_fastqc.zip
427.79 kB
FASTQ file (single-end)
tardbp-brain-brain-wtbl6-20151221-ju2.fastq.gz
382.24 kB
fastqc
Directory
stderr.txt
847 B
tardbp-brain-brain-wtbl6-20151221-ju2_fastqc.zip
475.76 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1.fastq.gz
163.52 MB
stderr.txt
1.73 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_fastqc.zip
452.90 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
5.02 GB
demux_nomatch_fastqc.zip
452.27 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2.fastq.gz
1.95 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_fastqc.zip
445.30 kB
stderr.txt
1.73 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1.fastq.gz
67.51 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_fastqc.zip
479.29 kB
stderr.txt
1.60 kB
iCount RNA-maps
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single.tar.gz
404.53 kB
K-mers
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1.tar.gz
229.10 kB
Cutadapt (single-end)
report.txt
681 B
fastqc
Directory
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed.fastq.gz
32.32 MB
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed.fastq.gz
61.57 MB
report.txt
684 B
K-mers
tardbp-brain-brain-muttdp43-m323k-20151221-ju2.tar.gz
145.97 kB
Paraclu
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single_peaks.bed.gz
2.43 kB
Paraclu
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single_peaks.bed.gz
10.07 kB
K-mers
tardbp-brain-brain-wtbl6-20151221-ju2-1.tar.gz
254.67 kB
K-mers
tardbp-brain-brain-wtbl6-20151221-ju2.tar.gz
137 B
FASTQ file (single-end)
fastqc
Directory
tardbp-brain-brain-migg-20151221-ju2.fastq.gz
1.38 MB
stderr.txt
1.36 kB
tardbp-brain-brain-migg-20151221-ju2_fastqc.zip
537.96 kB
iCount summary
tardbp-brain-brain-migg-20151221-ju2_trimmed_single_summary_subtype.tsv
819 B
tardbp-brain-brain-migg-20151221-ju2_trimmed_single_summary_gene.tsv
56.16 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_single_summary_type.tsv
406 B
iCount RNA-maps
tardbp-brain-brain-migg-20151221-ju2_trimmed_single.tar.gz
250.91 kB
K-mers
tardbp-brain-brain-migg-20151221-ju2.tar.gz
136 B
Paraclu
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single_peaks.bed.gz
483 B
iCount RNA-maps
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single.tar.gz
428.50 kB
K-mers
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2.tar.gz
150 B
iCount RNA-maps
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single.tar.gz
994.32 kB
Paraclu
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single_peaks.bed.gz
117.61 kB
K-mers
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1.tar.gz
436.23 kB
iCount RNA-maps
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single.tar.gz
1.20 MB
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed.fastq.gz
241.83 MB
report.txt
689 B
iCount summary
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single_summary_type.tsv
441 B
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single_summary_subtype.tsv
1020 B
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single_summary_gene.tsv
1.77 MB
K-mers
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2.tar.gz
459.68 kB
Paraclu
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single_peaks.bed.gz
696 B
K-mers
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2.tar.gz
123.87 kB
Paraclu
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single_peaks.bed.gz
178.61 kB
K-mers
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1.tar.gz
455.71 kB
FASTQ file (single-end)
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_fastqc.zip
429.06 kB
fastqc
Directory
stderr.txt
1.52 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2.fastq.gz
264.71 MB
iCount summary
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single_summary_type.tsv
438 B
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single_summary_subtype.tsv
1.00 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single_summary_gene.tsv
1.75 MB
iCount RNA-maps
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single.tar.gz
1.23 MB
K-mers
tardbp-brain-embryo-brain-wtbl6-20151221-ju2.tar.gz
455.02 kB
Paraclu
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single_peaks.bed.gz
13.44 kB
K-mers
tardbp-brain-embryo-brain-migg-20151221-ju2.tar.gz
351.45 kB
Cutadapt (single-end)
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed.fastq.gz
166.40 MB
report.txt
691 B
fastqc
Directory
Cutadapt (single-end)
fastqc
Directory
report.txt
672 B
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed.fastq.gz
381.40 kB
STAR
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed.bam.bai
3.41 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_unmapped.out.mate1.fastq.gz
36.01 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed.bam
107.02 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_SJ.out.tab
139.08 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_stats.txt
1.80 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed.bw
11.65 kB
STAR
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed.bam.bai
3.03 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed.bam
57.36 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
18.83 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed.bw
9.50 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_stats.txt
1.80 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_SJ.out.tab
67.62 kB
STAR
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed.bam.bai
3.59 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_unmapped.out.mate1.fastq.gz
52.34 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_SJ.out.tab
232.83 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed.bam
159.37 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_stats.txt
1.80 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed.bw
14.00 kB
Cutadapt (single-end)
report.txt
671 B
fastqc
Directory
tardbp-brain-brain-migg-20151221-ju2_trimmed.fastq.gz
982.95 kB
Cutadapt (single-end)
report.txt
681 B
fastqc
Directory
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed.fastq.gz
4.11 MB
Cutadapt (single-end)
fastqc
Directory
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed.fastq.gz
1.95 MB
report.txt
689 B
Cutadapt (single-end)
report.txt
678 B
fastqc
Directory
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed.fastq.gz
46.53 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed.fastq.gz
269.36 MB
STAR
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
300.39 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed.bam
572.18 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_SJ.out.tab
1.75 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_stats.txt
1.78 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed.bam.bai
1.30 MB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed.bw
4.31 kB
STAR
tardbp-brain-brain-migg-20151221-ju2_trimmed.bam.bai
1.46 MB
tardbp-brain-brain-migg-20151221-ju2_trimmed.bw
4.50 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_SJ.out.tab
3.45 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed.bam
1.77 MB
tardbp-brain-brain-migg-20151221-ju2_trimmed_stats.txt
1.79 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
635.93 kB
iCount xlsites
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single.bed.gz
412.14 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_reads_single.bed.gz
450.06 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single.bedgraph
1.60 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_skipped.bam
2.43 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_singleAndMulti.bed.gz
2.58 MB
STAR
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed.bam.bai
1.68 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_unmapped.out.mate1.fastq.gz
518.15 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_stats.txt
1.79 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed.bw
4.49 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_SJ.out.tab
4.93 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed.bam
3.02 MB
iCount xlsites
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_skipped.bam
1.61 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_singleAndMulti.bed.gz
1.47 MB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single.bedgraph
907.43 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single.bed.gz
234.85 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_reads_single.bed.gz
256.65 kB
STAR
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_unmapped.out.mate1.fastq.gz
1.01 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed.bam.bai
1.99 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed.bam
6.15 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_stats.txt
1.79 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_SJ.out.tab
14.65 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed.bw
5.05 kB
STAR
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
8.00 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed.bam.bai
3.53 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_stats.txt
1.80 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_SJ.out.tab
135.86 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed.bw
10.86 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed.bam
75.26 MB
STAR
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed.bam.bai
3.08 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed.bam
277.55 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_stats.txt
1.81 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_SJ.out.tab
595.88 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_unmapped.out.mate1.fastq.gz
40.11 MB
iCount xlsites
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_skipped.bam
1.38 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_singleAndMulti.bed.gz
19.27 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single.bed.gz
5.09 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_single.bedgraph
16.43 kB
tardbp-brain-brain-wtbl6-20151221-ju2_trimmed_reads_single.bed.gz
5.49 kB
iCount xlsites
tardbp-brain-brain-migg-20151221-ju2_trimmed_skipped.bam
1.38 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_single.bed.gz
15.36 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_singleAndMulti.bed.gz
82.63 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_reads_single.bed.gz
16.46 kB
tardbp-brain-brain-migg-20151221-ju2_trimmed_single.bedgraph
51.54 kB
iCount summary
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single_summary_type.tsv
421 B
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single_summary_subtype.tsv
986 B
tardbp-brain-brain-muttdp43-m323k-20151221-ju2-1_trimmed_single_summary_gene.tsv
677.68 kB
STAR
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_unmapped.out.mate1.fastq.gz
49.73 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_stats.txt
1.81 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed.bam
408.23 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_SJ.out.tab
679.86 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed.bam.bai
3.09 MB
iCount xlsites
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_skipped.bam
1.38 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single.bed.gz
117.13 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_reads_single.bed.gz
126.37 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single.bedgraph
447.02 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_singleAndMulti.bed.gz
200.59 kB
iCount summary
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single_summary_type.tsv
424 B
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single_summary_gene.tsv
500.71 kB
tardbp-brain-brain-muttdp43-m323k-20151221-ju2_trimmed_single_summary_subtype.tsv
983 B
iCount xlsites
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_singleAndMulti.bed.gz
399.12 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single.bed.gz
254.09 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_skipped.bam
1.55 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_reads_single.bed.gz
274.98 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single.bedgraph
1007.43 kB
iCount xlsites
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single.bed.gz
729.54 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_skipped.bam
2.46 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_reads_single.bed.gz
801.26 kB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_single.bedgraph
2.93 MB
tardbp-brain-brain-wtbl6-20151221-ju2-1_trimmed_singleAndMulti.bed.gz
4.36 MB
iCount xlsites
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single.bed.gz
3.22 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_skipped.bam
1.67 kB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_reads_single.bed.gz
3.50 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_singleAndMulti.bed.gz
5.03 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single.bedgraph
14.55 MB
iCount summary
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single_summary_subtype.tsv
1009 B
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single_summary_gene.tsv
1.28 MB
tardbp-brain-embryo-brain-migg-20151221-ju2_trimmed_single_summary_type.tsv
430 B
iCount summary
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single_summary_type.tsv
415 B
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single_summary_gene.tsv
389.90 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-2_trimmed_single_summary_subtype.tsv
908 B
iCount xlsites
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_skipped.bam
4.30 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single.bed.gz
11.85 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_single.bedgraph
55.70 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_singleAndMulti.bed.gz
18.49 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-1_trimmed_reads_single.bed.gz
12.82 MB
iCount xlsites
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_skipped.bam
5.09 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_singleAndMulti.bed.gz
20.28 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_reads_single.bed.gz
14.83 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single.bed.gz
13.71 MB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2_trimmed_single.bedgraph
64.35 MB
iCount xlsites
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single.bed.gz
8.60 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_singleAndMulti.bed.gz
16.09 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_skipped.bam
3.56 kB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single.bedgraph
39.86 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_reads_single.bed.gz
9.27 MB
iCount xlsites
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_singleAndMulti.bed.gz
21.05 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single.bed.gz
12.77 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_reads_single.bed.gz
13.76 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_single.bedgraph
60.10 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2_trimmed_skipped.bam
3.75 kB
iCount summary
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single_summary_type.tsv
415 B
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single_summary_gene.tsv
582.71 kB
tardbp-brain-embryo-brain-wtbl6-20151221-ju2-2_trimmed_single_summary_subtype.tsv
910 B
iCount summary
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single_summary_gene.tsv
1.68 MB
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single_summary_type.tsv
437 B
tardbp-brain-embryo-brain-muttdp43-f210i-20151221-ju2-1_trimmed_single_summary_subtype.tsv
1.00 kB