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Folder iconCPSF30 and Wdr33 bind AAUAAA

Rahul Arora
Feb. 4, 2020
AAUAAA is the most highly conserved motif in eukaryotic mRNA polyadenylation sites and, in mammals, is specifically recognized by the multisubunit CPSF (cleavage and polyadenylation specificity factor) complex. Despite its critical functions in mRNA 3' end formation, the molecular basis for CPSF-AAUAAA interaction remains poorly defined. The CPSF subunit CPSF160 has been implicated in AAUAAA recognition, but direct evidence has been lacking. Using in vitro and in vivo assays, we unexpectedly found that CPSF subunits CPSF30 and Wdr33 directly contact AAUAAA. Importantly, the CPSF30-RNA interaction is essential for mRNA 3' processing and is primarily mediated by its zinc fingers 2 and 3, which are specifically targeted by the influenza protein NS1A to suppress host mRNA 3' processing. Our data suggest that AAUAAA recognition in mammalian mRNA 3' processing is more complex than previously thought and involves multiple protein-RNA interactions.

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
257.01 MB
demux_nomatch_fastqc.zip
353.13 kB
stderr.txt
935 B

20130422_LUIna1_CPSF30_and_Wdr33_bind_mRNA.fastq.gz

FASTQ file (single-end)
stderr.txt
1.48 kB
fastqc
Directory
20130422_LUIna1_CPSF30_and_Wdr33_bind_mRNA_fastqc.zip
399.66 kB
20130422_LUIna1_CPSF30_and_Wdr33_bind_mRNA.fastq.gz
7.91 GB

CPSF1_HelaFlp_nGFP_60mins4SU_U_20130422_LUIna1

K-mers
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1
Directory
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1.tar.gz
500.04 kB
iCount xlsites
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_singleAndMulti.bed.gz
52.80 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single.bed.gz
21.85 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_reads_single.bed.gz
25.85 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_skipped.bam
13.02 kB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single.bedgraph
98.39 MB
iCount summary
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single_summary_subtype.tsv
1.02 kB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single_summary_gene.tsv
2.61 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single_summary_type.tsv
447 B
FASTQ file (single-end)
stderr.txt
1.67 kB
fastqc
Directory
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1.fastq.gz
2.94 GB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_fastqc.zip
328.21 kB
Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed.fastq.gz
2.99 GB
iCount RNA-maps
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single.tar.gz
2.15 MB
Paraclu
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single_peaks.bed.gz
74.04 kB
STAR
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
1.32 GB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed.bam.bai
3.80 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed.bam
4.01 GB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_SJ.out.tab
5.06 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_stats.txt
1.82 kB

CPSF1_HelaFlp_pA_beads_NoAb_U_20130422_LUIna1

FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1.fastq.gz
99.97 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_fastqc.zip
346.32 kB
stderr.txt
1.65 kB
Paraclu
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single_peaks.bed.gz
1.30 kB
iCount xlsites
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_reads_single.bed.gz
780.67 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single.bed.gz
660.93 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single.bedgraph
2.58 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_skipped.bam
2.90 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_singleAndMulti.bed.gz
1.67 MB
iCount summary
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single_summary_type.tsv
431 B
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single_summary_subtype.tsv
999 B
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single_summary_gene.tsv
1.02 MB
iCount RNA-maps
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single.tar.gz
592.60 kB
K-mers
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1.tar.gz
314.28 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1
Directory
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed.fastq.gz
100.58 MB
STAR
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed.bam
198.48 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed.bam.bai
3.26 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_stats.txt
1.81 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
25.61 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_SJ.out.tab
114.91 kB

CPSF1_HelaFlp_nGFP_30mins4SU_U_20130422_LUIna1

FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1.fastq.gz
2.55 GB
stderr.txt
1.67 kB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_fastqc.zip
329.38 kB
STAR
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
1.14 GB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_stats.txt
1.82 kB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed.bam.bai
3.75 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed.bam
3.72 GB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_SJ.out.tab
6.26 MB
iCount xlsites
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_reads_single.bed.gz
24.63 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single.bed.gz
21.03 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_skipped.bam
7.97 kB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_singleAndMulti.bed.gz
56.93 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single.bedgraph
93.79 MB
iCount summary
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single_summary_gene.tsv
2.73 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single_summary_type.tsv
449 B
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single_summary_subtype.tsv
1.02 kB
Paraclu
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single_peaks.bed.gz
45.65 kB
K-mers
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1
Directory
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1.tar.gz
481.19 kB
iCount RNA-maps
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single.tar.gz
2.05 MB
Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed.fastq.gz
2.59 GB

CPSF1_HelaFlp_nGFP_60mins4SU_L_20130422_LUIna1

iCount RNA-maps
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single.tar.gz
483.78 kB
FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_fastqc.zip
338.99 kB
stderr.txt
1.67 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1.fastq.gz
36.23 MB
STAR
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
15.13 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed.bam
54.24 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_stats.txt
1.80 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed.bam.bai
3.13 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_SJ.out.tab
78.89 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed.bw
26.67 kB
iCount xlsites
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_skipped.bam
2.90 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_singleAndMulti.bed.gz
1.10 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_reads_single.bed.gz
419.52 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single.bedgraph
1.35 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single.bed.gz
362.54 kB
iCount summary
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single_summary_gene.tsv
869.84 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single_summary_type.tsv
426 B
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single_summary_subtype.tsv
992 B
Paraclu
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single_peaks.bed.gz
192 B
K-mers
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1.tar.gz
146.65 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1
Directory
Cutadapt (single-end)
fastqc
Directory
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed.fastq.gz
35.11 MB
report.txt
682 B

No Sample

STAR
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_stats.txt
1.80 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
15.13 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed.bam
54.24 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed.bam.bai
3.13 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_SJ.out.tab
78.89 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed.bw
26.67 kB
iCount summary
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single_summary_type.tsv
411 B
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single_summary_gene.tsv
73.79 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single_summary_subtype.tsv
830 B
iCount RNA-maps
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single.tar.gz
483.78 kB
FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1.fastq.gz
2.55 GB
stderr.txt
1.67 kB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_fastqc.zip
329.38 kB
Paraclu
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single_peaks.bed.gz
206 B
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
257.01 MB
demux_nomatch_fastqc.zip
353.13 kB
stderr.txt
935 B
K-mers
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1
Directory
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1.tar.gz
500.04 kB
FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_fastqc.zip
338.99 kB
stderr.txt
1.67 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1.fastq.gz
36.23 MB
FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1.fastq.gz
99.97 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_fastqc.zip
346.32 kB
stderr.txt
1.65 kB
STAR
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
1.14 GB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_stats.txt
1.82 kB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed.bam.bai
3.75 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed.bam
3.72 GB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_SJ.out.tab
6.26 MB
Paraclu
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single_peaks.bed.gz
1.30 kB
iCount xlsites
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_reads_single.bed.gz
780.67 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single.bed.gz
660.93 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single.bedgraph
2.58 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_skipped.bam
2.90 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_singleAndMulti.bed.gz
1.67 MB
iCount xlsites
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single.bed.gz
12.20 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_skipped.bam
2.90 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_reads_single.bed.gz
13.99 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_singleAndMulti.bed.gz
64.65 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single.bedgraph
39.82 kB
iCount xlsites
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single.bed.gz
2.79 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_singleAndMulti.bed.gz
8.63 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_skipped.bam
5.53 kB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_reads_single.bed.gz
3.27 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single.bedgraph
11.63 MB
iCount xlsites
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_skipped.bam
2.90 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_singleAndMulti.bed.gz
1.10 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_reads_single.bed.gz
419.52 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single.bedgraph
1.35 MB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single.bed.gz
362.54 kB
iCount xlsites
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_reads_single.bed.gz
24.63 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single.bed.gz
21.03 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_skipped.bam
7.97 kB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_singleAndMulti.bed.gz
56.93 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single.bedgraph
93.79 MB
iCount xlsites
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_singleAndMulti.bed.gz
52.80 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single.bed.gz
21.85 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_reads_single.bed.gz
25.85 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_skipped.bam
13.02 kB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single.bedgraph
98.39 MB
iCount summary
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single_summary_type.tsv
431 B
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single_summary_subtype.tsv
999 B
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single_summary_gene.tsv
1.02 MB
iCount RNA-maps
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_single.tar.gz
592.60 kB
iCount summary
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single_summary_gene.tsv
1.81 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single_summary_type.tsv
438 B
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single_summary_subtype.tsv
1019 B
iCount summary
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single_summary_gene.tsv
869.84 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single_summary_type.tsv
426 B
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single_summary_subtype.tsv
992 B
Paraclu
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed_single_peaks.bed.gz
192 B
iCount summary
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single_summary_gene.tsv
2.73 MB
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single_summary_type.tsv
449 B
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single_summary_subtype.tsv
1.02 kB
Paraclu
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single_peaks.bed.gz
45.65 kB
iCount summary
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single_summary_subtype.tsv
1.02 kB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single_summary_gene.tsv
2.61 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single_summary_type.tsv
447 B
K-mers
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1.tar.gz
146 B
K-mers
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1.tar.gz
314.28 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1
Directory
K-mers
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1
Directory
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1.tar.gz
359.75 kB
Upload iCount sample annotation
20130422_LUIna1_annotation_sheet.tab.gz
961 B
20130422_LUIna1_annotation_sheet.xlsx
15.18 kB
FASTQ file (single-end)
stderr.txt
1.48 kB
fastqc
Directory
20130422_LUIna1_CPSF30_and_Wdr33_bind_mRNA_fastqc.zip
399.66 kB
20130422_LUIna1_CPSF30_and_Wdr33_bind_mRNA.fastq.gz
7.91 GB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
583 B
K-mers
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1
Directory
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1.tar.gz
481.19 kB
FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1.fastq.gz
357.99 MB
stderr.txt
1.67 kB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_fastqc.zip
323.74 kB
FASTQ file (single-end)
stderr.txt
1.67 kB
fastqc
Directory
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1.fastq.gz
2.94 GB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_fastqc.zip
328.21 kB
FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1.fastq.gz
4.20 MB
stderr.txt
1.65 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_fastqc.zip
413.79 kB
iCount RNA-maps
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single.tar.gz
294.45 kB
iCount RNA-maps
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed_single.tar.gz
2.05 MB
iCount RNA-maps
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single.tar.gz
887.48 kB
Paraclu
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single_peaks.bed.gz
1.02 kB
Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed.fastq.gz
2.99 GB
iCount RNA-maps
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single.tar.gz
2.15 MB
Paraclu
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_single_peaks.bed.gz
74.04 kB
K-mers
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1.tar.gz
146.65 kB
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1
Directory
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed.fastq.gz
100.58 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed.fastq.gz
2.52 MB
Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
cpsf1-helaflp-ngfp-30mins4su-u-20130422-luina1_trimmed.fastq.gz
2.59 GB
Cutadapt (single-end)
fastqc
Directory
report.txt
682 B
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed.fastq.gz
362.06 MB
Cutadapt (single-end)
fastqc
Directory
cpsf1-helaflp-ngfp-60mins4su-l-20130422-luina1_trimmed.fastq.gz
35.11 MB
report.txt
682 B
STAR
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed.bam
555.00 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
172.65 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed.bam.bai
3.43 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_stats.txt
1.81 kB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_SJ.out.tab
994.71 kB
STAR
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed.bam
198.48 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed.bam.bai
3.26 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_stats.txt
1.81 kB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
25.61 MB
cpsf1-helaflp-pa-beads-noab-u-20130422-luina1_trimmed_SJ.out.tab
114.91 kB
STAR
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed.bam
7.68 MB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed.bam.bai
1.50 MB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed.bw
18.87 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_stats.txt
1.79 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
769.85 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_SJ.out.tab
2.60 kB
STAR
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
1.32 GB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed.bam.bai
3.80 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed.bam
4.01 GB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_SJ.out.tab
5.06 MB
cpsf1-helaflp-ngfp-60mins4su-u-20130422-luina1_trimmed_stats.txt
1.82 kB

CPSF1_HelaFlp_nGFP_30mins4SU_L_20130422_LUIna1

iCount xlsites
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single.bed.gz
2.79 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_singleAndMulti.bed.gz
8.63 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_skipped.bam
5.53 kB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_reads_single.bed.gz
3.27 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single.bedgraph
11.63 MB
iCount summary
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single_summary_gene.tsv
1.81 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single_summary_type.tsv
438 B
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single_summary_subtype.tsv
1019 B
K-mers
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1
Directory
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1.tar.gz
359.75 kB
FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1.fastq.gz
357.99 MB
stderr.txt
1.67 kB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_fastqc.zip
323.74 kB
iCount RNA-maps
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single.tar.gz
887.48 kB
Paraclu
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_single_peaks.bed.gz
1.02 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
682 B
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed.fastq.gz
362.06 MB
STAR
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed.bam
555.00 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
172.65 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed.bam.bai
3.43 MB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_stats.txt
1.81 kB
cpsf1-helaflp-ngfp-30mins4su-l-20130422-luina1_trimmed_SJ.out.tab
994.71 kB

CPSF1_HelaFlp_pA_beads_NoAb_L_20130422_LUIna1

iCount summary
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single_summary_type.tsv
411 B
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single_summary_gene.tsv
73.79 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single_summary_subtype.tsv
830 B
Paraclu
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single_peaks.bed.gz
206 B
iCount xlsites
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single.bed.gz
12.20 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_skipped.bam
2.90 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_reads_single.bed.gz
13.99 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_singleAndMulti.bed.gz
64.65 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single.bedgraph
39.82 kB
K-mers
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1.tar.gz
146 B
FASTQ file (single-end)
fastqc
Directory
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1.fastq.gz
4.20 MB
stderr.txt
1.65 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_fastqc.zip
413.79 kB
iCount RNA-maps
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_single.tar.gz
294.45 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed.fastq.gz
2.52 MB
STAR
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed.bam
7.68 MB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed.bam.bai
1.50 MB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed.bw
18.87 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_stats.txt
1.79 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_unmapped.out.mate1.fastq.gz
769.85 kB
cpsf1-helaflp-pa-beads-noab-l-20130422-luina1_trimmed_SJ.out.tab
2.60 kB