Back to Archive

Folder iconRNA binding ensures encapsidation of APOBEC3 proteins by HIV-1

Rahul Arora
Feb. 4, 2020
The apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3 (APOBEC3) proteins are cell-encoded cytidine deaminases, some of which, such as APOBEC3G (A3G) and APOBEC3F (A3F), act as potent human immunodeficiency virus type-1 (HIV-1) restriction factors. These proteins require packaging into HIV-1 particles to exert their antiviral activities, but the molecular mechanism by which this occurs is incompletely understood. The nucleocapsid (NC) region of HIV-1 Gag is required for efficient incorporation of A3G and A3F, and the interaction between A3G and NC has previously been shown to be RNA-dependent. Here, we address this issue in detail by first determining which RNAs are able to bind to A3G and A3F in HV-1 infected cells, as well as in cell-free virions, using the unbiased individual-nucleotide resolution UV cross-linking and immunoprecipitation (iCLIP) method. We show that A3G and A3F bind many different types of RNA, including HIV-1 RNA, cellular mRNAs and small non-coding RNAs such as the Y or 7SL RNAs. Interestingly, A3G/F incorporation is unaffected when the levels of packaged HIV-1 genomic RNA (gRNA) and 7SL RNA are reduced, implying that these RNAs are not essential for efficient A3G/F packaging. Confirming earlier work, HIV-1 particles formed with Gag lacking the NC domain (Gag ΔNC) fail to encapsidate A3G/F. Here, we exploit this system by demonstrating that the addition of an assortment of heterologous RNA-binding proteins and domains to Gag ΔNC efficiently restored A3G/F packaging, indicating that A3G and A3F have the ability to engage multiple RNAs to ensure viral encapsidation. We propose that the rather indiscriminate RNA binding characteristics of A3G and A3F promote functionality by enabling recruitment into a wide range of retroviral particles whose packaged RNA genomes comprise divergent sequences.

APOBEC3F_HIV IIIB_nT7_packaged_protein_in_virions_20111026_LUe43

FASTQ file (single-end)
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43.fastq.gz
86.28 MB
stderr.txt
1.91 kB
fastqc
Directory
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_fastqc.zip
399.80 kB
iCount summary
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_type.tsv
426 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_subtype.tsv
990 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_gene.tsv
609.75 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
699 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.fastq.gz
88.29 MB
Paraclu
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_peaks.bed.gz
14.05 kB
iCount RNA-maps
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.tar.gz
402.57 kB
STAR
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bam
220.44 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bam.bai
3.57 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_unmapped.out.mate1.fastq.gz
51.85 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bw
25.82 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_stats.txt
1.81 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_SJ.out.tab
114.07 kB
iCount xlsites
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_skipped.bam
2.90 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_singleAndMulti.bed.gz
1.82 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_reads_single.bed.gz
307.23 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.bed.gz
286.28 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.bedgraph
1.03 MB
K-mers
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43
Directory
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43.tar.gz
152.47 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch_fastqc.zip
463.18 kB
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
22.75 MB

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
18.45 MB
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
445.39 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
34.18 MB
demux_nomatch_fastqc.zip
413.05 kB
stderr.txt
935 B

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
116.86 MB
demux_nomatch_fastqc.zip
566.04 kB
stderr.txt
935 B

20110921_LUe41_SLX-4295.CRIRUN_701.s_8.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20110921_LUe41_SLX-4295.CRIRUN_701.s_8.sequence_fastqc.zip
464.76 kB
20110921_LUe41_SLX-4295.CRIRUN_701.s_8.sequence.fastq.gz
386.25 MB

20110811_LUe35_SLX-4151.CRIRUN_683.s_5.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20110811_LUe35_SLX-4151.CRIRUN_683.s_5.sequence_fastqc.zip
494.22 kB
20110811_LUe35_SLX-4151.CRIRUN_683.s_5.sequence.fastq.gz
766.15 MB

20110811_LUe36_SLX-4152.CRIRUN_683.s_6.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
20110811_LUe36_SLX-4152.CRIRUN_683.s_6.sequence_fastqc.zip
481.31 kB
stderr.txt
1.58 kB
20110811_LUe36_SLX-4152.CRIRUN_683.s_6.sequence.fastq.gz
957.45 MB

20110921_LUe39_SLX-4293.CRIRUN_701.s_6.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20110921_LUe39_SLX-4293.CRIRUN_701.s_6.sequence.fastq.gz
360.37 MB
20110921_LUe39_SLX-4293.CRIRUN_701.s_6.sequence_fastqc.zip
487.97 kB

20110921_LUe40_SLX-4294.CRIRUN_701.s_7.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20110921_LUe40_SLX-4294.CRIRUN_701.s_7.sequence.fastq.gz
418.35 MB
20110921_LUe40_SLX-4294.CRIRUN_701.s_7.sequence_fastqc.zip
478.75 kB

20111026_LUe43_SLX-4427.CRIRUN_724.s_3.sequence.fastq.gz

FASTQ file (single-end)
stderr.txt
1.58 kB
fastqc
Directory
20111026_LUe43_SLX-4427.CRIRUN_724.s_3.sequence_fastqc.zip
528.86 kB
20111026_LUe43_SLX-4427.CRIRUN_724.s_3.sequence.fastq.gz
698.32 MB

20111026_LUe44_SLX-4428.CRIRUN_724.s_4.sequence.fastq.gz

FASTQ file (single-end)
stderr.txt
1.66 kB
fastqc
Directory
20111026_LUe44_SLX-4428.CRIRUN_724.s_4.sequence.fastq.gz
528.44 MB
20111026_LUe44_SLX-4428.CRIRUN_724.s_4.sequence_fastqc.zip
511.27 kB

APOBEC3G_CEM-SS_GFP_nT7_HIV_Producer_Cell_control_20110921_LUe39

FASTQ file (single-end)
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39.fastq.gz
6.10 MB
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_fastqc.zip
363.08 kB
stderr.txt
1.91 kB
iCount summary
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single_summary_subtype.tsv
981 B
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single_summary_type.tsv
420 B
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single_summary_gene.tsv
800.12 kB
Paraclu
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single_peaks.bed.gz
1.48 kB
iCount RNA-maps
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single.tar.gz
499.06 kB
Cutadapt (single-end)
report.txt
699 B
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed.fastq.gz
6.18 MB
STAR
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed.bam
21.18 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed.bam.bai
3.24 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
1.27 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_stats.txt
1.79 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_SJ.out.tab
56.20 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed.bw
28.47 kB
iCount xlsites
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single.bed.gz
487.81 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_singleAndMulti.bed.gz
1.44 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single.bedgraph
1.95 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_reads_single.bed.gz
507.28 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_skipped.bam
2.90 kB
K-mers
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39.tar.gz
120.51 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39
Directory

APOBEC3G_CEM-SS_nT7_HIV_Producer_Cell_20110921_LUe39

iCount summary
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_type.tsv
438 B
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_gene.tsv
1.56 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_subtype.tsv
1016 B
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_fastqc.zip
340.62 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39.fastq.gz
87.35 MB
stderr.txt
1.76 kB
iCount RNA-maps
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.tar.gz
1.45 MB
Paraclu
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_peaks.bed.gz
47.77 kB
Cutadapt (single-end)
fastqc
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.fastq.gz
90.20 MB
report.txt
687 B
STAR
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bam.bai
4.26 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
20.46 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bam
211.42 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_SJ.out.tab
913.35 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bw
74.83 kB
iCount xlsites
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.bed.gz
6.47 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_skipped.bam
3.21 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.bedgraph
30.02 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_reads_single.bed.gz
6.72 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_singleAndMulti.bed.gz
12.94 MB
K-mers
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39.tar.gz
394.76 kB

APOBEC3G_CEM-SS_nGFP_HIV_Producer_Cell_20110921_LUe39

STAR
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bam.bai
2.94 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bam
23.84 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bw
28.37 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
2.12 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_SJ.out.tab
252.42 kB
iCount xlsites
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.bed.gz
744.06 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_skipped.bam
2.90 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_singleAndMulti.bed.gz
1.88 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_reads_single.bed.gz
775.21 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.bedgraph
3.16 MB
FASTQ file (single-end)
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39.fastq.gz
9.23 MB
fastqc
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_fastqc.zip
332.32 kB
stderr.txt
1.69 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
688 B
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.fastq.gz
9.53 MB
iCount summary
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_subtype.tsv
988 B
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_gene.tsv
937.45 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_type.tsv
428 B
iCount RNA-maps
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.tar.gz
703.21 kB
Paraclu
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_peaks.bed.gz
6.56 kB
K-mers
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39.tar.gz
295.97 kB

APOBEC3F_CEM-SS_nGFP_HIV_Producer_Cell_20110921_LUe39

Paraclu
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_peaks.bed.gz
4.44 kB
iCount summary
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_subtype.tsv
999 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_type.tsv
430 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_gene.tsv
1.08 MB
iCount xlsites
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.bed.gz
1.76 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_reads_single.bed.gz
1.83 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.bedgraph
7.74 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_singleAndMulti.bed.gz
3.63 MB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39.fastq.gz
16.65 MB
stderr.txt
1.69 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_fastqc.zip
332.38 kB
iCount RNA-maps
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.tar.gz
768.76 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
688 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.fastq.gz
17.18 MB
STAR
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bam.bai
3.88 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
2.99 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bam
39.78 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bw
43.27 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_SJ.out.tab
214.62 kB
K-mers
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39
Directory
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39.tar.gz
290.31 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
stderr.txt
935 B
demux_nomatch.fastq.gz
21.54 MB
fastqc
Directory
demux_nomatch_fastqc.zip
422.28 kB

APOBEC3G_CEM-SS_GFP_nT7_HIV_Producer_Cell_control_20110921_LUe40

FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40.fastq.gz
72.30 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_fastqc.zip
353.41 kB
stderr.txt
1.91 kB
iCount xlsites
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_skipped.bam
3.36 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_singleAndMulti.bed.gz
12.57 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single.bed.gz
6.63 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_reads_single.bed.gz
6.70 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single.bedgraph
30.31 MB
Paraclu
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single_peaks.bed.gz
14.06 kB
iCount summary
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single_summary_type.tsv
437 B
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single_summary_subtype.tsv
1016 B
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single_summary_gene.tsv
1.58 MB
iCount RNA-maps
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single.tar.gz
1.30 MB
Cutadapt (single-end)
report.txt
699 B
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed.fastq.gz
73.52 MB
STAR
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_SJ.out.tab
733.96 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed.bam
255.15 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
12.55 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed.bam.bai
4.09 MB
K-mers
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40.tar.gz
367.87 kB

APOBEC3G_CEM-SS_nT7_HIV_Producer_Cell_20110921_LUe40

Paraclu
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_peaks.bed.gz
6.29 kB
iCount RNA-maps
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.tar.gz
806.78 kB
STAR
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bw
44.78 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
3.71 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bam.bai
3.38 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bam
54.66 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_SJ.out.tab
286.92 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40.fastq.gz
19.18 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_fastqc.zip
354.24 kB
stderr.txt
1.67 kB
Cutadapt (single-end)
report.txt
687 B
fastqc
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.fastq.gz
19.67 MB
iCount xlsites
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_skipped.bam
2.90 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.bed.gz
1.86 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_singleAndMulti.bed.gz
3.42 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.bedgraph
8.23 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_reads_single.bed.gz
1.88 MB
iCount summary
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_type.tsv
431 B
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_gene.tsv
1.14 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_subtype.tsv
1003 B
K-mers
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40.tar.gz
298.71 kB

APOBEC3G_CEM-SS_nGFP_HIV_Producer_Cell_20110921_LUe40

iCount RNA-maps
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.tar.gz
1.67 MB
K-mers
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40.tar.gz
398.90 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40.fastq.gz
74.39 MB
stderr.txt
1.69 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_fastqc.zip
335.02 kB
Paraclu
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_peaks.bed.gz
58.19 kB
Cutadapt (single-end)
fastqc
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.fastq.gz
76.08 MB
report.txt
688 B
iCount summary
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_type.tsv
437 B
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_gene.tsv
1.65 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_subtype.tsv
1015 B
STAR
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
15.16 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_SJ.out.tab
1.44 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bam.bai
3.84 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bam
210.89 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bw
77.94 kB
iCount xlsites
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_skipped.bam
3.39 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.bed.gz
5.90 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_singleAndMulti.bed.gz
11.49 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_reads_single.bed.gz
5.96 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.bedgraph
27.34 MB

APOBEC3F_CEM-SS_nGFP_HIV_Producer_Cell_20110921_LUe40

FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40.fastq.gz
62.92 MB
stderr.txt
1.69 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_fastqc.zip
340.73 kB
iCount summary
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_subtype.tsv
1012 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_type.tsv
437 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_gene.tsv
1.60 MB
Paraclu
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_peaks.bed.gz
24.82 kB
iCount RNA-maps
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.tar.gz
1.43 MB
Cutadapt (single-end)
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.fastq.gz
63.39 MB
report.txt
688 B
fastqc
Directory
STAR
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
13.23 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bam
195.21 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bam.bai
4.05 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_SJ.out.tab
1.03 MB
iCount xlsites
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_skipped.bam
3.51 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.bed.gz
5.68 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_singleAndMulti.bed.gz
12.00 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_reads_single.bed.gz
5.74 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.bedgraph
26.00 MB
K-mers
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40
Directory
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40.tar.gz
371.23 kB

APOBEC3F_HIV IIIB_nGFP_packaged_protein_in_virions_20110811_LUe35

iCount RNA-maps
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.tar.gz
350.30 kB
iCount xlsites
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_reads_single.bed.gz
78.48 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.bedgraph
268.33 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_singleAndMulti.bed.gz
455.67 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.bed.gz
76.23 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35.fastq.gz
15.84 MB
stderr.txt
1.93 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_fastqc.zip
378.91 kB
iCount summary
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_gene.tsv
246.63 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_type.tsv
416 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_subtype.tsv
963 B
Paraclu
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_peaks.bed.gz
1.47 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
701 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.fastq.gz
15.15 MB
STAR
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bam.bai
2.05 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_SJ.out.tab
33.99 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_stats.txt
1.79 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
13.15 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bw
20.22 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bam
25.18 MB
K-mers
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35.tar.gz
121.80 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35
Directory

APOBEC3G_HIV IIIB_nT7_packaged_protein_in_virions_20110811_LUe35

FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35.fastq.gz
405.44 MB
stderr.txt
1.91 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_fastqc.zip
343.69 kB
iCount xlsites
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.bed.gz
1.26 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_skipped.bam
3.27 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.bedgraph
5.01 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_reads_single.bed.gz
1.30 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_singleAndMulti.bed.gz
4.75 MB
K-mers
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35.tar.gz
325.72 kB
Paraclu
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_peaks.bed.gz
32.78 kB
iCount RNA-maps
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.tar.gz
683.27 kB
Cutadapt (single-end)
fastqc
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.fastq.gz
416.43 MB
report.txt
700 B
STAR
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
365.64 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_stats.txt
1.81 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bam.bai
3.64 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bam
639.68 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bw
36.67 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_SJ.out.tab
561.09 kB
iCount summary
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_type.tsv
429 B
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_gene.tsv
1.46 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_subtype.tsv
998 B

APOBEC3F_HIV IIIB_nT7_packaged_protein_in_virions_20110811_LUe35

Paraclu
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_peaks.bed.gz
1.58 kB
iCount summary
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_type.tsv
416 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_gene.tsv
324.03 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_subtype.tsv
904 B
iCount RNA-maps
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.tar.gz
384.59 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.91 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_fastqc.zip
383.62 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35.fastq.gz
23.29 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
700 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.fastq.gz
21.83 MB
STAR
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bam
31.79 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
19.93 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bam.bai
2.17 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_stats.txt
1.79 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bw
20.08 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_SJ.out.tab
41.35 kB
iCount xlsites
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.bed.gz
95.46 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_reads_single.bed.gz
98.46 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_singleAndMulti.bed.gz
503.51 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.bedgraph
338.12 kB
K-mers
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35
Directory
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35.tar.gz
125.97 kB

APOBEC3F_CEM-SS_GFP_nT7_stably_transduced_cells_control_20110921_LUe41

iCount RNA-maps
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single.tar.gz
545.93 kB
STAR
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
1.14 MB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed.bam
18.66 MB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_SJ.out.tab
58.90 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed.bam.bai
2.71 MB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed.bw
34.75 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_fastqc.zip
369.45 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41.fastq.gz
7.03 MB
stderr.txt
2.03 kB
Paraclu
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single_peaks.bed.gz
2.31 kB
Cutadapt (single-end)
report.txt
705 B
fastqc
Directory
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed.fastq.gz
7.19 MB
iCount xlsites
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single.bed.gz
687.04 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_reads_single.bed.gz
704.90 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single.bedgraph
2.83 MB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_singleAndMulti.bed.gz
1.25 MB
iCount summary
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_type.tsv
428 B
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_gene.tsv
850.72 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_subtype.tsv
986 B
K-mers
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41.tar.gz
125.88 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41
Directory

APOBEC3G_CEM-SS_nT7_stably_transduced_cells_20110921_LUe41

FASTQ file (single-end)
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_fastqc.zip
344.95 kB
fastqc
Directory
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41.fastq.gz
48.06 MB
stderr.txt
1.79 kB
iCount summary
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_type.tsv
432 B
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_gene.tsv
1.33 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_subtype.tsv
1012 B
Paraclu
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_peaks.bed.gz
20.30 kB
iCount xlsites
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.bed.gz
4.99 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_singleAndMulti.bed.gz
8.20 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.bedgraph
22.99 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_reads_single.bed.gz
5.12 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_skipped.bam
3.25 kB
iCount RNA-maps
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.tar.gz
1.14 MB
Cutadapt (single-end)
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.fastq.gz
49.35 MB
fastqc
Directory
report.txt
693 B
STAR
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bam
106.41 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_SJ.out.tab
445.36 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bam.bai
3.96 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
7.80 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bw
74.74 kB
K-mers
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41
Directory
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41.tar.gz
371.43 kB

APOBEC3F_CEM-SS_nT7_stably_transduced_cells_20110921_LUe41

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.79 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_fastqc.zip
340.38 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41.fastq.gz
45.07 MB
K-mers
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41.tar.gz
352.04 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41
Directory
Paraclu
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_peaks.bed.gz
12.83 kB
iCount RNA-maps
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.tar.gz
1.15 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
693 B
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.fastq.gz
45.86 MB
STAR
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
5.80 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bam.bai
4.06 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bam
94.36 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_SJ.out.tab
385.98 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bw
85.89 kB
iCount xlsites
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_skipped.bam
3.05 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_singleAndMulti.bed.gz
8.68 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.bed.gz
5.32 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.bedgraph
24.44 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_reads_single.bed.gz
5.47 MB
iCount summary
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_gene.tsv
1.33 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_type.tsv
434 B
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_subtype.tsv
1005 B

APOBEC3F_CEM-SS_GFP_stably_transduced_cells_control_20110921_LUe41

iCount RNA-maps
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single.tar.gz
633.16 kB
Paraclu
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single_peaks.bed.gz
3.15 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41.fastq.gz
12.02 MB
stderr.txt
1.95 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_fastqc.zip
363.63 kB
iCount summary
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_subtype.tsv
994 B
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_gene.tsv
993.19 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_type.tsv
429 B
K-mers
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41
Directory
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41.tar.gz
259.24 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
701 B
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed.fastq.gz
11.93 MB
STAR
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
1.76 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed.bam.bai
3.08 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed.bam
31.22 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_SJ.out.tab
106.96 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed.bw
42.42 kB
iCount xlsites
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_singleAndMulti.bed.gz
2.07 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single.bed.gz
1.13 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_reads_single.bed.gz
1.16 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single.bedgraph
4.90 MB

APOBEC3F_CEM-SS_nGFP_stably_transduced_cells_20110921_LUe41

iCount RNA-maps
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.tar.gz
858.05 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41.fastq.gz
18.68 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_fastqc.zip
349.63 kB
stderr.txt
1.81 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
694 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.fastq.gz
19.02 MB
Paraclu
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_peaks.bed.gz
7.35 kB
STAR
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bam.bai
3.36 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
2.40 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bam
44.97 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_SJ.out.tab
303.35 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bw
49.97 kB
iCount xlsites
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.bed.gz
1.98 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_reads_single.bed.gz
2.03 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_singleAndMulti.bed.gz
3.53 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.bedgraph
8.84 MB
iCount summary
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_subtype.tsv
1002 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_type.tsv
433 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_gene.tsv
1.10 MB
K-mers
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41
Directory
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41.tar.gz
315.47 kB

APOBEC3G_CEM-SS_GFP_stably_transduced_cells_control_20110811_LUe36

FASTQ file (single-end)
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36.fastq.gz
41.83 MB
fastqc
Directory
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_fastqc.zip
354.46 kB
stderr.txt
1.95 kB
STAR
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
6.12 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed.bam
103.15 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed.bam.bai
3.29 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed.bw
64.94 kB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_SJ.out.tab
289.96 kB
iCount xlsites
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_reads_single.bed.gz
2.23 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single.bed.gz
2.06 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_skipped.bam
2.90 kB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_singleAndMulti.bed.gz
3.59 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single.bedgraph
9.13 MB
iCount RNA-maps
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single.tar.gz
868.68 kB
Paraclu
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single_peaks.bed.gz
7.41 kB
K-mers
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36
Directory
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36.tar.gz
307.28 kB
Cutadapt (single-end)
fastqc
Directory
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed.fastq.gz
42.68 MB
report.txt
701 B
iCount summary
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_type.tsv
435 B
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_gene.tsv
1.15 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_subtype.tsv
1006 B

APOBEC3G_CEM-SS_nGFP_stably_transduced_cells_20110811_LUe36

FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36.fastq.gz
369.69 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_fastqc.zip
344.98 kB
stderr.txt
1.81 kB
Paraclu
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_peaks.bed.gz
278.70 kB
iCount RNA-maps
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.tar.gz
2.47 MB
K-mers
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36
Directory
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36.tar.gz
508.49 kB
iCount summary
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_type.tsv
445 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_gene.tsv
1.90 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_subtype.tsv
1.01 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
695 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.fastq.gz
377.37 MB
STAR
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bam.bai
3.71 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
47.78 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bam
746.50 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_SJ.out.tab
2.26 MB
iCount xlsites
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_skipped.bam
3.41 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.bed.gz
17.97 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_singleAndMulti.bed.gz
27.80 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_reads_single.bed.gz
19.17 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.bedgraph
85.43 MB

APOBEC3G_CEM-SS_nT7_stably_transduced_cells_20110811_LUe36

Paraclu
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_peaks.bed.gz
47.42 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36.fastq.gz
114.45 MB
stderr.txt
1.79 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_fastqc.zip
331.23 kB
iCount RNA-maps
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.tar.gz
1.53 MB
Cutadapt (single-end)
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.fastq.gz
116.88 MB
fastqc
Directory
report.txt
694 B
STAR
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
10.34 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bam
200.39 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_SJ.out.tab
944.16 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bw
105.18 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bam.bai
3.73 MB
iCount xlsites
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.bedgraph
37.19 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_singleAndMulti.bed.gz
12.12 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_reads_single.bed.gz
8.56 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.bed.gz
7.96 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_skipped.bam
3.08 kB
iCount summary
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_type.tsv
440 B
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_gene.tsv
1.45 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_subtype.tsv
1018 B
K-mers
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36
Directory
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36.tar.gz
420.52 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
93.81 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
514.16 kB

APOBEC3F_HIV IIIB_nGFP_packaged_protein_in_virions_20111026_LUe44

FASTQ file (single-end)
fastqc
Directory
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44.fastq.gz
162.43 MB
stderr.txt
1.93 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_fastqc.zip
366.66 kB
Paraclu
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_peaks.bed.gz
1.96 kB
STAR
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_unmapped.out.mate1.fastq.gz
83.22 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bam
329.70 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bam.bai
2.85 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_SJ.out.tab
45.03 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_stats.txt
1.80 kB
iCount RNA-maps
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.tar.gz
389.94 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
702 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.fastq.gz
138.80 MB
iCount xlsites
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.bedgraph
537.19 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_skipped.bam
2.90 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.bed.gz
151.45 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_singleAndMulti.bed.gz
922.75 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_reads_single.bed.gz
169.80 kB
iCount summary
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_subtype.tsv
983 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_type.tsv
423 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_gene.tsv
367.75 kB
K-mers
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44
Directory
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44.tar.gz
134.11 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
27.73 MB
demux_nomatch_fastqc.zip
460.08 kB
stderr.txt
935 B

APOBEC3F_CEM-SS_nT7_HIV_Producer_Cell_20110921_LUe39

Cutadapt (single-end)
fastqc
Directory
report.txt
688 B
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.fastq.gz
135.37 MB
iCount xlsites
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.bed.gz
9.90 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_singleAndMulti.bed.gz
19.24 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_skipped.bam
3.42 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.bedgraph
45.72 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_reads_single.bed.gz
10.28 MB
K-mers
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39
Directory
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39.tar.gz
411.22 kB
Paraclu
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_peaks.bed.gz
47.35 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.67 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39.fastq.gz
131.24 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_fastqc.zip
344.26 kB
iCount summary
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_type.tsv
440 B
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_gene.tsv
1.85 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.tar.gz
1.63 MB
STAR
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bam
368.09 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
24.73 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bam.bai
4.18 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_SJ.out.tab
951.25 kB

APOBEC3G_CEM-SS_ctrl_HIV_Producer_Cell_negative_control_20110921_LUe40

iCount xlsites
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single.bed.gz
1.94 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_skipped.bam
2.90 kB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_singleAndMulti.bed.gz
3.03 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_reads_single.bed.gz
1.97 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single.bedgraph
8.59 MB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40.fastq.gz
13.99 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_fastqc.zip
332.54 kB
stderr.txt
2.03 kB
Paraclu
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single_peaks.bed.gz
1.08 kB
iCount RNA-maps
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single.tar.gz
687.63 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
705 B
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed.fastq.gz
14.31 MB
STAR
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
1.91 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed.bam
29.00 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed.bam.bai
3.34 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_SJ.out.tab
81.18 kB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed.bw
46.07 kB
iCount summary
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single_summary_gene.tsv
1.06 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single_summary_type.tsv
427 B
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single_summary_subtype.tsv
996 B
K-mers
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40
Directory
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40.tar.gz
204.59 kB

APOBEC3F_CEM-SS_nT7_HIV_Producer_Cell_20110921_LUe40

iCount RNA-maps
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.tar.gz
1.17 MB
iCount xlsites
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_skipped.bam
3.13 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.bed.gz
5.34 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_reads_single.bed.gz
5.40 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_singleAndMulti.bed.gz
8.62 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.bedgraph
24.44 MB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40.fastq.gz
59.71 MB
stderr.txt
1.67 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_fastqc.zip
364.06 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.fastq.gz
61.51 MB
iCount summary
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_subtype.tsv
1019 B
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_gene.tsv
1.41 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_type.tsv
440 B
K-mers
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40
Directory
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40.tar.gz
349.72 kB
STAR
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
10.30 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bam
178.22 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bam.bai
3.86 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_SJ.out.tab
496.05 kB
Paraclu
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_peaks.bed.gz
15.51 kB

APOBEC3G_HIV IIIB_GFP_packaged_protein_in_virions_control_20110811_LUe35

Cutadapt (single-end)
fastqc
Directory
report.txt
708 B
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed.fastq.gz
709.70 kB
FASTQ file (single-end)
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35.fastq.gz
757.06 kB
fastqc
Directory
stderr.txt
2.07 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_fastqc.zip
352.65 kB
iCount summary
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_type.tsv
404 B
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_gene.tsv
50.37 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_subtype.tsv
939 B
Paraclu
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_peaks.bed.gz
173 B
iCount RNA-maps
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.tar.gz
300.47 kB
K-mers
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35.tar.gz
167 B
STAR
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_stats.txt
1.78 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed.bam
2.03 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed.bam.bai
1.51 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
417.12 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed.bw
18.62 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_SJ.out.tab
3.08 kB
iCount xlsites
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.bed.gz
9.56 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_reads_single.bed.gz
10.26 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_singleAndMulti.bed.gz
97.62 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.bedgraph
31.03 kB

APOBEC3G_CEM-SS_nGFP_stably_transduced_cells_20110921_LUe41

Cutadapt (single-end)
fastqc
Directory
report.txt
694 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.fastq.gz
52.92 MB
K-mers
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41
Directory
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41.tar.gz
392.04 kB
iCount xlsites
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_skipped.bam
3.36 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.bed.gz
4.33 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_singleAndMulti.bed.gz
7.57 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.bedgraph
20.12 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_reads_single.bed.gz
4.43 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_fastqc.zip
345.24 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41.fastq.gz
51.48 MB
iCount summary
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_subtype.tsv
1009 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_type.tsv
440 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_gene.tsv
1.36 MB
Paraclu
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_peaks.bed.gz
41.70 kB
iCount RNA-maps
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.tar.gz
1.24 MB
STAR
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bam.bai
3.65 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
8.47 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bam
121.48 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_SJ.out.tab
715.83 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bw
64.31 kB

APOBEC3G_HIV IIIB_nGFP_packaged_protein_in_virions_20110811_LUe35

FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35.fastq.gz
119.50 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_fastqc.zip
351.33 kB
stderr.txt
2.03 kB
Paraclu
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_peaks.bed.gz
11.48 kB
iCount summary
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_type.tsv
426 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_subtype.tsv
987 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_gene.tsv
1.01 MB
iCount RNA-maps
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.tar.gz
511.58 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
701 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.fastq.gz
122.16 MB
STAR
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bam
199.82 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bam.bai
3.45 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_SJ.out.tab
238.68 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
104.54 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_stats.txt
1.80 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bw
27.09 kB
iCount xlsites
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.bed.gz
528.42 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_reads_single.bed.gz
547.21 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.bedgraph
1.98 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_singleAndMulti.bed.gz
2.19 MB
K-mers
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35
Directory
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35.tar.gz
282.77 kB

APOBEC3G_HIV IIIB_GFP_nT7_packaged_protein_in_virions_control_20110811_LUe35

iCount xlsites
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.bed.gz
83.10 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.bedgraph
300.79 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_reads_single.bed.gz
90.38 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_singleAndMulti.bed.gz
431.09 kB
K-mers
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35
Directory
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35.tar.gz
57.32 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35.fastq.gz
5.45 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_fastqc.zip
375.10 kB
stderr.txt
2.14 kB
iCount summary
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_type.tsv
418 B
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_gene.tsv
342.92 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_subtype.tsv
966 B
Paraclu
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_peaks.bed.gz
865 B
iCount RNA-maps
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.tar.gz
393.93 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
712 B
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed.fastq.gz
4.81 MB
STAR
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed.bam
13.37 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_stats.txt
1.79 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_SJ.out.tab
16.40 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed.bam.bai
2.00 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed.bw
21.48 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
2.16 MB

APOBEC3F_CEM-SS_T7_stably_transduced_cells_negative_control_20110921_LUe41

FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41.fastq.gz
84.26 MB
stderr.txt
2.10 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_fastqc.zip
334.20 kB
Paraclu
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single_peaks.bed.gz
16.87 kB
Cutadapt (single-end)
report.txt
709 B
fastqc
Directory
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed.fastq.gz
85.94 MB
STAR
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
9.97 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_SJ.out.tab
445.93 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed.bam.bai
4.24 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed.bw
112.92 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed.bam
161.79 MB
iCount xlsites
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_skipped.bam
3.23 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single.bed.gz
10.88 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_reads_single.bed.gz
11.16 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_singleAndMulti.bed.gz
16.71 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single.bedgraph
50.82 MB
iCount summary
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single_summary_gene.tsv
1.53 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single_summary_type.tsv
442 B
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single_summary_subtype.tsv
1021 B
iCount RNA-maps
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single.tar.gz
1.45 MB
K-mers
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41
Directory
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41.tar.gz
383.70 kB

APOBEC3F_CEM-SS_nGFP_stably_transduced_cells_20110811_LUe36

STAR
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bam
118.11 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bam.bai
3.48 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
6.09 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_SJ.out.tab
616.84 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bw
75.91 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_stats.txt
1.80 kB
iCount xlsites
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_skipped.bam
3.16 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.bed.gz
4.68 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_reads_single.bed.gz
5.05 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_singleAndMulti.bed.gz
7.29 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.bedgraph
21.61 MB
K-mers
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36
Directory
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36.tar.gz
381.59 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36.fastq.gz
66.70 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_fastqc.zip
329.38 kB
stderr.txt
1.81 kB
Paraclu
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_peaks.bed.gz
22.12 kB
iCount RNA-maps
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.tar.gz
1.20 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
694 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.fastq.gz
68.18 MB
iCount summary
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_type.tsv
433 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_subtype.tsv
1006 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_gene.tsv
1.29 MB

APOBEC3G_CEM-SS_GFP_nT7_stably_transduced_cells_control_20110811_LUe36

STAR
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed.bam.bai
3.64 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
10.19 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed.bam
163.87 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_SJ.out.tab
351.89 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_fastqc.zip
352.70 kB
stderr.txt
2.03 kB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36.fastq.gz
68.99 MB
Paraclu
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single_peaks.bed.gz
9.45 kB
iCount RNA-maps
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single.tar.gz
1013.48 kB
Cutadapt (single-end)
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed.fastq.gz
70.48 MB
report.txt
705 B
iCount xlsites
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_singleAndMulti.bed.gz
6.06 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_skipped.bam
3.17 kB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single.bedgraph
16.63 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_reads_single.bed.gz
3.98 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single.bed.gz
3.68 MB
iCount summary
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_subtype.tsv
1012 B
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_type.tsv
436 B
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_gene.tsv
1.27 MB
K-mers
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36
Directory
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36.tar.gz
336.02 kB

APOBEC3F_CEM-SS_nT7_stably_transduced_cells_20110811_LUe36

K-mers
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36.tar.gz
400.12 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36
Directory
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36.fastq.gz
107.24 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_fastqc.zip
331.00 kB
stderr.txt
1.79 kB
iCount RNA-maps
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.tar.gz
1.39 MB
Paraclu
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_peaks.bed.gz
27.13 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
694 B
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.fastq.gz
109.63 MB
STAR
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
11.13 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bam
187.63 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bw
116.71 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bam.bai
3.82 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_SJ.out.tab
636.67 kB
iCount xlsites
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.bed.gz
7.55 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_singleAndMulti.bed.gz
11.64 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.bedgraph
34.99 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_reads_single.bed.gz
8.14 MB
iCount summary
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_subtype.tsv
1015 B
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_gene.tsv
1.46 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_type.tsv
443 B

No Sample

STAR
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bam.bai
3.38 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bw
44.78 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
3.71 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bam
54.66 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_SJ.out.tab
286.92 kB
FASTQ file (single-end)
stderr.txt
1.67 kB
fastqc
Directory
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39.fastq.gz
131.24 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_fastqc.zip
344.26 kB
iCount xlsites
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single.bedgraph
8.59 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single.bed.gz
1.94 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_skipped.bam
2.90 kB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_singleAndMulti.bed.gz
3.03 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_reads_single.bed.gz
1.97 MB
Upload iCount sample annotation
20110921_LUe39_annotation_sheet.xlsx
15.23 kB
20110921_LUe39_annotation_sheet.tab.gz
990 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
677 B
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40.fastq.gz
72.30 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_fastqc.zip
353.41 kB
stderr.txt
1.91 kB
iCount RNA-maps
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.tar.gz
1.17 MB
Paraclu
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_peaks.bed.gz
6.29 kB
Paraclu
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_peaks.bed.gz
1.58 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44.fastq.gz
17.97 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_fastqc.zip
363.04 kB
stderr.txt
2.07 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44.fastq.gz
105.98 MB
stderr.txt
1.93 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_fastqc.zip
343.51 kB
Paraclu
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_peaks.bed.gz
1.39 kB
STAR
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bam.bai
2.94 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bam
23.84 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bw
28.37 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
2.12 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_SJ.out.tab
252.42 kB
STAR
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bam
118.11 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bam.bai
3.48 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
6.09 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_SJ.out.tab
616.84 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bw
75.91 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_stats.txt
1.80 kB
STAR
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bam.bai
4.17 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bam
522.66 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_stats.txt
1.81 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_SJ.out.tab
321.32 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_unmapped.out.mate1.fastq.gz
179.97 MB
Paraclu
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_peaks.bed.gz
4.44 kB
iCount xlsites
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_skipped.bam
3.36 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_singleAndMulti.bed.gz
12.57 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single.bed.gz
6.63 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_reads_single.bed.gz
6.70 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single.bedgraph
30.31 MB
K-mers
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36.tar.gz
400.12 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36
Directory
Upload iCount sample annotation
20111026_LUe43_annotation_sheet.tab.gz
930 B
20111026_LUe43_annotation_sheet.xlsx
14.96 kB
iCount RNA-maps
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.tar.gz
1.67 MB
FASTQ file (single-end)
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39.fastq.gz
6.10 MB
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_fastqc.zip
363.08 kB
stderr.txt
1.91 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
18.45 MB
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
445.39 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
707 B
FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35.fastq.gz
119.50 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_fastqc.zip
351.33 kB
stderr.txt
2.03 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
34.18 MB
demux_nomatch_fastqc.zip
413.05 kB
stderr.txt
935 B
FASTQ file (single-end)
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36.fastq.gz
41.83 MB
fastqc
Directory
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_fastqc.zip
354.46 kB
stderr.txt
1.95 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch_fastqc.zip
422.28 kB
stderr.txt
935 B
demux_nomatch.fastq.gz
21.54 MB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36.fastq.gz
107.24 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_fastqc.zip
331.00 kB
stderr.txt
1.79 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44.fastq.gz
162.43 MB
stderr.txt
1.93 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_fastqc.zip
366.66 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
93.81 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
514.16 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
2.14 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_fastqc.zip
411.95 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43.fastq.gz
19.69 MB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
116.86 MB
demux_nomatch_fastqc.zip
566.04 kB
stderr.txt
935 B
FASTQ file (single-end)
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43.fastq.gz
86.28 MB
stderr.txt
1.91 kB
fastqc
Directory
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_fastqc.zip
399.80 kB
iCount summary
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_type.tsv
438 B
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_gene.tsv
1.56 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_subtype.tsv
1016 B
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40.fastq.gz
62.92 MB
stderr.txt
1.69 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_fastqc.zip
340.73 kB
iCount RNA-maps
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.tar.gz
806.78 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35.fastq.gz
405.44 MB
stderr.txt
1.91 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_fastqc.zip
343.69 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
708 B
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed.fastq.gz
709.70 kB
FASTQ file (single-end)
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_fastqc.zip
344.95 kB
fastqc
Directory
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41.fastq.gz
48.06 MB
stderr.txt
1.79 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.79 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_fastqc.zip
340.38 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41.fastq.gz
45.07 MB
iCount RNA-maps
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.tar.gz
858.05 kB
K-mers
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41
Directory
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41.tar.gz
392.04 kB
iCount summary
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_type.tsv
432 B
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_gene.tsv
1.33 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_subtype.tsv
1012 B
Paraclu
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_peaks.bed.gz
20.30 kB
iCount RNA-maps
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single.tar.gz
545.93 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36.fastq.gz
369.69 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_fastqc.zip
344.98 kB
stderr.txt
1.81 kB
iCount RNA-maps
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.tar.gz
350.30 kB
Paraclu
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_peaks.bed.gz
47.42 kB
Paraclu
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_peaks.bed.gz
278.70 kB
iCount RNA-maps
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.tar.gz
2.47 MB
Paraclu
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_peaks.bed.gz
1.96 kB
iCount summary
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_type.tsv
426 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_subtype.tsv
990 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_gene.tsv
609.75 kB
Paraclu
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_peaks.bed.gz
39.10 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
688 B
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.fastq.gz
135.37 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
699 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.fastq.gz
88.29 MB
Cutadapt (single-end)
fastqc
Directory
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed.fastq.gz
10.21 MB
report.txt
712 B
STAR
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed.bam.bai
3.64 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
10.19 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed.bam
163.87 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_SJ.out.tab
351.89 kB
STAR
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
1.14 MB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed.bam
18.66 MB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_SJ.out.tab
58.90 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed.bam.bai
2.71 MB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed.bw
34.75 kB
STAR
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
6.12 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed.bam
103.15 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed.bam.bai
3.29 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed.bw
64.94 kB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_SJ.out.tab
289.96 kB
STAR
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_unmapped.out.mate1.fastq.gz
83.22 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bam
329.70 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bam.bai
2.85 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_SJ.out.tab
45.03 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_stats.txt
1.80 kB
iCount xlsites
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.bed.gz
744.06 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_skipped.bam
2.90 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_singleAndMulti.bed.gz
1.88 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_reads_single.bed.gz
775.21 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.bedgraph
3.16 MB
iCount xlsites
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.bed.gz
9.90 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_singleAndMulti.bed.gz
19.24 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_skipped.bam
3.42 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.bedgraph
45.72 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_reads_single.bed.gz
10.28 MB
iCount xlsites
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_skipped.bam
3.13 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.bed.gz
5.34 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_reads_single.bed.gz
5.40 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_singleAndMulti.bed.gz
8.62 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.bedgraph
24.44 MB
iCount xlsites
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.bed.gz
83.10 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.bedgraph
300.79 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_reads_single.bed.gz
90.38 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_singleAndMulti.bed.gz
431.09 kB
iCount xlsites
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_reads_single.bed.gz
78.48 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.bedgraph
268.33 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_singleAndMulti.bed.gz
455.67 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.bed.gz
76.23 kB
iCount xlsites
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.bed.gz
1.26 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_skipped.bam
3.27 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.bedgraph
5.01 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_reads_single.bed.gz
1.30 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_singleAndMulti.bed.gz
4.75 MB
iCount xlsites
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_skipped.bam
3.36 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.bed.gz
4.33 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_singleAndMulti.bed.gz
7.57 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.bedgraph
20.12 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_reads_single.bed.gz
4.43 MB
iCount xlsites
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.bed.gz
4.99 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_singleAndMulti.bed.gz
8.20 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.bedgraph
22.99 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_reads_single.bed.gz
5.12 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_skipped.bam
3.25 kB
iCount xlsites
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_skipped.bam
3.16 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.bed.gz
4.68 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_reads_single.bed.gz
5.05 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_singleAndMulti.bed.gz
7.29 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.bedgraph
21.61 MB
iCount xlsites
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_reads_single.bed.gz
2.23 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single.bed.gz
2.06 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_skipped.bam
2.90 kB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_singleAndMulti.bed.gz
3.59 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single.bedgraph
9.13 MB
iCount xlsites
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_reads_single.bed.gz
27.83 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_singleAndMulti.bed.gz
203.21 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single.bed.gz
24.45 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single.bedgraph
80.79 kB
iCount summary
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_subtype.tsv
999 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_type.tsv
430 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_gene.tsv
1.08 MB
K-mers
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35
Directory
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35.tar.gz
57.32 kB
K-mers
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39
Directory
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39.tar.gz
411.22 kB
K-mers
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35.tar.gz
325.72 kB
K-mers
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40.tar.gz
398.90 kB
K-mers
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41.tar.gz
352.04 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41
Directory
K-mers
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36
Directory
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36.tar.gz
381.59 kB
iCount RNA-maps
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single.tar.gz
633.16 kB
Paraclu
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single_peaks.bed.gz
3.15 kB
iCount RNA-maps
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.tar.gz
1.14 MB
iCount RNA-maps
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single.tar.gz
868.68 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41.fastq.gz
12.02 MB
stderr.txt
1.95 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_fastqc.zip
363.63 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43.fastq.gz
267.34 MB
stderr.txt
1.91 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_fastqc.zip
349.70 kB
FASTQ file (single-end)
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39.fastq.gz
9.23 MB
fastqc
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_fastqc.zip
332.32 kB
stderr.txt
1.69 kB
Paraclu
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_peaks.bed.gz
11.48 kB
iCount xlsites
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.bed.gz
1.76 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_reads_single.bed.gz
1.83 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.bedgraph
7.74 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_singleAndMulti.bed.gz
3.63 MB
Paraclu
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_peaks.bed.gz
47.35 kB
iCount summary
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_type.tsv
416 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_gene.tsv
324.03 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_subtype.tsv
904 B
K-mers
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36
Directory
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36.tar.gz
508.49 kB
Upload iCount sample annotation
20110811_LUe36_annotation_sheet.tab.gz
1.02 kB
20110811_LUe36_annotation_sheet.xlsx
15.30 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40.fastq.gz
13.99 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_fastqc.zip
332.54 kB
stderr.txt
2.03 kB
Upload iCount sample annotation
20110811_LUe35_annotation_sheet.tab.gz
1.03 kB
20110811_LUe35_annotation_sheet.xlsx
15.38 kB
Upload iCount sample annotation
20110921_LUe40_annotation_sheet.xlsx
15.29 kB
20110921_LUe40_annotation_sheet.tab.gz
1.00 kB
Upload iCount sample annotation
20110921_LUe41_annotation_sheet.xlsx
14.93 kB
20110921_LUe41_annotation_sheet.tab.gz
1.03 kB
Upload iCount sample annotation
20111026_LUe44_annotation_sheet.xlsx
14.91 kB
20111026_LUe44_annotation_sheet.tab.gz
927 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
551 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20110921_LUe39_SLX-4293.CRIRUN_701.s_6.sequence.fastq.gz
360.37 MB
20110921_LUe39_SLX-4293.CRIRUN_701.s_6.sequence_fastqc.zip
487.97 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20110811_LUe35_SLX-4151.CRIRUN_683.s_5.sequence_fastqc.zip
494.22 kB
20110811_LUe35_SLX-4151.CRIRUN_683.s_5.sequence.fastq.gz
766.15 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20110921_LUe40_SLX-4294.CRIRUN_701.s_7.sequence.fastq.gz
418.35 MB
20110921_LUe40_SLX-4294.CRIRUN_701.s_7.sequence_fastqc.zip
478.75 kB
FASTQ file (single-end)
fastqc
Directory
20110811_LUe36_SLX-4152.CRIRUN_683.s_6.sequence_fastqc.zip
481.31 kB
stderr.txt
1.58 kB
20110811_LUe36_SLX-4152.CRIRUN_683.s_6.sequence.fastq.gz
957.45 MB
FASTQ file (single-end)
stderr.txt
1.58 kB
fastqc
Directory
20111026_LUe43_SLX-4427.CRIRUN_724.s_3.sequence_fastqc.zip
528.86 kB
20111026_LUe43_SLX-4427.CRIRUN_724.s_3.sequence.fastq.gz
698.32 MB
FASTQ file (single-end)
stderr.txt
1.66 kB
fastqc
Directory
20111026_LUe44_SLX-4428.CRIRUN_724.s_4.sequence.fastq.gz
528.44 MB
20111026_LUe44_SLX-4428.CRIRUN_724.s_4.sequence_fastqc.zip
511.27 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20110921_LUe41_SLX-4295.CRIRUN_701.s_8.sequence_fastqc.zip
464.76 kB
20110921_LUe41_SLX-4295.CRIRUN_701.s_8.sequence.fastq.gz
386.25 MB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36.fastq.gz
66.70 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_fastqc.zip
329.38 kB
stderr.txt
1.81 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39.fastq.gz
16.65 MB
stderr.txt
1.69 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_fastqc.zip
332.38 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
649 B
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40.fastq.gz
59.71 MB
stderr.txt
1.67 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_fastqc.zip
364.06 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
27.73 MB
demux_nomatch_fastqc.zip
460.08 kB
stderr.txt
935 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
433 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
775 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_fastqc.zip
345.24 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41.fastq.gz
51.48 MB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41.fastq.gz
18.68 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_fastqc.zip
349.63 kB
stderr.txt
1.81 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
437 B
FASTQ file (single-end)
demux_nomatch_fastqc.zip
463.18 kB
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
22.75 MB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_fastqc.zip
340.62 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39.fastq.gz
87.35 MB
stderr.txt
1.76 kB
iCount RNA-maps
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.tar.gz
768.76 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
688 B
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.fastq.gz
9.53 MB
iCount summary
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_subtype.tsv
988 B
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_gene.tsv
937.45 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_summary_type.tsv
428 B
iCount RNA-maps
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single.tar.gz
703.21 kB
Paraclu
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_single_peaks.bed.gz
6.56 kB
K-mers
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue39.tar.gz
295.97 kB
iCount RNA-maps
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.tar.gz
1.45 MB
iCount summary
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_type.tsv
440 B
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_gene.tsv
1.85 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.tar.gz
1.63 MB
Paraclu
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single_peaks.bed.gz
47.77 kB
iCount summary
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single_summary_subtype.tsv
981 B
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single_summary_type.tsv
420 B
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single_summary_gene.tsv
800.12 kB
Paraclu
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single_peaks.bed.gz
1.48 kB
iCount RNA-maps
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single.tar.gz
499.06 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40.fastq.gz
74.39 MB
stderr.txt
1.69 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_fastqc.zip
335.02 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40.fastq.gz
19.18 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_fastqc.zip
354.24 kB
stderr.txt
1.67 kB
iCount summary
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_subtype.tsv
1012 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_type.tsv
437 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_gene.tsv
1.60 MB
Paraclu
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_peaks.bed.gz
24.82 kB
iCount RNA-maps
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.tar.gz
1.43 MB
Paraclu
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_peaks.bed.gz
58.19 kB
Cutadapt (single-end)
fastqc
Directory
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.fastq.gz
76.08 MB
report.txt
688 B
iCount summary
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_type.tsv
437 B
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_gene.tsv
1.65 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single_summary_subtype.tsv
1015 B
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.fastq.gz
61.51 MB
iCount summary
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_subtype.tsv
1019 B
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_gene.tsv
1.41 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_type.tsv
440 B
K-mers
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40
Directory
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40.tar.gz
349.72 kB
Paraclu
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single_peaks.bed.gz
14.06 kB
iCount summary
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single_summary_type.tsv
437 B
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single_summary_subtype.tsv
1016 B
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single_summary_gene.tsv
1.58 MB
iCount RNA-maps
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_single.tar.gz
1.30 MB
Paraclu
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single_peaks.bed.gz
1.08 kB
iCount RNA-maps
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single.tar.gz
687.63 kB
iCount RNA-maps
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.tar.gz
384.59 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.91 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_fastqc.zip
383.62 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35.fastq.gz
23.29 MB
FASTQ file (single-end)
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35.fastq.gz
757.06 kB
fastqc
Directory
stderr.txt
2.07 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_fastqc.zip
352.65 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
700 B
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.fastq.gz
21.83 MB
FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35.fastq.gz
5.45 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_fastqc.zip
375.10 kB
stderr.txt
2.14 kB
Paraclu
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_peaks.bed.gz
32.78 kB
iCount RNA-maps
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.tar.gz
683.27 kB
iCount summary
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_type.tsv
418 B
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_gene.tsv
342.92 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_subtype.tsv
966 B
Paraclu
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_peaks.bed.gz
865 B
iCount RNA-maps
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.tar.gz
393.93 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35.fastq.gz
15.84 MB
stderr.txt
1.93 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_fastqc.zip
378.91 kB
iCount summary
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_gene.tsv
246.63 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_type.tsv
416 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_subtype.tsv
963 B
Paraclu
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_peaks.bed.gz
1.47 kB
iCount summary
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_type.tsv
426 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_subtype.tsv
987 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_gene.tsv
1.01 MB
iCount RNA-maps
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.tar.gz
511.58 kB
iCount summary
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_type.tsv
404 B
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_gene.tsv
50.37 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_summary_subtype.tsv
939 B
Paraclu
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single_peaks.bed.gz
173 B
iCount RNA-maps
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.tar.gz
300.47 kB
K-mers
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35.tar.gz
167 B
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_fastqc.zip
369.45 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41.fastq.gz
7.03 MB
stderr.txt
2.03 kB
FASTQ file (single-end)
fastqc
Directory
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41.fastq.gz
84.26 MB
stderr.txt
2.10 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_fastqc.zip
334.20 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
694 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.fastq.gz
19.02 MB
Paraclu
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_peaks.bed.gz
7.35 kB
iCount summary
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_subtype.tsv
1009 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_type.tsv
440 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_gene.tsv
1.36 MB
Paraclu
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_peaks.bed.gz
41.70 kB
iCount RNA-maps
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.tar.gz
1.24 MB
iCount summary
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_subtype.tsv
994 B
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_gene.tsv
993.19 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_type.tsv
429 B
K-mers
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41
Directory
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41.tar.gz
259.24 kB
Paraclu
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_peaks.bed.gz
12.83 kB
iCount RNA-maps
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.tar.gz
1.15 MB
Paraclu
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single_peaks.bed.gz
2.31 kB
Paraclu
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single_peaks.bed.gz
16.87 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_fastqc.zip
352.70 kB
stderr.txt
2.03 kB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36.fastq.gz
68.99 MB
FASTQ file (single-end)
fastqc
Directory
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36.fastq.gz
114.45 MB
stderr.txt
1.79 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_fastqc.zip
331.23 kB
iCount RNA-maps
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.tar.gz
1.39 MB
Paraclu
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_peaks.bed.gz
27.13 kB
iCount RNA-maps
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.tar.gz
1.53 MB
Paraclu
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single_peaks.bed.gz
9.45 kB
iCount RNA-maps
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single.tar.gz
1013.48 kB
Paraclu
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_peaks.bed.gz
22.12 kB
iCount RNA-maps
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.tar.gz
1.20 MB
iCount summary
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_type.tsv
445 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_gene.tsv
1.90 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_subtype.tsv
1.01 kB
Paraclu
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single_peaks.bed.gz
7.41 kB
K-mers
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36
Directory
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36.tar.gz
307.28 kB
iCount RNA-maps
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.tar.gz
388.83 kB
iCount RNA-maps
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.tar.gz
389.94 kB
iCount RNA-maps
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single.tar.gz
295.44 kB
Paraclu
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single_peaks.bed.gz
205 B
K-mers
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44.tar.gz
166 B
Paraclu
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_peaks.bed.gz
14.05 kB
iCount RNA-maps
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.tar.gz
402.57 kB
iCount RNA-maps
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.tar.gz
479.42 kB
iCount RNA-maps
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single.tar.gz
319.76 kB
K-mers
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43.tar.gz
168 B
Cutadapt (single-end)
fastqc
Directory
report.txt
688 B
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.fastq.gz
17.18 MB
Cutadapt (single-end)
fastqc
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.fastq.gz
90.20 MB
report.txt
687 B
Cutadapt (single-end)
report.txt
699 B
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed.fastq.gz
6.18 MB
Cutadapt (single-end)
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.fastq.gz
63.39 MB
report.txt
688 B
fastqc
Directory
Cutadapt (single-end)
report.txt
687 B
fastqc
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.fastq.gz
19.67 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
705 B
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed.fastq.gz
14.31 MB
Cutadapt (single-end)
report.txt
699 B
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed.fastq.gz
73.52 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
712 B
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed.fastq.gz
4.81 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
701 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.fastq.gz
15.15 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
701 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.fastq.gz
122.16 MB
Cutadapt (single-end)
fastqc
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.fastq.gz
416.43 MB
report.txt
700 B
Cutadapt (single-end)
fastqc
Directory
report.txt
694 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.fastq.gz
52.92 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
701 B
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed.fastq.gz
11.93 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
693 B
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.fastq.gz
45.86 MB
Cutadapt (single-end)
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.fastq.gz
49.35 MB
fastqc
Directory
report.txt
693 B
Cutadapt (single-end)
report.txt
705 B
fastqc
Directory
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed.fastq.gz
7.19 MB
Cutadapt (single-end)
report.txt
709 B
fastqc
Directory
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed.fastq.gz
85.94 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
694 B
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.fastq.gz
109.63 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
701 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.fastq.gz
100.67 MB
Cutadapt (single-end)
fastqc
Directory
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed.fastq.gz
70.48 MB
report.txt
705 B
Cutadapt (single-end)
fastqc
Directory
report.txt
695 B
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.fastq.gz
377.37 MB
Cutadapt (single-end)
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.fastq.gz
116.88 MB
fastqc
Directory
report.txt
694 B
Cutadapt (single-end)
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed.fastq.gz
13.81 MB
fastqc
Directory
report.txt
708 B
Cutadapt (single-end)
fastqc
Directory
report.txt
694 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.fastq.gz
68.18 MB
Cutadapt (single-end)
fastqc
Directory
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed.fastq.gz
42.68 MB
report.txt
701 B
Cutadapt (single-end)
fastqc
Directory
report.txt
702 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.fastq.gz
138.80 MB
Cutadapt (single-end)
report.txt
700 B
fastqc
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.fastq.gz
275.49 MB
STAR
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bam.bai
3.88 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
2.99 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bam
39.78 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed.bw
43.27 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39_trimmed_SJ.out.tab
214.62 kB
STAR
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bam
368.09 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
24.73 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bam.bai
4.18 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_SJ.out.tab
951.25 kB
STAR
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bam.bai
4.26 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
20.46 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bam
211.42 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_SJ.out.tab
913.35 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed.bw
74.83 kB
STAR
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed.bam
21.18 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed.bam.bai
3.24 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_unmapped.out.mate1.fastq.gz
1.27 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_stats.txt
1.79 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_SJ.out.tab
56.20 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed.bw
28.47 kB
STAR
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
15.16 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_SJ.out.tab
1.44 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bam.bai
3.84 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bam
210.89 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bw
77.94 kB
STAR
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
13.23 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bam
195.21 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed.bam.bai
4.05 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_SJ.out.tab
1.03 MB
STAR
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
10.30 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bam
178.22 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed.bam.bai
3.86 MB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_SJ.out.tab
496.05 kB
STAR
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_SJ.out.tab
733.96 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed.bam
255.15 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
12.55 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40_trimmed.bam.bai
4.09 MB
K-mers
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39
Directory
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue39.tar.gz
290.31 kB
STAR
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_unmapped.out.mate1.fastq.gz
1.91 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed.bam
29.00 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed.bam.bai
3.34 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_SJ.out.tab
81.18 kB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_stats.txt
1.80 kB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed.bw
46.07 kB
STAR
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bam
31.79 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
19.93 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bam.bai
2.17 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_stats.txt
1.79 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bw
20.08 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_SJ.out.tab
41.35 kB
STAR
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed.bam
13.37 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_stats.txt
1.79 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_SJ.out.tab
16.40 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed.bam.bai
2.00 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed.bw
21.48 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
2.16 MB
STAR
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bam.bai
2.05 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_SJ.out.tab
33.99 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_stats.txt
1.79 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
13.15 MB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bw
20.22 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bam
25.18 MB
STAR
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bam
199.82 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bam.bai
3.45 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_SJ.out.tab
238.68 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
104.54 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_stats.txt
1.80 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed.bw
27.09 kB
STAR
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
365.64 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_stats.txt
1.81 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bam.bai
3.64 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bam
639.68 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed.bw
36.67 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_SJ.out.tab
561.09 kB
STAR
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_stats.txt
1.78 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed.bam
2.03 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed.bam.bai
1.51 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_unmapped.out.mate1.fastq.gz
417.12 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed.bw
18.62 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_SJ.out.tab
3.08 kB
STAR
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bam.bai
3.36 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
2.40 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bam
44.97 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_SJ.out.tab
303.35 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bw
49.97 kB
STAR
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bam.bai
3.65 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
8.47 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bam
121.48 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_SJ.out.tab
715.83 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed.bw
64.31 kB
STAR
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
1.76 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed.bam.bai
3.08 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed.bam
31.22 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_SJ.out.tab
106.96 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed.bw
42.42 kB
STAR
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
11.13 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bam
187.63 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bw
116.71 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bam.bai
3.82 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_SJ.out.tab
636.67 kB
STAR
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
5.80 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bam.bai
4.06 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bam
94.36 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_SJ.out.tab
385.98 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_stats.txt
1.81 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bw
85.89 kB
STAR
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bam
106.41 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_SJ.out.tab
445.36 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bam.bai
3.96 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
7.80 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed.bw
74.74 kB
STAR
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_unmapped.out.mate1.fastq.gz
9.97 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_stats.txt
1.80 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_SJ.out.tab
445.93 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed.bam.bai
4.24 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed.bw
112.92 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed.bam
161.79 MB
STAR
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
10.34 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bam
200.39 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_SJ.out.tab
944.16 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bw
105.18 kB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed.bam.bai
3.73 MB
STAR
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bam.bai
3.71 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_unmapped.out.mate1.fastq.gz
47.78 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_stats.txt
1.81 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed.bam
746.50 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_SJ.out.tab
2.26 MB
STAR
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bam.bai
2.61 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_stats.txt
1.80 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bam
174.78 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_SJ.out.tab
36.15 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bw
22.53 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_unmapped.out.mate1.fastq.gz
74.08 MB
STAR
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed.bam.bai
1.67 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_unmapped.out.mate1.fastq.gz
2.86 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed.bam
56.43 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_SJ.out.tab
6.99 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed.bw
20.87 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_stats.txt
1.79 kB
STAR
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed.bam.bai
1.98 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_stats.txt
1.80 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_unmapped.out.mate1.fastq.gz
3.37 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed.bam
35.27 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_SJ.out.tab
15.58 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed.bw
21.22 kB
STAR
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bam
220.44 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bam.bai
3.57 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_unmapped.out.mate1.fastq.gz
51.85 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bw
25.82 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_stats.txt
1.81 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_SJ.out.tab
114.07 kB
iCount xlsites
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.bed.gz
6.47 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_skipped.bam
3.21 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_single.bedgraph
30.02 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_reads_single.bed.gz
6.72 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39_trimmed_singleAndMulti.bed.gz
12.94 MB
iCount xlsites
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single.bed.gz
487.81 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_singleAndMulti.bed.gz
1.44 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_single.bedgraph
1.95 MB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_reads_single.bed.gz
507.28 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39_trimmed_skipped.bam
2.90 kB
iCount xlsites
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_skipped.bam
3.51 kB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.bed.gz
5.68 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_singleAndMulti.bed.gz
12.00 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_reads_single.bed.gz
5.74 MB
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.bedgraph
26.00 MB
iCount xlsites
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_skipped.bam
3.39 kB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.bed.gz
5.90 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_singleAndMulti.bed.gz
11.49 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_reads_single.bed.gz
5.96 MB
apobec3g-cem-ss-ngfp-hiv-producer-cell-20110921-lue40_trimmed_single.bedgraph
27.34 MB
iCount xlsites
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_skipped.bam
2.90 kB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.bed.gz
1.86 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_singleAndMulti.bed.gz
3.42 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single.bedgraph
8.23 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_reads_single.bed.gz
1.88 MB
iCount xlsites
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.bed.gz
528.42 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_reads_single.bed.gz
547.21 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_single.bedgraph
1.98 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35_trimmed_singleAndMulti.bed.gz
2.19 MB
iCount xlsites
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.bed.gz
95.46 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_reads_single.bed.gz
98.46 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_singleAndMulti.bed.gz
503.51 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single.bedgraph
338.12 kB
iCount xlsites
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.bed.gz
1.98 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_reads_single.bed.gz
2.03 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_singleAndMulti.bed.gz
3.53 MB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single.bedgraph
8.84 MB
iCount xlsites
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.bed.gz
9.56 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_reads_single.bed.gz
10.26 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_singleAndMulti.bed.gz
97.62 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20110811-lue35_trimmed_single.bedgraph
31.03 kB
iCount xlsites
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_singleAndMulti.bed.gz
2.07 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single.bed.gz
1.13 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_reads_single.bed.gz
1.16 MB
apobec3f-cem-ss-gfp-stably-transduced-cells-control-20110921-lue41_trimmed_single.bedgraph
4.90 MB
iCount xlsites
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_skipped.bam
3.05 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_singleAndMulti.bed.gz
8.68 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.bed.gz
5.32 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single.bedgraph
24.44 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_reads_single.bed.gz
5.47 MB
iCount xlsites
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single.bed.gz
687.04 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_reads_single.bed.gz
704.90 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single.bedgraph
2.83 MB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_singleAndMulti.bed.gz
1.25 MB
iCount xlsites
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_singleAndMulti.bed.gz
6.06 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_skipped.bam
3.17 kB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single.bedgraph
16.63 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_reads_single.bed.gz
3.98 MB
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single.bed.gz
3.68 MB
iCount xlsites
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_skipped.bam
2.90 kB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.bed.gz
7.55 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_singleAndMulti.bed.gz
11.64 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.bedgraph
34.99 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_reads_single.bed.gz
8.14 MB
iCount summary
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_type.tsv
433 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_subtype.tsv
1006 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single_summary_gene.tsv
1.29 MB
iCount xlsites
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_skipped.bam
3.23 kB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single.bed.gz
10.88 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_reads_single.bed.gz
11.16 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_singleAndMulti.bed.gz
16.71 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single.bedgraph
50.82 MB
iCount xlsites
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.bedgraph
37.19 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_singleAndMulti.bed.gz
12.12 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_reads_single.bed.gz
8.56 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single.bed.gz
7.96 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_skipped.bam
3.08 kB
iCount xlsites
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_reads_single.bed.gz
115.99 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_singleAndMulti.bed.gz
731.18 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.bedgraph
370.75 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.bed.gz
104.71 kB
iCount xlsites
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.bedgraph
537.19 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_skipped.bam
2.90 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.bed.gz
151.45 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_singleAndMulti.bed.gz
922.75 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_reads_single.bed.gz
169.80 kB
iCount xlsites
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_skipped.bam
2.90 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_singleAndMulti.bed.gz
1.82 MB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_reads_single.bed.gz
307.23 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.bed.gz
286.28 kB
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.bedgraph
1.03 MB
iCount xlsites
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single.bed.gz
47.13 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single.bedgraph
163.26 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_singleAndMulti.bed.gz
430.75 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_reads_single.bed.gz
51.28 kB
iCount xlsites
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_skipped.bam
3.41 kB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.bed.gz
17.97 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_singleAndMulti.bed.gz
27.80 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_reads_single.bed.gz
19.17 MB
apobec3g-cem-ss-ngfp-stably-transduced-cells-20110811-lue36_trimmed_single.bedgraph
85.43 MB
iCount xlsites
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_skipped.bam
4.37 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.bed.gz
732.12 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_reads_single.bed.gz
788.80 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.bedgraph
2.73 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_singleAndMulti.bed.gz
4.15 MB
iCount summary
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_type.tsv
431 B
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_gene.tsv
1.14 MB
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_summary_subtype.tsv
1003 B
iCount summary
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single_summary_gene.tsv
1.06 MB
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single_summary_type.tsv
427 B
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40_trimmed_single_summary_subtype.tsv
996 B
Paraclu
apobec3f-cem-ss-nt7-hiv-producer-cell-20110921-lue40_trimmed_single_peaks.bed.gz
15.51 kB
iCount summary
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_subtype.tsv
1002 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_type.tsv
433 B
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41_trimmed_single_summary_gene.tsv
1.10 MB
iCount summary
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_type.tsv
429 B
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_gene.tsv
1.46 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35_trimmed_single_summary_subtype.tsv
998 B
iCount summary
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_gene.tsv
1.33 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_type.tsv
434 B
apobec3f-cem-ss-nt7-stably-transduced-cells-20110921-lue41_trimmed_single_summary_subtype.tsv
1005 B
iCount summary
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_type.tsv
428 B
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_gene.tsv
850.72 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41_trimmed_single_summary_subtype.tsv
986 B
iCount summary
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_subtype.tsv
1015 B
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_gene.tsv
1.46 MB
apobec3f-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_type.tsv
443 B
iCount summary
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single_summary_gene.tsv
1.53 MB
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single_summary_type.tsv
442 B
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single_summary_subtype.tsv
1021 B
iCount RNA-maps
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41_trimmed_single.tar.gz
1.45 MB
iCount summary
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_subtype.tsv
1012 B
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_type.tsv
436 B
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_gene.tsv
1.27 MB
iCount summary
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_type.tsv
435 B
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_gene.tsv
1.15 MB
apobec3g-cem-ss-gfp-stably-transduced-cells-control-20110811-lue36_trimmed_single_summary_subtype.tsv
1006 B
iCount summary
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_type.tsv
422 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_subtype.tsv
912 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_gene.tsv
306.50 kB
iCount summary
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_type.tsv
440 B
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_gene.tsv
1.45 MB
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36_trimmed_single_summary_subtype.tsv
1018 B
iCount summary
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_subtype.tsv
983 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_type.tsv
423 B
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_gene.tsv
367.75 kB
iCount summary
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single_summary_type.tsv
412 B
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single_summary_gene.tsv
71.17 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single_summary_subtype.tsv
959 B
iCount summary
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single_summary_type.tsv
419 B
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single_summary_subtype.tsv
966 B
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single_summary_gene.tsv
152.07 kB
Paraclu
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single_peaks.bed.gz
1.00 kB
iCount summary
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_type.tsv
431 B
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_subtype.tsv
1008 B
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_gene.tsv
1.08 MB
K-mers
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39.tar.gz
120.51 kB
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue39
Directory
K-mers
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40
Directory
apobec3f-cem-ss-ngfp-hiv-producer-cell-20110921-lue40.tar.gz
371.23 kB
K-mers
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue40.tar.gz
298.71 kB
K-mers
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40
Directory
apobec3g-cem-ss-ctrl-hiv-producer-cell-negative-control-20110921-lue40.tar.gz
204.59 kB
K-mers
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39
Directory
apobec3g-cem-ss-nt7-hiv-producer-cell-20110921-lue39.tar.gz
394.76 kB
K-mers
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35
Directory
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20110811-lue35.tar.gz
125.97 kB
K-mers
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35.tar.gz
121.80 kB
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35
Directory
K-mers
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41
Directory
apobec3f-cem-ss-ngfp-stably-transduced-cells-20110921-lue41.tar.gz
315.47 kB
K-mers
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40
Directory
apobec3g-cem-ss-gfp-nt7-hiv-producer-cell-control-20110921-lue40.tar.gz
367.87 kB
K-mers
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41.tar.gz
125.88 kB
apobec3f-cem-ss-gfp-nt7-stably-transduced-cells-control-20110921-lue41
Directory
K-mers
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35
Directory
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20110811-lue35.tar.gz
282.77 kB
K-mers
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41
Directory
apobec3g-cem-ss-nt7-stably-transduced-cells-20110921-lue41.tar.gz
371.43 kB
K-mers
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41
Directory
apobec3f-cem-ss-t7-stably-transduced-cells-negative-control-20110921-lue41.tar.gz
383.70 kB
K-mers
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44
Directory
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44.tar.gz
129.21 kB
K-mers
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36
Directory
apobec3g-cem-ss-gfp-nt7-stably-transduced-cells-control-20110811-lue36.tar.gz
336.02 kB
K-mers
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44
Directory
apobec3f-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44.tar.gz
134.11 kB
K-mers
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36
Directory
apobec3g-cem-ss-nt7-stably-transduced-cells-20110811-lue36.tar.gz
420.52 kB
K-mers
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43
Directory
apobec3f-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43.tar.gz
152.47 kB
K-mers
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43.tar.gz
307.28 kB

APOBEC3G_HIV IIIB_GFP_packaged_protein_in_virions_control_20111026_LUe44

FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44.fastq.gz
17.97 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_fastqc.zip
363.04 kB
stderr.txt
2.07 kB
iCount xlsites
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_reads_single.bed.gz
27.83 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_singleAndMulti.bed.gz
203.21 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single.bed.gz
24.45 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single.bedgraph
80.79 kB
iCount RNA-maps
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single.tar.gz
295.44 kB
Paraclu
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single_peaks.bed.gz
205 B
K-mers
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44.tar.gz
166 B
Cutadapt (single-end)
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed.fastq.gz
13.81 MB
fastqc
Directory
report.txt
708 B
STAR
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed.bam.bai
1.67 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_unmapped.out.mate1.fastq.gz
2.86 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed.bam
56.43 MB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_SJ.out.tab
6.99 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed.bw
20.87 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_stats.txt
1.79 kB
iCount summary
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single_summary_type.tsv
412 B
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single_summary_gene.tsv
71.17 kB
apobec3g-hiv-iiib-gfp-packaged-protein-in-virions-control-20111026-lue44_trimmed_single_summary_subtype.tsv
959 B

APOBEC3G_HIV IIIB_nGFP_packaged_protein_in_virions_20111026_LUe44

FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44.fastq.gz
105.98 MB
stderr.txt
1.93 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_fastqc.zip
343.51 kB
Paraclu
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_peaks.bed.gz
1.39 kB
iCount RNA-maps
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.tar.gz
388.83 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
701 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.fastq.gz
100.67 MB
STAR
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bam.bai
2.61 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_stats.txt
1.80 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bam
174.78 MB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_SJ.out.tab
36.15 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed.bw
22.53 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_unmapped.out.mate1.fastq.gz
74.08 MB
iCount xlsites
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_reads_single.bed.gz
115.99 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_singleAndMulti.bed.gz
731.18 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.bedgraph
370.75 kB
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single.bed.gz
104.71 kB
iCount summary
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_type.tsv
422 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_subtype.tsv
912 B
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44_trimmed_single_summary_gene.tsv
306.50 kB
K-mers
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44
Directory
apobec3g-hiv-iiib-ngfp-packaged-protein-in-virions-20111026-lue44.tar.gz
129.21 kB

APOBEC3G_HIV IIIB_GFP_nT7_packaged_protein_in_virions_control_20111026_LUe43

FASTQ file (single-end)
fastqc
Directory
stderr.txt
2.14 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_fastqc.zip
411.95 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43.fastq.gz
19.69 MB
Cutadapt (single-end)
fastqc
Directory
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed.fastq.gz
10.21 MB
report.txt
712 B
iCount RNA-maps
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single.tar.gz
319.76 kB
K-mers
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43.tar.gz
168 B
STAR
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed.bam.bai
1.98 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_stats.txt
1.80 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_unmapped.out.mate1.fastq.gz
3.37 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed.bam
35.27 MB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_SJ.out.tab
15.58 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed.bw
21.22 kB
iCount xlsites
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single.bed.gz
47.13 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single.bedgraph
163.26 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_skipped.bam
2.90 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_singleAndMulti.bed.gz
430.75 kB
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_reads_single.bed.gz
51.28 kB
iCount summary
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single_summary_type.tsv
419 B
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single_summary_subtype.tsv
966 B
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single_summary_gene.tsv
152.07 kB
Paraclu
apobec3g-hiv-iiib-gfp-nt7-packaged-protein-in-virions-control-20111026-lue43_trimmed_single_peaks.bed.gz
1.00 kB

APOBEC3G_HIV IIIB_nT7_packaged_protein_in_virions_20111026_LUe43

STAR
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bam.bai
4.17 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.bam
522.66 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_stats.txt
1.81 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_SJ.out.tab
321.32 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_unmapped.out.mate1.fastq.gz
179.97 MB
Paraclu
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_peaks.bed.gz
39.10 kB
FASTQ file (single-end)
fastqc
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43.fastq.gz
267.34 MB
stderr.txt
1.91 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_fastqc.zip
349.70 kB
iCount RNA-maps
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.tar.gz
479.42 kB
Cutadapt (single-end)
report.txt
700 B
fastqc
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed.fastq.gz
275.49 MB
iCount xlsites
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_skipped.bam
4.37 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.bed.gz
732.12 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_reads_single.bed.gz
788.80 kB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single.bedgraph
2.73 MB
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_singleAndMulti.bed.gz
4.15 MB
iCount summary
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_type.tsv
431 B
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_subtype.tsv
1008 B
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43_trimmed_single_summary_gene.tsv
1.08 MB
K-mers
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43
Directory
apobec3g-hiv-iiib-nt7-packaged-protein-in-virions-20111026-lue43.tar.gz
307.28 kB