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Folder iconMatrin3 regulates AS and forms overlapping regulatory networks with PTB

Rahul Arora
Jan. 21, 2020
Matrin3 is an RNA- and DNA-binding nuclear matrix protein found to be associated with neural and muscular degenerative diseases. A number of possible functions of Matrin3 have been suggested, but no widespread role in RNA metabolism has yet been clearly demonstrated. We identified Matrin3 by its interaction with the second RRM domain of the splicing regulator PTB. Using a combination of RNAi knockdown, transcriptome profiling and iCLIP, we find that Matrin3 is a regulator of hundreds of alternative splicing events, principally acting as a splicing repressor with only a small proportion of targeted events being co-regulated by PTB. In contrast to other splicing regulators, Matrin3 binds to an extended region within repressed exons and flanking introns with no sharply defined peaks. The identification of this clear molecular function of Matrin3 should help to clarify the molecular pathology of ALS and other diseases caused by mutations of Matrin3.

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Cutadapt (single-end)
report.txt
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fastqc
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FASTQ file (single-end)
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fastqc
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fastqc
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K-mers
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iCount summary
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iCount RNA-maps
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Paraclu
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Paraclu
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Paraclu
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K-mers
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STAR
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Cutadapt (single-end)
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FASTQ file (single-end)
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K-mers
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Cutadapt (single-end)
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iCount demultiplex (from annotation file)
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FASTQ file (single-end)
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iCount RNA-maps
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STAR
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FASTQ file (single-end)
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FASTQ file (single-end)
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Paraclu
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FASTQ file (single-end)
fastqc
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FASTQ file (single-end)
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fastqc
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FASTQ file (single-end)
fastqc
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FASTQ file (single-end)
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FASTQ file (single-end)
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FASTQ file (single-end)
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FASTQ file (single-end)
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demux_nomatch_fastqc.zip
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iCount RNA-maps
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FASTQ file (single-end)
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fastqc
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FASTQ file (single-end)
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iCount summary
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iCount RNA-maps
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iCount summary
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iCount RNA-maps
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iCount summary
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iCount RNA-maps
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iCount RNA-maps
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iCount RNA-maps
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K-mers
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Paraclu
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iCount summary
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iCount xlsites
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Paraclu
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iCount RNA-maps
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K-mers
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iCount summary
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report.txt
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Paraclu
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iCount RNA-maps
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Cutadapt (single-end)
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fastqc
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report.txt
676 B
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed.fastq.gz
27.68 MB
Cutadapt (single-end)
report.txt
676 B
fastqc
Directory
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed.fastq.gz
57.11 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed.fastq.gz
22.27 MB
STAR
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_SJ.out.tab
23.75 kB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed.bam
12.40 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
2.85 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed.bam.bai
2.91 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed.bw
28.49 kB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_stats.txt
1.79 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed.fastq.gz
32.86 MB
Cutadapt (single-end)
report.txt
677 B
fastqc
Directory
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed.fastq.gz
2.71 MB
STAR
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed.bam.bai
3.10 MB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
2.95 MB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_stats.txt
1.79 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_SJ.out.tab
32.71 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed.bam
16.48 MB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed.bw
31.90 kB
Cutadapt (single-end)
report.txt
678 B
fastqc
Directory
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed.fastq.gz
15.97 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
675 B
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed.fastq.gz
28.97 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed.fastq.gz
212.54 kB
STAR
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed.bam
45.02 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
9.47 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_SJ.out.tab
108.57 kB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_stats.txt
1.80 kB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed.bw
47.56 kB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed.bam.bai
3.66 MB
Cutadapt (single-end)
fastqc
Directory
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed.fastq.gz
161.16 kB
report.txt
676 B
STAR
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
8.25 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed.bam
35.59 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed.bam.bai
3.53 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_SJ.out.tab
66.80 kB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed.bw
40.87 kB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_stats.txt
1.79 kB
STAR
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
930.76 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed.bam
4.67 MB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed.bam.bai
2.32 MB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_stats.txt
1.79 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed.bw
22.39 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_SJ.out.tab
10.30 kB
STAR
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
6.32 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed.bam.bai
3.34 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed.bam
25.63 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_stats.txt
1.79 kB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_SJ.out.tab
46.91 kB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed.bw
34.95 kB
STAR
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
28.90 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed.bam.bai
3.78 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed.bam
124.29 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_stats.txt
1.80 kB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_SJ.out.tab
239.77 kB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed.bw
70.66 kB
STAR
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
11.14 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed.bam.bai
3.70 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed.bam
52.54 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_stats.txt
1.80 kB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed.bw
49.77 kB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_SJ.out.tab
118.70 kB
Upload iCount sample annotation
20110427_LUjh27_annottaion_sheet.tab.gz
996 B
20110427_LUjh27_annottaion_sheet.xlsx
14.71 kB
FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27_fastqc.zip
335.06 kB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27.fastq.gz
85.32 MB
stderr.txt
1.23 kB
STAR
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
13.28 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed.bam.bai
1.35 MB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_stats.txt
1.77 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_SJ.out.tab
73 B
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed.bam
51.69 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed.bw
16.41 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
436 B
STAR
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed.bam.bai
1.51 MB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_stats.txt
1.78 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed.bam
345.33 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
97.56 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_SJ.out.tab
875 B
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed.bw
17.51 kB
STAR
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed.bam.bai
1.47 MB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
78.59 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_stats.txt
1.78 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed.bam
285.36 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_SJ.out.tab
834 B
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed.bw
17.77 kB
FASTQ file (single-end)
stderr.txt
1.26 kB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-2.fastq.gz
51.86 MB
ptbp1-hela-wt-20110427-lujh27-2_fastqc.zip
335.50 kB
STAR
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed.bam.bai
1.35 MB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed.bw
15.75 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
12.08 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed.bam
38.74 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_SJ.out.tab
34 B
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_stats.txt
1.77 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_subtype.tsv
1013 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_gene.tsv
1.43 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_peaks.bed.gz
91.14 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.tar.gz
910.74 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_subtype.tsv
1010 B
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_gene.tsv
1.27 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.tar.gz
733.40 kB
Paraclu
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_peaks.bed.gz
42.16 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.tar.gz
1.12 MB
K-mers
ptbp1-hela-wt-20110427-lujh27-1.tar.gz
475.01 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz
159.61 MB
Cutadapt (single-end)
report.txt
664 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz
86.47 MB
iCount summary
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_type.tsv
431 B
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_gene.tsv
1.42 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_subtype.tsv
1014 B
Paraclu
ptbp1-hela-wt-20110427-lujh27_trimmed_single_peaks.bed.gz
102.75 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27_trimmed_single.tar.gz
894.70 kB
iCount summary
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single_summary_type.tsv
415 B
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single_summary_subtype.tsv
899 B
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single_summary_gene.tsv
437.39 kB
K-mers
ptbp1-hela-wt-20110427-lujh27.tar.gz
429.82 kB
Paraclu
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single_peaks.bed.gz
275 B
iCount RNA-maps
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single.tar.gz
413.73 kB
K-mers
ptbp1-hela-noab-wt-20110427-lujh27.tar.gz
137 B
STAR
ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz
7.38 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai
3.69 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam
88.86 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw
69.63 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab
107.79 kB
STAR
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.76 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
142.46 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw
91.05 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
ptbp1-hela-noab-wt-20110427-lujh27_trimmed.fastq.gz
1.01 MB
STAR
ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz
22.60 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam
266.62 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai
3.68 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab
329.70 kB
iCount xlsites
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_reads_single.bed.gz
677.97 kB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
1.15 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single.bedgraph
2.67 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single.bed.gz
654.43 kB
iCount xlsites
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_skipped.bam
3.12 kB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
4.08 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single.bed.gz
2.37 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_reads_single.bed.gz
2.46 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single.bedgraph
10.52 MB
iCount xlsites
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_single.bed.gz
977.09 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_reads_single.bed.gz
1015.47 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
1.61 MB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_single.bedgraph
4.08 MB
STAR
ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai
3.80 MB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam
146.28 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
11.36 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27_trimmed.bw
91.82 kB
ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab
185.52 kB
iCount xlsites
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_skipped.bam
3.41 kB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_reads_single.bed.gz
5.14 MB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single.bedgraph
22.62 MB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
8.60 MB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single.bed.gz
4.96 MB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-2_trimmed_reads_single.bed.gz
5.08 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.bedgraph
23.54 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_skipped.bam
3.24 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_singleAndMulti.bed.gz
7.62 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.bed.gz
5.03 MB
iCount xlsites
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_skipped.bam
2.90 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single.bed.gz
113.91 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_singleAndMulti.bed.gz
215.22 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_reads_single.bed.gz
115.57 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single.bedgraph
434.49 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_type.tsv
437 B
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_subtype.tsv
1.00 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_gene.tsv
1.61 MB
iCount xlsites
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
3.13 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_single.bed.gz
1.80 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_single.bedgraph
7.93 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_reads_single.bed.gz
1.87 MB
K-mers
ptbp1-hela-wt-20110427-lujh27-3.tar.gz
430.83 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-3_trimmed_skipped.bam
3.32 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.bedgraph
38.99 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_reads_single.bed.gz
8.30 MB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.bed.gz
14.87 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.bedgraph
71.37 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_singleAndMulti.bed.gz
21.85 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_reads_single.bed.gz
15.00 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_skipped.bam
3.56 kB
iCount xlsites
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_single.bedgraph
12.74 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
4.75 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_skipped.bam
3.28 kB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_single.bed.gz
2.85 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_reads_single.bed.gz
2.95 MB
iCount xlsites
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
2.22 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_reads_single.bed.gz
1.29 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_single.bed.gz
1.24 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_single.bedgraph
5.39 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
iCount xlsites
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single.bed.gz
6.06 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single.bedgraph
27.66 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_reads_single.bed.gz
6.26 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
10.28 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_skipped.bam
3.32 kB
iCount xlsites
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_single.bedgraph
1.02 MB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_reads_single.bed.gz
270.81 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
489.57 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_single.bed.gz
261.43 kB
iCount xlsites
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single.bed.gz
17.71 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_reads_single.bed.gz
18.22 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single.bedgraph
59.86 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
34.52 kB
iCount xlsites
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single.bed.gz
2.14 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_reads_single.bed.gz
2.20 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
4.03 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single.bedgraph
6.74 kB
iCount summary
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single_summary_subtype.tsv
1006 B
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single_summary_type.tsv
433 B
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single_summary_gene.tsv
1.17 MB
iCount summary
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single_summary_subtype.tsv
1015 B
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single_summary_type.tsv
434 B
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single_summary_gene.tsv
1.31 MB
Paraclu
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single_peaks.bed.gz
141 B
Paraclu
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_single_peaks.bed.gz
91 B
iCount summary
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single_summary_type.tsv
397 B
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single_summary_subtype.tsv
680 B
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single_summary_gene.tsv
16.51 kB
iCount summary
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single_summary_gene.tsv
55.43 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single_summary_type.tsv
396 B
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single_summary_subtype.tsv
625 B
iCount summary
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single_summary_gene.tsv
108.09 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single_summary_subtype.tsv
763 B
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single_summary_type.tsv
404 B
iCount summary
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single_summary_type.tsv
435 B
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single_summary_subtype.tsv
1018 B
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single_summary_gene.tsv
1.43 MB
iCount summary
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single_summary_type.tsv
373 B
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single_summary_gene.tsv
14.78 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single_summary_subtype.tsv
538 B

MATR3_Hela_noAb_repl2_LMW_20130831_LUg36

Paraclu
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single_peaks.bed.gz
91 B
iCount RNA-maps
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single.tar.gz
148.76 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hela-noab-repl2-lmw-20130831-lug36.fastq.gz
29.19 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_fastqc.zip
414.26 kB
stderr.txt
70 B
iCount xlsites
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single.bed.gz
2.40 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
6.51 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single.bedgraph
7.58 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_reads_single.bed.gz
2.46 kB
K-mers
matr3-hela-noab-repl2-lmw-20130831-lug36.tar.gz
140 B
Cutadapt (single-end)
fastqc
Directory
report.txt
675 B
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed.fastq.gz
28.97 kB
STAR
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
13.28 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed.bam.bai
1.35 MB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_stats.txt
1.77 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_SJ.out.tab
73 B
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed.bam
51.69 kB
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed.bw
16.41 kB
iCount summary
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single_summary_type.tsv
397 B
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single_summary_subtype.tsv
680 B
matr3-hela-noab-repl2-lmw-20130831-lug36_trimmed_single_summary_gene.tsv
16.51 kB

MATR3_Hela_repl1_RNase75_LMW_20130831_LUg36

iCount RNA-maps
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single.tar.gz
760.84 kB
Paraclu
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single_peaks.bed.gz
4.56 kB
K-mers
matr3-hela-repl1-rnase75-lmw-20130831-lug36.tar.gz
328.02 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed.fastq.gz
77.85 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.50 kB
matr3-hela-repl1-rnase75-lmw-20130831-lug36.fastq.gz
76.05 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_fastqc.zip
357.78 kB
STAR
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
28.90 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed.bam.bai
3.78 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed.bam
124.29 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_stats.txt
1.80 kB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_SJ.out.tab
239.77 kB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed.bw
70.66 kB
iCount xlsites
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single.bed.gz
6.06 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single.bedgraph
27.66 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_reads_single.bed.gz
6.26 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
10.28 MB
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_skipped.bam
3.32 kB
iCount summary
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single_summary_type.tsv
435 B
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single_summary_subtype.tsv
1018 B
matr3-hela-repl1-rnase75-lmw-20130831-lug36_trimmed_single_summary_gene.tsv
1.43 MB

MATR3_Hela_repl1_RNase_MMW_20130831_LUg36

K-mers
matr3-hela-repl1-rnase-mmw-20130831-lug36.tar.gz
155.47 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hela-repl1-rnase-mmw-20130831-lug36.fastq.gz
21.75 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_fastqc.zip
351.57 kB
stderr.txt
1.46 kB
iCount summary
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_single_summary_type.tsv
426 B
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_single_summary_subtype.tsv
993 B
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_single_summary_gene.tsv
1.05 MB
Paraclu
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_single_peaks.bed.gz
338 B
iCount RNA-maps
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_single.tar.gz
558.91 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed.fastq.gz
22.27 MB
STAR
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
8.25 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed.bam
35.59 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed.bam.bai
3.53 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_SJ.out.tab
66.80 kB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed.bw
40.87 kB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_stats.txt
1.79 kB
iCount xlsites
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
3.13 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_single.bed.gz
1.80 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_single.bedgraph
7.93 MB
matr3-hela-repl1-rnase-mmw-20130831-lug36_trimmed_reads_single.bed.gz
1.87 MB

MATR3_Hela_repl2_RNase_MMW_20130831_LUg36

Paraclu
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_single_peaks.bed.gz
186 B
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed.fastq.gz
10.14 MB
K-mers
matr3-hela-repl2-rnase-mmw-20130831-lug36.tar.gz
138.35 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hela-repl2-rnase-mmw-20130831-lug36.fastq.gz
9.90 MB
stderr.txt
1.46 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_fastqc.zip
355.22 kB
iCount summary
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_single_summary_type.tsv
423 B
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_single_summary_gene.tsv
899.13 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_single_summary_subtype.tsv
986 B
iCount RNA-maps
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_single.tar.gz
515.55 kB
STAR
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed.bam.bai
3.10 MB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
2.95 MB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_stats.txt
1.79 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_SJ.out.tab
32.71 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed.bam
16.48 MB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed.bw
31.90 kB
iCount xlsites
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_single.bed.gz
977.09 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_reads_single.bed.gz
1015.47 kB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
1.61 MB
matr3-hela-repl2-rnase-mmw-20130831-lug36_trimmed_single.bedgraph
4.08 MB

MATR3_Hela_repl2_RNase_HMW_20130831_LUg36

iCount RNA-maps
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single.tar.gz
450.00 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hela-repl2-rnase-hmw-20130831-lug36.fastq.gz
7.44 MB
stderr.txt
1.46 kB
matr3-hela-repl2-rnase-hmw-20130831-lug36_fastqc.zip
367.23 kB
iCount summary
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single_summary_subtype.tsv
985 B
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single_summary_type.tsv
423 B
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single_summary_gene.tsv
779.30 kB
K-mers
matr3-hela-repl2-rnase-hmw-20130831-lug36.tar.gz
126.59 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed.fastq.gz
7.56 MB
STAR
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_SJ.out.tab
23.75 kB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed.bam
12.40 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
2.85 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed.bam.bai
2.91 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed.bw
28.49 kB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_stats.txt
1.79 kB
iCount xlsites
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_reads_single.bed.gz
677.97 kB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
1.15 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single.bedgraph
2.67 MB
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single.bed.gz
654.43 kB
Paraclu
matr3-hela-repl2-rnase-hmw-20130831-lug36_trimmed_single_peaks.bed.gz
141 B

LUg36.fastq.gz

FASTQ file (single-end)
fastqc
Directory
LUg36.fastq.gz
280.98 MB
LUg36_fastqc.zip
398.99 kB
stderr.txt
775 B

PTB_20110427_LUjh27_SLX-3677.CRIRUN_606.s_2.sequence.fq.gz

FASTQ file (single-end)
fastqc
Directory
PTB_20110427_LUjh27_SLX-3677.CRIRUN_606.s_2.sequence.fastq.gz
487.35 MB
PTB_20110427_LUjh27_SLX-3677.CRIRUN_606.s_2.sequence_fastqc.zip
510.61 kB
stderr.txt
1.67 kB

MATR3_Hela_repl1_RNase_LMW_20130831_LUg36

K-mers
matr3-hela-repl1-rnase-lmw-20130831-lug36.tar.gz
226.92 kB
iCount RNA-maps
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_single.tar.gz
641.43 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hela-repl1-rnase-lmw-20130831-lug36.fastq.gz
32.06 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_fastqc.zip
353.72 kB
stderr.txt
1.46 kB
iCount summary
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_single_summary_type.tsv
434 B
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_single_summary_gene.tsv
1.20 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_single_summary_subtype.tsv
1012 B
Paraclu
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_single_peaks.bed.gz
768 B
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed.fastq.gz
32.86 MB
STAR
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
11.14 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed.bam.bai
3.70 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed.bam
52.54 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_stats.txt
1.80 kB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed.bw
49.77 kB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_SJ.out.tab
118.70 kB
iCount xlsites
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_single.bedgraph
12.74 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
4.75 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_skipped.bam
3.28 kB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_single.bed.gz
2.85 MB
matr3-hela-repl1-rnase-lmw-20130831-lug36_trimmed_reads_single.bed.gz
2.95 MB

MATR3_Hela_noAb_repl2_HMW_20130831_LUg36

FASTQ file (single-end)
fastqc
Directory
matr3-hela-noab-repl2-hmw-20130831-lug36.fastq.gz
146.33 kB
stderr.txt
440 B
matr3-hela-noab-repl2-hmw-20130831-lug36_fastqc.zip
595.37 kB
Paraclu
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single_peaks.bed.gz
91 B
STAR
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_stats.txt
1.77 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed.bam.bai
1.44 MB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed.bam
209.68 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed.bw
16.20 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
94.14 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_SJ.out.tab
403 B
iCount xlsites
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single.bed.gz
8.50 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
15.73 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_reads_single.bed.gz
8.70 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single.bedgraph
27.86 kB
iCount RNA-maps
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single.tar.gz
176.61 kB
K-mers
matr3-hela-noab-repl2-hmw-20130831-lug36.tar.gz
143 B
Cutadapt (single-end)
fastqc
Directory
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed.fastq.gz
148.81 kB
report.txt
675 B
iCount summary
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single_summary_gene.tsv
55.43 kB
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single_summary_type.tsv
396 B
matr3-hela-noab-repl2-hmw-20130831-lug36_trimmed_single_summary_subtype.tsv
625 B

MATR3_Hela_repl1_RNase75_MMW_20130831_LUg36

iCount summary
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_single_summary_type.tsv
423 B
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_single_summary_subtype.tsv
993 B
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_single_summary_gene.tsv
945.97 kB
FASTQ file (single-end)
matr3-hela-repl1-rnase75-mmw-20130831-lug36.fastq.gz
15.59 MB
stderr.txt
1.50 kB
fastqc
Directory
matr3-hela-repl1-rnase75-mmw-20130831-lug36_fastqc.zip
351.49 kB
iCount RNA-maps
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_single.tar.gz
497.09 kB
Paraclu
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_single_peaks.bed.gz
320 B
K-mers
matr3-hela-repl1-rnase75-mmw-20130831-lug36.tar.gz
144.88 kB
Cutadapt (single-end)
report.txt
678 B
fastqc
Directory
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed.fastq.gz
15.97 MB
STAR
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
6.32 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed.bam.bai
3.34 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed.bam
25.63 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_stats.txt
1.79 kB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_SJ.out.tab
46.91 kB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed.bw
34.95 kB
iCount xlsites
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
2.22 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_reads_single.bed.gz
1.29 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_single.bed.gz
1.24 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_single.bedgraph
5.39 MB
matr3-hela-repl1-rnase75-mmw-20130831-lug36_trimmed_skipped.bam
2.90 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
14.35 MB
demux_nomatch_fastqc.zip
425.72 kB
fastqc
Directory
stderr.txt
935 B

MATR3_Hela_repl1_RNase75_HMW_20130831_LUg36

iCount summary
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_single_summary_type.tsv
417 B
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_single_summary_subtype.tsv
845 B
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_single_summary_gene.tsv
521.47 kB
iCount RNA-maps
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_single.tar.gz
381.05 kB
Paraclu
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_single_peaks.bed.gz
94 B
FASTQ file (single-end)
fastqc
Directory
matr3-hela-repl1-rnase75-hmw-20130831-lug36.fastq.gz
2.67 MB
stderr.txt
1.50 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_fastqc.zip
371.80 kB
K-mers
matr3-hela-repl1-rnase75-hmw-20130831-lug36.tar.gz
145 B
Cutadapt (single-end)
report.txt
677 B
fastqc
Directory
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed.fastq.gz
2.71 MB
STAR
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
930.76 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed.bam
4.67 MB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed.bam.bai
2.32 MB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_stats.txt
1.79 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed.bw
22.39 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_SJ.out.tab
10.30 kB
iCount xlsites
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_single.bedgraph
1.02 MB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_reads_single.bed.gz
270.81 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
489.57 kB
matr3-hela-repl1-rnase75-hmw-20130831-lug36_trimmed_single.bed.gz
261.43 kB

MATR3_Hela_noAb_repl1_MMW_20130831_LUg36

K-mers
matr3-hela-noab-repl1-mmw-20130831-lug36.tar.gz
142 B
iCount RNA-maps
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_single.tar.gz
284.27 kB
iCount xlsites
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
27.88 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_single.bed.gz
11.49 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_reads_single.bed.gz
11.82 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_single.bedgraph
37.86 kB
FASTQ file (single-end)
stderr.txt
514 B
fastqc
Directory
matr3-hela-noab-repl1-mmw-20130831-lug36_fastqc.zip
533.87 kB
matr3-hela-noab-repl1-mmw-20130831-lug36.fastq.gz
173.13 kB
iCount summary
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_single_summary_type.tsv
400 B
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_single_summary_subtype.tsv
809 B
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_single_summary_gene.tsv
77.70 kB
Cutadapt (single-end)
fastqc
Directory
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed.fastq.gz
161.16 kB
report.txt
676 B
STAR
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed.bam.bai
1.47 MB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
78.59 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_stats.txt
1.78 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed.bam
285.36 kB
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_SJ.out.tab
834 B
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed.bw
17.77 kB
Paraclu
matr3-hela-noab-repl1-mmw-20130831-lug36_trimmed_single_peaks.bed.gz
91 B

MATR3_Hela_noAb_repl1_HMW_20130831_LUg36

FASTQ file (single-end)
fastqc
Directory
matr3-hela-noab-repl1-hmw-20130831-lug36_fastqc.zip
512.64 kB
matr3-hela-noab-repl1-hmw-20130831-lug36.fastq.gz
223.07 kB
stderr.txt
588 B
Paraclu
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single_peaks.bed.gz
91 B
iCount RNA-maps
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single.tar.gz
236.28 kB
K-mers
matr3-hela-noab-repl1-hmw-20130831-lug36.tar.gz
141 B
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed.fastq.gz
212.54 kB
STAR
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed.bam.bai
1.51 MB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_stats.txt
1.78 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed.bam
345.33 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
97.56 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_SJ.out.tab
875 B
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed.bw
17.51 kB
iCount xlsites
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single.bed.gz
17.71 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_reads_single.bed.gz
18.22 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single.bedgraph
59.86 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
34.52 kB
iCount summary
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single_summary_gene.tsv
108.09 kB
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single_summary_subtype.tsv
763 B
matr3-hela-noab-repl1-hmw-20130831-lug36_trimmed_single_summary_type.tsv
404 B

MATR3_Hela_noAb_repl2_MMW_20130831_LUg36

K-mers
matr3-hela-noab-repl2-mmw-20130831-lug36.tar.gz
142 B
iCount xlsites
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_single.bed.gz
4.70 kB
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
10.40 kB
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_single.bedgraph
15.04 kB
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_reads_single.bed.gz
4.84 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
144 B
matr3-hela-noab-repl2-mmw-20130831-lug36.fastq.gz
60.35 kB
matr3-hela-noab-repl2-mmw-20130831-lug36_fastqc.zip
435.88 kB
STAR
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed.bam.bai
1.41 MB
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_SJ.out.tab
295 B
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
28.96 kB
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed.bam
98.61 kB
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_stats.txt
1.77 kB
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed.bw
16.49 kB
iCount RNA-maps
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_single.tar.gz
206.88 kB
Paraclu
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_single_peaks.bed.gz
91 B
iCount summary
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_single_summary_subtype.tsv
558 B
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_single_summary_gene.tsv
31.20 kB
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed_single_summary_type.tsv
395 B
Cutadapt (single-end)
report.txt
675 B
fastqc
Directory
matr3-hela-noab-repl2-mmw-20130831-lug36_trimmed.fastq.gz
59.31 kB

MATR3_Hela_noAb_repl1_LMW_20130831_LUg36

K-mers
matr3-hela-noab-repl1-lmw-20130831-lug36.tar.gz
141 B
FASTQ file (single-end)
matr3-hela-noab-repl1-lmw-20130831-lug36.fastq.gz
26.74 kB
fastqc
Directory
stderr.txt
70 B
matr3-hela-noab-repl1-lmw-20130831-lug36_fastqc.zip
454.16 kB
Cutadapt (single-end)
fastqc
Directory
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed.fastq.gz
23.61 kB
report.txt
676 B
Paraclu
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single_peaks.bed.gz
91 B
iCount RNA-maps
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single.tar.gz
91.91 kB
STAR
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed.bam.bai
1.35 MB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed.bw
15.75 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
12.08 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed.bam
38.74 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_SJ.out.tab
34 B
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_stats.txt
1.77 kB
iCount xlsites
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single.bed.gz
2.14 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_skipped.bam
2.90 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_reads_single.bed.gz
2.20 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
4.03 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single.bedgraph
6.74 kB
iCount summary
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single_summary_type.tsv
373 B
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single_summary_gene.tsv
14.78 kB
matr3-hela-noab-repl1-lmw-20130831-lug36_trimmed_single_summary_subtype.tsv
538 B

MATR3_Hela_repl1_RNase_HMW_20130831_LUg36

STAR
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
18.11 MB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed.bam.bai
3.81 MB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed.bam
93.59 MB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_stats.txt
1.80 kB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_SJ.out.tab
184.48 kB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed.bw
63.04 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hela-repl1-rnase-hmw-20130831-lug36.fastq.gz
55.75 MB
stderr.txt
1.46 kB
matr3-hela-repl1-rnase-hmw-20130831-lug36_fastqc.zip
348.66 kB
iCount RNA-maps
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single.tar.gz
660.28 kB
Paraclu
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single_peaks.bed.gz
4.28 kB
K-mers
matr3-hela-repl1-rnase-hmw-20130831-lug36.tar.gz
264.33 kB
Cutadapt (single-end)
report.txt
676 B
fastqc
Directory
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed.fastq.gz
57.11 MB
iCount xlsites
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_skipped.bam
3.41 kB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_reads_single.bed.gz
5.14 MB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single.bedgraph
22.62 MB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
8.60 MB
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single.bed.gz
4.96 MB
iCount summary
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single_summary_subtype.tsv
1015 B
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single_summary_type.tsv
434 B
matr3-hela-repl1-rnase-hmw-20130831-lug36_trimmed_single_summary_gene.tsv
1.31 MB

MATR3_Hela_repl2_RNase_LMW_20130831_LUg36

Paraclu
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single_peaks.bed.gz
763 B
iCount RNA-maps
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single.tar.gz
631.70 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hela-repl2-rnase-lmw-20130831-lug36_fastqc.zip
355.04 kB
stderr.txt
1.46 kB
matr3-hela-repl2-rnase-lmw-20130831-lug36.fastq.gz
27.02 MB
K-mers
matr3-hela-repl2-rnase-lmw-20130831-lug36.tar.gz
160.92 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed.fastq.gz
27.68 MB
STAR
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed.bam
45.02 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_unmapped.out.mate1.fastq.gz
9.47 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_SJ.out.tab
108.57 kB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_stats.txt
1.80 kB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed.bw
47.56 kB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed.bam.bai
3.66 MB
iCount xlsites
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_skipped.bam
3.12 kB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_singleAndMulti.bed.gz
4.08 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single.bed.gz
2.37 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_reads_single.bed.gz
2.46 MB
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single.bedgraph
10.52 MB
iCount summary
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single_summary_subtype.tsv
1006 B
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single_summary_type.tsv
433 B
matr3-hela-repl2-rnase-lmw-20130831-lug36_trimmed_single_summary_gene.tsv
1.17 MB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
29.70 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
461.36 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
461.36 kB
demux_nomatch.fastq.gz
29.70 MB

PTBP1_Hela_WT_20110427_LUjh27

iCount xlsites
ptbp1-hela-wt-20110427-lujh27_trimmed_skipped.bam
3.49 kB
ptbp1-hela-wt-20110427-lujh27_trimmed_single.bedgraph
40.72 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_single.bed.gz
8.58 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_singleAndMulti.bed.gz
12.71 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_reads_single.bed.gz
8.64 MB
FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27_fastqc.zip
335.06 kB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27.fastq.gz
85.32 MB
stderr.txt
1.23 kB
Cutadapt (single-end)
report.txt
664 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz
86.47 MB
iCount summary
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_type.tsv
431 B
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_gene.tsv
1.42 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_subtype.tsv
1014 B
Paraclu
ptbp1-hela-wt-20110427-lujh27_trimmed_single_peaks.bed.gz
102.75 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27_trimmed_single.tar.gz
894.70 kB
K-mers
ptbp1-hela-wt-20110427-lujh27.tar.gz
429.82 kB
STAR
ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai
3.80 MB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam
146.28 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
11.36 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27_trimmed.bw
91.82 kB
ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab
185.52 kB

PTBP1_Hela_WT_20110427_LUjh27_1

FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-1.fastq.gz
157.55 MB
ptbp1-hela-wt-20110427-lujh27-1_fastqc.zip
332.89 kB
stderr.txt
1.26 kB
Paraclu
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_peaks.bed.gz
255.26 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.tar.gz
1.12 MB
K-mers
ptbp1-hela-wt-20110427-lujh27-1.tar.gz
475.01 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz
159.61 MB
STAR
ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz
22.60 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam
266.62 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai
3.68 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab
329.70 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_type.tsv
437 B
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_subtype.tsv
1.00 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_gene.tsv
1.61 MB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.bed.gz
14.87 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.bedgraph
71.37 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_singleAndMulti.bed.gz
21.85 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_reads_single.bed.gz
15.00 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_skipped.bam
3.56 kB

PTBP1_Hela_WT_20110427_LUjh27_3

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.26 kB
ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip
335.37 kB
ptbp1-hela-wt-20110427-lujh27-3.fastq.gz
81.06 MB
iCount summary
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_subtype.tsv
1013 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_gene.tsv
1.43 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_peaks.bed.gz
91.14 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.tar.gz
910.74 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
STAR
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.76 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
142.46 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw
91.05 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
K-mers
ptbp1-hela-wt-20110427-lujh27-3.tar.gz
430.83 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-3_trimmed_skipped.bam
3.32 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.bedgraph
38.99 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_reads_single.bed.gz
8.30 MB

PTBP1_Hela_noAB_WT_20110427_LUjh27

STAR
ptbp1-hela-noab-wt-20110427-lujh27_trimmed.bam
2.52 MB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed.bam.bai
1.78 MB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
152.64 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed.bw
22.52 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_SJ.out.tab
4.90 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_stats.txt
1.79 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.32 kB
ptbp1-hela-noab-wt-20110427-lujh27_fastqc.zip
354.02 kB
ptbp1-hela-noab-wt-20110427-lujh27.fastq.gz
1.05 MB
iCount summary
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single_summary_type.tsv
415 B
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single_summary_subtype.tsv
899 B
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single_summary_gene.tsv
437.39 kB
Paraclu
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single_peaks.bed.gz
275 B
iCount RNA-maps
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single.tar.gz
413.73 kB
K-mers
ptbp1-hela-noab-wt-20110427-lujh27.tar.gz
137 B
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
ptbp1-hela-noab-wt-20110427-lujh27_trimmed.fastq.gz
1.01 MB
iCount xlsites
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_skipped.bam
2.90 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single.bed.gz
113.91 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_singleAndMulti.bed.gz
215.22 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_reads_single.bed.gz
115.57 kB
ptbp1-hela-noab-wt-20110427-lujh27_trimmed_single.bedgraph
434.49 kB

PTBP1_Hela_WT_20110427_LUjh27_2

K-mers
ptbp1-hela-wt-20110427-lujh27-2.tar.gz
395.75 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
ptbp1-hela-wt-20110427-lujh27-2_trimmed.fastq.gz
52.09 MB
FASTQ file (single-end)
stderr.txt
1.26 kB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-2.fastq.gz
51.86 MB
ptbp1-hela-wt-20110427-lujh27-2_fastqc.zip
335.50 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_subtype.tsv
1010 B
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_gene.tsv
1.27 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.tar.gz
733.40 kB
Paraclu
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_peaks.bed.gz
42.16 kB
STAR
ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz
7.38 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai
3.69 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam
88.86 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw
69.63 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab
107.79 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-2_trimmed_reads_single.bed.gz
5.08 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.bedgraph
23.54 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_skipped.bam
3.24 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_singleAndMulti.bed.gz
7.62 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.bed.gz
5.03 MB