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Rahul Arora
Jan. 17, 2020

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
492.37 kB
demux_nomatch.fastq.gz
3.11 GB

PTBP1_HEK293_MatrKD_L_20150527_Ja

K-mers
ptbp1-hek293-matrkd-l-20150527-ja.tar.gz
333.83 kB
iCount summary
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single_summary_type.tsv
432 B
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single_summary_subtype.tsv
1006 B
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single_summary_gene.tsv
1.22 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-matrkd-l-20150527-ja.fastq.gz
71.64 MB
stderr.txt
1.30 kB
ptbp1-hek293-matrkd-l-20150527-ja_fastqc.zip
418.07 kB
Paraclu
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single_peaks.bed.gz
6.02 kB
iCount RNA-maps
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single.tar.gz
614.35 kB
Cutadapt (single-end)
ptbp1-hek293-matrkd-l-20150527-ja_trimmed.fastq.gz
72.79 MB
fastqc
Directory
report.txt
668 B
iCount xlsites
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single.bed.gz
1.67 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_singleAndMulti.bed.gz
3.14 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_skipped.bam
3.26 kB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_reads_single.bed.gz
1.92 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single.bedgraph
7.34 MB
STAR
ptbp1-hek293-matrkd-l-20150527-ja_trimmed.bam
88.97 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
17.43 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed.bam.bai
3.92 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_stats.txt
1.80 kB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_SJ.out.tab
110.44 kB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed.bw
40.92 kB

PTBP1_HEK293_MatrKD_H_20150527_Ja_1

iCount RNA-maps
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single.tar.gz
927.44 kB
K-mers
ptbp1-hek293-matrkd-h-20150527-ja-1.tar.gz
439.08 kB
iCount summary
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single_summary_subtype.tsv
1.00 kB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single_summary_type.tsv
437 B
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single_summary_gene.tsv
1.69 MB
Paraclu
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single_peaks.bed.gz
84.33 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.34 kB
ptbp1-hek293-matrkd-h-20150527-ja-1_fastqc.zip
399.34 kB
ptbp1-hek293-matrkd-h-20150527-ja-1.fastq.gz
439.29 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
671 B
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed.fastq.gz
446.46 MB
iCount xlsites
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_skipped.bam
4.87 kB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_reads_single.bed.gz
8.91 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_singleAndMulti.bed.gz
13.89 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single.bed.gz
7.72 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single.bedgraph
35.88 MB
STAR
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed.bam.bai
3.87 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_unmapped.out.mate1.fastq.gz
112.01 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_SJ.out.tab
641.59 kB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed.bam
523.41 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_stats.txt
1.81 kB

MATR3_HEK293_PTBKD_L_20150527_Ja

iCount RNA-maps
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single.tar.gz
184.77 kB
STAR
matr3-hek293-ptbkd-l-20150527-ja_trimmed_stats.txt
1.78 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed.bw
15.84 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed.bam
144.06 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed.bam.bai
1.41 MB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_SJ.out.tab
150 B
matr3-hek293-ptbkd-l-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
24.15 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hek293-ptbkd-l-20150527-ja_fastqc.zip
516.07 kB
matr3-hek293-ptbkd-l-20150527-ja.fastq.gz
107.27 kB
stderr.txt
194 B
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
matr3-hek293-ptbkd-l-20150527-ja_trimmed.fastq.gz
109.57 kB
Paraclu
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single_peaks.bed.gz
83 B
iCount summary
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single_summary_type.tsv
399 B
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single_summary_subtype.tsv
499 B
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single_summary_gene.tsv
25.98 kB
K-mers
matr3-hek293-ptbkd-l-20150527-ja.tar.gz
136 B
iCount xlsites
matr3-hek293-ptbkd-l-20150527-ja_trimmed_reads_single.bed.gz
3.80 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_singleAndMulti.bed.gz
6.08 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single.bedgraph
10.78 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single.bed.gz
3.39 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_skipped.bam
2.90 kB

MATR3_HEK293_siCtrl_L_20150527_Ja

Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
matr3-hek293-sictrl-l-20150527-ja_trimmed.fastq.gz
328.11 MB
FASTQ file (single-end)
matr3-hek293-sictrl-l-20150527-ja_fastqc.zip
392.72 kB
fastqc
Directory
stderr.txt
1.30 kB
matr3-hek293-sictrl-l-20150527-ja.fastq.gz
322.51 MB
iCount summary
matr3-hek293-sictrl-l-20150527-ja_trimmed_single_summary_type.tsv
437 B
matr3-hek293-sictrl-l-20150527-ja_trimmed_single_summary_subtype.tsv
1017 B
matr3-hek293-sictrl-l-20150527-ja_trimmed_single_summary_gene.tsv
1.61 MB
iCount RNA-maps
matr3-hek293-sictrl-l-20150527-ja_trimmed_single.tar.gz
878.03 kB
iCount xlsites
matr3-hek293-sictrl-l-20150527-ja_trimmed_skipped.bam
4.71 kB
matr3-hek293-sictrl-l-20150527-ja_trimmed_single.bed.gz
5.22 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed_single.bedgraph
23.54 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed_singleAndMulti.bed.gz
9.64 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed_reads_single.bed.gz
6.02 MB
Paraclu
matr3-hek293-sictrl-l-20150527-ja_trimmed_single_peaks.bed.gz
4.22 kB
STAR
matr3-hek293-sictrl-l-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
109.21 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed.bam
379.52 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed.bam.bai
3.91 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed_stats.txt
1.81 kB
matr3-hek293-sictrl-l-20150527-ja_trimmed_SJ.out.tab
603.79 kB
K-mers
matr3-hek293-sictrl-l-20150527-ja.tar.gz
375.87 kB

MATR3_HEK293_PTBKD_H_20150527_Ja

Paraclu
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single_peaks.bed.gz
83 B
FASTQ file (single-end)
matr3-hek293-ptbkd-h-20150527-ja.fastq.gz
39.95 kB
matr3-hek293-ptbkd-h-20150527-ja_fastqc.zip
495.72 kB
fastqc
Directory
stderr.txt
128 B
iCount RNA-maps
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single.tar.gz
67.28 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
matr3-hek293-ptbkd-h-20150527-ja_trimmed.fastq.gz
40.66 kB
STAR
matr3-hek293-ptbkd-h-20150527-ja_trimmed_stats.txt
1.78 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed.bam
59.05 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed.bam.bai
1.32 MB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_SJ.out.tab
185 B
matr3-hek293-ptbkd-h-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
13.11 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed.bw
15.54 kB
iCount summary
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single_summary_type.tsv
391 B
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single_summary_subtype.tsv
494 B
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single_summary_gene.tsv
11.61 kB
K-mers
matr3-hek293-ptbkd-h-20150527-ja.tar.gz
136 B
iCount xlsites
matr3-hek293-ptbkd-h-20150527-ja_trimmed_skipped.bam
2.90 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_singleAndMulti.bed.gz
3.03 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single.bed.gz
1.62 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_reads_single.bed.gz
1.79 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single.bedgraph
5.04 kB

20150527_Ja_Hs_HEK293T_cell_line.fastq.gz

FASTQ file (single-end)
fastqc
Directory
20150527_Ja_Hs_HEK293T_cell_line.fastq.gz
8.06 GB
stderr.txt
1.28 kB
20150527_Ja_Hs_HEK293T_cell_line_fastqc.zip
490.97 kB

PTBP1_HEK293_MatrKD_H_20150527_Ja

Paraclu
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single_peaks.bed.gz
324 B
STAR
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
1.56 MB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed.bam.bai
2.09 MB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_stats.txt
1.79 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed.bam
8.77 MB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_SJ.out.tab
12.98 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed.bw
22.62 kB
K-mers
ptbp1-hek293-matrkd-h-20150527-ja.tar.gz
133.85 kB
iCount xlsites
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_skipped.bam
2.90 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single.bed.gz
188.48 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single.bedgraph
732.33 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_reads_single.bed.gz
214.16 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_singleAndMulti.bed.gz
340.63 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.30 kB
ptbp1-hek293-matrkd-h-20150527-ja_fastqc.zip
436.04 kB
ptbp1-hek293-matrkd-h-20150527-ja.fastq.gz
7.17 MB
iCount summary
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single_summary_type.tsv
418 B
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single_summary_subtype.tsv
971 B
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single_summary_gene.tsv
557.02 kB
iCount RNA-maps
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single.tar.gz
402.00 kB
Cutadapt (single-end)
report.txt
668 B
fastqc
Directory
ptbp1-hek293-matrkd-h-20150527-ja_trimmed.fastq.gz
7.27 MB

PTBP1_HEK293_MatrKD_L_20150527_Ja_1

Paraclu
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single_peaks.bed.gz
3.19 kB
iCount RNA-maps
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single.tar.gz
558.43 kB
K-mers
ptbp1-hek293-matrkd-l-20150527-ja-1.tar.gz
318.23 kB
STAR
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_unmapped.out.mate1.fastq.gz
13.13 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed.bam
68.87 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_stats.txt
1.80 kB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed.bam.bai
3.83 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_SJ.out.tab
89.00 kB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed.bw
37.98 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-matrkd-l-20150527-ja-1.fastq.gz
54.44 MB
stderr.txt
1.34 kB
ptbp1-hek293-matrkd-l-20150527-ja-1_fastqc.zip
414.52 kB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed.fastq.gz
55.55 MB
report.txt
670 B
iCount xlsites
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single.bed.gz
1.40 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_skipped.bam
2.90 kB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_reads_single.bed.gz
1.60 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_singleAndMulti.bed.gz
2.65 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single.bedgraph
6.07 MB
iCount summary
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single_summary_type.tsv
430 B
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single_summary_subtype.tsv
1003 B
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single_summary_gene.tsv
1.14 MB

MATR3_HEK293_siCtrl_H_20150527_Ja

iCount summary
matr3-hek293-sictrl-h-20150527-ja_trimmed_single_summary_type.tsv
445 B
matr3-hek293-sictrl-h-20150527-ja_trimmed_single_summary_subtype.tsv
1.02 kB
matr3-hek293-sictrl-h-20150527-ja_trimmed_single_summary_gene.tsv
2.41 MB
FASTQ file (single-end)
fastqc
Directory
matr3-hek293-sictrl-h-20150527-ja.fastq.gz
1.88 GB
stderr.txt
1.30 kB
matr3-hek293-sictrl-h-20150527-ja_fastqc.zip
390.10 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
matr3-hek293-sictrl-h-20150527-ja_trimmed.fastq.gz
1.91 GB
STAR
matr3-hek293-sictrl-h-20150527-ja_trimmed.bam.bai
3.04 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
610.59 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed.bam
2.33 GB
matr3-hek293-sictrl-h-20150527-ja_trimmed_SJ.out.tab
3.10 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_stats.txt
1.82 kB
iCount xlsites
matr3-hek293-sictrl-h-20150527-ja_trimmed_skipped.bam
12.51 kB
matr3-hek293-sictrl-h-20150527-ja_trimmed_single.bed.gz
31.62 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_singleAndMulti.bed.gz
61.76 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_reads_single.bed.gz
36.28 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_single.bedgraph
147.95 MB
iCount RNA-maps
matr3-hek293-sictrl-h-20150527-ja_trimmed_single.tar.gz
1.81 MB
Paraclu
matr3-hek293-sictrl-h-20150527-ja_trimmed_single_peaks.bed.gz
169.32 kB
K-mers
matr3-hek293-sictrl-h-20150527-ja.tar.gz
505.35 kB

No Sample

Paraclu
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single_peaks.bed.gz
83 B
iCount RNA-maps
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single.tar.gz
927.44 kB
Paraclu
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single_peaks.bed.gz
324 B
STAR
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
1.56 MB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed.bam.bai
2.09 MB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_stats.txt
1.79 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed.bam
8.77 MB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_SJ.out.tab
12.98 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed.bw
22.62 kB
K-mers
ptbp1-hek293-matrkd-l-20150527-ja.tar.gz
333.83 kB
iCount summary
matr3-hek293-sictrl-h-20150527-ja_trimmed_single_summary_type.tsv
445 B
matr3-hek293-sictrl-h-20150527-ja_trimmed_single_summary_subtype.tsv
1.02 kB
matr3-hek293-sictrl-h-20150527-ja_trimmed_single_summary_gene.tsv
2.41 MB
Paraclu
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single_peaks.bed.gz
3.19 kB
iCount RNA-maps
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single.tar.gz
558.43 kB
K-mers
ptbp1-hek293-matrkd-l-20150527-ja-1.tar.gz
318.23 kB
K-mers
ptbp1-hek293-matrkd-h-20150527-ja-1.tar.gz
439.08 kB
iCount summary
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single_summary_subtype.tsv
1.00 kB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single_summary_type.tsv
437 B
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single_summary_gene.tsv
1.69 MB
Paraclu
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single_peaks.bed.gz
84.33 kB
FASTQ file (single-end)
matr3-hek293-ptbkd-h-20150527-ja.fastq.gz
39.95 kB
matr3-hek293-ptbkd-h-20150527-ja_fastqc.zip
495.72 kB
fastqc
Directory
stderr.txt
128 B
iCount RNA-maps
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single.tar.gz
67.28 kB
iCount RNA-maps
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single.tar.gz
184.77 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hek293-sictrl-h-20150527-ja.fastq.gz
1.88 GB
stderr.txt
1.30 kB
matr3-hek293-sictrl-h-20150527-ja_fastqc.zip
390.10 kB
FASTQ file (single-end)
matr3-hek293-sictrl-l-20150527-ja_fastqc.zip
392.72 kB
fastqc
Directory
stderr.txt
1.30 kB
matr3-hek293-sictrl-l-20150527-ja.fastq.gz
322.51 MB
iCount summary
matr3-hek293-sictrl-l-20150527-ja_trimmed_single_summary_type.tsv
437 B
matr3-hek293-sictrl-l-20150527-ja_trimmed_single_summary_subtype.tsv
1017 B
matr3-hek293-sictrl-l-20150527-ja_trimmed_single_summary_gene.tsv
1.61 MB
K-mers
ptbp1-hek293-matrkd-h-20150527-ja.tar.gz
133.85 kB
STAR
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_unmapped.out.mate1.fastq.gz
13.13 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed.bam
68.87 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_stats.txt
1.80 kB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed.bam.bai
3.83 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_SJ.out.tab
89.00 kB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed.bw
37.98 kB
STAR
matr3-hek293-ptbkd-l-20150527-ja_trimmed_stats.txt
1.78 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed.bw
15.84 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed.bam
144.06 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed.bam.bai
1.41 MB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_SJ.out.tab
150 B
matr3-hek293-ptbkd-l-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
24.15 kB
iCount xlsites
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_skipped.bam
2.90 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single.bed.gz
188.48 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single.bedgraph
732.33 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_reads_single.bed.gz
214.16 kB
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_singleAndMulti.bed.gz
340.63 kB
iCount summary
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single_summary_type.tsv
432 B
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single_summary_subtype.tsv
1006 B
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single_summary_gene.tsv
1.22 MB
iCount RNA-maps
matr3-hek293-sictrl-l-20150527-ja_trimmed_single.tar.gz
878.03 kB
FASTQ file (single-end)
fastqc
Directory
matr3-hek293-ptbkd-l-20150527-ja_fastqc.zip
516.07 kB
matr3-hek293-ptbkd-l-20150527-ja.fastq.gz
107.27 kB
stderr.txt
194 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.34 kB
ptbp1-hek293-matrkd-h-20150527-ja-1_fastqc.zip
399.34 kB
ptbp1-hek293-matrkd-h-20150527-ja-1.fastq.gz
439.29 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-matrkd-l-20150527-ja-1.fastq.gz
54.44 MB
stderr.txt
1.34 kB
ptbp1-hek293-matrkd-l-20150527-ja-1_fastqc.zip
414.52 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.30 kB
ptbp1-hek293-matrkd-h-20150527-ja_fastqc.zip
436.04 kB
ptbp1-hek293-matrkd-h-20150527-ja.fastq.gz
7.17 MB
iCount summary
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single_summary_type.tsv
418 B
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single_summary_subtype.tsv
971 B
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single_summary_gene.tsv
557.02 kB
iCount RNA-maps
ptbp1-hek293-matrkd-h-20150527-ja_trimmed_single.tar.gz
402.00 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-matrkd-l-20150527-ja.fastq.gz
71.64 MB
stderr.txt
1.30 kB
ptbp1-hek293-matrkd-l-20150527-ja_fastqc.zip
418.07 kB
Paraclu
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single_peaks.bed.gz
6.02 kB
iCount RNA-maps
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single.tar.gz
614.35 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
matr3-hek293-ptbkd-h-20150527-ja_trimmed.fastq.gz
40.66 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
matr3-hek293-ptbkd-l-20150527-ja_trimmed.fastq.gz
109.57 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
492.37 kB
demux_nomatch.fastq.gz
3.11 GB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
matr3-hek293-sictrl-l-20150527-ja_trimmed.fastq.gz
328.11 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
671 B
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed.fastq.gz
446.46 MB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed.fastq.gz
55.55 MB
report.txt
670 B
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
matr3-hek293-sictrl-h-20150527-ja_trimmed.fastq.gz
1.91 GB
Cutadapt (single-end)
report.txt
668 B
fastqc
Directory
ptbp1-hek293-matrkd-h-20150527-ja_trimmed.fastq.gz
7.27 MB
Cutadapt (single-end)
ptbp1-hek293-matrkd-l-20150527-ja_trimmed.fastq.gz
72.79 MB
fastqc
Directory
report.txt
668 B
STAR
matr3-hek293-ptbkd-h-20150527-ja_trimmed_stats.txt
1.78 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed.bam
59.05 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed.bam.bai
1.32 MB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_SJ.out.tab
185 B
matr3-hek293-ptbkd-h-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
13.11 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed.bw
15.54 kB
iCount xlsites
matr3-hek293-sictrl-l-20150527-ja_trimmed_skipped.bam
4.71 kB
matr3-hek293-sictrl-l-20150527-ja_trimmed_single.bed.gz
5.22 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed_single.bedgraph
23.54 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed_singleAndMulti.bed.gz
9.64 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed_reads_single.bed.gz
6.02 MB
iCount xlsites
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single.bed.gz
1.40 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_skipped.bam
2.90 kB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_reads_single.bed.gz
1.60 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_singleAndMulti.bed.gz
2.65 MB
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single.bedgraph
6.07 MB
Paraclu
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single_peaks.bed.gz
83 B
STAR
matr3-hek293-sictrl-h-20150527-ja_trimmed.bam.bai
3.04 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
610.59 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed.bam
2.33 GB
matr3-hek293-sictrl-h-20150527-ja_trimmed_SJ.out.tab
3.10 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_stats.txt
1.82 kB
iCount summary
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single_summary_type.tsv
391 B
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single_summary_subtype.tsv
494 B
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single_summary_gene.tsv
11.61 kB
iCount xlsites
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single.bed.gz
1.67 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_singleAndMulti.bed.gz
3.14 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_skipped.bam
3.26 kB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_reads_single.bed.gz
1.92 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_single.bedgraph
7.34 MB
iCount summary
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single_summary_type.tsv
399 B
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single_summary_subtype.tsv
499 B
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single_summary_gene.tsv
25.98 kB
Paraclu
matr3-hek293-sictrl-l-20150527-ja_trimmed_single_peaks.bed.gz
4.22 kB
iCount summary
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single_summary_type.tsv
430 B
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single_summary_subtype.tsv
1003 B
ptbp1-hek293-matrkd-l-20150527-ja-1_trimmed_single_summary_gene.tsv
1.14 MB
STAR
matr3-hek293-sictrl-l-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
109.21 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed.bam
379.52 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed.bam.bai
3.91 MB
matr3-hek293-sictrl-l-20150527-ja_trimmed_stats.txt
1.81 kB
matr3-hek293-sictrl-l-20150527-ja_trimmed_SJ.out.tab
603.79 kB
iCount xlsites
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_skipped.bam
4.87 kB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_reads_single.bed.gz
8.91 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_singleAndMulti.bed.gz
13.89 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single.bed.gz
7.72 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_single.bedgraph
35.88 MB
K-mers
matr3-hek293-ptbkd-h-20150527-ja.tar.gz
136 B
K-mers
matr3-hek293-ptbkd-l-20150527-ja.tar.gz
136 B
K-mers
matr3-hek293-sictrl-l-20150527-ja.tar.gz
375.87 kB
iCount xlsites
matr3-hek293-sictrl-h-20150527-ja_trimmed_skipped.bam
12.51 kB
matr3-hek293-sictrl-h-20150527-ja_trimmed_single.bed.gz
31.62 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_singleAndMulti.bed.gz
61.76 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_reads_single.bed.gz
36.28 MB
matr3-hek293-sictrl-h-20150527-ja_trimmed_single.bedgraph
147.95 MB
STAR
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed.bam.bai
3.87 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_unmapped.out.mate1.fastq.gz
112.01 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_SJ.out.tab
641.59 kB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed.bam
523.41 MB
ptbp1-hek293-matrkd-h-20150527-ja-1_trimmed_stats.txt
1.81 kB
iCount RNA-maps
matr3-hek293-sictrl-h-20150527-ja_trimmed_single.tar.gz
1.81 MB
Paraclu
matr3-hek293-sictrl-h-20150527-ja_trimmed_single_peaks.bed.gz
169.32 kB
K-mers
matr3-hek293-sictrl-h-20150527-ja.tar.gz
505.35 kB
STAR
ptbp1-hek293-matrkd-l-20150527-ja_trimmed.bam
88.97 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
17.43 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed.bam.bai
3.92 MB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_stats.txt
1.80 kB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed_SJ.out.tab
110.44 kB
ptbp1-hek293-matrkd-l-20150527-ja_trimmed.bw
40.92 kB
iCount xlsites
matr3-hek293-ptbkd-h-20150527-ja_trimmed_skipped.bam
2.90 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_singleAndMulti.bed.gz
3.03 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single.bed.gz
1.62 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_reads_single.bed.gz
1.79 kB
matr3-hek293-ptbkd-h-20150527-ja_trimmed_single.bedgraph
5.04 kB
iCount xlsites
matr3-hek293-ptbkd-l-20150527-ja_trimmed_reads_single.bed.gz
3.80 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_singleAndMulti.bed.gz
6.08 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single.bedgraph
10.78 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_single.bed.gz
3.39 kB
matr3-hek293-ptbkd-l-20150527-ja_trimmed_skipped.bam
2.90 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
618 B
Upload iCount sample annotation
20150527_JA_Hs_HEK293_annotation_sheet.xlsx
15.12 kB
20150527_JA_Hs_HEK293_annotation_sheet.tab.gz
1.03 kB
FASTQ file (single-end)
fastqc
Directory
20150527_Ja_Hs_HEK293T_cell_line.fastq.gz
8.06 GB
stderr.txt
1.28 kB
20150527_Ja_Hs_HEK293T_cell_line_fastqc.zip
490.97 kB