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Folder iconMouse Brain P0

Rahul Arora
Jan. 17, 2020

No Sample

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.44 kB
igg-p0-brain-rnase200-20140721-lug3640-1_fastqc.zip
471.44 kB
igg-p0-brain-rnase200-20140721-lug3640-1.fastq.gz
753.81 kB
FASTQ file (single-end)
fastqc
Directory
matr3-p0-brain-rnase200-20140721-lug3640.fastq.gz
133.78 MB
matr3-p0-brain-rnase200-20140721-lug3640_fastqc.zip
391.07 kB
stderr.txt
1.44 kB
K-mers
matr3-p0-brain-rnase100-20140721-lug3640-1.tar.gz
381.92 kB
Paraclu
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single_peaks.bed.gz
982 B
Cutadapt (single-end)
fastqc
Directory
report.txt
675 B
matr3-p0-brain-rnase500-20140721-lug3640_trimmed.fastq.gz
79.48 MB
K-mers
matr3-p0-brain-rnase500-20140721-lug3640.tar.gz
262.49 kB
Paraclu
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single_peaks.bed.gz
2.42 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-p0-brain-rnase200-20140721-lug3640_trimmed.fastq.gz
136.87 MB
K-mers
igg-p0-brain-rnase200-20140721-lug3640.tar.gz
138 B
Upload iCount sample annotation
20140721_LUg36_annotation_sheet.xlsx
15.05 kB
20140721_LUg36_annotation_sheet.tab.gz
1.04 kB
iCount xlsites
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_skipped.bam
3.23 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.bed.gz
3.69 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_reads_single.bed.gz
4.22 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.bedgraph
16.48 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_singleAndMulti.bed.gz
5.13 MB
iCount summary
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_type.tsv
432 B
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_subtype.tsv
1011 B
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_gene.tsv
1.12 MB
iCount RNA-maps
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.tar.gz
596.33 kB
Paraclu
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_peaks.bed.gz
3.43 kB
K-mers
matr3-p0-brain-rnase200-20140721-lug3640-1.tar.gz
376.75 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.48 kB
matr3-p0-brain-rnase100-20140721-lug3640-1_fastqc.zip
386.20 kB
matr3-p0-brain-rnase100-20140721-lug3640-1.fastq.gz
210.94 MB
iCount RNA-maps
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single.tar.gz
199.85 kB
iCount RNA-maps
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.tar.gz
322.21 kB
iCount RNA-maps
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single.tar.gz
640.76 kB
Paraclu
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_peaks.bed.gz
91 B
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
721.07 MB
demux_nomatch_fastqc.zip
476.60 kB
stderr.txt
935 B
FASTQ file (single-end)
fastqc
Directory
20140721_LUg3640_mm_brain_P0.fastq.gz
2.11 GB
stderr.txt
1.21 kB
20140721_LUg3640_mm_brain_P0_fastqc.zip
475.96 kB
FASTQ file (single-end)
fastqc
Directory
igg-p0-brain-rnase200-20140721-lug3640.fastq.gz
404.33 kB
stderr.txt
787 B
igg-p0-brain-rnase200-20140721-lug3640_fastqc.zip
448.54 kB
FASTQ file (single-end)
fastqc
Directory
matr3-p0-brain-rnase500-20140721-lug3640-1.fastq.gz
126.38 MB
stderr.txt
1.48 kB
matr3-p0-brain-rnase500-20140721-lug3640-1_fastqc.zip
390.68 kB
FASTQ file (single-end)
fastqc
Directory
matr3-p0-brain-rnase500-20140721-lug3640.fastq.gz
77.66 MB
matr3-p0-brain-rnase500-20140721-lug3640_fastqc.zip
395.88 kB
stderr.txt
1.44 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.48 kB
matr3-p0-brain-rnase200-20140721-lug3640-1_fastqc.zip
384.32 kB
matr3-p0-brain-rnase200-20140721-lug3640-1.fastq.gz
118.51 MB
FASTQ file (single-end)
fastqc
Directory
matr3-p0-brain-rnase100-20140721-lug3640.fastq.gz
105.34 MB
stderr.txt
1.44 kB
matr3-p0-brain-rnase100-20140721-lug3640_fastqc.zip
389.74 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
678 B
Paraclu
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single_peaks.bed.gz
2.43 kB
iCount summary
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single_summary_type.tsv
432 B
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single_summary_subtype.tsv
1006 B
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single_summary_gene.tsv
1.15 MB
K-mers
matr3-p0-brain-rnase500-20140721-lug3640-1.tar.gz
349.68 kB
iCount summary
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single_summary_gene.tsv
1.03 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single_summary_subtype.tsv
1004 B
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single_summary_type.tsv
431 B
iCount RNA-maps
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single.tar.gz
567.61 kB
iCount RNA-maps
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single.tar.gz
666.96 kB
Cutadapt (single-end)
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed.fastq.gz
121.27 MB
fastqc
Directory
report.txt
678 B
iCount summary
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_subtype.tsv
1015 B
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_type.tsv
429 B
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_gene.tsv
1.20 MB
K-mers
matr3-p0-brain-rnase200-20140721-lug3640.tar.gz
343.93 kB
iCount summary
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single_summary_subtype.tsv
954 B
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single_summary_type.tsv
432 B
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single_summary_gene.tsv
1.31 MB
iCount RNA-maps
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single.tar.gz
677.10 kB
Paraclu
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single_peaks.bed.gz
2.50 kB
Paraclu
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single_peaks.bed.gz
11.93 kB
iCount summary
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single_summary_type.tsv
430 B
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single_summary_gene.tsv
1.19 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single_summary_subtype.tsv
1009 B
iCount RNA-maps
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single.tar.gz
635.19 kB
K-mers
matr3-p0-brain-rnase100-20140721-lug3640.tar.gz
334.85 kB
K-mers
igg-p0-brain-rnase200-20140721-lug3640-1.tar.gz
140 B
iCount summary
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_type.tsv
404 B
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_gene.tsv
120.69 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_subtype.tsv
826 B
Cutadapt (single-end)
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed.fastq.gz
648.43 kB
fastqc
Directory
report.txt
676 B
iCount summary
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_subtype.tsv
695 B
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_type.tsv
407 B
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_gene.tsv
61.61 kB
Paraclu
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single_peaks.bed.gz
89 B
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
igg-p0-brain-rnase200-20140721-lug3640_trimmed.fastq.gz
396.04 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed.fastq.gz
129.58 MB
STAR
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_unmapped.out.mate1.fastq.gz
12.35 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed.bam.bai
3.61 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed.bam
147.52 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_SJ.out.tab
125.40 kB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed.bw
17.62 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed.fastq.gz
215.31 MB
Cutadapt (single-end)
matr3-p0-brain-rnase100-20140721-lug3640_trimmed.fastq.gz
107.69 MB
fastqc
Directory
report.txt
676 B
STAR
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_unmapped.out.mate1.fastq.gz
11.23 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed.bam.bai
3.60 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed.bw
16.40 kB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_SJ.out.tab
106.01 kB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed.bam
139.59 MB
STAR
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_unmapped.out.mate1.fastq.gz
5.94 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed.bam.bai
3.32 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_SJ.out.tab
62.19 kB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed.bw
12.16 kB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed.bam
84.41 MB
STAR
matr3-p0-brain-rnase100-20140721-lug3640_trimmed.bam.bai
3.56 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_unmapped.out.mate1.fastq.gz
12.63 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed.bam
123.97 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed.bw
16.93 kB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_SJ.out.tab
155.35 kB
STAR
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed.bam.bai
1.34 MB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed.bam
751.10 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_stats.txt
1.78 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_unmapped.out.mate1.fastq.gz
152.65 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed.bw
4.37 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_SJ.out.tab
1.05 kB
STAR
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed.bam
238.99 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_unmapped.out.mate1.fastq.gz
28.84 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed.bam.bai
3.65 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_stats.txt
1.81 kB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed.bw
23.62 kB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_SJ.out.tab
271.28 kB
STAR
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_SJ.out.tab
110.02 kB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_unmapped.out.mate1.fastq.gz
12.18 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed.bam
132.00 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed.bam.bai
3.58 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed.bw
16.59 kB
STAR
igg-p0-brain-rnase200-20140721-lug3640_trimmed_unmapped.out.mate1.fastq.gz
190.04 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed.bam
473.83 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed.bam.bai
1.30 MB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_stats.txt
1.78 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_SJ.out.tab
331 B
igg-p0-brain-rnase200-20140721-lug3640_trimmed.bw
4.40 kB
iCount xlsites
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_skipped.bam
1.38 kB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single.bedgraph
11.47 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_singleAndMulti.bed.gz
3.43 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_reads_single.bed.gz
2.99 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single.bed.gz
2.59 MB
iCount xlsites
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_singleAndMulti.bed.gz
5.36 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_reads_single.bed.gz
4.54 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single.bedgraph
17.70 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single.bed.gz
3.94 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_skipped.bam
1.73 kB
iCount xlsites
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single.bedgraph
19.64 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_skipped.bam
1.88 kB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_singleAndMulti.bed.gz
5.90 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single.bed.gz
4.35 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_reads_single.bed.gz
5.01 MB
iCount xlsites
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single.bed.gz
6.03 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_singleAndMulti.bed.gz
9.12 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_skipped.bam
5.02 kB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single.bedgraph
27.64 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_reads_single.bed.gz
6.96 MB
iCount xlsites
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single.bed.gz
3.82 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_skipped.bam
1.74 kB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_reads_single.bed.gz
4.35 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single.bedgraph
17.19 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_singleAndMulti.bed.gz
5.48 MB
iCount xlsites
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_skipped.bam
1.38 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.bed.gz
22.20 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_singleAndMulti.bed.gz
33.75 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_reads_single.bed.gz
24.70 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.bedgraph
76.40 kB
iCount xlsites
igg-p0-brain-rnase200-20140721-lug3640_trimmed_skipped.bam
1.38 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_singleAndMulti.bed.gz
17.28 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single.bed.gz
10.89 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single.bedgraph
36.17 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_reads_single.bed.gz
12.02 kB

IgG_P0_brain_RNase200_20140721_LUg3640

K-mers
igg-p0-brain-rnase200-20140721-lug3640.tar.gz
138 B
iCount RNA-maps
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single.tar.gz
199.85 kB
FASTQ file (single-end)
fastqc
Directory
igg-p0-brain-rnase200-20140721-lug3640.fastq.gz
404.33 kB
stderr.txt
787 B
igg-p0-brain-rnase200-20140721-lug3640_fastqc.zip
448.54 kB
iCount summary
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_subtype.tsv
695 B
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_type.tsv
407 B
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_gene.tsv
61.61 kB
Paraclu
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single_peaks.bed.gz
89 B
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
igg-p0-brain-rnase200-20140721-lug3640_trimmed.fastq.gz
396.04 kB
STAR
igg-p0-brain-rnase200-20140721-lug3640_trimmed_unmapped.out.mate1.fastq.gz
190.04 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed.bam
473.83 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed.bam.bai
1.30 MB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_stats.txt
1.78 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_SJ.out.tab
331 B
igg-p0-brain-rnase200-20140721-lug3640_trimmed.bw
4.40 kB
iCount xlsites
igg-p0-brain-rnase200-20140721-lug3640_trimmed_skipped.bam
1.38 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_singleAndMulti.bed.gz
17.28 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single.bed.gz
10.89 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_single.bedgraph
36.17 kB
igg-p0-brain-rnase200-20140721-lug3640_trimmed_reads_single.bed.gz
12.02 kB

IgG_P0_brain_RNase200_20140721_LUg3640_1

FASTQ file (single-end)
igg-p0-brain-rnase200-20140721-lug3640-1.fastq.gz
753.81 kB
fastqc
Directory
stderr.txt
1.44 kB
igg-p0-brain-rnase200-20140721-lug3640-1_fastqc.zip
471.44 kB
iCount RNA-maps
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.tar.gz
322.21 kB
Paraclu
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_peaks.bed.gz
91 B
K-mers
igg-p0-brain-rnase200-20140721-lug3640-1.tar.gz
140 B
iCount summary
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_type.tsv
404 B
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_gene.tsv
120.69 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_subtype.tsv
826 B
Cutadapt (single-end)
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed.fastq.gz
648.43 kB
fastqc
Directory
report.txt
676 B
STAR
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed.bam.bai
1.34 MB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed.bam
751.10 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_stats.txt
1.78 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_unmapped.out.mate1.fastq.gz
152.65 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed.bw
4.37 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_SJ.out.tab
1.05 kB
iCount xlsites
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_skipped.bam
1.38 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.bed.gz
22.20 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_singleAndMulti.bed.gz
33.75 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_reads_single.bed.gz
24.70 kB
igg-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.bedgraph
76.40 kB

MATR3_P0_brain_RNase200_20140721_LUg3640_1

iCount xlsites
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_skipped.bam
3.23 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.bed.gz
3.69 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_reads_single.bed.gz
4.22 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.bedgraph
16.48 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_singleAndMulti.bed.gz
5.13 MB
iCount summary
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_type.tsv
432 B
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_subtype.tsv
1011 B
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_summary_gene.tsv
1.12 MB
iCount RNA-maps
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single.tar.gz
596.33 kB
Paraclu
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_single_peaks.bed.gz
3.43 kB
K-mers
matr3-p0-brain-rnase200-20140721-lug3640-1.tar.gz
376.75 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.48 kB
matr3-p0-brain-rnase200-20140721-lug3640-1_fastqc.zip
384.32 kB
matr3-p0-brain-rnase200-20140721-lug3640-1.fastq.gz
118.51 MB
Cutadapt (single-end)
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed.fastq.gz
121.27 MB
fastqc
Directory
report.txt
678 B
STAR
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_SJ.out.tab
110.02 kB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_unmapped.out.mate1.fastq.gz
12.18 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed.bam
132.00 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed.bam.bai
3.58 MB
matr3-p0-brain-rnase200-20140721-lug3640-1_trimmed.bw
16.59 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
721.07 MB
demux_nomatch_fastqc.zip
476.60 kB
stderr.txt
935 B

20140721_LUg3640_mm_brain_P0.fastq.gz

FASTQ file (single-end)
fastqc
Directory
20140721_LUg3640_mm_brain_P0.fastq.gz
2.11 GB
stderr.txt
1.21 kB
20140721_LUg3640_mm_brain_P0_fastqc.zip
475.96 kB

MATR3_P0_brain_RNase100_20140721_LUg3640

FASTQ file (single-end)
fastqc
Directory
matr3-p0-brain-rnase100-20140721-lug3640.fastq.gz
105.34 MB
stderr.txt
1.44 kB
matr3-p0-brain-rnase100-20140721-lug3640_fastqc.zip
389.74 kB
Paraclu
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single_peaks.bed.gz
2.50 kB
iCount summary
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single_summary_type.tsv
430 B
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single_summary_gene.tsv
1.19 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single_summary_subtype.tsv
1009 B
iCount RNA-maps
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single.tar.gz
635.19 kB
K-mers
matr3-p0-brain-rnase100-20140721-lug3640.tar.gz
334.85 kB
Cutadapt (single-end)
matr3-p0-brain-rnase100-20140721-lug3640_trimmed.fastq.gz
107.69 MB
fastqc
Directory
report.txt
676 B
STAR
matr3-p0-brain-rnase100-20140721-lug3640_trimmed.bam.bai
3.56 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_unmapped.out.mate1.fastq.gz
12.63 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed.bam
123.97 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed.bw
16.93 kB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_SJ.out.tab
155.35 kB
iCount xlsites
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single.bed.gz
3.82 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_skipped.bam
1.74 kB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_reads_single.bed.gz
4.35 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_single.bedgraph
17.19 MB
matr3-p0-brain-rnase100-20140721-lug3640_trimmed_singleAndMulti.bed.gz
5.48 MB

MATR3_P0_brain_RNase100_20140721_LUg3640_1

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.48 kB
matr3-p0-brain-rnase100-20140721-lug3640-1_fastqc.zip
386.20 kB
matr3-p0-brain-rnase100-20140721-lug3640-1.fastq.gz
210.94 MB
iCount summary
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single_summary_subtype.tsv
954 B
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single_summary_type.tsv
432 B
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single_summary_gene.tsv
1.31 MB
iCount RNA-maps
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single.tar.gz
677.10 kB
Paraclu
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single_peaks.bed.gz
11.93 kB
K-mers
matr3-p0-brain-rnase100-20140721-lug3640-1.tar.gz
381.92 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed.fastq.gz
215.31 MB
STAR
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed.bam
238.99 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_unmapped.out.mate1.fastq.gz
28.84 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed.bam.bai
3.65 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_stats.txt
1.81 kB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed.bw
23.62 kB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_SJ.out.tab
271.28 kB
iCount xlsites
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single.bed.gz
6.03 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_singleAndMulti.bed.gz
9.12 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_skipped.bam
5.02 kB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_single.bedgraph
27.64 MB
matr3-p0-brain-rnase100-20140721-lug3640-1_trimmed_reads_single.bed.gz
6.96 MB

MATR3_P0_brain_RNase200_20140721_LUg3640

Paraclu
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single_peaks.bed.gz
2.42 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
matr3-p0-brain-rnase200-20140721-lug3640_trimmed.fastq.gz
136.87 MB
FASTQ file (single-end)
fastqc
Directory
matr3-p0-brain-rnase200-20140721-lug3640.fastq.gz
133.78 MB
matr3-p0-brain-rnase200-20140721-lug3640_fastqc.zip
391.07 kB
stderr.txt
1.44 kB
iCount RNA-maps
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single.tar.gz
666.96 kB
iCount summary
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_subtype.tsv
1015 B
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_type.tsv
429 B
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single_summary_gene.tsv
1.20 MB
K-mers
matr3-p0-brain-rnase200-20140721-lug3640.tar.gz
343.93 kB
STAR
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_unmapped.out.mate1.fastq.gz
12.35 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed.bam.bai
3.61 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed.bam
147.52 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_SJ.out.tab
125.40 kB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed.bw
17.62 kB
iCount xlsites
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single.bedgraph
19.64 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_skipped.bam
1.88 kB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_singleAndMulti.bed.gz
5.90 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_single.bed.gz
4.35 MB
matr3-p0-brain-rnase200-20140721-lug3640_trimmed_reads_single.bed.gz
5.01 MB

MATR3_P0_brain_RNase500_20140721_LUg3640

Paraclu
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single_peaks.bed.gz
982 B
Cutadapt (single-end)
fastqc
Directory
report.txt
675 B
matr3-p0-brain-rnase500-20140721-lug3640_trimmed.fastq.gz
79.48 MB
K-mers
matr3-p0-brain-rnase500-20140721-lug3640.tar.gz
262.49 kB
FASTQ file (single-end)
fastqc
Directory
matr3-p0-brain-rnase500-20140721-lug3640.fastq.gz
77.66 MB
matr3-p0-brain-rnase500-20140721-lug3640_fastqc.zip
395.88 kB
stderr.txt
1.44 kB
iCount summary
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single_summary_gene.tsv
1.03 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single_summary_subtype.tsv
1004 B
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single_summary_type.tsv
431 B
iCount RNA-maps
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single.tar.gz
567.61 kB
STAR
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_unmapped.out.mate1.fastq.gz
5.94 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed.bam.bai
3.32 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_SJ.out.tab
62.19 kB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed.bw
12.16 kB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed.bam
84.41 MB
iCount xlsites
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_skipped.bam
1.38 kB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single.bedgraph
11.47 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_singleAndMulti.bed.gz
3.43 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_reads_single.bed.gz
2.99 MB
matr3-p0-brain-rnase500-20140721-lug3640_trimmed_single.bed.gz
2.59 MB

MATR3_P0_brain_RNase500_20140721_LUg3640_1

iCount RNA-maps
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single.tar.gz
640.76 kB
FASTQ file (single-end)
fastqc
Directory
matr3-p0-brain-rnase500-20140721-lug3640-1.fastq.gz
126.38 MB
stderr.txt
1.48 kB
matr3-p0-brain-rnase500-20140721-lug3640-1_fastqc.zip
390.68 kB
Paraclu
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single_peaks.bed.gz
2.43 kB
iCount summary
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single_summary_type.tsv
432 B
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single_summary_subtype.tsv
1006 B
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single_summary_gene.tsv
1.15 MB
K-mers
matr3-p0-brain-rnase500-20140721-lug3640-1.tar.gz
349.68 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed.fastq.gz
129.58 MB
STAR
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_unmapped.out.mate1.fastq.gz
11.23 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed.bam.bai
3.60 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_stats.txt
1.80 kB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed.bw
16.40 kB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_SJ.out.tab
106.01 kB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed.bam
139.59 MB
iCount xlsites
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_singleAndMulti.bed.gz
5.36 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_reads_single.bed.gz
4.54 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single.bedgraph
17.70 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_single.bed.gz
3.94 MB
matr3-p0-brain-rnase500-20140721-lug3640-1_trimmed_skipped.bam
1.73 kB