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Folder iconELAVL1 and B cell antibody response

Rahul Arora
Jan. 15, 2020
Post-transcriptional regulation of mRNA by the RNA binding protein ELAVL1 (HuR) is required in B cells for the germinal centre reaction and for the production of class-switched antibodies in response to T-independent antigens. Transcriptome-wide examination of RNA isoforms, abundance and translation in ELAVL1/HuR-deficient B cells, together with direct measurements of ELAVL1/HuR-RNA interaction, revealed that ELAVL1/HuR-dependent mRNA splicing affects hundreds of transcripts including the dihydrolipoyl succinyltransferase (Dlst), a subunit of the aketoglutaratedehydrogenase (aKGDH) enzyme. In the absence of HuR, defective mitochondrial metabolism results in high levels of reactive oxygen species and B cell death. The study (PMID: 25706746; The RNA-binding protein HuR is essential for the B cell antibody response) shows how post-transcriptional processes control the balance of energy metabolism required for B cell proliferation and differentiation.

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elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single.bedgraph
1.47 MB
iCount xlsites
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_skipped.bam
1.79 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single.bed.gz
3.01 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_reads_single.bed.gz
3.34 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_singleAndMulti.bed.gz
12.92 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single.bedgraph
13.85 MB
iCount xlsites
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single.bedgraph
33.05 MB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single.bed.gz
7.00 MB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_skipped.bam
1.99 kB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_reads_single.bed.gz
7.42 MB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_singleAndMulti.bed.gz
20.87 MB
iCount xlsites
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_skipped.bam
1.38 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_singleAndMulti.bed.gz
4.07 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single.bed.gz
728.05 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_reads_single.bed.gz
850.40 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single.bedgraph
2.94 MB
iCount xlsites
elavl1-bcells-spleen-total-20110531-s7_trimmed_skipped.bam
1.88 kB
elavl1-bcells-spleen-total-20110531-s7_trimmed_reads_single.bed.gz
1.05 MB
elavl1-bcells-spleen-total-20110531-s7_trimmed_singleAndMulti.bed.gz
5.10 MB
elavl1-bcells-spleen-total-20110531-s7_trimmed_single.bed.gz
912.16 kB
elavl1-bcells-spleen-total-20110531-s7_trimmed_single.bedgraph
3.74 MB
iCount summary
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single_summary_gene.tsv
890.70 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single_summary_subtype.tsv
1001 B
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single_summary_type.tsv
434 B
K-mers
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1.tar.gz
355.30 kB
iCount summary
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single_summary_type.tsv
439 B
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single_summary_gene.tsv
1.51 MB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single_summary_subtype.tsv
1.00 kB
Paraclu
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single_peaks.bed.gz
432.84 kB
iCount summary
elavl1-bcells-spleen-total-20110531-s5_trimmed_single_summary_type.tsv
426 B
elavl1-bcells-spleen-total-20110531-s5_trimmed_single_summary_gene.tsv
399.21 kB
elavl1-bcells-spleen-total-20110531-s5_trimmed_single_summary_subtype.tsv
926 B
iCount RNA-maps
elavl1-bcells-spleen-total-20110531-s5_trimmed_single.tar.gz
372.56 kB
K-mers
elavl1-bcells-spleen-total-20110531-s5-1.tar.gz
507.42 kB
K-mers
elavl1-bcells-spleen-total-20110531-s5.tar.gz
217.11 kB
iCount summary
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single_summary_type.tsv
434 B
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single_summary_subtype.tsv
1012 B
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single_summary_gene.tsv
1.21 MB
K-mers
elavl1-bcells-spleen-cytoplasmic-20110531-s5.tar.gz
357.42 kB
iCount summary
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single_summary_subtype.tsv
922 B
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single_summary_type.tsv
424 B
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single_summary_gene.tsv
658.97 kB
iCount summary
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single_summary_subtype.tsv
1014 B
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single_summary_type.tsv
434 B
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single_summary_gene.tsv
1.25 MB
iCount RNA-maps
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single.tar.gz
634.86 kB
Paraclu
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_single_peaks.bed.gz
5.98 kB
K-mers
elavl1-bcells-spleen-lps48h-20100420-s3.tar.gz
326.25 kB
iCount RNA-maps
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_single.tar.gz
505.82 kB
iCount RNA-maps
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single.tar.gz
1015.58 kB
iCount RNA-maps
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single.tar.gz
530.53 kB
Paraclu
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single_peaks.bed.gz
178.11 kB
K-mers
elavl1-bcells-spleen-lps48h-20100420-s3-1.tar.gz
452.45 kB
iCount summary
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single_summary_subtype.tsv
1014 B
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single_summary_type.tsv
436 B
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single_summary_gene.tsv
1.46 MB
iCount summary
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single_summary_type.tsv
427 B
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single_summary_subtype.tsv
994 B
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single_summary_gene.tsv
745.48 kB
Paraclu
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single_peaks.bed.gz
1.18 kB
K-mers
elavl1-bcells-spleen-total-20110531-s7-1.tar.gz
304.98 kB
iCount summary
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single_summary_subtype.tsv
1008 B
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single_summary_type.tsv
434 B
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single_summary_gene.tsv
1.26 MB
Paraclu
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single_peaks.bed.gz
7.89 kB
K-mers
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1.tar.gz
430.48 kB
K-mers
elavl1-bcells-spleen-cytoplasmic-20110531-s7.tar.gz
319.61 kB
iCount summary
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single_summary_subtype.tsv
1002 B
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single_summary_type.tsv
435 B
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single_summary_gene.tsv
991.80 kB
iCount RNA-maps
elavl1-bcells-spleen-total-20110531-s7_trimmed_single.tar.gz
494.28 kB
K-mers
elavl1-bcells-spleen-lps48h-20100420-s3-2.tar.gz
239.33 kB
K-mers
elavl1-bcells-spleen-lps48h-20100420-s3-3.tar.gz
382.88 kB
K-mers
elavl1-bcells-spleen-total-20110531-s7.tar.gz
345.18 kB
FASTQ file (single-end)
fastqc
Directory
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1.fastq.gz
143.27 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_fastqc.zip
392.69 kB
stderr.txt
1.56 kB

ELAVL1_Bcells_spleen_LPS48h_20100420_s3_3

FASTQ file (single-end)
fastqc
Directory
elavl1-bcells-spleen-lps48h-20100420-s3-3.fastq.gz
138.48 MB
stderr.txt
1.46 kB
elavl1-bcells-spleen-lps48h-20100420-s3-3_fastqc.zip
394.38 kB
Paraclu
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single_peaks.bed.gz
38.42 kB
Cutadapt (single-end)
report.txt
678 B
fastqc
Directory
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed.fastq.gz
115.61 MB
STAR
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed.bam
232.99 MB
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_unmapped.out.mate1.fastq.gz
43.81 MB
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_SJ.out.tab
191.53 kB
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed.bw
20.17 kB
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_stats.txt
1.81 kB
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed.bam.bai
4.06 MB
iCount xlsites
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_skipped.bam
2.11 kB
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single.bed.gz
1.76 MB
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_singleAndMulti.bed.gz
9.08 MB
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_reads_single.bed.gz
1.94 MB
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single.bedgraph
7.62 MB
iCount summary
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single_summary_subtype.tsv
1014 B
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single_summary_type.tsv
434 B
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single_summary_gene.tsv
1.25 MB
iCount RNA-maps
elavl1-bcells-spleen-lps48h-20100420-s3-3_trimmed_single.tar.gz
634.86 kB
K-mers
elavl1-bcells-spleen-lps48h-20100420-s3-3.tar.gz
382.88 kB

ELAVL1_Bcells_spleen_total_20110531_s5

FASTQ file (single-end)
elavl1-bcells-spleen-total-20110531-s5.fastq.gz
96.93 MB
fastqc
Directory
elavl1-bcells-spleen-total-20110531-s5_fastqc.zip
386.98 kB
stderr.txt
1.40 kB
Paraclu
elavl1-bcells-spleen-total-20110531-s5_trimmed_single_peaks.bed.gz
487 B
Cutadapt (single-end)
report.txt
675 B
fastqc
Directory
elavl1-bcells-spleen-total-20110531-s5_trimmed.fastq.gz
78.01 MB
STAR
elavl1-bcells-spleen-total-20110531-s5_trimmed_unmapped.out.mate1.fastq.gz
16.23 MB
elavl1-bcells-spleen-total-20110531-s5_trimmed.bam
115.05 MB
elavl1-bcells-spleen-total-20110531-s5_trimmed_SJ.out.tab
25.56 kB
elavl1-bcells-spleen-total-20110531-s5_trimmed_stats.txt
1.80 kB
elavl1-bcells-spleen-total-20110531-s5_trimmed.bam.bai
2.96 MB
elavl1-bcells-spleen-total-20110531-s5_trimmed.bw
6.69 kB
iCount xlsites
elavl1-bcells-spleen-total-20110531-s5_trimmed_single.bed.gz
138.27 kB
elavl1-bcells-spleen-total-20110531-s5_trimmed_reads_single.bed.gz
150.62 kB
elavl1-bcells-spleen-total-20110531-s5_trimmed_single.bedgraph
496.57 kB
elavl1-bcells-spleen-total-20110531-s5_trimmed_skipped.bam
1.59 kB
elavl1-bcells-spleen-total-20110531-s5_trimmed_singleAndMulti.bed.gz
943.01 kB
iCount summary
elavl1-bcells-spleen-total-20110531-s5_trimmed_single_summary_type.tsv
426 B
elavl1-bcells-spleen-total-20110531-s5_trimmed_single_summary_gene.tsv
399.21 kB
elavl1-bcells-spleen-total-20110531-s5_trimmed_single_summary_subtype.tsv
926 B
iCount RNA-maps
elavl1-bcells-spleen-total-20110531-s5_trimmed_single.tar.gz
372.56 kB
K-mers
elavl1-bcells-spleen-total-20110531-s5.tar.gz
217.11 kB

ELAVL1_Bcells_spleen_cytoplasmic_20110531_s5_1

iCount RNA-maps
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single.tar.gz
510.63 kB
STAR
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_unmapped.out.mate1.fastq.gz
20.21 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed.bam
215.37 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed.bam.bai
4.23 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_SJ.out.tab
82.70 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_stats.txt
1.80 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed.bw
11.58 kB
Paraclu
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single_peaks.bed.gz
8.85 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
682 B
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed.fastq.gz
129.27 MB
iCount xlsites
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_singleAndMulti.bed.gz
3.74 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_reads_single.bed.gz
732.14 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single.bedgraph
2.52 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single.bed.gz
626.42 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_skipped.bam
1.55 kB
iCount summary
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single_summary_gene.tsv
890.70 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single_summary_subtype.tsv
1001 B
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_trimmed_single_summary_type.tsv
434 B
K-mers
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1.tar.gz
355.30 kB
FASTQ file (single-end)
fastqc
Directory
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1.fastq.gz
143.27 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5-1_fastqc.zip
392.69 kB
stderr.txt
1.56 kB

ELAVL1_Bcells_spleen_LPS48h_20100420_s3_2

Paraclu
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single_peaks.bed.gz
3.58 kB
FASTQ file (single-end)
fastqc
Directory
elavl1-bcells-spleen-lps48h-20100420-s3-2_fastqc.zip
427.50 kB
elavl1-bcells-spleen-lps48h-20100420-s3-2.fastq.gz
27.81 MB
stderr.txt
1.46 kB
iCount RNA-maps
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single.tar.gz
409.89 kB
Cutadapt (single-end)
report.txt
678 B
fastqc
Directory
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed.fastq.gz
23.41 MB
STAR
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_unmapped.out.mate1.fastq.gz
9.95 MB
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed.bam.bai
3.42 MB
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_stats.txt
1.80 kB
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed.bam
43.82 MB
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_SJ.out.tab
49.50 kB
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed.bw
8.39 kB
iCount xlsites
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_singleAndMulti.bed.gz
1.76 MB
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_skipped.bam
1.66 kB
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single.bed.gz
419.36 kB
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_reads_single.bed.gz
456.85 kB
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single.bedgraph
1.62 MB
iCount summary
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single_summary_subtype.tsv
922 B
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single_summary_type.tsv
424 B
elavl1-bcells-spleen-lps48h-20100420-s3-2_trimmed_single_summary_gene.tsv
658.97 kB
K-mers
elavl1-bcells-spleen-lps48h-20100420-s3-2.tar.gz
239.33 kB

ELAVL1_Bcells_spleen_cytoplasmic_20110531_s7

FASTQ file (single-end)
fastqc
Directory
elavl1-bcells-spleen-cytoplasmic-20110531-s7.fastq.gz
139.73 MB
stderr.txt
1.52 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_fastqc.zip
435.05 kB
Cutadapt (single-end)
report.txt
681 B
fastqc
Directory
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed.fastq.gz
123.74 MB
STAR
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed.bam
248.49 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_SJ.out.tab
108.17 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_unmapped.out.mate1.fastq.gz
22.37 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed.bam.bai
4.29 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_stats.txt
1.80 kB
iCount xlsites
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_skipped.bam
1.38 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_singleAndMulti.bed.gz
4.07 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single.bed.gz
728.05 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_reads_single.bed.gz
850.40 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single.bedgraph
2.94 MB
iCount RNA-maps
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single.tar.gz
530.53 kB
Paraclu
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single_peaks.bed.gz
7.89 kB
K-mers
elavl1-bcells-spleen-cytoplasmic-20110531-s7.tar.gz
319.61 kB
iCount summary
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single_summary_subtype.tsv
1002 B
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single_summary_type.tsv
435 B
elavl1-bcells-spleen-cytoplasmic-20110531-s7_trimmed_single_summary_gene.tsv
991.80 kB

20100420_s3_merged.fastq.gz

FASTQ file (single-end)
stderr.txt
1.01 kB
fastqc
Directory
20100420_s3_merged.fastq.gz
1.03 GB
20100420_s3_merged_fastqc.zip
492.68 kB

20110531_s5_combined.fastq.gz

FASTQ file (single-end)
20110531_s5_combined_fastqc.zip
529.36 kB
fastqc
Directory
stderr.txt
1.05 kB
20110531_s5_combined.fastq.gz
774.48 MB

20110531_s7_combined.fastq.gz

FASTQ file (single-end)
20110531_s7_combined_fastqc.zip
552.27 kB
fastqc
Directory
20110531_s7_combined.fastq.gz
712.56 MB
stderr.txt
1.05 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
462.35 MB
demux_nomatch_fastqc.zip
492.87 kB

ELAVL1_Bcells_spleen_cytoplasmic_20110531_s5

FASTQ file (single-end)
fastqc
Directory
elavl1-bcells-spleen-cytoplasmic-20110531-s5_fastqc.zip
399.24 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5.fastq.gz
134.56 MB
stderr.txt
1.52 kB
Paraclu
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single_peaks.bed.gz
19.38 kB
iCount RNA-maps
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single.tar.gz
676.81 kB
Cutadapt (single-end)
report.txt
681 B
fastqc
Directory
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed.fastq.gz
113.73 MB
STAR
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_unmapped.out.mate1.fastq.gz
24.40 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_stats.txt
1.80 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed.bam.bai
4.42 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed.bam
232.13 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_SJ.out.tab
184.52 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed.bw
24.95 kB
iCount xlsites
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_skipped.bam
1.85 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single.bed.gz
1.57 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_reads_single.bed.gz
1.79 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_singleAndMulti.bed.gz
6.81 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single.bedgraph
6.81 MB
iCount summary
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single_summary_type.tsv
434 B
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single_summary_subtype.tsv
1012 B
elavl1-bcells-spleen-cytoplasmic-20110531-s5_trimmed_single_summary_gene.tsv
1.21 MB
K-mers
elavl1-bcells-spleen-cytoplasmic-20110531-s5.tar.gz
357.42 kB

ELAVL1_Bcells_spleen_total_20110531_s5_1

FASTQ file (single-end)
fastqc
Directory
elavl1-bcells-spleen-total-20110531-s5-1.fastq.gz
248.32 MB
elavl1-bcells-spleen-total-20110531-s5-1_fastqc.zip
379.94 kB
stderr.txt
1.44 kB
iCount RNA-maps
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single.tar.gz
1.34 MB
Cutadapt (single-end)
fastqc
Directory
elavl1-bcells-spleen-total-20110531-s5-1_trimmed.fastq.gz
222.15 MB
report.txt
677 B
STAR
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_unmapped.out.mate1.fastq.gz
33.08 MB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed.bam.bai
3.95 MB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed.bam
414.99 MB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_stats.txt
1.80 kB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_SJ.out.tab
345.82 kB
iCount xlsites
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_singleAndMulti.bed.gz
29.89 MB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single.bed.gz
12.83 MB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_skipped.bam
2.83 kB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_reads_single.bed.gz
13.40 MB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single.bedgraph
62.11 MB
iCount summary
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single_summary_type.tsv
439 B
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single_summary_gene.tsv
1.51 MB
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single_summary_subtype.tsv
1.00 kB
Paraclu
elavl1-bcells-spleen-total-20110531-s5-1_trimmed_single_peaks.bed.gz
432.84 kB
K-mers
elavl1-bcells-spleen-total-20110531-s5-1.tar.gz
507.42 kB

ELAVL1_Bcells_spleen_LPS48h_20100420_s3

iCount summary
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_single_summary_subtype.tsv
933 B
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_single_summary_gene.tsv
815.45 kB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_single_summary_type.tsv
429 B
FASTQ file (single-end)
elavl1-bcells-spleen-lps48h-20100420-s3.fastq.gz
22.05 MB
fastqc
Directory
elavl1-bcells-spleen-lps48h-20100420-s3_fastqc.zip
422.99 kB
stderr.txt
1.42 kB
Cutadapt (single-end)
fastqc
Directory
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed.fastq.gz
17.79 MB
report.txt
676 B
STAR
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_unmapped.out.mate1.fastq.gz
6.11 MB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed.bam.bai
3.61 MB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_stats.txt
1.79 kB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_SJ.out.tab
43.09 kB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed.bam
34.46 MB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed.bw
11.87 kB
iCount xlsites
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_single.bed.gz
735.07 kB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_skipped.bam
1.55 kB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_singleAndMulti.bed.gz
2.26 MB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_reads_single.bed.gz
807.79 kB
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_single.bedgraph
3.12 MB
Paraclu
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_single_peaks.bed.gz
5.98 kB
K-mers
elavl1-bcells-spleen-lps48h-20100420-s3.tar.gz
326.25 kB
iCount RNA-maps
elavl1-bcells-spleen-lps48h-20100420-s3_trimmed_single.tar.gz
505.82 kB

ELAVL1_Bcells_spleen_LPS48h_20100420_s3_1

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.46 kB
elavl1-bcells-spleen-lps48h-20100420-s3-1_fastqc.zip
365.43 kB
elavl1-bcells-spleen-lps48h-20100420-s3-1.fastq.gz
159.97 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
679 B
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed.fastq.gz
132.48 MB
STAR
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed.bam.bai
3.78 MB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_unmapped.out.mate1.fastq.gz
41.56 MB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed.bam
267.96 MB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_stats.txt
1.80 kB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_SJ.out.tab
313.95 kB
iCount xlsites
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single.bedgraph
33.05 MB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single.bed.gz
7.00 MB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_skipped.bam
1.99 kB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_reads_single.bed.gz
7.42 MB
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_singleAndMulti.bed.gz
20.87 MB
iCount RNA-maps
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single.tar.gz
1015.58 kB
Paraclu
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single_peaks.bed.gz
178.11 kB
K-mers
elavl1-bcells-spleen-lps48h-20100420-s3-1.tar.gz
452.45 kB
iCount summary
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single_summary_subtype.tsv
1014 B
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single_summary_type.tsv
436 B
elavl1-bcells-spleen-lps48h-20100420-s3-1_trimmed_single_summary_gene.tsv
1.46 MB

ELAVL1_Bcells_spleen_total_20110531_s7

Paraclu
elavl1-bcells-spleen-total-20110531-s7_trimmed_single_peaks.bed.gz
4.94 kB
iCount summary
elavl1-bcells-spleen-total-20110531-s7_trimmed_single_summary_subtype.tsv
1006 B
elavl1-bcells-spleen-total-20110531-s7_trimmed_single_summary_gene.tsv
959.46 kB
elavl1-bcells-spleen-total-20110531-s7_trimmed_single_summary_type.tsv
433 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.40 kB
elavl1-bcells-spleen-total-20110531-s7.fastq.gz
113.17 MB
elavl1-bcells-spleen-total-20110531-s7_fastqc.zip
409.74 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
675 B
elavl1-bcells-spleen-total-20110531-s7_trimmed.fastq.gz
99.27 MB
STAR
elavl1-bcells-spleen-total-20110531-s7_trimmed_stats.txt
1.80 kB
elavl1-bcells-spleen-total-20110531-s7_trimmed_unmapped.out.mate1.fastq.gz
21.29 MB
elavl1-bcells-spleen-total-20110531-s7_trimmed.bam
180.16 MB
elavl1-bcells-spleen-total-20110531-s7_trimmed.bw
15.01 kB
elavl1-bcells-spleen-total-20110531-s7_trimmed_SJ.out.tab
85.93 kB
elavl1-bcells-spleen-total-20110531-s7_trimmed.bam.bai
4.44 MB
iCount xlsites
elavl1-bcells-spleen-total-20110531-s7_trimmed_skipped.bam
1.88 kB
elavl1-bcells-spleen-total-20110531-s7_trimmed_reads_single.bed.gz
1.05 MB
elavl1-bcells-spleen-total-20110531-s7_trimmed_singleAndMulti.bed.gz
5.10 MB
elavl1-bcells-spleen-total-20110531-s7_trimmed_single.bed.gz
912.16 kB
elavl1-bcells-spleen-total-20110531-s7_trimmed_single.bedgraph
3.74 MB
iCount RNA-maps
elavl1-bcells-spleen-total-20110531-s7_trimmed_single.tar.gz
494.28 kB
K-mers
elavl1-bcells-spleen-total-20110531-s7.tar.gz
345.18 kB

ELAVL1_Bcells_spleen_total_20110531_s7_1

FASTQ file (single-end)
fastqc
Directory
elavl1-bcells-spleen-total-20110531-s7-1.fastq.gz
138.07 MB
stderr.txt
1.44 kB
elavl1-bcells-spleen-total-20110531-s7-1_fastqc.zip
413.82 kB
iCount RNA-maps
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single.tar.gz
460.55 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
elavl1-bcells-spleen-total-20110531-s7-1_trimmed.fastq.gz
127.10 MB
STAR
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_unmapped.out.mate1.fastq.gz
26.90 MB
elavl1-bcells-spleen-total-20110531-s7-1_trimmed.bam
199.76 MB
elavl1-bcells-spleen-total-20110531-s7-1_trimmed.bam.bai
4.08 MB
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_SJ.out.tab
67.21 kB
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_stats.txt
1.80 kB
elavl1-bcells-spleen-total-20110531-s7-1_trimmed.bw
10.96 kB
iCount xlsites
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_singleAndMulti.bed.gz
2.61 MB
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_skipped.bam
1.55 kB
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_reads_single.bed.gz
456.47 kB
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single.bed.gz
393.02 kB
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single.bedgraph
1.47 MB
iCount summary
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single_summary_type.tsv
427 B
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single_summary_subtype.tsv
994 B
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single_summary_gene.tsv
745.48 kB
Paraclu
elavl1-bcells-spleen-total-20110531-s7-1_trimmed_single_peaks.bed.gz
1.18 kB
K-mers
elavl1-bcells-spleen-total-20110531-s7-1.tar.gz
304.98 kB

ELAVL1_Bcells_spleen_cytoplasmic_20110531_s7_1

iCount RNA-maps
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single.tar.gz
768.12 kB
Paraclu
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single_peaks.bed.gz
69.66 kB
FASTQ file (single-end)
stderr.txt
1.56 kB
fastqc
Directory
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1.fastq.gz
123.08 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_fastqc.zip
402.99 kB
Cutadapt (single-end)
fastqc
Directory
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed.fastq.gz
116.52 MB
report.txt
682 B
STAR
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_SJ.out.tab
188.28 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_unmapped.out.mate1.fastq.gz
23.80 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed.bam
252.49 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed.bam.bai
4.36 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_stats.txt
1.80 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed.bw
26.08 kB
iCount xlsites
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_skipped.bam
1.79 kB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single.bed.gz
3.01 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_reads_single.bed.gz
3.34 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_singleAndMulti.bed.gz
12.92 MB
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single.bedgraph
13.85 MB
iCount summary
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single_summary_subtype.tsv
1008 B
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single_summary_type.tsv
434 B
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1_trimmed_single_summary_gene.tsv
1.26 MB
K-mers
elavl1-bcells-spleen-cytoplasmic-20110531-s7-1.tar.gz
430.48 kB