quantseq rat brain STAU2KD vs WT

No Sample

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.76 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A64_S61_L001_R1_001.fastq.gz

412.01 MB

LEE595A64_S61_L001_R1_001_fastqc.zip

480.06 kB

stderr.txt

1.09 kB

BBDuk (single-end)

fastqc

Directory

LEE595A83_S82_L001_R1_001_statistics.txt.gz

472 B

LEE595A83_S82_L001_R1_001_preprocessed.fastq.gz

315.89 MB

FASTQ file (single-end)

MOD970A3_S47_L004_R1_001.fastq.gz

536.32 MB

fastqc

Directory

MOD970A3_S47_L004_R1_001_fastqc.zip

485.39 kB

stderr.txt

1.13 kB

FASTQ file (single-end)

MOD970A2_S36_L004_R1_001.fastq.gz

511.20 MB

MOD970A2_S36_L004_R1_001_fastqc.zip

490.14 kB

fastqc

Directory

stderr.txt

1.13 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.13 kB

MOD970A1_S25_L004_R1_001.fastq.gz

505.36 MB

MOD970A1_S25_L004_R1_001_fastqc.zip

485.31 kB

FASTQ file (single-end)

MOD970A4_S48_L004_R1_001.fastq.gz

488.34 MB

MOD970A4_S48_L004_R1_001_fastqc.zip

481.22 kB

fastqc

Directory

stderr.txt

1.13 kB

FASTQ file (single-end)

MOD970A5_S49_L004_R1_001.fastq.gz

479.37 MB

MOD970A5_S49_L004_R1_001_fastqc.zip

490.98 kB

fastqc

Directory

stderr.txt

1.13 kB

GTF file

names

Directory

Rn_Ens100_Q_v3.10k_0.01score.extended.gtf

389.58 MB

trackList.json

481 B

Rn_Ens100_Q_v3.10k_0.01score.extended_sorted.gtf

389.58 MB

Rn_Ens100_Q_v3.10k_0.01score.extended_sorted.gtf.idx

1.33 MB

tracks

Directory

seq

Directory

BBDuk (single-end)

fastqc

Directory

MOD970A4_S48_L004_R1_001_preprocessed.fastq.gz

364.47 MB

MOD970A4_S48_L004_R1_001_statistics.txt.gz

458 B

GTF file

names

Directory

Rn_Ens100_Q_v3.10k_0.01score.extended_rename.gtf

386.46 MB

Rn_Ens100_Q_v3.10k_0.01score.extended_rename_sorted.gtf

386.46 MB

trackList.json

481 B

Rn_Ens100_Q_v3.10k_0.01score.extended_rename_sorted.gtf.idx

1.33 MB

tracks

Directory

seq

Directory

BBDuk (single-end)

fastqc

Directory

MOD970A3_S47_L004_R1_001_preprocessed.fastq.gz

390.61 MB

MOD970A3_S47_L004_R1_001_statistics.txt.gz

462 B

BBDuk (single-end)

fastqc

Directory

MOD970A2_S36_L004_R1_001_preprocessed.fastq.gz

376.60 MB

MOD970A2_S36_L004_R1_001_statistics.txt.gz

456 B

BBDuk (single-end)

MOD970A1_S25_L004_R1_001_preprocessed.fastq.gz

370.20 MB

fastqc

Directory

MOD970A1_S25_L004_R1_001_statistics.txt.gz

459 B

HTSeq-count (CPM)

LEE595A66_S63_L001_R1_001_preprocessed_rc.tab.gz

112.79 kB

LEE595A66_S63_L001_R1_001_preprocessed_expressions.txt.gz

285.38 kB

LEE595A66_S63_L001_R1_001_preprocessed_cpm.tab.gz

140.48 kB

LEE595A66_S63_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.33 kB

BBDuk (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_preprocessed.fastq.gz

351.00 MB

MOD970A5_S49_L004_R1_001_statistics.txt.gz

469 B

HTSeq-count (CPM)

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.06 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

143.17 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

291.53 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.49 kB

HTSeq-count (CPM)

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.03 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.37 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.09 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

297.77 kB

HTSeq-count (CPM)

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.09 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

149.03 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

300.34 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.71 kB

HTSeq-count (CPM)

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

293.17 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.35 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.71 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

144.64 kB

HTSeq-count (CPM)

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.69 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.11 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

288.92 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.53 kB

HTSeq-count (CPM)

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_rc.tab.gz

117.26 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

314.09 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

117.81 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

158.07 kB

HTSeq-count (CPM)

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

294.03 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.00 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.60 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

144.57 kB

HTSeq-count (CPM)

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.31 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.39 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

297.64 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.77 kB

HTSeq-count (CPM)

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.63 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.42 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

145.48 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.03 kB

HTSeq-count (CPM)

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.12 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.71 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.09 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

145.58 kB

HTSeq-count (CPM)

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

301.45 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.02 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.62 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

149.41 kB

HTSeq-count (CPM)

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.05 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.42 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.10 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

297.36 kB

STAR

LEE595A82_S81_L001_R1_001_preprocessed.bam

437.93 MB

LEE595A82_S81_L001_R1_001_preprocessed_SJ.out.tab

1.08 MB

LEE595A82_S81_L001_R1_001_preprocessed.bam.bai

3.71 MB

LEE595A82_S81_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.80 MB

LEE595A82_S81_L001_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

292.96 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.49 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

143.94 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.90 kB

HTSeq-count (CPM)

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.83 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

298.46 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.51 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.90 kB

HTSeq-count (CPM)

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.03 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.95 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

289.22 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.46 kB

HTSeq-count (CPM)

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

299.77 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.00 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

148.93 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.60 kB

HTSeq-count (CPM)

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.96 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.37 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

297.73 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.64 kB

HTSeq-count (CPM)

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_rc.tab.gz

104.03 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

117.07 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

104.88 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

252.81 kB

HTSeq-count (CPM)

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.52 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.93 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

149.33 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

300.43 kB

edgeR

de_file.tab.gz

339.87 kB

diffexp_edgeR.tab.gz

536.94 kB

HTSeq-count (CPM)

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

146.20 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.71 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.49 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.31 kB

edgeR

diffexp_edgeR.tab.gz

471.74 kB

de_file.tab.gz

271.51 kB

HTSeq-count (CPM)

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

290.00 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

142.58 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_rc.tab.gz

112.97 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.53 kB

HTSeq-count (CPM)

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

301.66 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.25 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

150.39 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.87 kB

HTSeq-count (CPM)

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.28 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.71 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

144.15 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

293.26 kB

HTSeq-count (CPM)

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.41 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

296.82 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.06 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.26 kB

HTSeq-count (CPM)

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.16 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.76 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

146.15 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

296.03 kB

HTSeq-count (CPM)

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_rc.tab.gz

116.14 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

307.01 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

154.15 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

116.72 kB

HTSeq-count (CPM)

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.52 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

303.68 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

116.12 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

151.69 kB

HTSeq-count (CPM)

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.29 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.97 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.37 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

145.79 kB

HTSeq-count (CPM)

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

151.00 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.91 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

302.81 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.32 kB

HTSeq-count (CPM)

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

150.10 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.48 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

116.04 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

301.24 kB

HTSeq-count (CPM)

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

144.59 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.74 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

293.67 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.14 kB

HTSeq-count (CPM)

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.85 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.84 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

289.18 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.28 kB

HTSeq-count (CPM)

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.06 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

288.04 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.67 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.08 kB

HTSeq-count (CPM)

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.85 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.96 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.39 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

146.15 kB

HTSeq-count (CPM)

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

291.95 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.88 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.51 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

143.13 kB

HTSeq-count (CPM)

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.88 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.76 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.18 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

289.22 kB

HTSeq-count (CPM)

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

147.60 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_rc.tab.gz

114.31 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.89 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

297.91 kB

HTSeq-count (CPM)

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

147.31 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_rc.tab.gz

114.44 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

297.59 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.03 kB

HTSeq-count (CPM)

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

299.60 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_rc.tab.gz

114.51 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.11 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

148.66 kB

HTSeq-count (CPM)

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

296.77 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

146.06 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.82 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_rc.tab.gz

114.23 kB

FASTQ file (single-end)

stderr.txt

1.09 kB

fastqc

Directory

LEE595A82_S81_L001_R1_001.fastq.gz

409.67 MB

LEE595A82_S81_L001_R1_001_fastqc.zip

481.46 kB

HTSeq-count (CPM)

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

295.65 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.47 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_rc.tab.gz

113.87 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

146.11 kB

BBDuk (single-end)

fastqc

Directory

LEE595A63_S60_L001_R1_001_statistics.txt.gz

447 B

LEE595A63_S60_L001_R1_001_preprocessed.fastq.gz

238.28 MB

BBDuk (single-end)

LEE595A66_S63_L001_R1_001_preprocessed.fastq.gz

264.19 MB

LEE595A66_S63_L001_R1_001_statistics.txt.gz

464 B

fastqc

Directory

FASTQ file (single-end)

LEE595A84_S83_L001_R1_001.fastq.gz

355.50 MB

fastqc

Directory

LEE595A84_S83_L001_R1_001_fastqc.zip

475.74 kB

stderr.txt

1.09 kB

BBDuk (single-end)

fastqc

Directory

LEE595A65_S62_L001_R1_001_statistics.txt.gz

453 B

LEE595A65_S62_L001_R1_001_preprocessed.fastq.gz

349.04 MB

BBDuk (single-end)

LEE595A68_S65_L001_R1_001_preprocessed.fastq.gz

36.17 MB

fastqc

Directory

LEE595A68_S65_L001_R1_001_statistics.txt.gz

384 B

BBDuk (single-end)

fastqc

Directory

LEE595A64_S61_L001_R1_001_statistics.txt.gz

461 B

LEE595A64_S61_L001_R1_001_preprocessed.fastq.gz

326.17 MB

BBDuk (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001_preprocessed.fastq.gz

258.86 MB

LEE595A81_S80_L001_R1_001_statistics.txt.gz

468 B

BBDuk (single-end)

fastqc

Directory

LEE595A82_S81_L001_R1_001_preprocessed.fastq.gz

297.88 MB

LEE595A82_S81_L001_R1_001_statistics.txt.gz

461 B

BBDuk (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001_preprocessed.fastq.gz

265.08 MB

LEE595A56_S52_L001_R1_001_statistics.txt.gz

457 B

BBDuk (single-end)

fastqc

Directory

LEE595A67_S64_L001_R1_001_statistics.txt.gz

455 B

LEE595A67_S64_L001_R1_001_preprocessed.fastq.gz

300.62 MB

BBDuk (single-end)

LEE595A86_S85_L001_R1_001_statistics.txt.gz

461 B

fastqc

Directory

LEE595A86_S85_L001_R1_001_preprocessed.fastq.gz

243.11 MB

STAR

LEE595A83_S82_L001_R1_001_preprocessed_SJ.out.tab

1.09 MB

LEE595A83_S82_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.25 MB

LEE595A83_S82_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A83_S82_L001_R1_001_preprocessed.bam

440.00 MB

LEE595A83_S82_L001_R1_001_preprocessed.bam.bai

3.66 MB

BBDuk (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_statistics.txt.gz

466 B

LEE595A84_S83_L001_R1_001_preprocessed.fastq.gz

255.52 MB

BBDuk (single-end)

LEE595A85_S84_L001_R1_001_statistics.txt.gz

467 B

fastqc

Directory

LEE595A85_S84_L001_R1_001_preprocessed.fastq.gz

285.61 MB

BBDuk (single-end)

fastqc

Directory

MOD970A2_S36_L004_R1_001_preprocessed.fastq.gz

376.61 MB

MOD970A2_S36_L004_R1_001_statistics.txt.gz

456 B

BBDuk (single-end)

MOD970A1_S25_L004_R1_001_statistics.txt.gz

459 B

fastqc

Directory

MOD970A1_S25_L004_R1_001_preprocessed.fastq.gz

370.21 MB

BBDuk (single-end)

MOD970A4_S48_L004_R1_001_preprocessed.fastq.gz

364.44 MB

fastqc

Directory

MOD970A4_S48_L004_R1_001_statistics.txt.gz

458 B

STAR

LEE595A63_S60_L001_R1_001_preprocessed_SJ.out.tab

1.13 MB

LEE595A63_S60_L001_R1_001_preprocessed.bam.bai

3.39 MB

LEE595A63_S60_L001_R1_001_preprocessed.bam

318.77 MB

LEE595A63_S60_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.01 MB

LEE595A63_S60_L001_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

LEE595A72_S70_L001_R1_001_preprocessed_cpm.tab.gz

141.63 kB

LEE595A72_S70_L001_R1_001_preprocessed_rc.tab.gz

112.43 kB

LEE595A72_S70_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.99 kB

LEE595A72_S70_L001_R1_001_preprocessed_expressions.txt.gz

286.79 kB

STAR

LEE595A66_S63_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A66_S63_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.68 MB

LEE595A66_S63_L001_R1_001_preprocessed.bam.bai

3.34 MB

LEE595A66_S63_L001_R1_001_preprocessed_SJ.out.tab

1.18 MB

LEE595A66_S63_L001_R1_001_preprocessed.bam

338.39 MB

STAR

LEE595A68_S65_L001_R1_001_preprocessed.bam

51.70 MB

LEE595A68_S65_L001_R1_001_preprocessed_SJ.out.tab

411.76 kB

LEE595A68_S65_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

1.24 MB

LEE595A68_S65_L001_R1_001_preprocessed.bam.bai

2.63 MB

LEE595A68_S65_L001_R1_001_preprocessed.bw

2.00 MB

LEE595A68_S65_L001_R1_001_preprocessed_stats.txt

1.80 kB

BBDuk (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_statistics.txt.gz

469 B

MOD970A5_S49_L004_R1_001_preprocessed.fastq.gz

350.99 MB

BBDuk (single-end)

fastqc

Directory

MOD970A3_S47_L004_R1_001_statistics.txt.gz

462 B

MOD970A3_S47_L004_R1_001_preprocessed.fastq.gz

390.60 MB

STAR

LEE595A65_S62_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A65_S62_L001_R1_001_preprocessed.bam.bai

3.47 MB

LEE595A65_S62_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

13.20 MB

LEE595A65_S62_L001_R1_001_preprocessed.bam

468.98 MB

LEE595A65_S62_L001_R1_001_preprocessed_SJ.out.tab

1.36 MB

STAR

LEE595A64_S61_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.93 MB

LEE595A64_S61_L001_R1_001_preprocessed.bam.bai

3.38 MB

LEE595A64_S61_L001_R1_001_preprocessed.bam

420.45 MB

LEE595A64_S61_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A64_S61_L001_R1_001_preprocessed_SJ.out.tab

1.33 MB

STAR

LEE595A81_S80_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.47 MB

LEE595A81_S80_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A81_S80_L001_R1_001_preprocessed.bam

383.47 MB

LEE595A81_S80_L001_R1_001_preprocessed_SJ.out.tab

1.00 MB

LEE595A81_S80_L001_R1_001_preprocessed.bam.bai

3.77 MB

STAR

LEE595A86_S85_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.33 MB

LEE595A86_S85_L001_R1_001_preprocessed.bam

363.16 MB

LEE595A86_S85_L001_R1_001_preprocessed_SJ.out.tab

964.13 kB

LEE595A86_S85_L001_R1_001_preprocessed.bam.bai

3.74 MB

LEE595A86_S85_L001_R1_001_preprocessed_stats.txt

1.81 kB

STAR

LEE595A67_S64_L001_R1_001_preprocessed.bam.bai

3.36 MB

LEE595A67_S64_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A67_S64_L001_R1_001_preprocessed.bam

393.91 MB

LEE595A67_S64_L001_R1_001_preprocessed_SJ.out.tab

1.23 MB

LEE595A67_S64_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.46 MB

BBDuk (single-end)

LEE595A55_S51_L001_R1_001_preprocessed.fastq.gz

215.45 MB

fastqc

Directory

LEE595A55_S51_L001_R1_001_statistics.txt.gz

454 B

STAR

LEE595A84_S83_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.32 MB

LEE595A84_S83_L001_R1_001_preprocessed_SJ.out.tab

1010.90 kB

LEE595A84_S83_L001_R1_001_preprocessed.bam

379.04 MB

LEE595A84_S83_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A84_S83_L001_R1_001_preprocessed.bam.bai

3.71 MB

STAR

LEE595A85_S84_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A85_S84_L001_R1_001_preprocessed.bam

445.89 MB

LEE595A85_S84_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.60 MB

LEE595A85_S84_L001_R1_001_preprocessed.bam.bai

3.69 MB

LEE595A85_S84_L001_R1_001_preprocessed_SJ.out.tab

1.06 MB

STAR

MOD970A2_S36_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD970A2_S36_L004_R1_001_preprocessed_SJ.out.tab

1.08 MB

MOD970A2_S36_L004_R1_001_preprocessed.bam.bai

3.44 MB

MOD970A2_S36_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.59 MB

MOD970A2_S36_L004_R1_001_preprocessed.bam

595.25 MB

STAR

MOD970A1_S25_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD970A1_S25_L004_R1_001_preprocessed.bam

579.69 MB

MOD970A1_S25_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.58 MB

MOD970A1_S25_L004_R1_001_preprocessed.bam.bai

3.47 MB

MOD970A1_S25_L004_R1_001_preprocessed_SJ.out.tab

1.09 MB

STAR

MOD970A4_S48_L004_R1_001_preprocessed.bam

564.68 MB

MOD970A4_S48_L004_R1_001_preprocessed_SJ.out.tab

1.07 MB

MOD970A4_S48_L004_R1_001_preprocessed.bam.bai

3.48 MB

MOD970A4_S48_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD970A4_S48_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.75 MB

HTSeq-count (CPM)

LEE595A68_S65_L001_R1_001_preprocessed_cpm.tab.gz

116.08 kB

LEE595A68_S65_L001_R1_001_preprocessed_HTseq_rc.txt.gz

104.17 kB

LEE595A68_S65_L001_R1_001_preprocessed_rc.tab.gz

103.37 kB

LEE595A68_S65_L001_R1_001_preprocessed_expressions.txt.gz

252.22 kB

HTSeq-count (CPM)

LEE595A63_S60_L001_R1_001_preprocessed_expressions.txt.gz

285.67 kB

LEE595A63_S60_L001_R1_001_preprocessed_rc.tab.gz

112.35 kB

LEE595A63_S60_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.92 kB

LEE595A63_S60_L001_R1_001_preprocessed_cpm.tab.gz

138.98 kB

STAR

MOD970A5_S49_L004_R1_001_preprocessed.bam

544.00 MB

MOD970A5_S49_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.75 MB

MOD970A5_S49_L004_R1_001_preprocessed_SJ.out.tab

1.06 MB

MOD970A5_S49_L004_R1_001_preprocessed.bam.bai

3.49 MB

MOD970A5_S49_L004_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

LEE595A66_S63_L001_R1_001_preprocessed_rc.tab.gz

112.75 kB

LEE595A66_S63_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.29 kB

LEE595A66_S63_L001_R1_001_preprocessed_cpm.tab.gz

140.31 kB

LEE595A66_S63_L001_R1_001_preprocessed_expressions.txt.gz

288.17 kB

STAR

MOD970A3_S47_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.28 MB

MOD970A3_S47_L004_R1_001_preprocessed_SJ.out.tab

1.15 MB

MOD970A3_S47_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD970A3_S47_L004_R1_001_preprocessed.bam.bai

3.53 MB

MOD970A3_S47_L004_R1_001_preprocessed.bam

601.81 MB

HTSeq-count (CPM)

LEE595A64_S61_L001_R1_001_preprocessed_rc.tab.gz

113.77 kB

LEE595A64_S61_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.33 kB

LEE595A64_S61_L001_R1_001_preprocessed_cpm.tab.gz

143.46 kB

LEE595A64_S61_L001_R1_001_preprocessed_expressions.txt.gz

292.72 kB

HTSeq-count (CPM)

LEE595A65_S62_L001_R1_001_preprocessed_cpm.tab.gz

145.57 kB

LEE595A65_S62_L001_R1_001_preprocessed_expressions.txt.gz

295.05 kB

LEE595A65_S62_L001_R1_001_preprocessed_rc.tab.gz

114.05 kB

LEE595A65_S62_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.56 kB

HTSeq-count (CPM)

LEE595A81_S80_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.29 kB

LEE595A81_S80_L001_R1_001_preprocessed_expressions.txt.gz

289.68 kB

LEE595A81_S80_L001_R1_001_preprocessed_rc.tab.gz

112.72 kB

LEE595A81_S80_L001_R1_001_preprocessed_cpm.tab.gz

141.38 kB

HTSeq-count (CPM)

LEE595A82_S81_L001_R1_001_preprocessed_rc.tab.gz

113.25 kB

LEE595A82_S81_L001_R1_001_preprocessed_cpm.tab.gz

142.97 kB

LEE595A82_S81_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.75 kB

LEE595A82_S81_L001_R1_001_preprocessed_expressions.txt.gz

291.69 kB

HTSeq-count (CPM)

LEE595A67_S64_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.90 kB

LEE595A67_S64_L001_R1_001_preprocessed_expressions.txt.gz

290.40 kB

LEE595A67_S64_L001_R1_001_preprocessed_rc.tab.gz

113.36 kB

LEE595A67_S64_L001_R1_001_preprocessed_cpm.tab.gz

141.86 kB

HTSeq-count (CPM)

LEE595A86_S85_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.71 kB

LEE595A86_S85_L001_R1_001_preprocessed_cpm.tab.gz

139.79 kB

LEE595A86_S85_L001_R1_001_preprocessed_rc.tab.gz

112.17 kB

LEE595A86_S85_L001_R1_001_preprocessed_expressions.txt.gz

286.91 kB

HTSeq-count (CPM)

LEE595A84_S83_L001_R1_001_preprocessed_cpm.tab.gz

139.95 kB

LEE595A84_S83_L001_R1_001_preprocessed_rc.tab.gz

112.39 kB

LEE595A84_S83_L001_R1_001_preprocessed_expressions.txt.gz

287.78 kB

LEE595A84_S83_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.88 kB

HTSeq-count (CPM)

LEE595A83_S82_L001_R1_001_preprocessed_rc.tab.gz

113.21 kB

LEE595A83_S82_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.77 kB

LEE595A83_S82_L001_R1_001_preprocessed_cpm.tab.gz

142.67 kB

LEE595A83_S82_L001_R1_001_preprocessed_expressions.txt.gz

291.81 kB

BBDuk (single-end)

fastqc

Directory

LEE595A51_S47_L001_R1_001_preprocessed.fastq.gz

282.91 MB

LEE595A51_S47_L001_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A85_S84_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.51 kB

LEE595A85_S84_L001_R1_001_preprocessed_rc.tab.gz

113.02 kB

LEE595A85_S84_L001_R1_001_preprocessed_cpm.tab.gz

141.83 kB

LEE595A85_S84_L001_R1_001_preprocessed_expressions.txt.gz

289.39 kB

BBDuk (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001_statistics.txt.gz

134 B

LEE595A56_S52_L001_R1_001_preprocessed.fastq.gz

292.85 MB

BBDuk (single-end)

LEE595A54_S50_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A54_S50_L001_R1_001_preprocessed.fastq.gz

353.35 MB

BBDuk (single-end)

fastqc

Directory

LEE595A53_S49_L001_R1_001_preprocessed.fastq.gz

310.90 MB

LEE595A53_S49_L001_R1_001_statistics.txt.gz

135 B

HTSeq-count (CPM)

MOD970A1_S25_L004_R1_001_preprocessed_HTseq_rc.txt.gz

113.68 kB

MOD970A1_S25_L004_R1_001_preprocessed_expressions.txt.gz

293.36 kB

MOD970A1_S25_L004_R1_001_preprocessed_rc.tab.gz

113.17 kB

MOD970A1_S25_L004_R1_001_preprocessed_cpm.tab.gz

144.32 kB

HTSeq-count (CPM)

MOD970A2_S36_L004_R1_001_preprocessed_rc.tab.gz

113.31 kB

MOD970A2_S36_L004_R1_001_preprocessed_expressions.txt.gz

293.99 kB

MOD970A2_S36_L004_R1_001_preprocessed_HTseq_rc.txt.gz

113.81 kB

MOD970A2_S36_L004_R1_001_preprocessed_cpm.tab.gz

144.38 kB

BBDuk (single-end)

LEE595A52_S48_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A52_S48_L001_R1_001_preprocessed.fastq.gz

307.01 MB

HTSeq-count (CPM)

MOD970A4_S48_L004_R1_001_preprocessed_rc.tab.gz

113.00 kB

MOD970A4_S48_L004_R1_001_preprocessed_cpm.tab.gz

143.66 kB

MOD970A4_S48_L004_R1_001_preprocessed_expressions.txt.gz

292.17 kB

MOD970A4_S48_L004_R1_001_preprocessed_HTseq_rc.txt.gz

113.52 kB

BBDuk (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_statistics.txt.gz

135 B

LEE595A57_S53_L001_R1_001_preprocessed.fastq.gz

264.43 MB

HTSeq-count (CPM)

MOD970A5_S49_L004_R1_001_preprocessed_expressions.txt.gz

291.19 kB

MOD970A5_S49_L004_R1_001_preprocessed_cpm.tab.gz

142.41 kB

MOD970A5_S49_L004_R1_001_preprocessed_rc.tab.gz

112.89 kB

MOD970A5_S49_L004_R1_001_preprocessed_HTseq_rc.txt.gz

113.44 kB

HTSeq-count (CPM)

MOD970A3_S47_L004_R1_001_preprocessed_expressions.txt.gz

295.20 kB

MOD970A3_S47_L004_R1_001_preprocessed_HTseq_rc.txt.gz

114.00 kB

MOD970A3_S47_L004_R1_001_preprocessed_rc.tab.gz

113.53 kB

MOD970A3_S47_L004_R1_001_preprocessed_cpm.tab.gz

145.32 kB

BBDuk (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001_preprocessed.fastq.gz

292.85 MB

LEE595A56_S52_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A52_S48_L001_R1_001_preprocessed.fastq.gz

307.09 MB

LEE595A52_S48_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

LEE595A55_S51_L001_R1_001_preprocessed.fastq.gz

243.31 MB

fastqc

Directory

LEE595A55_S51_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A53_S49_L001_R1_001_preprocessed.fastq.gz

310.92 MB

LEE595A53_S49_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

LEE595A51_S47_L001_R1_001_statistics.txt.gz

134 B

LEE595A51_S47_L001_R1_001_preprocessed.fastq.gz

282.91 MB

fastqc

Directory

BBDuk (single-end)

LEE595A54_S50_L001_R1_001_preprocessed.fastq.gz

353.35 MB

fastqc

Directory

LEE595A54_S50_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_statistics.txt.gz

135 B

LEE595A57_S53_L001_R1_001_preprocessed.fastq.gz

264.45 MB

BBDuk (single-end)

fastqc

Directory

LEE595A61_S58_L001_R1_001_statistics.txt.gz

135 B

LEE595A61_S58_L001_R1_001_preprocessed.fastq.gz

307.91 MB

BBDuk (single-end)

LEE595A59_S55_L001_R1_001_preprocessed.fastq.gz

298.04 MB

fastqc

Directory

LEE595A59_S55_L001_R1_001_statistics.txt.gz

133 B

BBDuk (single-end)

LEE595A58_S54_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A58_S54_L001_R1_001_preprocessed.fastq.gz

501.00 MB

BBDuk (single-end)

fastqc

Directory

LEE595A68_S65_L001_R1_001_preprocessed.fastq.gz

40.04 MB

LEE595A68_S65_L001_R1_001_statistics.txt.gz

133 B

BBDuk (single-end)

LEE595A55_S51_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A55_S51_L001_R1_001_preprocessed.fastq.gz

243.30 MB

BBDuk (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001_statistics.txt.gz

134 B

LEE595A62_S59_L001_R1_001_preprocessed.fastq.gz

341.86 MB

BBDuk (single-end)

LEE595A61_S58_L001_R1_001_preprocessed.fastq.gz

307.89 MB

fastqc

Directory

LEE595A61_S58_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001_statistics.txt.gz

134 B

LEE595A62_S59_L001_R1_001_preprocessed.fastq.gz

341.86 MB

BBDuk (single-end)

LEE595A60_S57_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A60_S57_L001_R1_001_preprocessed.fastq.gz

312.30 MB

BBDuk (single-end)

LEE595A60_S57_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A60_S57_L001_R1_001_preprocessed.fastq.gz

312.30 MB

BBDuk (single-end)

LEE595A59_S55_L001_R1_001_preprocessed.fastq.gz

298.04 MB

LEE595A59_S55_L001_R1_001_statistics.txt.gz

133 B

fastqc

Directory

BBDuk (single-end)

LEE595A66_S63_L001_R1_001_statistics.txt.gz

135 B

LEE595A66_S63_L001_R1_001_preprocessed.fastq.gz

291.14 MB

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

LEE595A66_S63_L001_R1_001_preprocessed.fastq.gz

291.15 MB

LEE595A66_S63_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

LEE595A63_S60_L001_R1_001_preprocessed.fastq.gz

266.81 MB

fastqc

Directory

LEE595A63_S60_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_statistics.txt.gz

135 B

LEE595A71_S69_L001_R1_001_preprocessed.fastq.gz

404.19 MB

BBDuk (single-end)

fastqc

Directory

LEE595A64_S61_L001_R1_001_preprocessed.fastq.gz

359.68 MB

LEE595A64_S61_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A65_S62_L001_R1_001_statistics.txt.gz

134 B

LEE595A65_S62_L001_R1_001_preprocessed.fastq.gz

394.71 MB

BBDuk (single-end)

fastqc

Directory

LEE595A58_S54_L001_R1_001_preprocessed.fastq.gz

501.00 MB

LEE595A58_S54_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

LEE595A65_S62_L001_R1_001_preprocessed.fastq.gz

394.72 MB

fastqc

Directory

LEE595A65_S62_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001_preprocessed.fastq.gz

482.17 MB

LEE595A75_S73_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A63_S60_L001_R1_001_preprocessed.fastq.gz

266.80 MB

LEE595A63_S60_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

LEE595A69_S66_L001_R1_001_preprocessed.fastq.gz

357.01 MB

LEE595A69_S66_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

LEE595A70_S68_L001_R1_001_preprocessed.fastq.gz

357.33 MB

LEE595A70_S68_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A72_S70_L001_R1_001_statistics.txt.gz

135 B

LEE595A72_S70_L001_R1_001_preprocessed.fastq.gz

283.97 MB

BBDuk (single-end)

fastqc

Directory

LEE595A67_S64_L001_R1_001_statistics.txt.gz

134 B

LEE595A67_S64_L001_R1_001_preprocessed.fastq.gz

327.81 MB

BBDuk (single-end)

LEE595A85_S84_L001_R1_001_statistics.txt.gz

135 B

LEE595A85_S84_L001_R1_001_preprocessed.fastq.gz

338.56 MB

fastqc

Directory

BBDuk (single-end)

LEE595A79_S77_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A79_S77_L001_R1_001_preprocessed.fastq.gz

468.41 MB

BBDuk (single-end)

fastqc

Directory

LEE595A69_S66_L001_R1_001_preprocessed.fastq.gz

357.01 MB

LEE595A69_S66_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

LEE595A74_S72_L001_R1_001_preprocessed.fastq.gz

308.60 MB

fastqc

Directory

LEE595A74_S72_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A70_S68_L001_R1_001_preprocessed.fastq.gz

357.32 MB

LEE595A70_S68_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A68_S65_L001_R1_001_statistics.txt.gz

133 B

LEE595A68_S65_L001_R1_001_preprocessed.fastq.gz

40.03 MB

BBDuk (single-end)

fastqc

Directory

LEE595A73_S71_L001_R1_001_preprocessed.fastq.gz

363.91 MB

LEE595A73_S71_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A64_S61_L001_R1_001_statistics.txt.gz

134 B

LEE595A64_S61_L001_R1_001_preprocessed.fastq.gz

359.68 MB

BBDuk (single-end)

fastqc

Directory

LEE595A74_S72_L001_R1_001_statistics.txt.gz

134 B

LEE595A74_S72_L001_R1_001_preprocessed.fastq.gz

308.60 MB

BBDuk (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_preprocessed.fastq.gz

404.23 MB

LEE595A71_S69_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A73_S71_L001_R1_001_statistics.txt.gz

135 B

LEE595A73_S71_L001_R1_001_preprocessed.fastq.gz

363.93 MB

BBDuk (single-end)

fastqc

Directory

LEE595A78_S76_L001_R1_001_preprocessed.fastq.gz

465.08 MB

LEE595A78_S76_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_preprocessed.fastq.gz

309.43 MB

LEE595A84_S83_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A72_S70_L001_R1_001_statistics.txt.gz

135 B

LEE595A72_S70_L001_R1_001_preprocessed.fastq.gz

283.97 MB

BBDuk (single-end)

fastqc

Directory

LEE595A80_S79_L001_R1_001_statistics.txt.gz

135 B

LEE595A80_S79_L001_R1_001_preprocessed.fastq.gz

431.86 MB

BBDuk (single-end)

fastqc

Directory

MOD970A4_S48_L004_R1_001_preprocessed.fastq.gz

421.68 MB

MOD970A4_S48_L004_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

LEE595A77_S75_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A77_S75_L001_R1_001_preprocessed.fastq.gz

339.69 MB

HTSeq-count (CPM)

LEE595A65_S62_L001_R1_001_preprocessed_rc.tab.gz

114.06 kB

LEE595A65_S62_L001_R1_001_preprocessed_cpm.tab.gz

145.45 kB

LEE595A65_S62_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.57 kB

LEE595A65_S62_L001_R1_001_preprocessed_expressions.txt.gz

292.41 kB

HTSeq-count (CPM)

LEE595A67_S64_L001_R1_001_preprocessed_expressions.txt.gz

287.34 kB

LEE595A67_S64_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.94 kB

LEE595A67_S64_L001_R1_001_preprocessed_rc.tab.gz

113.39 kB

LEE595A67_S64_L001_R1_001_preprocessed_cpm.tab.gz

141.28 kB

BBDuk (single-end)

LEE595A76_S74_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A76_S74_L001_R1_001_preprocessed.fastq.gz

334.95 MB

BBDuk (single-end)

fastqc

Directory

LEE595A77_S75_L001_R1_001_preprocessed.fastq.gz

339.71 MB

LEE595A77_S75_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

LEE595A76_S74_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A76_S74_L001_R1_001_preprocessed.fastq.gz

334.95 MB

BBDuk (single-end)

fastqc

Directory

LEE595A67_S64_L001_R1_001_statistics.txt.gz

134 B

LEE595A67_S64_L001_R1_001_preprocessed.fastq.gz

327.81 MB

BBDuk (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001_statistics.txt.gz

135 B

LEE595A75_S73_L001_R1_001_preprocessed.fastq.gz

482.14 MB

BBDuk (single-end)

fastqc

Directory

LEE595A83_S82_L001_R1_001_preprocessed.fastq.gz

371.14 MB

LEE595A83_S82_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A82_S81_L001_R1_001_statistics.txt.gz

134 B

LEE595A82_S81_L001_R1_001_preprocessed.fastq.gz

355.37 MB

BBDuk (single-end)

fastqc

Directory

MOD970A1_S25_L004_R1_001_statistics.txt.gz

134 B

MOD970A1_S25_L004_R1_001_preprocessed.fastq.gz

436.32 MB

BBDuk (single-end)

LEE595A80_S79_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A80_S79_L001_R1_001_preprocessed.fastq.gz

431.86 MB

BBDuk (single-end)

fastqc

Directory

LEE595A82_S81_L001_R1_001_statistics.txt.gz

134 B

LEE595A82_S81_L001_R1_001_preprocessed.fastq.gz

355.38 MB

BBDuk (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001_preprocessed.fastq.gz

319.09 MB

LEE595A81_S80_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

LEE595A78_S76_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A78_S76_L001_R1_001_preprocessed.fastq.gz

464.99 MB

HTSeq-count (CPM)

LEE595A70_S68_L001_R1_001_preprocessed_cpm.tab.gz

145.64 kB

LEE595A70_S68_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.09 kB

LEE595A70_S68_L001_R1_001_preprocessed_rc.tab.gz

113.59 kB

LEE595A70_S68_L001_R1_001_preprocessed_expressions.txt.gz

293.11 kB

BBDuk (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001_statistics.txt.gz

135 B

LEE595A81_S80_L001_R1_001_preprocessed.fastq.gz

319.11 MB

BBDuk (single-end)

fastqc

Directory

LEE595A79_S77_L001_R1_001_preprocessed.fastq.gz

468.44 MB

LEE595A79_S77_L001_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A69_S66_L001_R1_001_preprocessed_rc.tab.gz

113.45 kB

LEE595A69_S66_L001_R1_001_preprocessed_expressions.txt.gz

291.88 kB

LEE595A69_S66_L001_R1_001_preprocessed_cpm.tab.gz

144.26 kB

LEE595A69_S66_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.96 kB

BBDuk (single-end)

fastqc

Directory

LEE595A86_S85_L001_R1_001_statistics.txt.gz

134 B

LEE595A86_S85_L001_R1_001_preprocessed.fastq.gz

296.99 MB

HTSeq-count (CPM)

LEE595A66_S63_L001_R1_001_preprocessed_expressions.txt.gz

295.73 kB

LEE595A66_S63_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.01 kB

LEE595A66_S63_L001_R1_001_preprocessed_cpm.tab.gz

146.25 kB

LEE595A66_S63_L001_R1_001_preprocessed_rc.tab.gz

114.41 kB

BBDuk (single-end)

fastqc

Directory

LEE595A85_S84_L001_R1_001_statistics.txt.gz

135 B

LEE595A85_S84_L001_R1_001_preprocessed.fastq.gz

338.55 MB

HTSeq-count (CPM)

LEE595A64_S61_L001_R1_001_preprocessed_expressions.txt.gz

301.04 kB

LEE595A64_S61_L001_R1_001_preprocessed_cpm.tab.gz

149.73 kB

LEE595A64_S61_L001_R1_001_preprocessed_rc.tab.gz

115.29 kB

LEE595A64_S61_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.89 kB

BBDuk (single-end)

LEE595A83_S82_L001_R1_001_preprocessed.fastq.gz

371.13 MB

fastqc

Directory

LEE595A83_S82_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_preprocessed.fastq.gz

309.45 MB

LEE595A84_S83_L001_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A65_S62_L001_R1_001_preprocessed_HTseq_rc.txt.gz

116.23 kB

LEE595A65_S62_L001_R1_001_preprocessed_expressions.txt.gz

303.69 kB

LEE595A65_S62_L001_R1_001_preprocessed_cpm.tab.gz

151.37 kB

LEE595A65_S62_L001_R1_001_preprocessed_rc.tab.gz

115.58 kB

HTSeq-count (CPM)

LEE595A68_S65_L001_R1_001_preprocessed_cpm.tab.gz

118.15 kB

LEE595A68_S65_L001_R1_001_preprocessed_rc.tab.gz

104.56 kB

LEE595A68_S65_L001_R1_001_preprocessed_HTseq_rc.txt.gz

105.39 kB

LEE595A68_S65_L001_R1_001_preprocessed_expressions.txt.gz

254.58 kB

BBDuk (single-end)

LEE595A86_S85_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A86_S85_L001_R1_001_preprocessed.fastq.gz

296.99 MB

BBDuk (single-end)

fastqc

Directory

MOD970A3_S47_L004_R1_001_statistics.txt.gz

135 B

MOD970A3_S47_L004_R1_001_preprocessed.fastq.gz

461.67 MB

BBDuk (single-end)

MOD970A1_S25_L004_R1_001_statistics.txt.gz

134 B

fastqc

Directory

MOD970A1_S25_L004_R1_001_preprocessed.fastq.gz

436.34 MB

HTSeq-count (CPM)

LEE595A63_S60_L001_R1_001_preprocessed_rc.tab.gz

113.99 kB

LEE595A63_S60_L001_R1_001_preprocessed_expressions.txt.gz

292.56 kB

LEE595A63_S60_L001_R1_001_preprocessed_cpm.tab.gz

144.21 kB

LEE595A63_S60_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.60 kB

BBDuk (single-end)

MOD970A3_S47_L004_R1_001_preprocessed.fastq.gz

461.56 MB

fastqc

Directory

MOD970A3_S47_L004_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

MOD970A2_S36_L004_R1_001_statistics.txt.gz

134 B

MOD970A2_S36_L004_R1_001_preprocessed.fastq.gz

438.28 MB

BBDuk (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_preprocessed.fastq.gz

413.76 MB

MOD970A5_S49_L004_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A81_S80_L001_R1_001_preprocessed_expressions.txt.gz

296.10 kB

LEE595A81_S80_L001_R1_001_preprocessed_cpm.tab.gz

146.19 kB

LEE595A81_S80_L001_R1_001_preprocessed_rc.tab.gz

114.49 kB

LEE595A81_S80_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.11 kB

BBDuk (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_preprocessed.fastq.gz

413.78 MB

MOD970A5_S49_L004_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A82_S81_L001_R1_001_preprocessed_cpm.tab.gz

149.14 kB

LEE595A82_S81_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.62 kB

LEE595A82_S81_L001_R1_001_preprocessed_rc.tab.gz

115.00 kB

LEE595A82_S81_L001_R1_001_preprocessed_expressions.txt.gz

300.11 kB

BBDuk (single-end)

MOD970A4_S48_L004_R1_001_statistics.txt.gz

134 B

fastqc

Directory

MOD970A4_S48_L004_R1_001_preprocessed.fastq.gz

421.66 MB

HTSeq-count (CPM)

LEE595A67_S64_L001_R1_001_preprocessed_expressions.txt.gz

298.18 kB

LEE595A67_S64_L001_R1_001_preprocessed_cpm.tab.gz

147.20 kB

LEE595A67_S64_L001_R1_001_preprocessed_rc.tab.gz

114.92 kB

LEE595A67_S64_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.58 kB

BBDuk (single-end)

MOD970A2_S36_L004_R1_001_preprocessed.fastq.gz

438.30 MB

fastqc

Directory

MOD970A2_S36_L004_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A83_S82_L001_R1_001_preprocessed_HTseq_rc.txt.gz

116.01 kB

LEE595A83_S82_L001_R1_001_preprocessed_cpm.tab.gz

148.90 kB

LEE595A83_S82_L001_R1_001_preprocessed_expressions.txt.gz

299.78 kB

LEE595A83_S82_L001_R1_001_preprocessed_rc.tab.gz

115.40 kB

HTSeq-count (CPM)

LEE595A86_S85_L001_R1_001_preprocessed_expressions.txt.gz

294.58 kB

LEE595A86_S85_L001_R1_001_preprocessed_rc.tab.gz

113.96 kB

LEE595A86_S85_L001_R1_001_preprocessed_cpm.tab.gz

144.80 kB

LEE595A86_S85_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.58 kB

HTSeq-count (CPM)

LEE595A84_S83_L001_R1_001_preprocessed_rc.tab.gz

114.32 kB

LEE595A84_S83_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.88 kB

LEE595A84_S83_L001_R1_001_preprocessed_cpm.tab.gz

145.51 kB

LEE595A84_S83_L001_R1_001_preprocessed_expressions.txt.gz

295.04 kB

HTSeq-count (CPM)

LEE595A85_S84_L001_R1_001_preprocessed_rc.tab.gz

114.82 kB

LEE595A85_S84_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.45 kB

LEE595A85_S84_L001_R1_001_preprocessed_cpm.tab.gz

147.32 kB

LEE595A85_S84_L001_R1_001_preprocessed_expressions.txt.gz

297.88 kB

HTSeq-count (CPM)

MOD970A2_S36_L004_R1_001_preprocessed_cpm.tab.gz

151.19 kB

MOD970A2_S36_L004_R1_001_preprocessed_rc.tab.gz

115.11 kB

MOD970A2_S36_L004_R1_001_preprocessed_expressions.txt.gz

302.97 kB

MOD970A2_S36_L004_R1_001_preprocessed_HTseq_rc.txt.gz

115.73 kB

HTSeq-count (CPM)

MOD970A1_S25_L004_R1_001_preprocessed_expressions.txt.gz

302.40 kB

MOD970A1_S25_L004_R1_001_preprocessed_rc.tab.gz

115.00 kB

MOD970A1_S25_L004_R1_001_preprocessed_cpm.tab.gz

150.95 kB

MOD970A1_S25_L004_R1_001_preprocessed_HTseq_rc.txt.gz

115.58 kB

HTSeq-count (CPM)

MOD970A4_S48_L004_R1_001_preprocessed_cpm.tab.gz

150.22 kB

MOD970A4_S48_L004_R1_001_preprocessed_rc.tab.gz

114.89 kB

MOD970A4_S48_L004_R1_001_preprocessed_HTseq_rc.txt.gz

115.49 kB

MOD970A4_S48_L004_R1_001_preprocessed_expressions.txt.gz

301.86 kB

HTSeq-count (CPM)

MOD970A5_S49_L004_R1_001_preprocessed_rc.tab.gz

114.72 kB

MOD970A5_S49_L004_R1_001_preprocessed_cpm.tab.gz

150.09 kB

MOD970A5_S49_L004_R1_001_preprocessed_HTseq_rc.txt.gz

115.31 kB

MOD970A5_S49_L004_R1_001_preprocessed_expressions.txt.gz

301.41 kB

HTSeq-count (CPM)

MOD970A3_S47_L004_R1_001_preprocessed_cpm.tab.gz

152.49 kB

MOD970A3_S47_L004_R1_001_preprocessed_rc.tab.gz

115.46 kB

MOD970A3_S47_L004_R1_001_preprocessed_expressions.txt.gz

304.94 kB

MOD970A3_S47_L004_R1_001_preprocessed_HTseq_rc.txt.gz

116.08 kB

Salmon Quant

LEE595A51_S47_L001_R1_001_preprocessed_expressions.txt.gz

240.94 kB

LEE595A51_S47_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.34 kB

salmon_output

Directory

LEE595A51_S47_L001_R1_001_preprocessed_tpm.txt.gz

133.21 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A51_S47_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.fastq.gz

282.38 MB

fastqc

Directory

Salmon Quant

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

salmon_output

Directory

LEE595A54_S50_L001_R1_001_preprocessed_expressions.txt.gz

242.06 kB

LEE595A54_S50_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A54_S50_L001_R1_001_preprocessed_tpm.txt.gz

134.30 kB

LEE595A54_S50_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.73 kB

Salmon Quant

salmon_output

Directory

LEE595A52_S48_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A52_S48_L001_R1_001_preprocessed_expressions.txt.gz

241.60 kB

LEE595A52_S48_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.37 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A52_S48_L001_R1_001_preprocessed_tpm.txt.gz

134.05 kB

Salmon Quant

salmon_output

Directory

LEE595A56_S52_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.11 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A56_S52_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A56_S52_L001_R1_001_preprocessed_tpm.txt.gz

132.28 kB

LEE595A56_S52_L001_R1_001_preprocessed_expressions.txt.gz

239.71 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.fastq.gz

292.29 MB

Salmon Quant

LEE595A55_S51_L001_R1_001_preprocessed_tpm.txt.gz

132.35 kB

salmon_output

Directory

LEE595A55_S51_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A55_S51_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.99 kB

LEE595A55_S51_L001_R1_001_preprocessed_expressions.txt.gz

239.82 kB

Salmon Quant

LEE595A53_S49_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A53_S49_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

211.34 kB

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A53_S49_L001_R1_001_preprocessed_expressions.txt.gz

242.49 kB

LEE595A53_S49_L001_R1_001_preprocessed_tpm.txt.gz

134.62 kB

Salmon Quant

salmon_output

Directory

LEE595A57_S53_L001_R1_001_preprocessed_expressions.txt.gz

240.84 kB

LEE595A57_S53_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.64 kB

LEE595A57_S53_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A57_S53_L001_R1_001_preprocessed_tpm.txt.gz

133.11 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.fastq.gz

263.95 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.fastq.gz

307.36 MB

Salmon Quant

LEE595A61_S58_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A61_S58_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.71 kB

LEE595A61_S58_L001_R1_001_preprocessed_expressions.txt.gz

240.80 kB

salmon_output

Directory

LEE595A61_S58_L001_R1_001_preprocessed_tpm.txt.gz

133.37 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Salmon Quant

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

salmon_output

Directory

LEE595A58_S54_L001_R1_001_preprocessed_expressions.txt.gz

244.61 kB

LEE595A58_S54_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

214.02 kB

LEE595A58_S54_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A58_S54_L001_R1_001_preprocessed_tpm.txt.gz

136.28 kB

Salmon Quant

LEE595A62_S59_L001_R1_001_preprocessed_expressions.txt.gz

241.76 kB

salmon_output

Directory

LEE595A62_S59_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.85 kB

LEE595A62_S59_L001_R1_001_preprocessed_tpm.txt.gz

133.88 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A62_S59_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.fastq.gz

341.24 MB

Salmon Quant

salmon_output

Directory

LEE595A59_S55_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A59_S55_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.70 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A59_S55_L001_R1_001_preprocessed_expressions.txt.gz

241.28 kB

LEE595A59_S55_L001_R1_001_preprocessed_tpm.txt.gz

133.70 kB

Salmon Quant

LEE595A60_S57_L001_R1_001_preprocessed_tpm.txt.gz

133.43 kB

salmon_output

Directory

LEE595A60_S57_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.07 kB

LEE595A60_S57_L001_R1_001_preprocessed_expressions.txt.gz

240.95 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A60_S57_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.fastq.gz

311.83 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.fastq.gz

297.54 MB

Salmon Quant

LEE595A66_S63_L001_R1_001_preprocessed_tpm.txt.gz

133.19 kB

salmon_output

Directory

LEE595A66_S63_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A66_S63_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.84 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A66_S63_L001_R1_001_preprocessed_expressions.txt.gz

240.60 kB

Subsample FASTQ (single-end)

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.fastq.gz

290.72 MB

fastqc

Directory

Salmon Quant

LEE595A64_S61_L001_R1_001_preprocessed_expressions.txt.gz

242.21 kB

salmon_output

Directory

LEE595A64_S61_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A64_S61_L001_R1_001_preprocessed_tpm.txt.gz

134.48 kB

LEE595A64_S61_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

211.13 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Subsample FASTQ (single-end)

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.fastq.gz

394.22 MB

fastqc

Directory

Salmon Quant

salmon_output

Directory

LEE595A65_S62_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A65_S62_L001_R1_001_preprocessed_tpm.txt.gz

133.64 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A65_S62_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.11 kB

LEE595A65_S62_L001_R1_001_preprocessed_expressions.txt.gz

241.46 kB

Salmon Quant

salmon_output

Directory

LEE595A63_S60_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.53 kB

LEE595A63_S60_L001_R1_001_preprocessed_tpm.txt.gz

132.82 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A63_S60_L001_R1_001_preprocessed_expressions.txt.gz

240.40 kB

LEE595A63_S60_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.fastq.gz

266.44 MB

fastqc

Directory

Salmon Quant

LEE595A69_S66_L001_R1_001_preprocessed_expressions.txt.gz

239.92 kB

salmon_output

Directory

LEE595A69_S66_L001_R1_001_preprocessed_tpm.txt.gz

132.54 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A69_S66_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.45 kB

LEE595A69_S66_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.fastq.gz

327.32 MB

Salmon Quant

salmon_output

Directory

LEE595A67_S64_L001_R1_001_preprocessed_tpm.txt.gz

134.02 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A67_S64_L001_R1_001_preprocessed_expressions.txt.gz

241.70 kB

LEE595A67_S64_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A67_S64_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.09 kB

Salmon Quant

salmon_output

Directory

LEE595A68_S65_L001_R1_001_preprocessed.sf

1.47 MB

LEE595A68_S65_L001_R1_001_preprocessed_expressions.txt.gz

225.30 kB

LEE595A68_S65_L001_R1_001_preprocessed_tpm.txt.gz

120.41 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A68_S65_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

189.88 kB

Salmon Quant

salmon_output

Directory

LEE595A70_S68_L001_R1_001_preprocessed_expressions.txt.gz

240.66 kB

LEE595A70_S68_L001_R1_001_preprocessed_tpm.txt.gz

133.10 kB

LEE595A70_S68_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A70_S68_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.95 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Salmon Quant

salmon_output

Directory

LEE595A74_S72_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

205.79 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A74_S72_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A74_S72_L001_R1_001_preprocessed_expressions.txt.gz

238.41 kB

LEE595A74_S72_L001_R1_001_preprocessed_tpm.txt.gz

131.11 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.fastq.gz

356.66 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.fastq.gz

308.07 MB

Salmon Quant

LEE595A73_S71_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

206.71 kB

LEE595A73_S71_L001_R1_001_preprocessed_expressions.txt.gz

239.50 kB

salmon_output

Directory

LEE595A73_S71_L001_R1_001_preprocessed_tpm.txt.gz

132.17 kB

LEE595A73_S71_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Salmon Quant

salmon_output

Directory

LEE595A71_S69_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A71_S69_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.06 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A71_S69_L001_R1_001_preprocessed_expressions.txt.gz

240.65 kB

LEE595A71_S69_L001_R1_001_preprocessed_tpm.txt.gz

133.25 kB

Salmon Quant

salmon_output

Directory

LEE595A72_S70_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A72_S70_L001_R1_001_preprocessed_expressions.txt.gz

238.03 kB

LEE595A72_S70_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

204.62 kB

LEE595A72_S70_L001_R1_001_preprocessed_tpm.txt.gz

130.81 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.fastq.gz

403.54 MB

Salmon Quant

LEE595A76_S74_L001_R1_001_preprocessed_expressions.txt.gz

240.19 kB

LEE595A76_S74_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.67 kB

salmon_output

Directory

LEE595A76_S74_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A76_S74_L001_R1_001_preprocessed_tpm.txt.gz

132.68 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.fastq.gz

283.46 MB

Salmon Quant

salmon_output

Directory

LEE595A77_S75_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A77_S75_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.01 kB

LEE595A77_S75_L001_R1_001_preprocessed_tpm.txt.gz

132.52 kB

LEE595A77_S75_L001_R1_001_preprocessed_expressions.txt.gz

239.70 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.fastq.gz

334.42 MB

Salmon Quant

salmon_output

Directory

LEE595A75_S73_L001_R1_001_preprocessed_expressions.txt.gz

242.73 kB

LEE595A75_S73_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.88 kB

LEE595A75_S73_L001_R1_001_preprocessed_tpm.txt.gz

134.76 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A75_S73_L001_R1_001_preprocessed.sf

1.49 MB

Salmon Quant

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A82_S81_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.04 kB

LEE595A82_S81_L001_R1_001_preprocessed_expressions.txt.gz

240.37 kB

LEE595A82_S81_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A82_S81_L001_R1_001_preprocessed_tpm.txt.gz

132.72 kB

Salmon Quant

LEE595A80_S79_L001_R1_001_preprocessed_tpm.txt.gz

134.04 kB

salmon_output

Directory

LEE595A80_S79_L001_R1_001_preprocessed_expressions.txt.gz

241.75 kB

LEE595A80_S79_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.71 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A80_S79_L001_R1_001_preprocessed.sf

1.49 MB

Salmon Quant

salmon_output

Directory

LEE595A78_S76_L001_R1_001_preprocessed_expressions.txt.gz

241.91 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A78_S76_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A78_S76_L001_R1_001_preprocessed_tpm.txt.gz

134.07 kB

LEE595A78_S76_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.57 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.fastq.gz

464.46 MB

Salmon Quant

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A81_S80_L001_R1_001_preprocessed_expressions.txt.gz

239.43 kB

LEE595A81_S80_L001_R1_001_preprocessed_tpm.txt.gz

131.94 kB

LEE595A81_S80_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

206.41 kB

LEE595A81_S80_L001_R1_001_preprocessed.sf

1.48 MB

Salmon Quant

salmon_output

Directory

LEE595A79_S77_L001_R1_001_preprocessed_expressions.txt.gz

241.64 kB

LEE595A79_S77_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A79_S77_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.55 kB

LEE595A79_S77_L001_R1_001_preprocessed_tpm.txt.gz

133.87 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.fastq.gz

467.81 MB

Salmon Quant

salmon_output

Directory

LEE595A85_S84_L001_R1_001_preprocessed_tpm.txt.gz

132.89 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A85_S84_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.80 kB

LEE595A85_S84_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A85_S84_L001_R1_001_preprocessed_expressions.txt.gz

240.50 kB

Salmon Quant

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A83_S82_L001_R1_001_preprocessed_tpm.txt.gz

132.56 kB

LEE595A83_S82_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.51 kB

LEE595A83_S82_L001_R1_001_preprocessed_expressions.txt.gz

239.99 kB

LEE595A83_S82_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.fastq.gz

338.17 MB

fastqc

Directory

Subsample FASTQ (single-end)

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.fastq.gz

370.65 MB

fastqc

Directory

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.fastq.gz

309.05 MB

Salmon Quant

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A84_S83_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

205.83 kB

LEE595A84_S83_L001_R1_001_preprocessed_tpm.txt.gz

131.48 kB

LEE595A84_S83_L001_R1_001_preprocessed_expressions.txt.gz

238.64 kB

LEE595A84_S83_L001_R1_001_preprocessed.sf

1.48 MB

Salmon Quant

LEE595A86_S85_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

205.88 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

salmon_output

Directory

LEE595A86_S85_L001_R1_001_preprocessed_expressions.txt.gz

238.65 kB

LEE595A86_S85_L001_R1_001_preprocessed_tpm.txt.gz

131.25 kB

LEE595A86_S85_L001_R1_001_preprocessed.sf

1.48 MB

Salmon Quant

MOD970A1_S25_L004_R1_001_preprocessed_tpm.txt.gz

132.35 kB

salmon_output

Directory

MOD970A1_S25_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

207.22 kB

MOD970A1_S25_L004_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

MOD970A1_S25_L004_R1_001_preprocessed_expressions.txt.gz

239.84 kB

Salmon Quant

salmon_output

Directory

MOD970A3_S47_L004_R1_001_preprocessed_expressions.txt.gz

240.35 kB

MOD970A3_S47_L004_R1_001_preprocessed_tpm.txt.gz

132.65 kB

MOD970A3_S47_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

207.61 kB

MOD970A3_S47_L004_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Salmon Quant

salmon_output

Directory

MOD970A4_S48_L004_R1_001_preprocessed.sf

1.48 MB

MOD970A4_S48_L004_R1_001_preprocessed_tpm.txt.gz

132.46 kB

MOD970A4_S48_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

207.39 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

MOD970A4_S48_L004_R1_001_preprocessed_expressions.txt.gz

240.04 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.fastq.gz

420.97 MB

Salmon Quant

MOD970A2_S36_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

207.39 kB

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

MOD970A2_S36_L004_R1_001_preprocessed_tpm.txt.gz

132.38 kB

MOD970A2_S36_L004_R1_001_preprocessed_expressions.txt.gz

239.92 kB

MOD970A2_S36_L004_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.fastq.gz

437.60 MB

Salmon Quant

salmon_output

Directory

MOD970A5_S49_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

206.48 kB

MOD970A5_S49_L004_R1_001_preprocessed_tpm.txt.gz

132.02 kB

MOD970A5_S49_L004_R1_001_preprocessed.sf

1.48 MB

MOD970A5_S49_L004_R1_001_preprocessed_expressions.txt.gz

239.65 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.fastq.gz

413.14 MB

STAR

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.18 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam

281.45 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

45.28 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam.bai

2.78 MB

STAR

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

43.56 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam.bai

2.75 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.34 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam

362.93 MB

STAR

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.29 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

258.70 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam

19.31 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.29 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam

19.31 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

258.70 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam

308.54 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam.bai

2.79 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.24 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.96 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

320.40 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.43 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam

26.63 MB

STAR

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.43 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

320.40 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam

26.63 MB

STAR

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.17 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam.bai

2.87 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.66 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam

298.68 MB

STAR

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam

20.34 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

281.13 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.01 kB

STAR

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam

20.35 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.01 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

281.13 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam

239.83 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.09 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam.bai

2.69 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.34 MB

STAR

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam

16.99 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.64 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

270.80 MB

STAR

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

270.80 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.64 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam

17.00 MB

STAR

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam.bai

2.77 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.25 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

44.15 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam

308.11 MB

STAR

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam

16.05 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

223.05 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.21 kB

STAR

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.21 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam

16.06 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

223.05 MB

STAR

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam.bai

2.68 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.09 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

33.45 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam

271.13 MB

STAR

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

286.26 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam

19.20 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.16 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.16 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam

19.20 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

286.26 MB

STAR

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

243.36 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.95 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam

16.52 MB

STAR

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam.bai

2.71 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam

290.76 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.67 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.12 MB

STAR

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam

16.52 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.95 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

243.36 MB

STAR

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam.bai

2.81 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam

511.16 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

51.60 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.54 MB

STAR

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.85 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam

18.20 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

284.83 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

284.83 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.85 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam

18.20 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam

339.69 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam.bai

2.72 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

49.20 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.19 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.31 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

457.55 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam

34.08 MB

BBDuk (single-end)

fastqc

Directory

LEE595A72_S70_L001_R1_001_preprocessed.fastq.gz

243.01 MB

LEE595A72_S70_L001_R1_001_statistics.txt.gz

467 B

STAR

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

315.23 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.32 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam

20.89 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

457.55 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam

34.08 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.31 kB

STAR

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam

316.68 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.77 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam.bai

2.68 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.20 MB

STAR

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam

15.19 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

315.38 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.66 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

315.23 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.32 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam

20.89 MB

STAR

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam

21.65 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.74 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

285.53 MB

BBDuk (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_statistics.txt.gz

473 B

LEE595A71_S69_L001_R1_001_preprocessed.fastq.gz

336.76 MB

STAR

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.19 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

45.46 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam

300.97 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam.bai

2.68 MB

STAR

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

285.53 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam

21.65 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.74 kB

STAR

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam.bai

2.73 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.18 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam

317.98 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

34.28 MB

STAR

LEE595A56_S52_L001_R1_001_preprocessed.bam.bai

3.53 MB

LEE595A56_S52_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.57 MB

LEE595A56_S52_L001_R1_001_preprocessed.bam

399.39 MB

LEE595A56_S52_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A56_S52_L001_R1_001_preprocessed_SJ.out.tab

1.19 MB

LEE595A56_S52_L001_R1_001_preprocessed.bw

8.89 MB

STAR

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam

19.43 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

273.51 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.70 kB

BBDuk (single-end)

LEE595A73_S71_L001_R1_001_statistics.txt.gz

461 B

fastqc

Directory

LEE595A73_S71_L001_R1_001_preprocessed.fastq.gz

299.91 MB

STAR

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

273.51 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.70 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam

19.42 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

42.49 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam.bai

2.79 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.33 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam

395.41 MB

STAR

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

254.97 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam

30.39 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.16 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam

30.40 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

254.97 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.16 kB

STAR

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.36 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam.bai

2.81 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam

431.03 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.79 MB

STAR

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam

36.17 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

316.52 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.30 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.30 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

316.52 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam

36.18 MB

STAR

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam.bai

2.74 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam

295.67 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.12 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.08 MB

BBDuk (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001_statistics.txt.gz

469 B

LEE595A75_S73_L001_R1_001_preprocessed.fastq.gz

404.64 MB

STAR

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_SJ.out.tab

12.05 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

347.16 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam

40.36 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A57_S53_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.35 MB

LEE595A57_S53_L001_R1_001_preprocessed.bw

5.75 MB

LEE595A57_S53_L001_R1_001_preprocessed_SJ.out.tab

1.10 MB

LEE595A57_S53_L001_R1_001_preprocessed.bam

357.66 MB

LEE595A57_S53_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A57_S53_L001_R1_001_preprocessed.bam.bai

3.31 MB

STAR

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

235.67 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam

26.25 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.34 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

347.16 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam

40.37 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_SJ.out.tab

12.05 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

33.36 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam

372.38 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.24 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam.bai

2.80 MB

BBDuk (single-end)

fastqc

Directory

LEE595A77_S75_L001_R1_001_statistics.txt.gz

477 B

LEE595A77_S75_L001_R1_001_preprocessed.fastq.gz

277.53 MB

STAR

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam

26.26 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

235.67 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.34 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

BBDuk (single-end)

fastqc

Directory

LEE595A76_S74_L001_R1_001_preprocessed.fastq.gz

279.41 MB

LEE595A76_S74_L001_R1_001_statistics.txt.gz

467 B

STAR

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_SJ.out.tab

399.21 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_stats.txt

1.80 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam

47.76 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

5.07 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam.bai

2.28 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bw

1.77 MB

BBDuk (single-end)

LEE595A80_S79_L001_R1_001_preprocessed.fastq.gz

358.00 MB

fastqc

Directory

LEE595A80_S79_L001_R1_001_statistics.txt.gz

480 B

STAR

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam

4.18 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_SJ.out.tab

2.63 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam.bai

264 B

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.17 MB

STAR

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.98 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam

37.41 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

283.68 MB

STAR

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam.bai

264 B

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam

4.17 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.17 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_SJ.out.tab

2.63 kB

STAR

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

283.68 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.98 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam

37.41 MB

BBDuk (single-end)

LEE595A82_S81_L001_R1_001_preprocessed.fastq.gz

297.42 MB

fastqc

Directory

LEE595A82_S81_L001_R1_001_statistics.txt.gz

461 B

BBDuk (single-end)

LEE595A81_S80_L001_R1_001_preprocessed.fastq.gz

258.58 MB

fastqc

Directory

LEE595A81_S80_L001_R1_001_statistics.txt.gz

468 B

STAR

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.05 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam

329.93 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

74.69 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam.bai

2.86 MB

STAR

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

68.66 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.02 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam.bai

2.83 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam

316.62 MB

STAR

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

339.05 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam

13.39 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.40 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.40 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam

13.39 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

339.05 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

BBDuk (single-end)

fastqc

Directory

LEE595A86_S85_L001_R1_001_statistics.txt.gz

461 B

LEE595A86_S85_L001_R1_001_preprocessed.fastq.gz

242.73 MB

STAR

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam

311.89 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam.bai

2.91 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

74.55 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1000.45 kB

STAR

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_SJ.out.tab

4.47 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

342.40 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam

10.33 MB

STAR

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_SJ.out.tab

4.47 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam

10.33 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

342.40 MB

BBDuk (single-end)

LEE595A79_S77_L001_R1_001_statistics.txt.gz

472 B

fastqc

Directory

LEE595A79_S77_L001_R1_001_preprocessed.fastq.gz

371.75 MB

STAR

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.58 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam

17.83 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

286.71 MB

STAR

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

286.71 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam

17.83 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.58 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam

314.61 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

91.39 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam.bai

2.81 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_SJ.out.tab

997.66 kB

STAR

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam

346.77 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1021.04 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

95.88 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam.bai

2.89 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

FASTQ file (single-end)

LEE595A54_S50_L001_R1_001.fastq.gz

399.99 MB

fastqc

Directory

LEE595A54_S50_L001_R1_001_fastqc.zip

471.19 kB

stderr.txt

1.09 kB

STAR

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.02 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

348.58 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam

11.21 MB

STAR

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.02 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

348.58 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam

11.21 MB

STAR

LEE595A61_S58_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A61_S58_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.25 MB

LEE595A61_S58_L001_R1_001_preprocessed.bam.bai

3.55 MB

LEE595A61_S58_L001_R1_001_preprocessed.bam

409.31 MB

LEE595A61_S58_L001_R1_001_preprocessed_SJ.out.tab

1.15 MB

BBDuk (single-end)

fastqc

Directory

LEE595A83_S82_L001_R1_001_statistics.txt.gz

472 B

LEE595A83_S82_L001_R1_001_preprocessed.fastq.gz

315.41 MB

BBDuk (single-end)

LEE595A78_S76_L001_R1_001_preprocessed.fastq.gz

365.09 MB

fastqc

Directory

LEE595A78_S76_L001_R1_001_statistics.txt.gz

456 B

STAR

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_SJ.out.tab

891.57 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam

259.61 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam.bai

2.70 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.76 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A58_S54_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.43 MB

LEE595A58_S54_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A58_S54_L001_R1_001_preprocessed.bam

665.07 MB

LEE595A58_S54_L001_R1_001_preprocessed.bam.bai

3.39 MB

LEE595A58_S54_L001_R1_001_preprocessed_SJ.out.tab

1.53 MB

BBDuk (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_statistics.txt.gz

466 B

LEE595A84_S83_L001_R1_001_preprocessed.fastq.gz

255.10 MB

STAR

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

388.67 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam

11.01 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.25 kB

STAR

LEE595A53_S49_L001_R1_001_preprocessed.bam

415.47 MB

LEE595A53_S49_L001_R1_001_preprocessed.bam.bai

3.44 MB

LEE595A53_S49_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.02 MB

LEE595A53_S49_L001_R1_001_preprocessed_SJ.out.tab

1.28 MB

LEE595A53_S49_L001_R1_001_preprocessed_stats.txt

1.81 kB

STAR

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

272.18 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam

8.25 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.14 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.25 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

388.67 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam

11.01 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.14 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

272.18 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam

8.25 MB

STAR

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.02 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam

303.87 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam.bai

2.69 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

78.38 MB

STAR

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam

301.33 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1022.53 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam.bai

2.74 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

87.23 MB

STAR

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.66 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

315.38 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam

15.19 MB

STAR

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

108.39 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.31 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam

438.80 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam.bai

2.86 MB

STAR

LEE595A55_S51_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

4.90 MB

LEE595A55_S51_L001_R1_001_preprocessed.bam.bai

3.42 MB

LEE595A55_S51_L001_R1_001_preprocessed.bam

330.20 MB

LEE595A55_S51_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A55_S51_L001_R1_001_preprocessed_SJ.out.tab

1.12 MB

LEE595A55_S51_L001_R1_001_preprocessed.bw

6.88 MB

STAR

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam

13.62 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

321.85 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.07 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A62_S59_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.45 MB

LEE595A62_S59_L001_R1_001_preprocessed.bam.bai

3.40 MB

LEE595A62_S59_L001_R1_001_preprocessed.bam

457.83 MB

LEE595A62_S59_L001_R1_001_preprocessed_SJ.out.tab

1.18 MB

LEE595A62_S59_L001_R1_001_preprocessed_stats.txt

1.81 kB

STAR

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam

13.62 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

321.85 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.07 kB

STAR

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam

371.66 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

80.62 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam.bai

2.83 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.05 MB

STAR

LEE595A60_S57_L001_R1_001_preprocessed.bam

432.55 MB

LEE595A60_S57_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.40 MB

LEE595A60_S57_L001_R1_001_preprocessed_SJ.out.tab

1.22 MB

LEE595A60_S57_L001_R1_001_preprocessed.bam.bai

3.41 MB

LEE595A60_S57_L001_R1_001_preprocessed_stats.txt

1.81 kB

STAR

LEE595A59_S55_L001_R1_001_preprocessed.bam.bai

3.36 MB

LEE595A59_S55_L001_R1_001_preprocessed.bam

405.53 MB

LEE595A59_S55_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.44 MB

LEE595A59_S55_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A59_S55_L001_R1_001_preprocessed_SJ.out.tab

1.20 MB

STAR

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

455.05 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam

20.51 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.89 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

HTSeq-count (CPM)

LEE595A71_S69_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.62 kB

LEE595A71_S69_L001_R1_001_preprocessed_rc.tab.gz

114.13 kB

LEE595A71_S69_L001_R1_001_preprocessed_cpm.tab.gz

148.26 kB

LEE595A71_S69_L001_R1_001_preprocessed_expressions.txt.gz

295.99 kB

STAR

LEE595A66_S63_L001_R1_001_preprocessed.bam.bai

3.35 MB

LEE595A66_S63_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.75 MB

LEE595A66_S63_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A66_S63_L001_R1_001_preprocessed.bam

406.70 MB

LEE595A66_S63_L001_R1_001_preprocessed_SJ.out.tab

1.18 MB

STAR

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

455.05 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.89 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam

20.51 MB

STAR

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

105.15 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam

383.33 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam.bai

2.77 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.19 MB

STAR

LEE595A65_S62_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

13.34 MB

LEE595A65_S62_L001_R1_001_preprocessed.bam.bai

3.48 MB

LEE595A65_S62_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A65_S62_L001_R1_001_preprocessed_SJ.out.tab

1.37 MB

LEE595A65_S62_L001_R1_001_preprocessed.bam

565.37 MB

STAR

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam

29.80 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_SJ.out.tab

11.94 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

319.99 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

HTSeq-count (CPM)

LEE595A54_S50_L001_R1_001_preprocessed_rc.tab.gz

113.88 kB

LEE595A54_S50_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.41 kB

LEE595A54_S50_L001_R1_001_preprocessed_cpm.tab.gz

145.98 kB

LEE595A54_S50_L001_R1_001_preprocessed_expressions.txt.gz

293.48 kB

STAR

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

319.99 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam

29.81 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_SJ.out.tab

11.94 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam

395.43 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

142.12 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.20 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam.bai

2.79 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam

20.07 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.10 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

405.80 MB

FASTQ file (single-end)

stderr.txt

1.09 kB

fastqc

Directory

LEE595A55_S51_L001_R1_001.fastq.gz

275.26 MB

LEE595A55_S51_L001_R1_001_fastqc.zip

469.87 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A58_S54_L001_R1_001.fastq.gz

566.83 MB

LEE595A58_S54_L001_R1_001_fastqc.zip

473.05 kB

stderr.txt

1.09 kB

STAR

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

405.80 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.10 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam

20.06 MB

STAR

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

83.06 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam

321.95 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_SJ.out.tab

985.59 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam.bai

2.80 MB

STAR

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.44 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

439.25 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam

20.37 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.44 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

439.26 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam

20.37 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A59_S55_L001_R1_001.fastq.gz

337.68 MB

stderr.txt

1.09 kB

LEE595A59_S55_L001_R1_001_fastqc.zip

474.44 kB

STAR

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

291.73 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.28 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam

22.52 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

FASTQ file (single-end)

LEE595A72_S70_L001_R1_001.fastq.gz

320.28 MB

fastqc

Directory

LEE595A72_S70_L001_R1_001_fastqc.zip

469.46 kB

stderr.txt

1.09 kB

HTSeq-count (CPM)

LEE595A52_S48_L001_R1_001_preprocessed_rc.tab.gz

113.36 kB

LEE595A52_S48_L001_R1_001_preprocessed_cpm.tab.gz

143.64 kB

LEE595A52_S48_L001_R1_001_preprocessed_expressions.txt.gz

289.69 kB

LEE595A52_S48_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.90 kB

STAR

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam

22.52 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

291.73 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.28 kB

STAR

LEE595A69_S66_L001_R1_001_preprocessed.bam

472.78 MB

LEE595A69_S66_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A69_S66_L001_R1_001_preprocessed.bam.bai

3.72 MB

LEE595A69_S66_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.73 MB

LEE595A69_S66_L001_R1_001_preprocessed.bw

8.16 MB

LEE595A69_S66_L001_R1_001_preprocessed_SJ.out.tab

1.08 MB

STAR

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam

411.45 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

137.42 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.20 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam.bai

2.86 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.04 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam

385.75 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam.bai

2.84 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

74.36 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

GTF file

names

Directory

Rn_Ens100_Q_v3.10k_0.01score.extended_sorted.gtf.idx

1.33 MB

trackList.json

481 B

Rn_Ens100_Q_v3.10k_0.01score.extended_sorted.gtf

389.58 MB

Rn_Ens100_Q_v3.10k_0.01score.extended.gtf

389.58 MB

tracks

Directory

seq

Directory

STAR

LEE595A71_S69_L001_R1_001_preprocessed.bam.bai

3.81 MB

LEE595A71_S69_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A71_S69_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.96 MB

LEE595A71_S69_L001_R1_001_preprocessed.bam

511.65 MB

LEE595A71_S69_L001_R1_001_preprocessed_SJ.out.tab

1.04 MB

STAR

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.86 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam

23.37 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

439.26 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam

23.37 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.86 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

439.26 MB

STAR

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

301.21 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_SJ.out.tab

11.75 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam

31.94 MB

STAR

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam.bai

2.82 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam

385.54 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

75.32 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.08 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

STAR

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_SJ.out.tab

11.75 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

301.21 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam

31.95 MB

STAR

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

76.18 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam.bai

2.77 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_SJ.out.tab

971.05 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam

320.46 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

STAR

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam

24.92 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.04 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

340.43 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

340.44 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.04 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam

24.92 MB

STAR

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam.bai

2.80 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam

306.68 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_SJ.out.tab

923.69 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

75.16 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

STAR

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.72 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam

25.30 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

279.47 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

279.47 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam

25.31 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.72 kB

STAR

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam.bai

2.64 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam

479.86 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

101.28 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.08 MB

STAR

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

269.91 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.64 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam

22.62 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

269.91 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.64 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam

22.61 MB

STAR

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.13 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam

512.63 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam.bai

2.69 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

104.03 MB

STAR

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_SJ.out.tab

15.08 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

376.18 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam

53.06 MB

STAR

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

376.18 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam

53.05 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_SJ.out.tab

15.08 kB

STAR

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.06 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam.bai

2.71 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

86.28 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam

484.15 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

STAR

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

401.71 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

15.28 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam

52.23 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

401.70 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam

52.24 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

15.28 kB

STAR

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

362.30 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_SJ.out.tab

14.20 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam

52.45 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam.bai

2.66 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam

507.21 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

91.23 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.06 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

STAR

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam

52.45 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_SJ.out.tab

14.20 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

362.30 MB

STAR

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

374.20 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam

56.97 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_SJ.out.tab

14.56 kB

STAR

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam

56.96 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_SJ.out.tab

14.56 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

374.19 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam

454.49 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

95.86 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.04 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam.bai

2.66 MB

Subsample FASTQ (single-end)

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.fastq.gz

352.68 MB

fastqc

Directory

Samtools idxstats

idxstat_report.txt

20.30 kB

Samtools idxstats

idxstat_report.txt

20.32 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A77_S75_L001_R1_001_fastqc.zip

472.46 kB

LEE595A77_S75_L001_R1_001.fastq.gz

385.01 MB

STAR

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_SJ.out.tab

13.13 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam

47.84 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

358.91 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

STAR

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam

47.83 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_SJ.out.tab

13.13 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

358.91 MB

QoRTs QC

qorts_report.zip

5.76 MB

qorts_output

Directory

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.79 MB

QoRTs QC

qorts_report.zip

5.81 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.fastq.gz

306.43 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

QoRTs QC

qorts_report.zip

5.68 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.79 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.69 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.73 MB

qorts_output

Directory

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.93 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

QoRTs QC

qorts_report.zip

5.77 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.74 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.77 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.34 kB

QoRTs QC

qorts_report.zip

5.84 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.75 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.90 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.32 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.80 MB

QoRTs QC

qorts_report.zip

5.74 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.70 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.77 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.70 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.76 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.32 kB

Samtools idxstats

idxstat_report.txt

20.30 kB

QoRTs QC

qorts_report.zip

5.70 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.64 MB

qorts_output

Directory

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.71 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.fastq.gz

242.87 MB

STAR

LEE595A75_S73_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.75 MB

LEE595A75_S73_L001_R1_001_preprocessed.bam.bai

3.73 MB

LEE595A75_S73_L001_R1_001_preprocessed_SJ.out.tab

1.35 MB

LEE595A75_S73_L001_R1_001_preprocessed.bam

632.12 MB

LEE595A75_S73_L001_R1_001_preprocessed_stats.txt

1.81 kB

QoRTs QC

qorts_report.zip

5.85 MB

qorts_output

Directory

QoRTs QC

qorts_report.zip

5.78 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.28 kB

QoRTs QC

qorts_report.zip

5.83 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.33 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.71 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.84 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.74 MB

QoRTs QC

qorts_report.zip

5.76 MB

qorts_output

Directory

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.70 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.fastq.gz

310.34 MB

Samtools idxstats

idxstat_report.txt

20.29 kB

QoRTs QC

qorts_report.zip

5.67 MB

qorts_output

Directory

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.72 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.75 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

Subsample FASTQ (single-end)

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.fastq.gz

500.06 MB

fastqc

Directory

Samtools idxstats

idxstat_report.txt

20.35 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.72 MB

MultiQC

multiqc_report.html

1.24 MB

multiqc_data

Directory

Samtools idxstats

idxstat_report.txt

20.30 kB

QoRTs QC

qorts_report.zip

5.70 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.31 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

LEE595A82_S81_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.94 MB

LEE595A82_S81_L001_R1_001_preprocessed.bam.bai

3.71 MB

LEE595A82_S81_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A82_S81_L001_R1_001_preprocessed_SJ.out.tab

1.08 MB

LEE595A82_S81_L001_R1_001_preprocessed.bam

530.14 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Samtools idxstats

idxstat_report.txt

20.31 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.24 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.70 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

MultiQC

multiqc_report.html

1.24 MB

multiqc_data

Directory

Subsample FASTQ (single-end)

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.fastq.gz

359.14 MB

fastqc

Directory

STAR

LEE595A80_S79_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.85 MB

LEE595A80_S79_L001_R1_001_preprocessed.bam

562.05 MB

LEE595A80_S79_L001_R1_001_preprocessed.bam.bai

3.72 MB

LEE595A80_S79_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A80_S79_L001_R1_001_preprocessed_SJ.out.tab

1.24 MB

Samtools idxstats

idxstat_report.txt

20.33 kB

Samtools idxstats

idxstat_report.txt

20.30 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.fastq.gz

356.36 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

Subsample FASTQ (single-end)

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.fastq.gz

39.96 MB

fastqc

Directory

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.41 MB

Samtools idxstats

idxstat_report.txt

20.18 kB

Samtools idxstats

idxstat_report.txt

20.32 kB

Samtools idxstats

idxstat_report.txt

20.33 kB

QoRTs QC

qorts_report.zip

5.77 MB

qorts_output

Directory

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.fastq.gz

363.35 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

Samtools idxstats

idxstat_report.txt

20.31 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.fastq.gz

339.18 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.fastq.gz

481.34 MB

Samtools idxstats

idxstat_report.txt

20.35 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.fastq.gz

431.09 MB

Samtools idxstats

idxstat_report.txt

20.33 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.fastq.gz

354.99 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.76 MB

Samtools idxstats

idxstat_report.txt

20.33 kB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.fastq.gz

318.78 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

Subsample FASTQ (single-end)

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.fastq.gz

296.67 MB

fastqc

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Subsample FASTQ (single-end)

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.fastq.gz

435.69 MB

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.fastq.gz

460.91 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A51_S47_L001_R1_001_fastqc.zip

477.29 kB

stderr.txt

1.09 kB

LEE595A51_S47_L001_R1_001.fastq.gz

319.71 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001.fastq.gz

328.64 MB

LEE595A56_S52_L001_R1_001_fastqc.zip

467.68 kB

stderr.txt

1.09 kB

FASTQ file (single-end)

LEE595A69_S66_L001_R1_001.fastq.gz

402.63 MB

fastqc

Directory

LEE595A69_S66_L001_R1_001_fastqc.zip

470.82 kB

stderr.txt

1.09 kB

BBDuk (single-end)

LEE595A74_S72_L001_R1_001_statistics.txt.gz

467 B

fastqc

Directory

LEE595A74_S72_L001_R1_001_preprocessed.fastq.gz

257.67 MB

BBDuk (single-end)

LEE595A85_S84_L001_R1_001_preprocessed.fastq.gz

285.20 MB

fastqc

Directory

LEE595A85_S84_L001_R1_001_statistics.txt.gz

467 B

STAR

LEE595A64_S61_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.03 MB

LEE595A64_S61_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A64_S61_L001_R1_001_preprocessed.bam

506.05 MB

LEE595A64_S61_L001_R1_001_preprocessed.bam.bai

3.39 MB

LEE595A64_S61_L001_R1_001_preprocessed_SJ.out.tab

1.33 MB

STAR

LEE595A63_S60_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.13 MB

LEE595A63_S60_L001_R1_001_preprocessed.bam

382.31 MB

LEE595A63_S60_L001_R1_001_preprocessed.bam.bai

3.39 MB

LEE595A63_S60_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A63_S60_L001_R1_001_preprocessed.bw

6.86 MB

LEE595A63_S60_L001_R1_001_preprocessed_SJ.out.tab

1.13 MB

STAR

LEE595A68_S65_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

1.26 MB

LEE595A68_S65_L001_R1_001_preprocessed.bam.bai

2.63 MB

LEE595A68_S65_L001_R1_001_preprocessed.bam

61.13 MB

LEE595A68_S65_L001_R1_001_preprocessed.bw

2.00 MB

LEE595A68_S65_L001_R1_001_preprocessed_stats.txt

1.80 kB

LEE595A68_S65_L001_R1_001_preprocessed_SJ.out.tab

413.98 kB

STAR

LEE595A67_S64_L001_R1_001_preprocessed.bam.bai

3.36 MB

LEE595A67_S64_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.55 MB

LEE595A67_S64_L001_R1_001_preprocessed_SJ.out.tab

1.23 MB

LEE595A67_S64_L001_R1_001_preprocessed.bam

473.54 MB

LEE595A67_S64_L001_R1_001_preprocessed_stats.txt

1.81 kB

STAR

LEE595A70_S68_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.70 MB

LEE595A70_S68_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A70_S68_L001_R1_001_preprocessed.bam.bai

3.69 MB

LEE595A70_S68_L001_R1_001_preprocessed_SJ.out.tab

1.06 MB

LEE595A70_S68_L001_R1_001_preprocessed.bam

452.84 MB

STAR

LEE595A72_S70_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A72_S70_L001_R1_001_preprocessed.bam

369.32 MB

LEE595A72_S70_L001_R1_001_preprocessed.bw

5.99 MB

LEE595A72_S70_L001_R1_001_preprocessed.bam.bai

3.53 MB

LEE595A72_S70_L001_R1_001_preprocessed_SJ.out.tab

908.97 kB

LEE595A72_S70_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.02 MB

STAR

LEE595A73_S71_L001_R1_001_preprocessed.bam.bai

3.76 MB

LEE595A73_S71_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.77 MB

LEE595A73_S71_L001_R1_001_preprocessed.bam

468.58 MB

LEE595A73_S71_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A73_S71_L001_R1_001_preprocessed_SJ.out.tab

1.01 MB

LEE595A73_S71_L001_R1_001_preprocessed.bw

7.92 MB

STAR

LEE595A74_S72_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.45 MB

LEE595A74_S72_L001_R1_001_preprocessed.bam.bai

3.83 MB

LEE595A74_S72_L001_R1_001_preprocessed.bam

463.40 MB

LEE595A74_S72_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A74_S72_L001_R1_001_preprocessed_SJ.out.tab

1.05 MB

HTSeq-count (CPM)

LEE595A56_S52_L001_R1_001_preprocessed_cpm.tab.gz

140.26 kB

LEE595A56_S52_L001_R1_001_preprocessed_rc.tab.gz

112.41 kB

LEE595A56_S52_L001_R1_001_preprocessed_expressions.txt.gz

285.56 kB

LEE595A56_S52_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.95 kB

HTSeq-count (CPM)

LEE595A57_S53_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.08 kB

LEE595A57_S53_L001_R1_001_preprocessed_cpm.tab.gz

140.42 kB

LEE595A57_S53_L001_R1_001_preprocessed_expressions.txt.gz

285.78 kB

LEE595A57_S53_L001_R1_001_preprocessed_rc.tab.gz

112.56 kB

STAR

LEE595A77_S75_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.24 MB

LEE595A77_S75_L001_R1_001_preprocessed.bam.bai

3.69 MB

LEE595A77_S75_L001_R1_001_preprocessed.bam

441.48 MB

LEE595A77_S75_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A77_S75_L001_R1_001_preprocessed_SJ.out.tab

1.04 MB

STAR

LEE595A76_S74_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.09 MB

LEE595A76_S74_L001_R1_001_preprocessed.bam.bai

3.61 MB

LEE595A76_S74_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A76_S74_L001_R1_001_preprocessed.bam

441.40 MB

LEE595A76_S74_L001_R1_001_preprocessed_SJ.out.tab

1.06 MB

STAR

LEE595A81_S80_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.59 MB

LEE595A81_S80_L001_R1_001_preprocessed.bam

464.15 MB

LEE595A81_S80_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A81_S80_L001_R1_001_preprocessed_SJ.out.tab

1.00 MB

LEE595A81_S80_L001_R1_001_preprocessed.bam.bai

3.78 MB

HTSeq-count (CPM)

LEE595A53_S49_L001_R1_001_preprocessed_cpm.tab.gz

143.73 kB

LEE595A53_S49_L001_R1_001_preprocessed_expressions.txt.gz

289.87 kB

LEE595A53_S49_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.01 kB

LEE595A53_S49_L001_R1_001_preprocessed_rc.tab.gz

113.49 kB

HTSeq-count (CPM)

LEE595A58_S54_L001_R1_001_preprocessed_HTseq_rc.txt.gz

116.23 kB

LEE595A58_S54_L001_R1_001_preprocessed_rc.tab.gz

115.64 kB

LEE595A58_S54_L001_R1_001_preprocessed_expressions.txt.gz

303.50 kB

LEE595A58_S54_L001_R1_001_preprocessed_cpm.tab.gz

153.63 kB

STAR

LEE595A86_S85_L001_R1_001_preprocessed_SJ.out.tab

960.55 kB

LEE595A86_S85_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.44 MB

LEE595A86_S85_L001_R1_001_preprocessed.bam

438.41 MB

LEE595A86_S85_L001_R1_001_preprocessed.bam.bai

3.76 MB

LEE595A86_S85_L001_R1_001_preprocessed_stats.txt

1.81 kB

STAR

LEE595A79_S77_L001_R1_001_preprocessed_SJ.out.tab

1.26 MB

LEE595A79_S77_L001_R1_001_preprocessed.bam

622.34 MB

LEE595A79_S77_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A79_S77_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.63 MB

LEE595A79_S77_L001_R1_001_preprocessed.bam.bai

3.84 MB

STAR

LEE595A78_S76_L001_R1_001_preprocessed.bam.bai

3.81 MB

LEE595A78_S76_L001_R1_001_preprocessed.bam

604.94 MB

LEE595A78_S76_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.63 MB

LEE595A78_S76_L001_R1_001_preprocessed_SJ.out.tab

1.25 MB

LEE595A78_S76_L001_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

LEE595A55_S51_L001_R1_001_preprocessed_rc.tab.gz

112.11 kB

LEE595A55_S51_L001_R1_001_preprocessed_expressions.txt.gz

283.33 kB

LEE595A55_S51_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.69 kB

LEE595A55_S51_L001_R1_001_preprocessed_cpm.tab.gz

139.68 kB

HTSeq-count (CPM)

LEE595A62_S59_L001_R1_001_preprocessed_rc.tab.gz

113.79 kB

LEE595A62_S59_L001_R1_001_preprocessed_cpm.tab.gz

146.58 kB

LEE595A62_S59_L001_R1_001_preprocessed_expressions.txt.gz

293.84 kB

LEE595A62_S59_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.33 kB

STAR

LEE595A85_S84_L001_R1_001_preprocessed.bam.bai

3.71 MB

LEE595A85_S84_L001_R1_001_preprocessed.bam

538.58 MB

LEE595A85_S84_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A85_S84_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.72 MB

LEE595A85_S84_L001_R1_001_preprocessed_SJ.out.tab

1.06 MB

HTSeq-count (CPM)

LEE595A60_S57_L001_R1_001_preprocessed_rc.tab.gz

113.57 kB

LEE595A60_S57_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.04 kB

LEE595A60_S57_L001_R1_001_preprocessed_cpm.tab.gz

144.04 kB

LEE595A60_S57_L001_R1_001_preprocessed_expressions.txt.gz

291.07 kB

STAR

LEE595A83_S82_L001_R1_001_preprocessed.bam

531.83 MB

LEE595A83_S82_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.39 MB

LEE595A83_S82_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A83_S82_L001_R1_001_preprocessed_SJ.out.tab

1.09 MB

LEE595A83_S82_L001_R1_001_preprocessed.bam.bai

3.67 MB

HTSeq-count (CPM)

LEE595A61_S58_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.87 kB

LEE595A61_S58_L001_R1_001_preprocessed_rc.tab.gz

113.30 kB

LEE595A61_S58_L001_R1_001_preprocessed_expressions.txt.gz

289.80 kB

LEE595A61_S58_L001_R1_001_preprocessed_cpm.tab.gz

143.31 kB

STAR

LEE595A84_S83_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.44 MB

LEE595A84_S83_L001_R1_001_preprocessed.bam.bai

3.72 MB

LEE595A84_S83_L001_R1_001_preprocessed.bam

456.48 MB

LEE595A84_S83_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A84_S83_L001_R1_001_preprocessed_SJ.out.tab

1010.83 kB

HTSeq-count (CPM)

LEE595A59_S55_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.77 kB

LEE595A59_S55_L001_R1_001_preprocessed_rc.tab.gz

113.23 kB

LEE595A59_S55_L001_R1_001_preprocessed_cpm.tab.gz

143.43 kB

LEE595A59_S55_L001_R1_001_preprocessed_expressions.txt.gz

289.59 kB

HTSeq-count (CPM)

LEE595A63_S60_L001_R1_001_preprocessed_cpm.tab.gz

138.01 kB

LEE595A63_S60_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.90 kB

LEE595A63_S60_L001_R1_001_preprocessed_expressions.txt.gz

281.86 kB

LEE595A63_S60_L001_R1_001_preprocessed_rc.tab.gz

112.33 kB

HTSeq-count (CPM)

LEE595A73_S71_L001_R1_001_preprocessed_rc.tab.gz

113.60 kB

LEE595A73_S71_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.11 kB

LEE595A73_S71_L001_R1_001_preprocessed_cpm.tab.gz

145.05 kB

LEE595A73_S71_L001_R1_001_preprocessed_expressions.txt.gz

291.97 kB

HTSeq-count (CPM)

LEE595A75_S73_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.70 kB

LEE595A75_S73_L001_R1_001_preprocessed_expressions.txt.gz

300.72 kB

LEE595A75_S73_L001_R1_001_preprocessed_rc.tab.gz

115.16 kB

LEE595A75_S73_L001_R1_001_preprocessed_cpm.tab.gz

151.61 kB

HTSeq-count (CPM)

LEE595A74_S72_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.72 kB

LEE595A74_S72_L001_R1_001_preprocessed_rc.tab.gz

112.21 kB

LEE595A74_S72_L001_R1_001_preprocessed_expressions.txt.gz

284.81 kB

LEE595A74_S72_L001_R1_001_preprocessed_cpm.tab.gz

140.06 kB

HTSeq-count (CPM)

LEE595A77_S75_L001_R1_001_preprocessed_cpm.tab.gz

144.18 kB

LEE595A77_S75_L001_R1_001_preprocessed_rc.tab.gz

113.47 kB

LEE595A77_S75_L001_R1_001_preprocessed_expressions.txt.gz

291.06 kB

LEE595A77_S75_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.04 kB

HTSeq-count (CPM)

LEE595A76_S74_L001_R1_001_preprocessed_rc.tab.gz

113.43 kB

LEE595A76_S74_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.94 kB

LEE595A76_S74_L001_R1_001_preprocessed_cpm.tab.gz

144.90 kB

LEE595A76_S74_L001_R1_001_preprocessed_expressions.txt.gz

292.06 kB

HTSeq-count (CPM)

LEE595A78_S76_L001_R1_001_preprocessed_cpm.tab.gz

149.34 kB

LEE595A78_S76_L001_R1_001_preprocessed_rc.tab.gz

115.03 kB

LEE595A78_S76_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.56 kB

LEE595A78_S76_L001_R1_001_preprocessed_expressions.txt.gz

298.17 kB

HTSeq-count (CPM)

LEE595A80_S79_L001_R1_001_preprocessed_rc.tab.gz

114.69 kB

LEE595A80_S79_L001_R1_001_preprocessed_expressions.txt.gz

297.49 kB

LEE595A80_S79_L001_R1_001_preprocessed_cpm.tab.gz

148.88 kB

LEE595A80_S79_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.20 kB

HTSeq-count (CPM)

LEE595A79_S77_L001_R1_001_preprocessed_cpm.tab.gz

150.14 kB

LEE595A79_S77_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.32 kB

LEE595A79_S77_L001_R1_001_preprocessed_expressions.txt.gz

298.96 kB

LEE595A79_S77_L001_R1_001_preprocessed_rc.tab.gz

114.79 kB

HTSeq-count (CPM)

LEE595A82_S81_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.80 kB

LEE595A82_S81_L001_R1_001_preprocessed_rc.tab.gz

113.29 kB

LEE595A82_S81_L001_R1_001_preprocessed_expressions.txt.gz

288.87 kB

LEE595A82_S81_L001_R1_001_preprocessed_cpm.tab.gz

142.64 kB

HTSeq-count (CPM)

LEE595A85_S84_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.51 kB

LEE595A85_S84_L001_R1_001_preprocessed_rc.tab.gz

113.01 kB

LEE595A85_S84_L001_R1_001_preprocessed_cpm.tab.gz

141.31 kB

LEE595A85_S84_L001_R1_001_preprocessed_expressions.txt.gz

286.38 kB

HTSeq-count (CPM)

LEE595A81_S80_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.22 kB

LEE595A81_S80_L001_R1_001_preprocessed_cpm.tab.gz

141.24 kB

LEE595A81_S80_L001_R1_001_preprocessed_rc.tab.gz

112.67 kB

LEE595A81_S80_L001_R1_001_preprocessed_expressions.txt.gz

286.61 kB

HTSeq-count (CPM)

LEE595A83_S82_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.80 kB

LEE595A83_S82_L001_R1_001_preprocessed_rc.tab.gz

113.23 kB

LEE595A83_S82_L001_R1_001_preprocessed_cpm.tab.gz

143.39 kB

LEE595A83_S82_L001_R1_001_preprocessed_expressions.txt.gz

289.91 kB

HTSeq-count (CPM)

LEE595A86_S85_L001_R1_001_preprocessed_rc.tab.gz

112.13 kB

LEE595A86_S85_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.64 kB

LEE595A86_S85_L001_R1_001_preprocessed_expressions.txt.gz

283.42 kB

LEE595A86_S85_L001_R1_001_preprocessed_cpm.tab.gz

139.45 kB

HTSeq-count (CPM)

LEE595A84_S83_L001_R1_001_preprocessed_rc.tab.gz

112.40 kB

LEE595A84_S83_L001_R1_001_preprocessed_cpm.tab.gz

139.11 kB

LEE595A84_S83_L001_R1_001_preprocessed_expressions.txt.gz

283.31 kB

LEE595A84_S83_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.93 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A63_S60_L001_R1_001.fastq.gz

305.71 MB

LEE595A63_S60_L001_R1_001_fastqc.zip

485.50 kB

stderr.txt

1.09 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A86_S85_L001_R1_001_fastqc.zip

475.83 kB

LEE595A86_S85_L001_R1_001.fastq.gz

341.81 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A52_S48_L001_R1_001.fastq.gz

346.43 MB

stderr.txt

1.09 kB

LEE595A52_S48_L001_R1_001_fastqc.zip

471.78 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A53_S49_L001_R1_001_fastqc.zip

469.69 kB

LEE595A53_S49_L001_R1_001.fastq.gz

350.55 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_fastqc.zip

474.06 kB

LEE595A57_S53_L001_R1_001.fastq.gz

298.99 MB

stderr.txt

1.09 kB

FASTQ file (single-end)

LEE595A61_S58_L001_R1_001.fastq.gz

348.42 MB

stderr.txt

1.09 kB

fastqc

Directory

LEE595A61_S58_L001_R1_001_fastqc.zip

470.67 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001.fastq.gz

386.71 MB

stderr.txt

1.09 kB

LEE595A62_S59_L001_R1_001_fastqc.zip

470.62 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A70_S68_L001_R1_001.fastq.gz

401.68 MB

LEE595A70_S68_L001_R1_001_fastqc.zip

458.59 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A60_S57_L001_R1_001.fastq.gz

355.84 MB

stderr.txt

1.09 kB

LEE595A60_S57_L001_R1_001_fastqc.zip

477.05 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A65_S62_L001_R1_001.fastq.gz

453.38 MB

LEE595A65_S62_L001_R1_001_fastqc.zip

481.77 kB

stderr.txt

1.09 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A66_S63_L001_R1_001_fastqc.zip

479.31 kB

LEE595A66_S63_L001_R1_001.fastq.gz

333.56 MB

stderr.txt

1.09 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A68_S65_L001_R1_001.fastq.gz

45.88 MB

LEE595A68_S65_L001_R1_001_fastqc.zip

488.93 kB

FASTQ file (single-end)

LEE595A67_S64_L001_R1_001.fastq.gz

376.50 MB

fastqc

Directory

LEE595A67_S64_L001_R1_001_fastqc.zip

479.23 kB

stderr.txt

1.09 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A73_S71_L001_R1_001_fastqc.zip

467.93 kB

LEE595A73_S71_L001_R1_001.fastq.gz

410.59 MB

stderr.txt

1.09 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_fastqc.zip

463.47 kB

LEE595A71_S69_L001_R1_001.fastq.gz

455.05 MB

stderr.txt

1.09 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A74_S72_L001_R1_001_fastqc.zip

470.07 kB

LEE595A74_S72_L001_R1_001.fastq.gz

348.42 MB

stderr.txt

1.09 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001.fastq.gz

545.63 MB

LEE595A75_S73_L001_R1_001_fastqc.zip

473.58 kB

stderr.txt

1.09 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A76_S74_L001_R1_001.fastq.gz

380.47 MB

LEE595A76_S74_L001_R1_001_fastqc.zip

472.45 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A80_S79_L001_R1_001.fastq.gz

488.84 MB

stderr.txt

1.09 kB

LEE595A80_S79_L001_R1_001_fastqc.zip

470.30 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A79_S77_L001_R1_001.fastq.gz

531.51 MB

stderr.txt

1.09 kB

LEE595A79_S77_L001_R1_001_fastqc.zip

470.34 kB

FASTQ file (single-end)

stderr.txt

1.09 kB

fastqc

Directory

LEE595A78_S76_L001_R1_001.fastq.gz

529.54 MB

LEE595A78_S76_L001_R1_001_fastqc.zip

477.64 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001.fastq.gz

367.02 MB

LEE595A81_S80_L001_R1_001_fastqc.zip

474.23 kB

stderr.txt

1.09 kB

FASTQ file (single-end)

LEE595A83_S82_L001_R1_001.fastq.gz

426.10 MB

fastqc

Directory

LEE595A83_S82_L001_R1_001_fastqc.zip

478.67 kB

stderr.txt

1.09 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A85_S84_L001_R1_001.fastq.gz

391.23 MB

stderr.txt

1.09 kB

LEE595A85_S84_L001_R1_001_fastqc.zip

483.14 kB

HTSeq-count (CPM)

LEE595A51_S47_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.35 kB

LEE595A51_S47_L001_R1_001_preprocessed_rc.tab.gz

112.82 kB

LEE595A51_S47_L001_R1_001_preprocessed_expressions.txt.gz

286.42 kB

LEE595A51_S47_L001_R1_001_preprocessed_cpm.tab.gz

141.19 kB

BBDuk (single-end)

fastqc

Directory

LEE595A52_S48_L001_R1_001_statistics.txt.gz

445 B

LEE595A52_S48_L001_R1_001_preprocessed.fastq.gz

277.82 MB

BBDuk (single-end)

fastqc

Directory

LEE595A51_S47_L001_R1_001_statistics.txt.gz

455 B

LEE595A51_S47_L001_R1_001_preprocessed.fastq.gz

250.49 MB

HTSeq-count (CPM)

LEE595A68_S65_L001_R1_001_preprocessed_rc.tab.gz

103.42 kB

LEE595A68_S65_L001_R1_001_preprocessed_cpm.tab.gz

115.89 kB

LEE595A68_S65_L001_R1_001_preprocessed_HTseq_rc.txt.gz

104.22 kB

LEE595A68_S65_L001_R1_001_preprocessed_expressions.txt.gz

249.25 kB

BBDuk (single-end)

fastqc

Directory

LEE595A54_S50_L001_R1_001_preprocessed.fastq.gz

320.40 MB

LEE595A54_S50_L001_R1_001_statistics.txt.gz

473 B

HTSeq-count (CPM)

LEE595A64_S61_L001_R1_001_preprocessed_cpm.tab.gz

143.88 kB

LEE595A64_S61_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.29 kB

LEE595A64_S61_L001_R1_001_preprocessed_rc.tab.gz

113.71 kB

LEE595A64_S61_L001_R1_001_preprocessed_expressions.txt.gz

290.42 kB

BBDuk (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_preprocessed.fastq.gz

238.97 MB

LEE595A57_S53_L001_R1_001_statistics.txt.gz

456 B

BBDuk (single-end)

LEE595A58_S54_L001_R1_001_statistics.txt.gz

473 B

fastqc

Directory

LEE595A58_S54_L001_R1_001_preprocessed.fastq.gz

459.70 MB

BBDuk (single-end)

fastqc

Directory

LEE595A53_S49_L001_R1_001_preprocessed.fastq.gz

279.21 MB

LEE595A53_S49_L001_R1_001_statistics.txt.gz

456 B

BBDuk (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001_preprocessed.fastq.gz

305.56 MB

LEE595A62_S59_L001_R1_001_statistics.txt.gz

474 B

BBDuk (single-end)

fastqc

Directory

LEE595A60_S57_L001_R1_001_preprocessed.fastq.gz

273.46 MB

LEE595A60_S57_L001_R1_001_statistics.txt.gz

476 B

BBDuk (single-end)

fastqc

Directory

LEE595A59_S55_L001_R1_001_preprocessed.fastq.gz

264.45 MB

LEE595A59_S55_L001_R1_001_statistics.txt.gz

459 B

BBDuk (single-end)

fastqc

Directory

LEE595A61_S58_L001_R1_001_statistics.txt.gz

472 B

LEE595A61_S58_L001_R1_001_preprocessed.fastq.gz

265.03 MB

BBDuk (single-end)

LEE595A65_S62_L001_R1_001_preprocessed.fastq.gz

348.49 MB

LEE595A65_S62_L001_R1_001_statistics.txt.gz

453 B

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

LEE595A63_S60_L001_R1_001_preprocessed.fastq.gz

237.88 MB

LEE595A63_S60_L001_R1_001_statistics.txt.gz

447 B

STAR

LEE595A52_S48_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.52 MB

LEE595A52_S48_L001_R1_001_preprocessed.bam

411.86 MB

LEE595A52_S48_L001_R1_001_preprocessed.bam.bai

3.44 MB

LEE595A52_S48_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A52_S48_L001_R1_001_preprocessed_SJ.out.tab

1.27 MB

BBDuk (single-end)

LEE595A66_S63_L001_R1_001_preprocessed.fastq.gz

263.75 MB

fastqc

Directory

LEE595A66_S63_L001_R1_001_statistics.txt.gz

464 B

STAR

LEE595A54_S50_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.46 MB

LEE595A54_S50_L001_R1_001_preprocessed.bam

480.96 MB

LEE595A54_S50_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A54_S50_L001_R1_001_preprocessed.bam.bai

3.35 MB

LEE595A54_S50_L001_R1_001_preprocessed_SJ.out.tab

1.34 MB

BBDuk (single-end)

fastqc

Directory

LEE595A64_S61_L001_R1_001_preprocessed.fastq.gz

325.64 MB

LEE595A64_S61_L001_R1_001_statistics.txt.gz

461 B

BBDuk (single-end)

LEE595A68_S65_L001_R1_001_statistics.txt.gz

384 B

fastqc

Directory

LEE595A68_S65_L001_R1_001_preprocessed.fastq.gz

36.11 MB

STAR

LEE595A51_S47_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.48 MB

LEE595A51_S47_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A51_S47_L001_R1_001_preprocessed.bam

385.25 MB

LEE595A51_S47_L001_R1_001_preprocessed.bam.bai

3.49 MB

LEE595A51_S47_L001_R1_001_preprocessed_SJ.out.tab

1.21 MB

BBDuk (single-end)

LEE595A67_S64_L001_R1_001_preprocessed.fastq.gz

300.06 MB

fastqc

Directory

LEE595A67_S64_L001_R1_001_statistics.txt.gz

455 B

BBDuk (single-end)

fastqc

Directory

LEE595A69_S66_L001_R1_001_preprocessed.fastq.gz

303.38 MB

LEE595A69_S66_L001_R1_001_statistics.txt.gz

479 B

BBDuk (single-end)

fastqc

Directory

LEE595A70_S68_L001_R1_001_preprocessed.fastq.gz

308.70 MB

LEE595A70_S68_L001_R1_001_statistics.txt.gz

457 B

5w_WT_6_synaptosome

FASTQ file (single-end)

MOD970A3_S47_L004_R1_001.fastq.gz

536.32 MB

fastqc

Directory

MOD970A3_S47_L004_R1_001_fastqc.zip

485.39 kB

stderr.txt

1.13 kB

BBDuk (single-end)

fastqc

Directory

MOD970A3_S47_L004_R1_001_preprocessed.fastq.gz

390.61 MB

MOD970A3_S47_L004_R1_001_statistics.txt.gz

462 B

HTSeq-count (CPM)

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

299.60 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_rc.tab.gz

114.51 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.11 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

148.66 kB

BBDuk (single-end)

fastqc

Directory

MOD970A3_S47_L004_R1_001_statistics.txt.gz

462 B

MOD970A3_S47_L004_R1_001_preprocessed.fastq.gz

390.60 MB

STAR

MOD970A3_S47_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.28 MB

MOD970A3_S47_L004_R1_001_preprocessed_SJ.out.tab

1.15 MB

MOD970A3_S47_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD970A3_S47_L004_R1_001_preprocessed.bam.bai

3.53 MB

MOD970A3_S47_L004_R1_001_preprocessed.bam

601.81 MB

HTSeq-count (CPM)

MOD970A3_S47_L004_R1_001_preprocessed_expressions.txt.gz

295.20 kB

MOD970A3_S47_L004_R1_001_preprocessed_HTseq_rc.txt.gz

114.00 kB

MOD970A3_S47_L004_R1_001_preprocessed_rc.tab.gz

113.53 kB

MOD970A3_S47_L004_R1_001_preprocessed_cpm.tab.gz

145.32 kB

BBDuk (single-end)

fastqc

Directory

MOD970A3_S47_L004_R1_001_statistics.txt.gz

135 B

MOD970A3_S47_L004_R1_001_preprocessed.fastq.gz

461.67 MB

BBDuk (single-end)

MOD970A3_S47_L004_R1_001_preprocessed.fastq.gz

461.56 MB

fastqc

Directory

MOD970A3_S47_L004_R1_001_statistics.txt.gz

135 B

HTSeq-count (CPM)

MOD970A3_S47_L004_R1_001_preprocessed_cpm.tab.gz

152.49 kB

MOD970A3_S47_L004_R1_001_preprocessed_rc.tab.gz

115.46 kB

MOD970A3_S47_L004_R1_001_preprocessed_expressions.txt.gz

304.94 kB

MOD970A3_S47_L004_R1_001_preprocessed_HTseq_rc.txt.gz

116.08 kB

Salmon Quant

salmon_output

Directory

MOD970A3_S47_L004_R1_001_preprocessed_expressions.txt.gz

240.35 kB

MOD970A3_S47_L004_R1_001_preprocessed_tpm.txt.gz

132.65 kB

MOD970A3_S47_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

207.61 kB

MOD970A3_S47_L004_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

STAR

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.13 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam

512.63 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam.bai

2.69 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

104.03 MB

STAR

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

401.71 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

15.28 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam

52.23 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

401.70 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.bam

52.24 MB

MOD970A3_S47_L004_R1_001_preprocessed_downsampled_SJ.out.tab

15.28 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.75 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD970A3_S47_L004_R1_001_preprocessed_downsampled.fastq.gz

460.91 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

5w_Stau2KD_1_synaptosome

FASTQ file (single-end)

MOD970A4_S48_L004_R1_001.fastq.gz

488.34 MB

MOD970A4_S48_L004_R1_001_fastqc.zip

481.22 kB

fastqc

Directory

stderr.txt

1.13 kB

BBDuk (single-end)

fastqc

Directory

MOD970A4_S48_L004_R1_001_preprocessed.fastq.gz

364.47 MB

MOD970A4_S48_L004_R1_001_statistics.txt.gz

458 B

HTSeq-count (CPM)

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

147.60 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_rc.tab.gz

114.31 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.89 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

297.91 kB

BBDuk (single-end)

MOD970A4_S48_L004_R1_001_preprocessed.fastq.gz

364.44 MB

fastqc

Directory

MOD970A4_S48_L004_R1_001_statistics.txt.gz

458 B

STAR

MOD970A4_S48_L004_R1_001_preprocessed.bam

564.68 MB

MOD970A4_S48_L004_R1_001_preprocessed_SJ.out.tab

1.07 MB

MOD970A4_S48_L004_R1_001_preprocessed.bam.bai

3.48 MB

MOD970A4_S48_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD970A4_S48_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.75 MB

HTSeq-count (CPM)

MOD970A4_S48_L004_R1_001_preprocessed_rc.tab.gz

113.00 kB

MOD970A4_S48_L004_R1_001_preprocessed_cpm.tab.gz

143.66 kB

MOD970A4_S48_L004_R1_001_preprocessed_expressions.txt.gz

292.17 kB

MOD970A4_S48_L004_R1_001_preprocessed_HTseq_rc.txt.gz

113.52 kB

BBDuk (single-end)

fastqc

Directory

MOD970A4_S48_L004_R1_001_preprocessed.fastq.gz

421.68 MB

MOD970A4_S48_L004_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

MOD970A4_S48_L004_R1_001_statistics.txt.gz

134 B

fastqc

Directory

MOD970A4_S48_L004_R1_001_preprocessed.fastq.gz

421.66 MB

HTSeq-count (CPM)

MOD970A4_S48_L004_R1_001_preprocessed_cpm.tab.gz

150.22 kB

MOD970A4_S48_L004_R1_001_preprocessed_rc.tab.gz

114.89 kB

MOD970A4_S48_L004_R1_001_preprocessed_HTseq_rc.txt.gz

115.49 kB

MOD970A4_S48_L004_R1_001_preprocessed_expressions.txt.gz

301.86 kB

Salmon Quant

salmon_output

Directory

MOD970A4_S48_L004_R1_001_preprocessed.sf

1.48 MB

MOD970A4_S48_L004_R1_001_preprocessed_tpm.txt.gz

132.46 kB

MOD970A4_S48_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

207.39 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

MOD970A4_S48_L004_R1_001_preprocessed_expressions.txt.gz

240.04 kB

Subsample FASTQ (single-end)

fastqc

Directory

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.fastq.gz

420.97 MB

STAR

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.06 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam.bai

2.71 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

86.28 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam

484.15 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

STAR

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

362.30 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_SJ.out.tab

14.20 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam

52.45 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam

52.45 MB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_SJ.out.tab

14.20 kB

MOD970A4_S48_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A4_S48_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

362.30 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.72 MB

MultiQC

multiqc_report.html

1.24 MB

multiqc_data

Directory

5w_WT_4_synaptosome

FASTQ file (single-end)

MOD970A2_S36_L004_R1_001.fastq.gz

511.20 MB

MOD970A2_S36_L004_R1_001_fastqc.zip

490.14 kB

fastqc

Directory

stderr.txt

1.13 kB

BBDuk (single-end)

fastqc

Directory

MOD970A2_S36_L004_R1_001_preprocessed.fastq.gz

376.60 MB

MOD970A2_S36_L004_R1_001_statistics.txt.gz

456 B

HTSeq-count (CPM)

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

147.31 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_rc.tab.gz

114.44 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

297.59 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.03 kB

BBDuk (single-end)

fastqc

Directory

MOD970A2_S36_L004_R1_001_preprocessed.fastq.gz

376.61 MB

MOD970A2_S36_L004_R1_001_statistics.txt.gz

456 B

STAR

MOD970A2_S36_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD970A2_S36_L004_R1_001_preprocessed_SJ.out.tab

1.08 MB

MOD970A2_S36_L004_R1_001_preprocessed.bam.bai

3.44 MB

MOD970A2_S36_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.59 MB

MOD970A2_S36_L004_R1_001_preprocessed.bam

595.25 MB

HTSeq-count (CPM)

MOD970A2_S36_L004_R1_001_preprocessed_rc.tab.gz

113.31 kB

MOD970A2_S36_L004_R1_001_preprocessed_expressions.txt.gz

293.99 kB

MOD970A2_S36_L004_R1_001_preprocessed_HTseq_rc.txt.gz

113.81 kB

MOD970A2_S36_L004_R1_001_preprocessed_cpm.tab.gz

144.38 kB

BBDuk (single-end)

fastqc

Directory

MOD970A2_S36_L004_R1_001_statistics.txt.gz

134 B

MOD970A2_S36_L004_R1_001_preprocessed.fastq.gz

438.28 MB

BBDuk (single-end)

MOD970A2_S36_L004_R1_001_preprocessed.fastq.gz

438.30 MB

fastqc

Directory

MOD970A2_S36_L004_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

MOD970A2_S36_L004_R1_001_preprocessed_cpm.tab.gz

151.19 kB

MOD970A2_S36_L004_R1_001_preprocessed_rc.tab.gz

115.11 kB

MOD970A2_S36_L004_R1_001_preprocessed_expressions.txt.gz

302.97 kB

MOD970A2_S36_L004_R1_001_preprocessed_HTseq_rc.txt.gz

115.73 kB

Salmon Quant

MOD970A2_S36_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

207.39 kB

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

MOD970A2_S36_L004_R1_001_preprocessed_tpm.txt.gz

132.38 kB

MOD970A2_S36_L004_R1_001_preprocessed_expressions.txt.gz

239.92 kB

MOD970A2_S36_L004_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.fastq.gz

437.60 MB

STAR

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam.bai

2.66 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam

507.21 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

91.23 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.06 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

STAR

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

374.20 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam

56.97 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_SJ.out.tab

14.56 kB

STAR

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam

56.96 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_SJ.out.tab

14.56 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

374.19 MB

MOD970A2_S36_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

QoRTs QC

qorts_report.zip

5.70 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

5w_WT_2_synaptosome

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.13 kB

MOD970A1_S25_L004_R1_001.fastq.gz

505.36 MB

MOD970A1_S25_L004_R1_001_fastqc.zip

485.31 kB

BBDuk (single-end)

MOD970A1_S25_L004_R1_001_preprocessed.fastq.gz

370.20 MB

fastqc

Directory

MOD970A1_S25_L004_R1_001_statistics.txt.gz

459 B

HTSeq-count (CPM)

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

296.77 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

146.06 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.82 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_rc.tab.gz

114.23 kB

BBDuk (single-end)

MOD970A1_S25_L004_R1_001_statistics.txt.gz

459 B

fastqc

Directory

MOD970A1_S25_L004_R1_001_preprocessed.fastq.gz

370.21 MB

STAR

MOD970A1_S25_L004_R1_001_preprocessed_stats.txt

1.81 kB

MOD970A1_S25_L004_R1_001_preprocessed.bam

579.69 MB

MOD970A1_S25_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.58 MB

MOD970A1_S25_L004_R1_001_preprocessed.bam.bai

3.47 MB

MOD970A1_S25_L004_R1_001_preprocessed_SJ.out.tab

1.09 MB

HTSeq-count (CPM)

MOD970A1_S25_L004_R1_001_preprocessed_HTseq_rc.txt.gz

113.68 kB

MOD970A1_S25_L004_R1_001_preprocessed_expressions.txt.gz

293.36 kB

MOD970A1_S25_L004_R1_001_preprocessed_rc.tab.gz

113.17 kB

MOD970A1_S25_L004_R1_001_preprocessed_cpm.tab.gz

144.32 kB

BBDuk (single-end)

fastqc

Directory

MOD970A1_S25_L004_R1_001_statistics.txt.gz

134 B

MOD970A1_S25_L004_R1_001_preprocessed.fastq.gz

436.32 MB

BBDuk (single-end)

MOD970A1_S25_L004_R1_001_statistics.txt.gz

134 B

fastqc

Directory

MOD970A1_S25_L004_R1_001_preprocessed.fastq.gz

436.34 MB

HTSeq-count (CPM)

MOD970A1_S25_L004_R1_001_preprocessed_expressions.txt.gz

302.40 kB

MOD970A1_S25_L004_R1_001_preprocessed_rc.tab.gz

115.00 kB

MOD970A1_S25_L004_R1_001_preprocessed_cpm.tab.gz

150.95 kB

MOD970A1_S25_L004_R1_001_preprocessed_HTseq_rc.txt.gz

115.58 kB

Salmon Quant

MOD970A1_S25_L004_R1_001_preprocessed_tpm.txt.gz

132.35 kB

salmon_output

Directory

MOD970A1_S25_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

207.22 kB

MOD970A1_S25_L004_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

MOD970A1_S25_L004_R1_001_preprocessed_expressions.txt.gz

239.84 kB

STAR

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam.bai

2.64 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam

479.86 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

101.28 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.08 MB

STAR

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_SJ.out.tab

15.08 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

376.18 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam

53.06 MB

STAR

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

376.18 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.bam

53.05 MB

MOD970A1_S25_L004_R1_001_preprocessed_downsampled_SJ.out.tab

15.08 kB

Samtools idxstats

idxstat_report.txt

20.29 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.72 MB

Subsample FASTQ (single-end)

MOD970A1_S25_L004_R1_001_preprocessed_downsampled.fastq.gz

435.69 MB

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

5w_Stau2KD_5_synaptosome

FASTQ file (single-end)

MOD970A5_S49_L004_R1_001.fastq.gz

479.37 MB

MOD970A5_S49_L004_R1_001_fastqc.zip

490.98 kB

fastqc

Directory

stderr.txt

1.13 kB

BBDuk (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_preprocessed.fastq.gz

351.00 MB

MOD970A5_S49_L004_R1_001_statistics.txt.gz

469 B

HTSeq-count (CPM)

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_expressions.txt.gz

295.65 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.47 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_rc.tab.gz

113.87 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_cpm.tab.gz

146.11 kB

BBDuk (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_statistics.txt.gz

469 B

MOD970A5_S49_L004_R1_001_preprocessed.fastq.gz

350.99 MB

STAR

MOD970A5_S49_L004_R1_001_preprocessed.bam

544.00 MB

MOD970A5_S49_L004_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.75 MB

MOD970A5_S49_L004_R1_001_preprocessed_SJ.out.tab

1.06 MB

MOD970A5_S49_L004_R1_001_preprocessed.bam.bai

3.49 MB

MOD970A5_S49_L004_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

MOD970A5_S49_L004_R1_001_preprocessed_expressions.txt.gz

291.19 kB

MOD970A5_S49_L004_R1_001_preprocessed_cpm.tab.gz

142.41 kB

MOD970A5_S49_L004_R1_001_preprocessed_rc.tab.gz

112.89 kB

MOD970A5_S49_L004_R1_001_preprocessed_HTseq_rc.txt.gz

113.44 kB

BBDuk (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_preprocessed.fastq.gz

413.76 MB

MOD970A5_S49_L004_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_preprocessed.fastq.gz

413.78 MB

MOD970A5_S49_L004_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

MOD970A5_S49_L004_R1_001_preprocessed_rc.tab.gz

114.72 kB

MOD970A5_S49_L004_R1_001_preprocessed_cpm.tab.gz

150.09 kB

MOD970A5_S49_L004_R1_001_preprocessed_HTseq_rc.txt.gz

115.31 kB

MOD970A5_S49_L004_R1_001_preprocessed_expressions.txt.gz

301.41 kB

Salmon Quant

salmon_output

Directory

MOD970A5_S49_L004_R1_001_preprocessed_transcripts_tpm.txt.gz

206.48 kB

MOD970A5_S49_L004_R1_001_preprocessed_tpm.txt.gz

132.02 kB

MOD970A5_S49_L004_R1_001_preprocessed.sf

1.48 MB

MOD970A5_S49_L004_R1_001_preprocessed_expressions.txt.gz

239.65 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Subsample FASTQ (single-end)

fastqc

Directory

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.fastq.gz

413.14 MB

STAR

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam

454.49 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

95.86 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_SJ.out.tab

1.04 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam.bai

2.66 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

STAR

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_SJ.out.tab

13.13 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam

47.84 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

358.91 MB

STAR

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam

47.83 MB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_SJ.out.tab

13.13 kB

MOD970A5_S49_L004_R1_001_preprocessed_downsampled.bam.bai

336 B

MOD970A5_S49_L004_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

358.91 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.70 MB

MultiQC

multiqc_report.html

1.24 MB

multiqc_data

Directory

P0_Stau2KD_2b

HTSeq-count (CPM)

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.41 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

296.82 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.06 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.26 kB

BBDuk (single-end)

fastqc

Directory

LEE595A73_S71_L001_R1_001_preprocessed.fastq.gz

363.91 MB

LEE595A73_S71_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A73_S71_L001_R1_001_statistics.txt.gz

135 B

LEE595A73_S71_L001_R1_001_preprocessed.fastq.gz

363.93 MB

Salmon Quant

LEE595A73_S71_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

206.71 kB

LEE595A73_S71_L001_R1_001_preprocessed_expressions.txt.gz

239.50 kB

salmon_output

Directory

LEE595A73_S71_L001_R1_001_preprocessed_tpm.txt.gz

132.17 kB

LEE595A73_S71_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

BBDuk (single-end)

LEE595A73_S71_L001_R1_001_statistics.txt.gz

461 B

fastqc

Directory

LEE595A73_S71_L001_R1_001_preprocessed.fastq.gz

299.91 MB

STAR

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam

314.61 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

91.39 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam.bai

2.81 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_SJ.out.tab

997.66 kB

STAR

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.02 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

348.58 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam

11.21 MB

STAR

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.02 kB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A73_S71_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

348.58 MB

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.bam

11.21 MB

QoRTs QC

qorts_report.zip

5.76 MB

qorts_output

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A73_S71_L001_R1_001_preprocessed_downsampled.fastq.gz

363.35 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

STAR

LEE595A73_S71_L001_R1_001_preprocessed.bam.bai

3.76 MB

LEE595A73_S71_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.77 MB

LEE595A73_S71_L001_R1_001_preprocessed.bam

468.58 MB

LEE595A73_S71_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A73_S71_L001_R1_001_preprocessed_SJ.out.tab

1.01 MB

LEE595A73_S71_L001_R1_001_preprocessed.bw

7.92 MB

HTSeq-count (CPM)

LEE595A73_S71_L001_R1_001_preprocessed_rc.tab.gz

113.60 kB

LEE595A73_S71_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.11 kB

LEE595A73_S71_L001_R1_001_preprocessed_cpm.tab.gz

145.05 kB

LEE595A73_S71_L001_R1_001_preprocessed_expressions.txt.gz

291.97 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A73_S71_L001_R1_001_fastqc.zip

467.93 kB

LEE595A73_S71_L001_R1_001.fastq.gz

410.59 MB

stderr.txt

1.09 kB

P0_Stau2KD_3b

HTSeq-count (CPM)

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

290.00 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

142.58 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_rc.tab.gz

112.97 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.53 kB

BBDuk (single-end)

LEE595A74_S72_L001_R1_001_preprocessed.fastq.gz

308.60 MB

fastqc

Directory

LEE595A74_S72_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A74_S72_L001_R1_001_statistics.txt.gz

134 B

LEE595A74_S72_L001_R1_001_preprocessed.fastq.gz

308.60 MB

Salmon Quant

salmon_output

Directory

LEE595A74_S72_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

205.79 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A74_S72_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A74_S72_L001_R1_001_preprocessed_expressions.txt.gz

238.41 kB

LEE595A74_S72_L001_R1_001_preprocessed_tpm.txt.gz

131.11 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.fastq.gz

308.07 MB

STAR

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam

311.89 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam.bai

2.91 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

74.55 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1000.45 kB

STAR

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.58 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam

17.83 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

286.71 MB

STAR

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

286.71 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled.bam

17.83 MB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.58 kB

LEE595A74_S72_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

QoRTs QC

qorts_report.zip

5.70 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

BBDuk (single-end)

LEE595A74_S72_L001_R1_001_statistics.txt.gz

467 B

fastqc

Directory

LEE595A74_S72_L001_R1_001_preprocessed.fastq.gz

257.67 MB

STAR

LEE595A74_S72_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.45 MB

LEE595A74_S72_L001_R1_001_preprocessed.bam.bai

3.83 MB

LEE595A74_S72_L001_R1_001_preprocessed.bam

463.40 MB

LEE595A74_S72_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A74_S72_L001_R1_001_preprocessed_SJ.out.tab

1.05 MB

HTSeq-count (CPM)

LEE595A74_S72_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.72 kB

LEE595A74_S72_L001_R1_001_preprocessed_rc.tab.gz

112.21 kB

LEE595A74_S72_L001_R1_001_preprocessed_expressions.txt.gz

284.81 kB

LEE595A74_S72_L001_R1_001_preprocessed_cpm.tab.gz

140.06 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A74_S72_L001_R1_001_fastqc.zip

470.07 kB

LEE595A74_S72_L001_R1_001.fastq.gz

348.42 MB

stderr.txt

1.09 kB

P0_WT_1a

HTSeq-count (CPM)

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

293.17 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.35 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.71 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

144.64 kB

BBDuk (single-end)

fastqc

Directory

LEE595A51_S47_L001_R1_001_preprocessed.fastq.gz

282.91 MB

LEE595A51_S47_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

LEE595A51_S47_L001_R1_001_statistics.txt.gz

134 B

LEE595A51_S47_L001_R1_001_preprocessed.fastq.gz

282.91 MB

fastqc

Directory

Salmon Quant

LEE595A51_S47_L001_R1_001_preprocessed_expressions.txt.gz

240.94 kB

LEE595A51_S47_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.34 kB

salmon_output

Directory

LEE595A51_S47_L001_R1_001_preprocessed_tpm.txt.gz

133.21 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A51_S47_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.fastq.gz

282.38 MB

fastqc

Directory

STAR

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.18 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam

281.45 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

45.28 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam.bai

2.78 MB

STAR

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.29 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

258.70 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam

19.31 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.29 kB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam

19.31 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

258.70 MB

LEE595A51_S47_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

Samtools idxstats

idxstat_report.txt

20.30 kB

QoRTs QC

qorts_report.zip

5.76 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A51_S47_L001_R1_001_fastqc.zip

477.29 kB

stderr.txt

1.09 kB

LEE595A51_S47_L001_R1_001.fastq.gz

319.71 MB

HTSeq-count (CPM)

LEE595A51_S47_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.35 kB

LEE595A51_S47_L001_R1_001_preprocessed_rc.tab.gz

112.82 kB

LEE595A51_S47_L001_R1_001_preprocessed_expressions.txt.gz

286.42 kB

LEE595A51_S47_L001_R1_001_preprocessed_cpm.tab.gz

141.19 kB

BBDuk (single-end)

fastqc

Directory

LEE595A51_S47_L001_R1_001_statistics.txt.gz

455 B

LEE595A51_S47_L001_R1_001_preprocessed.fastq.gz

250.49 MB

STAR

LEE595A51_S47_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.48 MB

LEE595A51_S47_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A51_S47_L001_R1_001_preprocessed.bam

385.25 MB

LEE595A51_S47_L001_R1_001_preprocessed.bam.bai

3.49 MB

LEE595A51_S47_L001_R1_001_preprocessed_SJ.out.tab

1.21 MB

P0_WT_2a

HTSeq-count (CPM)

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.03 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.37 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.09 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

297.77 kB

BBDuk (single-end)

LEE595A52_S48_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A52_S48_L001_R1_001_preprocessed.fastq.gz

307.01 MB

BBDuk (single-end)

fastqc

Directory

LEE595A52_S48_L001_R1_001_preprocessed.fastq.gz

307.09 MB

LEE595A52_S48_L001_R1_001_statistics.txt.gz

135 B

Salmon Quant

salmon_output

Directory

LEE595A52_S48_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A52_S48_L001_R1_001_preprocessed_expressions.txt.gz

241.60 kB

LEE595A52_S48_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.37 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A52_S48_L001_R1_001_preprocessed_tpm.txt.gz

134.05 kB

STAR

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam

308.54 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam.bai

2.79 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.24 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

38.96 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam

20.34 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

281.13 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.01 kB

STAR

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam

20.35 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.01 kB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

281.13 MB

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A52_S48_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

HTSeq-count (CPM)

LEE595A52_S48_L001_R1_001_preprocessed_rc.tab.gz

113.36 kB

LEE595A52_S48_L001_R1_001_preprocessed_cpm.tab.gz

143.64 kB

LEE595A52_S48_L001_R1_001_preprocessed_expressions.txt.gz

289.69 kB

LEE595A52_S48_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.90 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.79 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A52_S48_L001_R1_001_preprocessed_downsampled.fastq.gz

306.43 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A52_S48_L001_R1_001.fastq.gz

346.43 MB

stderr.txt

1.09 kB

LEE595A52_S48_L001_R1_001_fastqc.zip

471.78 kB

BBDuk (single-end)

fastqc

Directory

LEE595A52_S48_L001_R1_001_statistics.txt.gz

445 B

LEE595A52_S48_L001_R1_001_preprocessed.fastq.gz

277.82 MB

STAR

LEE595A52_S48_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.52 MB

LEE595A52_S48_L001_R1_001_preprocessed.bam

411.86 MB

LEE595A52_S48_L001_R1_001_preprocessed.bam.bai

3.44 MB

LEE595A52_S48_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A52_S48_L001_R1_001_preprocessed_SJ.out.tab

1.27 MB

P35_Stau2KD_1a

Samtools idxstats

idxstat_report.txt

20.30 kB

HTSeq-count (CPM)

LEE595A66_S63_L001_R1_001_preprocessed_rc.tab.gz

112.79 kB

LEE595A66_S63_L001_R1_001_preprocessed_expressions.txt.gz

285.38 kB

LEE595A66_S63_L001_R1_001_preprocessed_cpm.tab.gz

140.48 kB

LEE595A66_S63_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.33 kB

HTSeq-count (CPM)

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

292.96 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.49 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

143.94 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.90 kB

BBDuk (single-end)

LEE595A66_S63_L001_R1_001_preprocessed.fastq.gz

264.19 MB

LEE595A66_S63_L001_R1_001_statistics.txt.gz

464 B

fastqc

Directory

STAR

LEE595A66_S63_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A66_S63_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.68 MB

LEE595A66_S63_L001_R1_001_preprocessed.bam.bai

3.34 MB

LEE595A66_S63_L001_R1_001_preprocessed_SJ.out.tab

1.18 MB

LEE595A66_S63_L001_R1_001_preprocessed.bam

338.39 MB

HTSeq-count (CPM)

LEE595A66_S63_L001_R1_001_preprocessed_rc.tab.gz

112.75 kB

LEE595A66_S63_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.29 kB

LEE595A66_S63_L001_R1_001_preprocessed_cpm.tab.gz

140.31 kB

LEE595A66_S63_L001_R1_001_preprocessed_expressions.txt.gz

288.17 kB

BBDuk (single-end)

LEE595A66_S63_L001_R1_001_statistics.txt.gz

135 B

LEE595A66_S63_L001_R1_001_preprocessed.fastq.gz

291.14 MB

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

LEE595A66_S63_L001_R1_001_preprocessed.fastq.gz

291.15 MB

LEE595A66_S63_L001_R1_001_statistics.txt.gz

135 B

HTSeq-count (CPM)

LEE595A66_S63_L001_R1_001_preprocessed_expressions.txt.gz

295.73 kB

LEE595A66_S63_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.01 kB

LEE595A66_S63_L001_R1_001_preprocessed_cpm.tab.gz

146.25 kB

LEE595A66_S63_L001_R1_001_preprocessed_rc.tab.gz

114.41 kB

Salmon Quant

LEE595A66_S63_L001_R1_001_preprocessed_tpm.txt.gz

133.19 kB

salmon_output

Directory

LEE595A66_S63_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A66_S63_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.84 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A66_S63_L001_R1_001_preprocessed_expressions.txt.gz

240.60 kB

Subsample FASTQ (single-end)

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.fastq.gz

290.72 MB

fastqc

Directory

STAR

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam.bai

2.73 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.18 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam

317.98 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

34.28 MB

STAR

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

254.97 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam

30.39 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.16 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam

30.40 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

254.97 MB

LEE595A66_S63_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.16 kB

STAR

LEE595A66_S63_L001_R1_001_preprocessed.bam.bai

3.35 MB

LEE595A66_S63_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.75 MB

LEE595A66_S63_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A66_S63_L001_R1_001_preprocessed.bam

406.70 MB

LEE595A66_S63_L001_R1_001_preprocessed_SJ.out.tab

1.18 MB

QoRTs QC

qorts_report.zip

5.77 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A66_S63_L001_R1_001_fastqc.zip

479.31 kB

LEE595A66_S63_L001_R1_001.fastq.gz

333.56 MB

stderr.txt

1.09 kB

BBDuk (single-end)

LEE595A66_S63_L001_R1_001_preprocessed.fastq.gz

263.75 MB

fastqc

Directory

LEE595A66_S63_L001_R1_001_statistics.txt.gz

464 B

P35_Stau2KD_1b

HTSeq-count (CPM)

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.88 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.76 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.18 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

289.22 kB

FASTQ file (single-end)

LEE595A84_S83_L001_R1_001.fastq.gz

355.50 MB

fastqc

Directory

LEE595A84_S83_L001_R1_001_fastqc.zip

475.74 kB

stderr.txt

1.09 kB

BBDuk (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_statistics.txt.gz

466 B

LEE595A84_S83_L001_R1_001_preprocessed.fastq.gz

255.52 MB

STAR

LEE595A84_S83_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.32 MB

LEE595A84_S83_L001_R1_001_preprocessed_SJ.out.tab

1010.90 kB

LEE595A84_S83_L001_R1_001_preprocessed.bam

379.04 MB

LEE595A84_S83_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A84_S83_L001_R1_001_preprocessed.bam.bai

3.71 MB

HTSeq-count (CPM)

LEE595A84_S83_L001_R1_001_preprocessed_cpm.tab.gz

139.95 kB

LEE595A84_S83_L001_R1_001_preprocessed_rc.tab.gz

112.39 kB

LEE595A84_S83_L001_R1_001_preprocessed_expressions.txt.gz

287.78 kB

LEE595A84_S83_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.88 kB

BBDuk (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_preprocessed.fastq.gz

309.43 MB

LEE595A84_S83_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_preprocessed.fastq.gz

309.45 MB

LEE595A84_S83_L001_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A84_S83_L001_R1_001_preprocessed_rc.tab.gz

114.32 kB

LEE595A84_S83_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.88 kB

LEE595A84_S83_L001_R1_001_preprocessed_cpm.tab.gz

145.51 kB

LEE595A84_S83_L001_R1_001_preprocessed_expressions.txt.gz

295.04 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.fastq.gz

309.05 MB

Salmon Quant

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A84_S83_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

205.83 kB

LEE595A84_S83_L001_R1_001_preprocessed_tpm.txt.gz

131.48 kB

LEE595A84_S83_L001_R1_001_preprocessed_expressions.txt.gz

238.64 kB

LEE595A84_S83_L001_R1_001_preprocessed.sf

1.48 MB

BBDuk (single-end)

fastqc

Directory

LEE595A84_S83_L001_R1_001_statistics.txt.gz

466 B

LEE595A84_S83_L001_R1_001_preprocessed.fastq.gz

255.10 MB

STAR

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

76.18 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam.bai

2.77 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_SJ.out.tab

971.05 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam

320.46 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

STAR

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.72 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam

25.30 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

279.47 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

279.47 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam

25.31 MB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A84_S83_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.72 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.70 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

LEE595A84_S83_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.44 MB

LEE595A84_S83_L001_R1_001_preprocessed.bam.bai

3.72 MB

LEE595A84_S83_L001_R1_001_preprocessed.bam

456.48 MB

LEE595A84_S83_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A84_S83_L001_R1_001_preprocessed_SJ.out.tab

1010.83 kB

HTSeq-count (CPM)

LEE595A84_S83_L001_R1_001_preprocessed_rc.tab.gz

112.40 kB

LEE595A84_S83_L001_R1_001_preprocessed_cpm.tab.gz

139.11 kB

LEE595A84_S83_L001_R1_001_preprocessed_expressions.txt.gz

283.31 kB

LEE595A84_S83_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.93 kB

P0_Stau2KD_1a

HTSeq-count (CPM)

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.09 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

149.03 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

300.34 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.71 kB

BBDuk (single-end)

LEE595A54_S50_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A54_S50_L001_R1_001_preprocessed.fastq.gz

353.35 MB

BBDuk (single-end)

LEE595A54_S50_L001_R1_001_preprocessed.fastq.gz

353.35 MB

fastqc

Directory

LEE595A54_S50_L001_R1_001_statistics.txt.gz

134 B

Salmon Quant

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

salmon_output

Directory

LEE595A54_S50_L001_R1_001_preprocessed_expressions.txt.gz

242.06 kB

LEE595A54_S50_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A54_S50_L001_R1_001_preprocessed_tpm.txt.gz

134.30 kB

LEE595A54_S50_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.73 kB

STAR

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

43.56 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam.bai

2.75 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.34 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam

362.93 MB

STAR

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

320.40 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.43 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam

26.63 MB

STAR

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.43 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

320.40 MB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.bam

26.63 MB

FASTQ file (single-end)

LEE595A54_S50_L001_R1_001.fastq.gz

399.99 MB

fastqc

Directory

LEE595A54_S50_L001_R1_001_fastqc.zip

471.19 kB

stderr.txt

1.09 kB

HTSeq-count (CPM)

LEE595A54_S50_L001_R1_001_preprocessed_rc.tab.gz

113.88 kB

LEE595A54_S50_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.41 kB

LEE595A54_S50_L001_R1_001_preprocessed_cpm.tab.gz

145.98 kB

LEE595A54_S50_L001_R1_001_preprocessed_expressions.txt.gz

293.48 kB

Subsample FASTQ (single-end)

LEE595A54_S50_L001_R1_001_preprocessed_downsampled.fastq.gz

352.68 MB

fastqc

Directory

Samtools idxstats

idxstat_report.txt

20.32 kB

QoRTs QC

qorts_report.zip

5.81 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

fastqc

Directory

LEE595A54_S50_L001_R1_001_preprocessed.fastq.gz

320.40 MB

LEE595A54_S50_L001_R1_001_statistics.txt.gz

473 B

STAR

LEE595A54_S50_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.46 MB

LEE595A54_S50_L001_R1_001_preprocessed.bam

480.96 MB

LEE595A54_S50_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A54_S50_L001_R1_001_preprocessed.bam.bai

3.35 MB

LEE595A54_S50_L001_R1_001_preprocessed_SJ.out.tab

1.34 MB

P35_Stau2KD_2a

HTSeq-count (CPM)

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

146.20 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.71 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.49 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.31 kB

BBDuk (single-end)

fastqc

Directory

LEE595A67_S64_L001_R1_001_statistics.txt.gz

455 B

LEE595A67_S64_L001_R1_001_preprocessed.fastq.gz

300.62 MB

STAR

LEE595A67_S64_L001_R1_001_preprocessed.bam.bai

3.36 MB

LEE595A67_S64_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A67_S64_L001_R1_001_preprocessed.bam

393.91 MB

LEE595A67_S64_L001_R1_001_preprocessed_SJ.out.tab

1.23 MB

LEE595A67_S64_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.46 MB

HTSeq-count (CPM)

LEE595A67_S64_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.90 kB

LEE595A67_S64_L001_R1_001_preprocessed_expressions.txt.gz

290.40 kB

LEE595A67_S64_L001_R1_001_preprocessed_rc.tab.gz

113.36 kB

LEE595A67_S64_L001_R1_001_preprocessed_cpm.tab.gz

141.86 kB

BBDuk (single-end)

fastqc

Directory

LEE595A67_S64_L001_R1_001_statistics.txt.gz

134 B

LEE595A67_S64_L001_R1_001_preprocessed.fastq.gz

327.81 MB

HTSeq-count (CPM)

LEE595A67_S64_L001_R1_001_preprocessed_expressions.txt.gz

287.34 kB

LEE595A67_S64_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.94 kB

LEE595A67_S64_L001_R1_001_preprocessed_rc.tab.gz

113.39 kB

LEE595A67_S64_L001_R1_001_preprocessed_cpm.tab.gz

141.28 kB

BBDuk (single-end)

fastqc

Directory

LEE595A67_S64_L001_R1_001_statistics.txt.gz

134 B

LEE595A67_S64_L001_R1_001_preprocessed.fastq.gz

327.81 MB

HTSeq-count (CPM)

LEE595A67_S64_L001_R1_001_preprocessed_expressions.txt.gz

298.18 kB

LEE595A67_S64_L001_R1_001_preprocessed_cpm.tab.gz

147.20 kB

LEE595A67_S64_L001_R1_001_preprocessed_rc.tab.gz

114.92 kB

LEE595A67_S64_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.58 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.fastq.gz

327.32 MB

Salmon Quant

salmon_output

Directory

LEE595A67_S64_L001_R1_001_preprocessed_tpm.txt.gz

134.02 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A67_S64_L001_R1_001_preprocessed_expressions.txt.gz

241.70 kB

LEE595A67_S64_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A67_S64_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.09 kB

STAR

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

33.36 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam

372.38 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.24 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam.bai

2.80 MB

STAR

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.98 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam

37.41 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

283.68 MB

STAR

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

283.68 MB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.98 kB

LEE595A67_S64_L001_R1_001_preprocessed_downsampled.bam

37.41 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.80 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

LEE595A67_S64_L001_R1_001_preprocessed.bam.bai

3.36 MB

LEE595A67_S64_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.55 MB

LEE595A67_S64_L001_R1_001_preprocessed_SJ.out.tab

1.23 MB

LEE595A67_S64_L001_R1_001_preprocessed.bam

473.54 MB

LEE595A67_S64_L001_R1_001_preprocessed_stats.txt

1.81 kB

FASTQ file (single-end)

LEE595A67_S64_L001_R1_001.fastq.gz

376.50 MB

fastqc

Directory

LEE595A67_S64_L001_R1_001_fastqc.zip

479.23 kB

stderr.txt

1.09 kB

BBDuk (single-end)

LEE595A67_S64_L001_R1_001_preprocessed.fastq.gz

300.06 MB

fastqc

Directory

LEE595A67_S64_L001_R1_001_statistics.txt.gz

455 B

P35_Stau2KD_2b

HTSeq-count (CPM)

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

291.95 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.88 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.51 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

143.13 kB

BBDuk (single-end)

LEE595A85_S84_L001_R1_001_statistics.txt.gz

467 B

fastqc

Directory

LEE595A85_S84_L001_R1_001_preprocessed.fastq.gz

285.61 MB

STAR

LEE595A85_S84_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A85_S84_L001_R1_001_preprocessed.bam

445.89 MB

LEE595A85_S84_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.60 MB

LEE595A85_S84_L001_R1_001_preprocessed.bam.bai

3.69 MB

LEE595A85_S84_L001_R1_001_preprocessed_SJ.out.tab

1.06 MB

HTSeq-count (CPM)

LEE595A85_S84_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.51 kB

LEE595A85_S84_L001_R1_001_preprocessed_rc.tab.gz

113.02 kB

LEE595A85_S84_L001_R1_001_preprocessed_cpm.tab.gz

141.83 kB

LEE595A85_S84_L001_R1_001_preprocessed_expressions.txt.gz

289.39 kB

BBDuk (single-end)

LEE595A85_S84_L001_R1_001_statistics.txt.gz

135 B

LEE595A85_S84_L001_R1_001_preprocessed.fastq.gz

338.56 MB

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

LEE595A85_S84_L001_R1_001_statistics.txt.gz

135 B

LEE595A85_S84_L001_R1_001_preprocessed.fastq.gz

338.55 MB

HTSeq-count (CPM)

LEE595A85_S84_L001_R1_001_preprocessed_rc.tab.gz

114.82 kB

LEE595A85_S84_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.45 kB

LEE595A85_S84_L001_R1_001_preprocessed_cpm.tab.gz

147.32 kB

LEE595A85_S84_L001_R1_001_preprocessed_expressions.txt.gz

297.88 kB

Salmon Quant

salmon_output

Directory

LEE595A85_S84_L001_R1_001_preprocessed_tpm.txt.gz

132.89 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A85_S84_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.80 kB

LEE595A85_S84_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A85_S84_L001_R1_001_preprocessed_expressions.txt.gz

240.50 kB

Subsample FASTQ (single-end)

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.fastq.gz

338.17 MB

fastqc

Directory

STAR

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.04 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam

385.75 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam.bai

2.84 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

74.36 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

STAR

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

301.21 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_SJ.out.tab

11.75 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam

31.94 MB

STAR

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_SJ.out.tab

11.75 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

301.21 MB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A85_S84_L001_R1_001_preprocessed_downsampled.bam

31.95 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.74 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

BBDuk (single-end)

LEE595A85_S84_L001_R1_001_preprocessed.fastq.gz

285.20 MB

fastqc

Directory

LEE595A85_S84_L001_R1_001_statistics.txt.gz

467 B

STAR

LEE595A85_S84_L001_R1_001_preprocessed.bam.bai

3.71 MB

LEE595A85_S84_L001_R1_001_preprocessed.bam

538.58 MB

LEE595A85_S84_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A85_S84_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.72 MB

LEE595A85_S84_L001_R1_001_preprocessed_SJ.out.tab

1.06 MB

HTSeq-count (CPM)

LEE595A85_S84_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.51 kB

LEE595A85_S84_L001_R1_001_preprocessed_rc.tab.gz

113.01 kB

LEE595A85_S84_L001_R1_001_preprocessed_cpm.tab.gz

141.31 kB

LEE595A85_S84_L001_R1_001_preprocessed_expressions.txt.gz

286.38 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A85_S84_L001_R1_001.fastq.gz

391.23 MB

stderr.txt

1.09 kB

LEE595A85_S84_L001_R1_001_fastqc.zip

483.14 kB

P35_Stau2KD_3b

HTSeq-count (CPM)

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.06 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

288.04 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.67 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.08 kB

BBDuk (single-end)

LEE595A86_S85_L001_R1_001_statistics.txt.gz

461 B

fastqc

Directory

LEE595A86_S85_L001_R1_001_preprocessed.fastq.gz

243.11 MB

STAR

LEE595A86_S85_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.33 MB

LEE595A86_S85_L001_R1_001_preprocessed.bam

363.16 MB

LEE595A86_S85_L001_R1_001_preprocessed_SJ.out.tab

964.13 kB

LEE595A86_S85_L001_R1_001_preprocessed.bam.bai

3.74 MB

LEE595A86_S85_L001_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

LEE595A86_S85_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.71 kB

LEE595A86_S85_L001_R1_001_preprocessed_cpm.tab.gz

139.79 kB

LEE595A86_S85_L001_R1_001_preprocessed_rc.tab.gz

112.17 kB

LEE595A86_S85_L001_R1_001_preprocessed_expressions.txt.gz

286.91 kB

BBDuk (single-end)

fastqc

Directory

LEE595A86_S85_L001_R1_001_statistics.txt.gz

134 B

LEE595A86_S85_L001_R1_001_preprocessed.fastq.gz

296.99 MB

BBDuk (single-end)

LEE595A86_S85_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A86_S85_L001_R1_001_preprocessed.fastq.gz

296.99 MB

HTSeq-count (CPM)

LEE595A86_S85_L001_R1_001_preprocessed_expressions.txt.gz

294.58 kB

LEE595A86_S85_L001_R1_001_preprocessed_rc.tab.gz

113.96 kB

LEE595A86_S85_L001_R1_001_preprocessed_cpm.tab.gz

144.80 kB

LEE595A86_S85_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.58 kB

Salmon Quant

LEE595A86_S85_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

205.88 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

salmon_output

Directory

LEE595A86_S85_L001_R1_001_preprocessed_expressions.txt.gz

238.65 kB

LEE595A86_S85_L001_R1_001_preprocessed_tpm.txt.gz

131.25 kB

LEE595A86_S85_L001_R1_001_preprocessed.sf

1.48 MB

BBDuk (single-end)

fastqc

Directory

LEE595A86_S85_L001_R1_001_statistics.txt.gz

461 B

LEE595A86_S85_L001_R1_001_preprocessed.fastq.gz

242.73 MB

STAR

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam.bai

2.80 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam

306.68 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_SJ.out.tab

923.69 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

75.16 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

STAR

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

269.91 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.64 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam

22.62 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

269.91 MB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A86_S85_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.64 kB

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.bam

22.61 MB

QoRTs QC

qorts_report.zip

5.67 MB

qorts_output

Directory

Subsample FASTQ (single-end)

LEE595A86_S85_L001_R1_001_preprocessed_downsampled.fastq.gz

296.67 MB

fastqc

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

STAR

LEE595A86_S85_L001_R1_001_preprocessed_SJ.out.tab

960.55 kB

LEE595A86_S85_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.44 MB

LEE595A86_S85_L001_R1_001_preprocessed.bam

438.41 MB

LEE595A86_S85_L001_R1_001_preprocessed.bam.bai

3.76 MB

LEE595A86_S85_L001_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

LEE595A86_S85_L001_R1_001_preprocessed_rc.tab.gz

112.13 kB

LEE595A86_S85_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.64 kB

LEE595A86_S85_L001_R1_001_preprocessed_expressions.txt.gz

283.42 kB

LEE595A86_S85_L001_R1_001_preprocessed_cpm.tab.gz

139.45 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A86_S85_L001_R1_001_fastqc.zip

475.83 kB

LEE595A86_S85_L001_R1_001.fastq.gz

341.81 MB

P7_WT_2a

HTSeq-count (CPM)

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_rc.tab.gz

117.26 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

314.09 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

117.81 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

158.07 kB

BBDuk (single-end)

LEE595A58_S54_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A58_S54_L001_R1_001_preprocessed.fastq.gz

501.00 MB

BBDuk (single-end)

fastqc

Directory

LEE595A58_S54_L001_R1_001_preprocessed.fastq.gz

501.00 MB

LEE595A58_S54_L001_R1_001_statistics.txt.gz

135 B

Salmon Quant

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

salmon_output

Directory

LEE595A58_S54_L001_R1_001_preprocessed_expressions.txt.gz

244.61 kB

LEE595A58_S54_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

214.02 kB

LEE595A58_S54_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A58_S54_L001_R1_001_preprocessed_tpm.txt.gz

136.28 kB

STAR

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam.bai

2.81 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam

511.16 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

51.60 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.54 MB

STAR

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.31 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

457.55 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam

34.08 MB

STAR

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

457.55 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.bam

34.08 MB

LEE595A58_S54_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.31 kB

STAR

LEE595A58_S54_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.43 MB

LEE595A58_S54_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A58_S54_L001_R1_001_preprocessed.bam

665.07 MB

LEE595A58_S54_L001_R1_001_preprocessed.bam.bai

3.39 MB

LEE595A58_S54_L001_R1_001_preprocessed_SJ.out.tab

1.53 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A58_S54_L001_R1_001.fastq.gz

566.83 MB

LEE595A58_S54_L001_R1_001_fastqc.zip

473.05 kB

stderr.txt

1.09 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.93 MB

Subsample FASTQ (single-end)

LEE595A58_S54_L001_R1_001_preprocessed_downsampled.fastq.gz

500.06 MB

fastqc

Directory

Samtools idxstats

idxstat_report.txt

20.35 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

HTSeq-count (CPM)

LEE595A58_S54_L001_R1_001_preprocessed_HTseq_rc.txt.gz

116.23 kB

LEE595A58_S54_L001_R1_001_preprocessed_rc.tab.gz

115.64 kB

LEE595A58_S54_L001_R1_001_preprocessed_expressions.txt.gz

303.50 kB

LEE595A58_S54_L001_R1_001_preprocessed_cpm.tab.gz

153.63 kB

BBDuk (single-end)

LEE595A58_S54_L001_R1_001_statistics.txt.gz

473 B

fastqc

Directory

LEE595A58_S54_L001_R1_001_preprocessed.fastq.gz

459.70 MB

P7_Stau2KD_2a

HTSeq-count (CPM)

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.12 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.71 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.09 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

145.58 kB

BBDuk (single-end)

fastqc

Directory

LEE595A61_S58_L001_R1_001_statistics.txt.gz

135 B

LEE595A61_S58_L001_R1_001_preprocessed.fastq.gz

307.91 MB

BBDuk (single-end)

LEE595A61_S58_L001_R1_001_preprocessed.fastq.gz

307.89 MB

fastqc

Directory

LEE595A61_S58_L001_R1_001_statistics.txt.gz

135 B

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.fastq.gz

307.36 MB

Salmon Quant

LEE595A61_S58_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A61_S58_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.71 kB

LEE595A61_S58_L001_R1_001_preprocessed_expressions.txt.gz

240.80 kB

salmon_output

Directory

LEE595A61_S58_L001_R1_001_preprocessed_tpm.txt.gz

133.37 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

STAR

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam.bai

2.71 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam

290.76 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.67 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.12 MB

STAR

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.85 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam

18.20 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

284.83 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

284.83 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.85 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam

18.20 MB

LEE595A61_S58_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A61_S58_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.25 MB

LEE595A61_S58_L001_R1_001_preprocessed.bam.bai

3.55 MB

LEE595A61_S58_L001_R1_001_preprocessed.bam

409.31 MB

LEE595A61_S58_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A61_S58_L001_R1_001_preprocessed_SJ.out.tab

1.15 MB

QoRTs QC

qorts_report.zip

5.73 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.31 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

HTSeq-count (CPM)

LEE595A61_S58_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.87 kB

LEE595A61_S58_L001_R1_001_preprocessed_rc.tab.gz

113.30 kB

LEE595A61_S58_L001_R1_001_preprocessed_expressions.txt.gz

289.80 kB

LEE595A61_S58_L001_R1_001_preprocessed_cpm.tab.gz

143.31 kB

FASTQ file (single-end)

LEE595A61_S58_L001_R1_001.fastq.gz

348.42 MB

stderr.txt

1.09 kB

fastqc

Directory

LEE595A61_S58_L001_R1_001_fastqc.zip

470.67 kB

BBDuk (single-end)

fastqc

Directory

LEE595A61_S58_L001_R1_001_statistics.txt.gz

472 B

LEE595A61_S58_L001_R1_001_preprocessed.fastq.gz

265.03 MB

P7_WT_3a

HTSeq-count (CPM)

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.05 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.42 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.10 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

297.36 kB

BBDuk (single-end)

LEE595A59_S55_L001_R1_001_preprocessed.fastq.gz

298.04 MB

fastqc

Directory

LEE595A59_S55_L001_R1_001_statistics.txt.gz

133 B

BBDuk (single-end)

LEE595A59_S55_L001_R1_001_preprocessed.fastq.gz

298.04 MB

LEE595A59_S55_L001_R1_001_statistics.txt.gz

133 B

fastqc

Directory

Salmon Quant

salmon_output

Directory

LEE595A59_S55_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A59_S55_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.70 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A59_S55_L001_R1_001_preprocessed_expressions.txt.gz

241.28 kB

LEE595A59_S55_L001_R1_001_preprocessed_tpm.txt.gz

133.70 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.fastq.gz

297.54 MB

STAR

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.19 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

45.46 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam

300.97 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam.bai

2.68 MB

STAR

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam

19.43 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

273.51 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.70 kB

STAR

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

273.51 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.70 kB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled.bam

19.42 MB

LEE595A59_S55_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A59_S55_L001_R1_001_preprocessed.bam.bai

3.36 MB

LEE595A59_S55_L001_R1_001_preprocessed.bam

405.53 MB

LEE595A59_S55_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.44 MB

LEE595A59_S55_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A59_S55_L001_R1_001_preprocessed_SJ.out.tab

1.20 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A59_S55_L001_R1_001.fastq.gz

337.68 MB

stderr.txt

1.09 kB

LEE595A59_S55_L001_R1_001_fastqc.zip

474.44 kB

QoRTs QC

qorts_report.zip

5.74 MB

qorts_output

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Samtools idxstats

idxstat_report.txt

20.31 kB

HTSeq-count (CPM)

LEE595A59_S55_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.77 kB

LEE595A59_S55_L001_R1_001_preprocessed_rc.tab.gz

113.23 kB

LEE595A59_S55_L001_R1_001_preprocessed_cpm.tab.gz

143.43 kB

LEE595A59_S55_L001_R1_001_preprocessed_expressions.txt.gz

289.59 kB

BBDuk (single-end)

fastqc

Directory

LEE595A59_S55_L001_R1_001_preprocessed.fastq.gz

264.45 MB

LEE595A59_S55_L001_R1_001_statistics.txt.gz

459 B

P7_Stau2KD_1a

HTSeq-count (CPM)

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.63 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.42 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

145.48 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.03 kB

BBDuk (single-end)

LEE595A60_S57_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A60_S57_L001_R1_001_preprocessed.fastq.gz

312.30 MB

BBDuk (single-end)

LEE595A60_S57_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A60_S57_L001_R1_001_preprocessed.fastq.gz

312.30 MB

Salmon Quant

LEE595A60_S57_L001_R1_001_preprocessed_tpm.txt.gz

133.43 kB

salmon_output

Directory

LEE595A60_S57_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.07 kB

LEE595A60_S57_L001_R1_001_preprocessed_expressions.txt.gz

240.95 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A60_S57_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.fastq.gz

311.83 MB

STAR

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam

316.68 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

53.77 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam.bai

2.68 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.20 MB

STAR

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam

21.65 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.74 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

285.53 MB

STAR

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

285.53 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A60_S57_L001_R1_001_preprocessed_downsampled.bam

21.65 MB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A60_S57_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.74 kB

STAR

LEE595A60_S57_L001_R1_001_preprocessed.bam

432.55 MB

LEE595A60_S57_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.40 MB

LEE595A60_S57_L001_R1_001_preprocessed_SJ.out.tab

1.22 MB

LEE595A60_S57_L001_R1_001_preprocessed.bam.bai

3.41 MB

LEE595A60_S57_L001_R1_001_preprocessed_stats.txt

1.81 kB

Samtools idxstats

idxstat_report.txt

20.31 kB

QoRTs QC

qorts_report.zip

5.77 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

HTSeq-count (CPM)

LEE595A60_S57_L001_R1_001_preprocessed_rc.tab.gz

113.57 kB

LEE595A60_S57_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.04 kB

LEE595A60_S57_L001_R1_001_preprocessed_cpm.tab.gz

144.04 kB

LEE595A60_S57_L001_R1_001_preprocessed_expressions.txt.gz

291.07 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A60_S57_L001_R1_001.fastq.gz

355.84 MB

stderr.txt

1.09 kB

LEE595A60_S57_L001_R1_001_fastqc.zip

477.05 kB

BBDuk (single-end)

fastqc

Directory

LEE595A60_S57_L001_R1_001_preprocessed.fastq.gz

273.46 MB

LEE595A60_S57_L001_R1_001_statistics.txt.gz

476 B

P35_WT_1a

HTSeq-count (CPM)

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.03 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.95 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

289.22 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.46 kB

BBDuk (single-end)

fastqc

Directory

LEE595A63_S60_L001_R1_001_statistics.txt.gz

447 B

LEE595A63_S60_L001_R1_001_preprocessed.fastq.gz

238.28 MB

STAR

LEE595A63_S60_L001_R1_001_preprocessed_SJ.out.tab

1.13 MB

LEE595A63_S60_L001_R1_001_preprocessed.bam.bai

3.39 MB

LEE595A63_S60_L001_R1_001_preprocessed.bam

318.77 MB

LEE595A63_S60_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.01 MB

LEE595A63_S60_L001_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

LEE595A63_S60_L001_R1_001_preprocessed_expressions.txt.gz

285.67 kB

LEE595A63_S60_L001_R1_001_preprocessed_rc.tab.gz

112.35 kB

LEE595A63_S60_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.92 kB

LEE595A63_S60_L001_R1_001_preprocessed_cpm.tab.gz

138.98 kB

BBDuk (single-end)

LEE595A63_S60_L001_R1_001_preprocessed.fastq.gz

266.81 MB

fastqc

Directory

LEE595A63_S60_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A63_S60_L001_R1_001_preprocessed.fastq.gz

266.80 MB

LEE595A63_S60_L001_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A63_S60_L001_R1_001_preprocessed_rc.tab.gz

113.99 kB

LEE595A63_S60_L001_R1_001_preprocessed_expressions.txt.gz

292.56 kB

LEE595A63_S60_L001_R1_001_preprocessed_cpm.tab.gz

144.21 kB

LEE595A63_S60_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.60 kB

Salmon Quant

salmon_output

Directory

LEE595A63_S60_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.53 kB

LEE595A63_S60_L001_R1_001_preprocessed_tpm.txt.gz

132.82 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A63_S60_L001_R1_001_preprocessed_expressions.txt.gz

240.40 kB

LEE595A63_S60_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.fastq.gz

266.44 MB

fastqc

Directory

STAR

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam.bai

2.74 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam

295.67 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.12 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.08 MB

STAR

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

235.67 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam

26.25 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.34 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam

26.26 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

235.67 MB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.34 kB

LEE595A63_S60_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

QoRTs QC

qorts_report.zip

5.75 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.30 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

LEE595A63_S60_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

9.13 MB

LEE595A63_S60_L001_R1_001_preprocessed.bam

382.31 MB

LEE595A63_S60_L001_R1_001_preprocessed.bam.bai

3.39 MB

LEE595A63_S60_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A63_S60_L001_R1_001_preprocessed.bw

6.86 MB

LEE595A63_S60_L001_R1_001_preprocessed_SJ.out.tab

1.13 MB

HTSeq-count (CPM)

LEE595A63_S60_L001_R1_001_preprocessed_cpm.tab.gz

138.01 kB

LEE595A63_S60_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.90 kB

LEE595A63_S60_L001_R1_001_preprocessed_expressions.txt.gz

281.86 kB

LEE595A63_S60_L001_R1_001_preprocessed_rc.tab.gz

112.33 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A63_S60_L001_R1_001.fastq.gz

305.71 MB

LEE595A63_S60_L001_R1_001_fastqc.zip

485.50 kB

stderr.txt

1.09 kB

BBDuk (single-end)

fastqc

Directory

LEE595A63_S60_L001_R1_001_preprocessed.fastq.gz

237.88 MB

LEE595A63_S60_L001_R1_001_statistics.txt.gz

447 B

P35_WT_2a

HTSeq-count (CPM)

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.83 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

298.46 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.51 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.90 kB

BBDuk (single-end)

fastqc

Directory

LEE595A64_S61_L001_R1_001_statistics.txt.gz

461 B

LEE595A64_S61_L001_R1_001_preprocessed.fastq.gz

326.17 MB

STAR

LEE595A64_S61_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.93 MB

LEE595A64_S61_L001_R1_001_preprocessed.bam.bai

3.38 MB

LEE595A64_S61_L001_R1_001_preprocessed.bam

420.45 MB

LEE595A64_S61_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A64_S61_L001_R1_001_preprocessed_SJ.out.tab

1.33 MB

HTSeq-count (CPM)

LEE595A64_S61_L001_R1_001_preprocessed_rc.tab.gz

113.77 kB

LEE595A64_S61_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.33 kB

LEE595A64_S61_L001_R1_001_preprocessed_cpm.tab.gz

143.46 kB

LEE595A64_S61_L001_R1_001_preprocessed_expressions.txt.gz

292.72 kB

BBDuk (single-end)

fastqc

Directory

LEE595A64_S61_L001_R1_001_preprocessed.fastq.gz

359.68 MB

LEE595A64_S61_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A64_S61_L001_R1_001_statistics.txt.gz

134 B

LEE595A64_S61_L001_R1_001_preprocessed.fastq.gz

359.68 MB

HTSeq-count (CPM)

LEE595A64_S61_L001_R1_001_preprocessed_expressions.txt.gz

301.04 kB

LEE595A64_S61_L001_R1_001_preprocessed_cpm.tab.gz

149.73 kB

LEE595A64_S61_L001_R1_001_preprocessed_rc.tab.gz

115.29 kB

LEE595A64_S61_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.89 kB

Salmon Quant

LEE595A64_S61_L001_R1_001_preprocessed_expressions.txt.gz

242.21 kB

salmon_output

Directory

LEE595A64_S61_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A64_S61_L001_R1_001_preprocessed_tpm.txt.gz

134.48 kB

LEE595A64_S61_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

211.13 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

STAR

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

42.49 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam.bai

2.79 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.33 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam

395.41 MB

STAR

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam

36.17 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

316.52 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.30 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.30 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

316.52 MB

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.bam

36.18 MB

QoRTs QC

qorts_report.zip

5.84 MB

qorts_output

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

Subsample FASTQ (single-end)

LEE595A64_S61_L001_R1_001_preprocessed_downsampled.fastq.gz

359.14 MB

fastqc

Directory

Samtools idxstats

idxstat_report.txt

20.33 kB

STAR

LEE595A64_S61_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.03 MB

LEE595A64_S61_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A64_S61_L001_R1_001_preprocessed.bam

506.05 MB

LEE595A64_S61_L001_R1_001_preprocessed.bam.bai

3.39 MB

LEE595A64_S61_L001_R1_001_preprocessed_SJ.out.tab

1.33 MB

FASTQ file (single-end)

LEE595A64_S61_L001_R1_001.fastq.gz

412.01 MB

fastqc

Directory

LEE595A64_S61_L001_R1_001_fastqc.zip

480.06 kB

stderr.txt

1.09 kB

HTSeq-count (CPM)

LEE595A64_S61_L001_R1_001_preprocessed_cpm.tab.gz

143.88 kB

LEE595A64_S61_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.29 kB

LEE595A64_S61_L001_R1_001_preprocessed_rc.tab.gz

113.71 kB

LEE595A64_S61_L001_R1_001_preprocessed_expressions.txt.gz

290.42 kB

BBDuk (single-end)

fastqc

Directory

LEE595A64_S61_L001_R1_001_preprocessed.fastq.gz

325.64 MB

LEE595A64_S61_L001_R1_001_statistics.txt.gz

461 B

P35_WT_3a

HTSeq-count (CPM)

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

299.77 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.00 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

148.93 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.60 kB

BBDuk (single-end)

fastqc

Directory

LEE595A65_S62_L001_R1_001_statistics.txt.gz

453 B

LEE595A65_S62_L001_R1_001_preprocessed.fastq.gz

349.04 MB

STAR

LEE595A65_S62_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A65_S62_L001_R1_001_preprocessed.bam.bai

3.47 MB

LEE595A65_S62_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

13.20 MB

LEE595A65_S62_L001_R1_001_preprocessed.bam

468.98 MB

LEE595A65_S62_L001_R1_001_preprocessed_SJ.out.tab

1.36 MB

HTSeq-count (CPM)

LEE595A65_S62_L001_R1_001_preprocessed_cpm.tab.gz

145.57 kB

LEE595A65_S62_L001_R1_001_preprocessed_expressions.txt.gz

295.05 kB

LEE595A65_S62_L001_R1_001_preprocessed_rc.tab.gz

114.05 kB

LEE595A65_S62_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.56 kB

BBDuk (single-end)

fastqc

Directory

LEE595A65_S62_L001_R1_001_statistics.txt.gz

134 B

LEE595A65_S62_L001_R1_001_preprocessed.fastq.gz

394.71 MB

BBDuk (single-end)

LEE595A65_S62_L001_R1_001_preprocessed.fastq.gz

394.72 MB

fastqc

Directory

LEE595A65_S62_L001_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A65_S62_L001_R1_001_preprocessed_rc.tab.gz

114.06 kB

LEE595A65_S62_L001_R1_001_preprocessed_cpm.tab.gz

145.45 kB

LEE595A65_S62_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.57 kB

LEE595A65_S62_L001_R1_001_preprocessed_expressions.txt.gz

292.41 kB

HTSeq-count (CPM)

LEE595A65_S62_L001_R1_001_preprocessed_HTseq_rc.txt.gz

116.23 kB

LEE595A65_S62_L001_R1_001_preprocessed_expressions.txt.gz

303.69 kB

LEE595A65_S62_L001_R1_001_preprocessed_cpm.tab.gz

151.37 kB

LEE595A65_S62_L001_R1_001_preprocessed_rc.tab.gz

115.58 kB

Subsample FASTQ (single-end)

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.fastq.gz

394.22 MB

fastqc

Directory

Salmon Quant

salmon_output

Directory

LEE595A65_S62_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A65_S62_L001_R1_001_preprocessed_tpm.txt.gz

133.64 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A65_S62_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.11 kB

LEE595A65_S62_L001_R1_001_preprocessed_expressions.txt.gz

241.46 kB

STAR

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.36 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam.bai

2.81 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam

431.03 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.79 MB

STAR

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_SJ.out.tab

12.05 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

347.16 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam

40.36 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

347.16 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam

40.37 MB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled_SJ.out.tab

12.05 kB

LEE595A65_S62_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A65_S62_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

13.34 MB

LEE595A65_S62_L001_R1_001_preprocessed.bam.bai

3.48 MB

LEE595A65_S62_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A65_S62_L001_R1_001_preprocessed_SJ.out.tab

1.37 MB

LEE595A65_S62_L001_R1_001_preprocessed.bam

565.37 MB

Samtools idxstats

idxstat_report.txt

20.34 kB

QoRTs QC

qorts_report.zip

5.90 MB

qorts_output

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

FASTQ file (single-end)

fastqc

Directory

LEE595A65_S62_L001_R1_001.fastq.gz

453.38 MB

LEE595A65_S62_L001_R1_001_fastqc.zip

481.77 kB

stderr.txt

1.09 kB

BBDuk (single-end)

LEE595A65_S62_L001_R1_001_preprocessed.fastq.gz

348.49 MB

LEE595A65_S62_L001_R1_001_statistics.txt.gz

453 B

fastqc

Directory

P7_Stau2KD_1b

HTSeq-count (CPM)

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

150.10 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.48 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

116.04 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

301.24 kB

BBDuk (single-end)

fastqc

Directory

LEE595A78_S76_L001_R1_001_preprocessed.fastq.gz

465.08 MB

LEE595A78_S76_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

LEE595A78_S76_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A78_S76_L001_R1_001_preprocessed.fastq.gz

464.99 MB

Salmon Quant

salmon_output

Directory

LEE595A78_S76_L001_R1_001_preprocessed_expressions.txt.gz

241.91 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A78_S76_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A78_S76_L001_R1_001_preprocessed_tpm.txt.gz

134.07 kB

LEE595A78_S76_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.57 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.fastq.gz

464.46 MB

BBDuk (single-end)

LEE595A78_S76_L001_R1_001_preprocessed.fastq.gz

365.09 MB

fastqc

Directory

LEE595A78_S76_L001_R1_001_statistics.txt.gz

456 B

STAR

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam

395.43 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

142.12 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.20 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam.bai

2.79 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.44 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

439.25 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam

20.37 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_SJ.out.tab

8.44 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

439.26 MB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A78_S76_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A78_S76_L001_R1_001_preprocessed_downsampled.bam

20.37 MB

QoRTs QC

qorts_report.zip

5.83 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.24 MB

Samtools idxstats

idxstat_report.txt

20.33 kB

STAR

LEE595A78_S76_L001_R1_001_preprocessed.bam.bai

3.81 MB

LEE595A78_S76_L001_R1_001_preprocessed.bam

604.94 MB

LEE595A78_S76_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.63 MB

LEE595A78_S76_L001_R1_001_preprocessed_SJ.out.tab

1.25 MB

LEE595A78_S76_L001_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

LEE595A78_S76_L001_R1_001_preprocessed_cpm.tab.gz

149.34 kB

LEE595A78_S76_L001_R1_001_preprocessed_rc.tab.gz

115.03 kB

LEE595A78_S76_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.56 kB

LEE595A78_S76_L001_R1_001_preprocessed_expressions.txt.gz

298.17 kB

FASTQ file (single-end)

stderr.txt

1.09 kB

fastqc

Directory

LEE595A78_S76_L001_R1_001.fastq.gz

529.54 MB

LEE595A78_S76_L001_R1_001_fastqc.zip

477.64 kB

P35_WT_1b

HTSeq-count (CPM)

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.85 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.84 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

289.18 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.28 kB

BBDuk (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001_preprocessed.fastq.gz

258.86 MB

LEE595A81_S80_L001_R1_001_statistics.txt.gz

468 B

STAR

LEE595A81_S80_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.47 MB

LEE595A81_S80_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A81_S80_L001_R1_001_preprocessed.bam

383.47 MB

LEE595A81_S80_L001_R1_001_preprocessed_SJ.out.tab

1.00 MB

LEE595A81_S80_L001_R1_001_preprocessed.bam.bai

3.77 MB

HTSeq-count (CPM)

LEE595A81_S80_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.29 kB

LEE595A81_S80_L001_R1_001_preprocessed_expressions.txt.gz

289.68 kB

LEE595A81_S80_L001_R1_001_preprocessed_rc.tab.gz

112.72 kB

LEE595A81_S80_L001_R1_001_preprocessed_cpm.tab.gz

141.38 kB

BBDuk (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001_preprocessed.fastq.gz

319.09 MB

LEE595A81_S80_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001_statistics.txt.gz

135 B

LEE595A81_S80_L001_R1_001_preprocessed.fastq.gz

319.11 MB

HTSeq-count (CPM)

LEE595A81_S80_L001_R1_001_preprocessed_expressions.txt.gz

296.10 kB

LEE595A81_S80_L001_R1_001_preprocessed_cpm.tab.gz

146.19 kB

LEE595A81_S80_L001_R1_001_preprocessed_rc.tab.gz

114.49 kB

LEE595A81_S80_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.11 kB

Salmon Quant

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A81_S80_L001_R1_001_preprocessed_expressions.txt.gz

239.43 kB

LEE595A81_S80_L001_R1_001_preprocessed_tpm.txt.gz

131.94 kB

LEE595A81_S80_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

206.41 kB

LEE595A81_S80_L001_R1_001_preprocessed.sf

1.48 MB

BBDuk (single-end)

LEE595A81_S80_L001_R1_001_preprocessed.fastq.gz

258.58 MB

fastqc

Directory

LEE595A81_S80_L001_R1_001_statistics.txt.gz

468 B

STAR

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

83.06 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam

321.95 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_SJ.out.tab

985.59 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam.bai

2.80 MB

STAR

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

291.73 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.28 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam

22.52 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam

22.52 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

291.73 MB

LEE595A81_S80_L001_R1_001_preprocessed_downsampled_SJ.out.tab

9.28 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.71 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001_preprocessed_downsampled.fastq.gz

318.78 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

STAR

LEE595A81_S80_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.59 MB

LEE595A81_S80_L001_R1_001_preprocessed.bam

464.15 MB

LEE595A81_S80_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A81_S80_L001_R1_001_preprocessed_SJ.out.tab

1.00 MB

LEE595A81_S80_L001_R1_001_preprocessed.bam.bai

3.78 MB

HTSeq-count (CPM)

LEE595A81_S80_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.22 kB

LEE595A81_S80_L001_R1_001_preprocessed_cpm.tab.gz

141.24 kB

LEE595A81_S80_L001_R1_001_preprocessed_rc.tab.gz

112.67 kB

LEE595A81_S80_L001_R1_001_preprocessed_expressions.txt.gz

286.61 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A81_S80_L001_R1_001.fastq.gz

367.02 MB

LEE595A81_S80_L001_R1_001_fastqc.zip

474.23 kB

stderr.txt

1.09 kB

P35_WT_2b

HTSeq-count (CPM)

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

144.59 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.74 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

293.67 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.14 kB

FASTQ file (single-end)

stderr.txt

1.09 kB

fastqc

Directory

LEE595A82_S81_L001_R1_001.fastq.gz

409.67 MB

LEE595A82_S81_L001_R1_001_fastqc.zip

481.46 kB

BBDuk (single-end)

fastqc

Directory

LEE595A82_S81_L001_R1_001_preprocessed.fastq.gz

297.88 MB

LEE595A82_S81_L001_R1_001_statistics.txt.gz

461 B

STAR

LEE595A82_S81_L001_R1_001_preprocessed.bam

437.93 MB

LEE595A82_S81_L001_R1_001_preprocessed_SJ.out.tab

1.08 MB

LEE595A82_S81_L001_R1_001_preprocessed.bam.bai

3.71 MB

LEE595A82_S81_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.80 MB

LEE595A82_S81_L001_R1_001_preprocessed_stats.txt

1.81 kB

HTSeq-count (CPM)

LEE595A82_S81_L001_R1_001_preprocessed_rc.tab.gz

113.25 kB

LEE595A82_S81_L001_R1_001_preprocessed_cpm.tab.gz

142.97 kB

LEE595A82_S81_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.75 kB

LEE595A82_S81_L001_R1_001_preprocessed_expressions.txt.gz

291.69 kB

BBDuk (single-end)

fastqc

Directory

LEE595A82_S81_L001_R1_001_statistics.txt.gz

134 B

LEE595A82_S81_L001_R1_001_preprocessed.fastq.gz

355.37 MB

BBDuk (single-end)

fastqc

Directory

LEE595A82_S81_L001_R1_001_statistics.txt.gz

134 B

LEE595A82_S81_L001_R1_001_preprocessed.fastq.gz

355.38 MB

HTSeq-count (CPM)

LEE595A82_S81_L001_R1_001_preprocessed_cpm.tab.gz

149.14 kB

LEE595A82_S81_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.62 kB

LEE595A82_S81_L001_R1_001_preprocessed_rc.tab.gz

115.00 kB

LEE595A82_S81_L001_R1_001_preprocessed_expressions.txt.gz

300.11 kB

Salmon Quant

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A82_S81_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.04 kB

LEE595A82_S81_L001_R1_001_preprocessed_expressions.txt.gz

240.37 kB

LEE595A82_S81_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A82_S81_L001_R1_001_preprocessed_tpm.txt.gz

132.72 kB

BBDuk (single-end)

LEE595A82_S81_L001_R1_001_preprocessed.fastq.gz

297.42 MB

fastqc

Directory

LEE595A82_S81_L001_R1_001_statistics.txt.gz

461 B

STAR

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam

371.66 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

80.62 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam.bai

2.83 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.05 MB

STAR

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam

29.80 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_SJ.out.tab

11.94 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

319.99 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

319.99 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam

29.81 MB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_SJ.out.tab

11.94 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A82_S81_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.94 MB

LEE595A82_S81_L001_R1_001_preprocessed.bam.bai

3.71 MB

LEE595A82_S81_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A82_S81_L001_R1_001_preprocessed_SJ.out.tab

1.08 MB

LEE595A82_S81_L001_R1_001_preprocessed.bam

530.14 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A82_S81_L001_R1_001_preprocessed_downsampled.fastq.gz

354.99 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.76 MB

HTSeq-count (CPM)

LEE595A82_S81_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.80 kB

LEE595A82_S81_L001_R1_001_preprocessed_rc.tab.gz

113.29 kB

LEE595A82_S81_L001_R1_001_preprocessed_expressions.txt.gz

288.87 kB

LEE595A82_S81_L001_R1_001_preprocessed_cpm.tab.gz

142.64 kB

P35_WT_3b

HTSeq-count (CPM)

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.85 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.96 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.39 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

146.15 kB

BBDuk (single-end)

LEE595A83_S82_L001_R1_001_statistics.txt.gz

472 B

fastqc

Directory

LEE595A83_S82_L001_R1_001_preprocessed.fastq.gz

315.89 MB

STAR

LEE595A83_S82_L001_R1_001_preprocessed_SJ.out.tab

1.09 MB

LEE595A83_S82_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.25 MB

LEE595A83_S82_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A83_S82_L001_R1_001_preprocessed.bam

440.00 MB

LEE595A83_S82_L001_R1_001_preprocessed.bam.bai

3.66 MB

HTSeq-count (CPM)

LEE595A83_S82_L001_R1_001_preprocessed_rc.tab.gz

113.21 kB

LEE595A83_S82_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.77 kB

LEE595A83_S82_L001_R1_001_preprocessed_cpm.tab.gz

142.67 kB

LEE595A83_S82_L001_R1_001_preprocessed_expressions.txt.gz

291.81 kB

BBDuk (single-end)

fastqc

Directory

LEE595A83_S82_L001_R1_001_preprocessed.fastq.gz

371.14 MB

LEE595A83_S82_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

LEE595A83_S82_L001_R1_001_preprocessed.fastq.gz

371.13 MB

fastqc

Directory

LEE595A83_S82_L001_R1_001_statistics.txt.gz

135 B

HTSeq-count (CPM)

LEE595A83_S82_L001_R1_001_preprocessed_HTseq_rc.txt.gz

116.01 kB

LEE595A83_S82_L001_R1_001_preprocessed_cpm.tab.gz

148.90 kB

LEE595A83_S82_L001_R1_001_preprocessed_expressions.txt.gz

299.78 kB

LEE595A83_S82_L001_R1_001_preprocessed_rc.tab.gz

115.40 kB

Salmon Quant

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A83_S82_L001_R1_001_preprocessed_tpm.txt.gz

132.56 kB

LEE595A83_S82_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.51 kB

LEE595A83_S82_L001_R1_001_preprocessed_expressions.txt.gz

239.99 kB

LEE595A83_S82_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.fastq.gz

370.65 MB

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

LEE595A83_S82_L001_R1_001_statistics.txt.gz

472 B

LEE595A83_S82_L001_R1_001_preprocessed.fastq.gz

315.41 MB

STAR

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam.bai

2.82 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam

385.54 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

75.32 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.08 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

STAR

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam

24.92 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.04 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

340.43 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

340.44 MB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_SJ.out.tab

10.04 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A83_S82_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A83_S82_L001_R1_001_preprocessed_downsampled.bam

24.92 MB

QoRTs QC

qorts_report.zip

5.76 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

LEE595A83_S82_L001_R1_001_preprocessed.bam

531.83 MB

LEE595A83_S82_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.39 MB

LEE595A83_S82_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A83_S82_L001_R1_001_preprocessed_SJ.out.tab

1.09 MB

LEE595A83_S82_L001_R1_001_preprocessed.bam.bai

3.67 MB

HTSeq-count (CPM)

LEE595A83_S82_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.80 kB

LEE595A83_S82_L001_R1_001_preprocessed_rc.tab.gz

113.23 kB

LEE595A83_S82_L001_R1_001_preprocessed_cpm.tab.gz

143.39 kB

LEE595A83_S82_L001_R1_001_preprocessed_expressions.txt.gz

289.91 kB

FASTQ file (single-end)

LEE595A83_S82_L001_R1_001.fastq.gz

426.10 MB

fastqc

Directory

LEE595A83_S82_L001_R1_001_fastqc.zip

478.67 kB

stderr.txt

1.09 kB

P7_WT_1b

HTSeq-count (CPM)

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_rc.tab.gz

116.14 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

307.01 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

154.15 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

116.72 kB

BBDuk (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001_preprocessed.fastq.gz

482.17 MB

LEE595A75_S73_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001_statistics.txt.gz

135 B

LEE595A75_S73_L001_R1_001_preprocessed.fastq.gz

482.14 MB

Salmon Quant

salmon_output

Directory

LEE595A75_S73_L001_R1_001_preprocessed_expressions.txt.gz

242.73 kB

LEE595A75_S73_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

210.88 kB

LEE595A75_S73_L001_R1_001_preprocessed_tpm.txt.gz

134.76 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A75_S73_L001_R1_001_preprocessed.sf

1.49 MB

BBDuk (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001_statistics.txt.gz

469 B

LEE595A75_S73_L001_R1_001_preprocessed.fastq.gz

404.64 MB

STAR

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

108.39 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.31 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam

438.80 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam.bai

2.86 MB

STAR

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

455.05 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam

20.51 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.89 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

455.05 MB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.89 kB

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.bam

20.51 MB

STAR

LEE595A75_S73_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

12.75 MB

LEE595A75_S73_L001_R1_001_preprocessed.bam.bai

3.73 MB

LEE595A75_S73_L001_R1_001_preprocessed_SJ.out.tab

1.35 MB

LEE595A75_S73_L001_R1_001_preprocessed.bam

632.12 MB

LEE595A75_S73_L001_R1_001_preprocessed_stats.txt

1.81 kB

QoRTs QC

qorts_report.zip

5.85 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001_preprocessed_downsampled.fastq.gz

481.34 MB

Samtools idxstats

idxstat_report.txt

20.35 kB

HTSeq-count (CPM)

LEE595A75_S73_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.70 kB

LEE595A75_S73_L001_R1_001_preprocessed_expressions.txt.gz

300.72 kB

LEE595A75_S73_L001_R1_001_preprocessed_rc.tab.gz

115.16 kB

LEE595A75_S73_L001_R1_001_preprocessed_cpm.tab.gz

151.61 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A75_S73_L001_R1_001.fastq.gz

545.63 MB

LEE595A75_S73_L001_R1_001_fastqc.zip

473.58 kB

stderr.txt

1.09 kB

P7_WT_2b

HTSeq-count (CPM)

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.16 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.76 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

146.15 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

296.03 kB

BBDuk (single-end)

LEE595A76_S74_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A76_S74_L001_R1_001_preprocessed.fastq.gz

334.95 MB

BBDuk (single-end)

LEE595A76_S74_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A76_S74_L001_R1_001_preprocessed.fastq.gz

334.95 MB

Salmon Quant

LEE595A76_S74_L001_R1_001_preprocessed_expressions.txt.gz

240.19 kB

LEE595A76_S74_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.67 kB

salmon_output

Directory

LEE595A76_S74_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A76_S74_L001_R1_001_preprocessed_tpm.txt.gz

132.68 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.fastq.gz

334.42 MB

BBDuk (single-end)

fastqc

Directory

LEE595A76_S74_L001_R1_001_preprocessed.fastq.gz

279.41 MB

LEE595A76_S74_L001_R1_001_statistics.txt.gz

467 B

STAR

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.02 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam

303.87 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam.bai

2.69 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

78.38 MB

STAR

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

315.38 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.66 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam

15.19 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.66 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

315.38 MB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A76_S74_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A76_S74_L001_R1_001_preprocessed_downsampled.bam

15.19 MB

QoRTs QC

qorts_report.zip

5.70 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.31 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

LEE595A76_S74_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.09 MB

LEE595A76_S74_L001_R1_001_preprocessed.bam.bai

3.61 MB

LEE595A76_S74_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A76_S74_L001_R1_001_preprocessed.bam

441.40 MB

LEE595A76_S74_L001_R1_001_preprocessed_SJ.out.tab

1.06 MB

HTSeq-count (CPM)

LEE595A76_S74_L001_R1_001_preprocessed_rc.tab.gz

113.43 kB

LEE595A76_S74_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.94 kB

LEE595A76_S74_L001_R1_001_preprocessed_cpm.tab.gz

144.90 kB

LEE595A76_S74_L001_R1_001_preprocessed_expressions.txt.gz

292.06 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A76_S74_L001_R1_001.fastq.gz

380.47 MB

LEE595A76_S74_L001_R1_001_fastqc.zip

472.45 kB

P7_WT_3b

HTSeq-count (CPM)

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

295.29 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.97 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.37 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

145.79 kB

BBDuk (single-end)

LEE595A77_S75_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A77_S75_L001_R1_001_preprocessed.fastq.gz

339.69 MB

BBDuk (single-end)

fastqc

Directory

LEE595A77_S75_L001_R1_001_preprocessed.fastq.gz

339.71 MB

LEE595A77_S75_L001_R1_001_statistics.txt.gz

135 B

Salmon Quant

salmon_output

Directory

LEE595A77_S75_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A77_S75_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.01 kB

LEE595A77_S75_L001_R1_001_preprocessed_tpm.txt.gz

132.52 kB

LEE595A77_S75_L001_R1_001_preprocessed_expressions.txt.gz

239.70 kB

BBDuk (single-end)

fastqc

Directory

LEE595A77_S75_L001_R1_001_statistics.txt.gz

477 B

LEE595A77_S75_L001_R1_001_preprocessed.fastq.gz

277.53 MB

STAR

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam

301.33 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1022.53 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam.bai

2.74 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

87.23 MB

STAR

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam

13.62 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

321.85 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.07 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam

13.62 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

321.85 MB

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A77_S75_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.07 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A77_S75_L001_R1_001_fastqc.zip

472.46 kB

LEE595A77_S75_L001_R1_001.fastq.gz

385.01 MB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.71 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A77_S75_L001_R1_001_preprocessed_downsampled.fastq.gz

339.18 MB

Samtools idxstats

idxstat_report.txt

20.30 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

LEE595A77_S75_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

8.24 MB

LEE595A77_S75_L001_R1_001_preprocessed.bam.bai

3.69 MB

LEE595A77_S75_L001_R1_001_preprocessed.bam

441.48 MB

LEE595A77_S75_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A77_S75_L001_R1_001_preprocessed_SJ.out.tab

1.04 MB

HTSeq-count (CPM)

LEE595A77_S75_L001_R1_001_preprocessed_cpm.tab.gz

144.18 kB

LEE595A77_S75_L001_R1_001_preprocessed_rc.tab.gz

113.47 kB

LEE595A77_S75_L001_R1_001_preprocessed_expressions.txt.gz

291.06 kB

LEE595A77_S75_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.04 kB

P7_Stau2KD_3b

HTSeq-count (CPM)

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.52 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

303.68 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

116.12 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

151.69 kB

BBDuk (single-end)

fastqc

Directory

LEE595A80_S79_L001_R1_001_statistics.txt.gz

135 B

LEE595A80_S79_L001_R1_001_preprocessed.fastq.gz

431.86 MB

BBDuk (single-end)

LEE595A80_S79_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A80_S79_L001_R1_001_preprocessed.fastq.gz

431.86 MB

Salmon Quant

LEE595A80_S79_L001_R1_001_preprocessed_tpm.txt.gz

134.04 kB

salmon_output

Directory

LEE595A80_S79_L001_R1_001_preprocessed_expressions.txt.gz

241.75 kB

LEE595A80_S79_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.71 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A80_S79_L001_R1_001_preprocessed.sf

1.49 MB

BBDuk (single-end)

LEE595A80_S79_L001_R1_001_preprocessed.fastq.gz

358.00 MB

fastqc

Directory

LEE595A80_S79_L001_R1_001_statistics.txt.gz

480 B

STAR

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

105.15 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam

383.33 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam.bai

2.77 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.19 MB

STAR

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam

20.07 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.10 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

405.80 MB

STAR

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

405.80 MB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.10 kB

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.bam

20.06 MB

QoRTs QC

qorts_report.zip

5.78 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

STAR

LEE595A80_S79_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

10.85 MB

LEE595A80_S79_L001_R1_001_preprocessed.bam

562.05 MB

LEE595A80_S79_L001_R1_001_preprocessed.bam.bai

3.72 MB

LEE595A80_S79_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A80_S79_L001_R1_001_preprocessed_SJ.out.tab

1.24 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A80_S79_L001_R1_001_preprocessed_downsampled.fastq.gz

431.09 MB

Samtools idxstats

idxstat_report.txt

20.33 kB

HTSeq-count (CPM)

LEE595A80_S79_L001_R1_001_preprocessed_rc.tab.gz

114.69 kB

LEE595A80_S79_L001_R1_001_preprocessed_expressions.txt.gz

297.49 kB

LEE595A80_S79_L001_R1_001_preprocessed_cpm.tab.gz

148.88 kB

LEE595A80_S79_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.20 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A80_S79_L001_R1_001.fastq.gz

488.84 MB

stderr.txt

1.09 kB

LEE595A80_S79_L001_R1_001_fastqc.zip

470.30 kB

P7_Stau2KD_2b

HTSeq-count (CPM)

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

151.00 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.91 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

302.81 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.32 kB

BBDuk (single-end)

LEE595A79_S77_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

LEE595A79_S77_L001_R1_001_preprocessed.fastq.gz

468.41 MB

BBDuk (single-end)

fastqc

Directory

LEE595A79_S77_L001_R1_001_preprocessed.fastq.gz

468.44 MB

LEE595A79_S77_L001_R1_001_statistics.txt.gz

134 B

Salmon Quant

salmon_output

Directory

LEE595A79_S77_L001_R1_001_preprocessed_expressions.txt.gz

241.64 kB

LEE595A79_S77_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A79_S77_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.55 kB

LEE595A79_S77_L001_R1_001_preprocessed_tpm.txt.gz

133.87 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.fastq.gz

467.81 MB

BBDuk (single-end)

LEE595A79_S77_L001_R1_001_statistics.txt.gz

472 B

fastqc

Directory

LEE595A79_S77_L001_R1_001_preprocessed.fastq.gz

371.75 MB

STAR

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam

411.45 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

137.42 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.20 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam.bai

2.86 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.86 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam

23.37 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

439.26 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam

23.37 MB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.86 kB

LEE595A79_S77_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

439.26 MB

Samtools idxstats

idxstat_report.txt

20.33 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.84 MB

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

STAR

LEE595A79_S77_L001_R1_001_preprocessed_SJ.out.tab

1.26 MB

LEE595A79_S77_L001_R1_001_preprocessed.bam

622.34 MB

LEE595A79_S77_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A79_S77_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

11.63 MB

LEE595A79_S77_L001_R1_001_preprocessed.bam.bai

3.84 MB

HTSeq-count (CPM)

LEE595A79_S77_L001_R1_001_preprocessed_cpm.tab.gz

150.14 kB

LEE595A79_S77_L001_R1_001_preprocessed_HTseq_rc.txt.gz

115.32 kB

LEE595A79_S77_L001_R1_001_preprocessed_expressions.txt.gz

298.96 kB

LEE595A79_S77_L001_R1_001_preprocessed_rc.tab.gz

114.79 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A79_S77_L001_R1_001.fastq.gz

531.51 MB

stderr.txt

1.09 kB

LEE595A79_S77_L001_R1_001_fastqc.zip

470.34 kB

P0_WT_3a

HTSeq-count (CPM)

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.31 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.39 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

297.64 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.77 kB

BBDuk (single-end)

fastqc

Directory

LEE595A53_S49_L001_R1_001_preprocessed.fastq.gz

310.90 MB

LEE595A53_S49_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

fastqc

Directory

LEE595A53_S49_L001_R1_001_preprocessed.fastq.gz

310.92 MB

LEE595A53_S49_L001_R1_001_statistics.txt.gz

135 B

Salmon Quant

LEE595A53_S49_L001_R1_001_preprocessed.sf

1.49 MB

LEE595A53_S49_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

211.34 kB

salmon_output

Directory

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A53_S49_L001_R1_001_preprocessed_expressions.txt.gz

242.49 kB

LEE595A53_S49_L001_R1_001_preprocessed_tpm.txt.gz

134.62 kB

STAR

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam.bai

2.77 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.25 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

44.15 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam

308.11 MB

STAR

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

286.26 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam

19.20 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.16 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.16 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.bam

19.20 MB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A53_S49_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

286.26 MB

STAR

LEE595A53_S49_L001_R1_001_preprocessed.bam

415.47 MB

LEE595A53_S49_L001_R1_001_preprocessed.bam.bai

3.44 MB

LEE595A53_S49_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.02 MB

LEE595A53_S49_L001_R1_001_preprocessed_SJ.out.tab

1.28 MB

LEE595A53_S49_L001_R1_001_preprocessed_stats.txt

1.81 kB

QoRTs QC

qorts_report.zip

5.79 MB

qorts_output

Directory

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A53_S49_L001_R1_001_preprocessed_downsampled.fastq.gz

310.34 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

HTSeq-count (CPM)

LEE595A53_S49_L001_R1_001_preprocessed_cpm.tab.gz

143.73 kB

LEE595A53_S49_L001_R1_001_preprocessed_expressions.txt.gz

289.87 kB

LEE595A53_S49_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.01 kB

LEE595A53_S49_L001_R1_001_preprocessed_rc.tab.gz

113.49 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A53_S49_L001_R1_001_fastqc.zip

469.69 kB

LEE595A53_S49_L001_R1_001.fastq.gz

350.55 MB

BBDuk (single-end)

fastqc

Directory

LEE595A53_S49_L001_R1_001_preprocessed.fastq.gz

279.21 MB

LEE595A53_S49_L001_R1_001_statistics.txt.gz

456 B

P35_Stau2KD_3a

HTSeq-count (CPM)

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_rc.tab.gz

104.03 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

117.07 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

104.88 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

252.81 kB

BBDuk (single-end)

LEE595A68_S65_L001_R1_001_preprocessed.fastq.gz

36.17 MB

fastqc

Directory

LEE595A68_S65_L001_R1_001_statistics.txt.gz

384 B

STAR

LEE595A68_S65_L001_R1_001_preprocessed.bam

51.70 MB

LEE595A68_S65_L001_R1_001_preprocessed_SJ.out.tab

411.76 kB

LEE595A68_S65_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

1.24 MB

LEE595A68_S65_L001_R1_001_preprocessed.bam.bai

2.63 MB

LEE595A68_S65_L001_R1_001_preprocessed.bw

2.00 MB

LEE595A68_S65_L001_R1_001_preprocessed_stats.txt

1.80 kB

HTSeq-count (CPM)

LEE595A68_S65_L001_R1_001_preprocessed_cpm.tab.gz

116.08 kB

LEE595A68_S65_L001_R1_001_preprocessed_HTseq_rc.txt.gz

104.17 kB

LEE595A68_S65_L001_R1_001_preprocessed_rc.tab.gz

103.37 kB

LEE595A68_S65_L001_R1_001_preprocessed_expressions.txt.gz

252.22 kB

BBDuk (single-end)

fastqc

Directory

LEE595A68_S65_L001_R1_001_preprocessed.fastq.gz

40.04 MB

LEE595A68_S65_L001_R1_001_statistics.txt.gz

133 B

BBDuk (single-end)

fastqc

Directory

LEE595A68_S65_L001_R1_001_statistics.txt.gz

133 B

LEE595A68_S65_L001_R1_001_preprocessed.fastq.gz

40.03 MB

HTSeq-count (CPM)

LEE595A68_S65_L001_R1_001_preprocessed_cpm.tab.gz

118.15 kB

LEE595A68_S65_L001_R1_001_preprocessed_rc.tab.gz

104.56 kB

LEE595A68_S65_L001_R1_001_preprocessed_HTseq_rc.txt.gz

105.39 kB

LEE595A68_S65_L001_R1_001_preprocessed_expressions.txt.gz

254.58 kB

Salmon Quant

salmon_output

Directory

LEE595A68_S65_L001_R1_001_preprocessed.sf

1.47 MB

LEE595A68_S65_L001_R1_001_preprocessed_expressions.txt.gz

225.30 kB

LEE595A68_S65_L001_R1_001_preprocessed_tpm.txt.gz

120.41 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A68_S65_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

189.88 kB

STAR

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_SJ.out.tab

399.21 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_stats.txt

1.80 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam

47.76 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

5.07 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam.bai

2.28 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bw

1.77 MB

STAR

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam

4.18 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_SJ.out.tab

2.63 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam.bai

264 B

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.17 MB

STAR

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam.bai

264 B

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.bam

4.17 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

35.17 MB

LEE595A68_S65_L001_R1_001_preprocessed_downsampled_SJ.out.tab

2.63 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

LEE595A68_S65_L001_R1_001_preprocessed_downsampled.fastq.gz

39.96 MB

fastqc

Directory

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.41 MB

Samtools idxstats

idxstat_report.txt

20.18 kB

STAR

LEE595A68_S65_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

1.26 MB

LEE595A68_S65_L001_R1_001_preprocessed.bam.bai

2.63 MB

LEE595A68_S65_L001_R1_001_preprocessed.bam

61.13 MB

LEE595A68_S65_L001_R1_001_preprocessed.bw

2.00 MB

LEE595A68_S65_L001_R1_001_preprocessed_stats.txt

1.80 kB

LEE595A68_S65_L001_R1_001_preprocessed_SJ.out.tab

413.98 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A68_S65_L001_R1_001.fastq.gz

45.88 MB

LEE595A68_S65_L001_R1_001_fastqc.zip

488.93 kB

HTSeq-count (CPM)

LEE595A68_S65_L001_R1_001_preprocessed_rc.tab.gz

103.42 kB

LEE595A68_S65_L001_R1_001_preprocessed_cpm.tab.gz

115.89 kB

LEE595A68_S65_L001_R1_001_preprocessed_HTseq_rc.txt.gz

104.22 kB

LEE595A68_S65_L001_R1_001_preprocessed_expressions.txt.gz

249.25 kB

BBDuk (single-end)

LEE595A68_S65_L001_R1_001_statistics.txt.gz

384 B

fastqc

Directory

LEE595A68_S65_L001_R1_001_preprocessed.fastq.gz

36.11 MB

P7_Stau2KD_3a

HTSeq-count (CPM)

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

301.45 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.02 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.62 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

149.41 kB

BBDuk (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001_statistics.txt.gz

134 B

LEE595A62_S59_L001_R1_001_preprocessed.fastq.gz

341.86 MB

BBDuk (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001_statistics.txt.gz

134 B

LEE595A62_S59_L001_R1_001_preprocessed.fastq.gz

341.86 MB

Salmon Quant

LEE595A62_S59_L001_R1_001_preprocessed_expressions.txt.gz

241.76 kB

salmon_output

Directory

LEE595A62_S59_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

209.85 kB

LEE595A62_S59_L001_R1_001_preprocessed_tpm.txt.gz

133.88 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A62_S59_L001_R1_001_preprocessed.sf

1.48 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.fastq.gz

341.24 MB

STAR

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam

339.69 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam.bai

2.72 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

49.20 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.19 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

315.23 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.32 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam

20.89 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

315.23 MB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled_SJ.out.tab

7.32 kB

LEE595A62_S59_L001_R1_001_preprocessed_downsampled.bam

20.89 MB

STAR

LEE595A62_S59_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.45 MB

LEE595A62_S59_L001_R1_001_preprocessed.bam.bai

3.40 MB

LEE595A62_S59_L001_R1_001_preprocessed.bam

457.83 MB

LEE595A62_S59_L001_R1_001_preprocessed_SJ.out.tab

1.18 MB

LEE595A62_S59_L001_R1_001_preprocessed_stats.txt

1.81 kB

QoRTs QC

qorts_output

Directory

qorts_report.zip

5.76 MB

Samtools idxstats

idxstat_report.txt

20.31 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

HTSeq-count (CPM)

LEE595A62_S59_L001_R1_001_preprocessed_rc.tab.gz

113.79 kB

LEE595A62_S59_L001_R1_001_preprocessed_cpm.tab.gz

146.58 kB

LEE595A62_S59_L001_R1_001_preprocessed_expressions.txt.gz

293.84 kB

LEE595A62_S59_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.33 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001.fastq.gz

386.71 MB

stderr.txt

1.09 kB

LEE595A62_S59_L001_R1_001_fastqc.zip

470.62 kB

BBDuk (single-end)

fastqc

Directory

LEE595A62_S59_L001_R1_001_preprocessed.fastq.gz

305.56 MB

LEE595A62_S59_L001_R1_001_statistics.txt.gz

474 B

P0_Stau2KD_3a

HTSeq-count (CPM)

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.06 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

143.17 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

291.53 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.49 kB

BBDuk (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001_preprocessed.fastq.gz

265.08 MB

LEE595A56_S52_L001_R1_001_statistics.txt.gz

457 B

BBDuk (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001_statistics.txt.gz

134 B

LEE595A56_S52_L001_R1_001_preprocessed.fastq.gz

292.85 MB

BBDuk (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001_preprocessed.fastq.gz

292.85 MB

LEE595A56_S52_L001_R1_001_statistics.txt.gz

134 B

Salmon Quant

salmon_output

Directory

LEE595A56_S52_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.11 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A56_S52_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A56_S52_L001_R1_001_preprocessed_tpm.txt.gz

132.28 kB

LEE595A56_S52_L001_R1_001_preprocessed_expressions.txt.gz

239.71 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.fastq.gz

292.29 MB

STAR

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.17 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam.bai

2.87 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

37.66 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam

298.68 MB

STAR

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam

16.99 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.64 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

270.80 MB

STAR

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

270.80 MB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.64 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A56_S52_L001_R1_001_preprocessed_downsampled.bam

17.00 MB

STAR

LEE595A56_S52_L001_R1_001_preprocessed.bam.bai

3.53 MB

LEE595A56_S52_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

5.57 MB

LEE595A56_S52_L001_R1_001_preprocessed.bam

399.39 MB

LEE595A56_S52_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A56_S52_L001_R1_001_preprocessed_SJ.out.tab

1.19 MB

LEE595A56_S52_L001_R1_001_preprocessed.bw

8.89 MB

QoRTs QC

qorts_report.zip

5.77 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.32 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

FASTQ file (single-end)

fastqc

Directory

LEE595A56_S52_L001_R1_001.fastq.gz

328.64 MB

LEE595A56_S52_L001_R1_001_fastqc.zip

467.68 kB

stderr.txt

1.09 kB

HTSeq-count (CPM)

LEE595A56_S52_L001_R1_001_preprocessed_cpm.tab.gz

140.26 kB

LEE595A56_S52_L001_R1_001_preprocessed_rc.tab.gz

112.41 kB

LEE595A56_S52_L001_R1_001_preprocessed_expressions.txt.gz

285.56 kB

LEE595A56_S52_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.95 kB

P0_Stau2KD_2a

HTSeq-count (CPM)

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

113.69 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.11 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

288.92 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

141.53 kB

BBDuk (single-end)

LEE595A55_S51_L001_R1_001_preprocessed.fastq.gz

215.45 MB

fastqc

Directory

LEE595A55_S51_L001_R1_001_statistics.txt.gz

454 B

BBDuk (single-end)

LEE595A55_S51_L001_R1_001_preprocessed.fastq.gz

243.31 MB

fastqc

Directory

LEE595A55_S51_L001_R1_001_statistics.txt.gz

135 B

BBDuk (single-end)

LEE595A55_S51_L001_R1_001_statistics.txt.gz

135 B

fastqc

Directory

LEE595A55_S51_L001_R1_001_preprocessed.fastq.gz

243.30 MB

Salmon Quant

LEE595A55_S51_L001_R1_001_preprocessed_tpm.txt.gz

132.35 kB

salmon_output

Directory

LEE595A55_S51_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A55_S51_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.99 kB

LEE595A55_S51_L001_R1_001_preprocessed_expressions.txt.gz

239.82 kB

STAR

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam

239.83 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.09 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam.bai

2.69 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

39.34 MB

STAR

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam

16.05 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

223.05 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.21 kB

STAR

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_SJ.out.tab

6.21 kB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.bam

16.06 MB

LEE595A55_S51_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

223.05 MB

STAR

LEE595A55_S51_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

4.90 MB

LEE595A55_S51_L001_R1_001_preprocessed.bam.bai

3.42 MB

LEE595A55_S51_L001_R1_001_preprocessed.bam

330.20 MB

LEE595A55_S51_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A55_S51_L001_R1_001_preprocessed_SJ.out.tab

1.12 MB

LEE595A55_S51_L001_R1_001_preprocessed.bw

6.88 MB

FASTQ file (single-end)

stderr.txt

1.09 kB

fastqc

Directory

LEE595A55_S51_L001_R1_001.fastq.gz

275.26 MB

LEE595A55_S51_L001_R1_001_fastqc.zip

469.87 kB

QoRTs QC

qorts_report.zip

5.68 MB

qorts_output

Directory

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A55_S51_L001_R1_001_preprocessed_downsampled.fastq.gz

242.87 MB

Samtools idxstats

idxstat_report.txt

20.28 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

HTSeq-count (CPM)

LEE595A55_S51_L001_R1_001_preprocessed_rc.tab.gz

112.11 kB

LEE595A55_S51_L001_R1_001_preprocessed_expressions.txt.gz

283.33 kB

LEE595A55_S51_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.69 kB

LEE595A55_S51_L001_R1_001_preprocessed_cpm.tab.gz

139.68 kB

P7_WT_1a

HTSeq-count (CPM)

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

294.03 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.00 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.60 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

144.57 kB

BBDuk (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_statistics.txt.gz

135 B

LEE595A57_S53_L001_R1_001_preprocessed.fastq.gz

264.43 MB

BBDuk (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_statistics.txt.gz

135 B

LEE595A57_S53_L001_R1_001_preprocessed.fastq.gz

264.45 MB

Salmon Quant

salmon_output

Directory

LEE595A57_S53_L001_R1_001_preprocessed_expressions.txt.gz

240.84 kB

LEE595A57_S53_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.64 kB

LEE595A57_S53_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A57_S53_L001_R1_001_preprocessed_tpm.txt.gz

133.11 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.fastq.gz

263.95 MB

STAR

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam.bai

2.68 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.09 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

33.45 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam

271.13 MB

STAR

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

243.36 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.95 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam

16.52 MB

STAR

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A57_S53_L001_R1_001_preprocessed_downsampled.bam

16.52 MB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.95 kB

LEE595A57_S53_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

243.36 MB

STAR

LEE595A57_S53_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.35 MB

LEE595A57_S53_L001_R1_001_preprocessed.bw

5.75 MB

LEE595A57_S53_L001_R1_001_preprocessed_SJ.out.tab

1.10 MB

LEE595A57_S53_L001_R1_001_preprocessed.bam

357.66 MB

LEE595A57_S53_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A57_S53_L001_R1_001_preprocessed.bam.bai

3.31 MB

QoRTs QC

qorts_report.zip

5.69 MB

qorts_output

Directory

Samtools idxstats

idxstat_report.txt

20.30 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

HTSeq-count (CPM)

LEE595A57_S53_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.08 kB

LEE595A57_S53_L001_R1_001_preprocessed_cpm.tab.gz

140.42 kB

LEE595A57_S53_L001_R1_001_preprocessed_expressions.txt.gz

285.78 kB

LEE595A57_S53_L001_R1_001_preprocessed_rc.tab.gz

112.56 kB

FASTQ file (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_fastqc.zip

474.06 kB

LEE595A57_S53_L001_R1_001.fastq.gz

298.99 MB

stderr.txt

1.09 kB

BBDuk (single-end)

fastqc

Directory

LEE595A57_S53_L001_R1_001_preprocessed.fastq.gz

238.97 MB

LEE595A57_S53_L001_R1_001_statistics.txt.gz

456 B

P0_WT_1b

HTSeq-count (CPM)

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.96 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.37 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

297.73 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

147.64 kB

BBDuk (single-end)

LEE595A69_S66_L001_R1_001_preprocessed.fastq.gz

357.01 MB

LEE595A69_S66_L001_R1_001_statistics.txt.gz

134 B

fastqc

Directory

BBDuk (single-end)

fastqc

Directory

LEE595A69_S66_L001_R1_001_preprocessed.fastq.gz

357.01 MB

LEE595A69_S66_L001_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A69_S66_L001_R1_001_preprocessed_rc.tab.gz

113.45 kB

LEE595A69_S66_L001_R1_001_preprocessed_expressions.txt.gz

291.88 kB

LEE595A69_S66_L001_R1_001_preprocessed_cpm.tab.gz

144.26 kB

LEE595A69_S66_L001_R1_001_preprocessed_HTseq_rc.txt.gz

113.96 kB

Salmon Quant

LEE595A69_S66_L001_R1_001_preprocessed_expressions.txt.gz

239.92 kB

salmon_output

Directory

LEE595A69_S66_L001_R1_001_preprocessed_tpm.txt.gz

132.54 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A69_S66_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.45 kB

LEE595A69_S66_L001_R1_001_preprocessed.sf

1.48 MB

STAR

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.05 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam

329.93 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

74.69 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam.bai

2.86 MB

STAR

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

339.05 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam

13.39 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.40 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.40 kB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.bam

13.39 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

339.05 MB

LEE595A69_S66_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

STAR

LEE595A69_S66_L001_R1_001_preprocessed.bam

472.78 MB

LEE595A69_S66_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A69_S66_L001_R1_001_preprocessed.bam.bai

3.72 MB

LEE595A69_S66_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.73 MB

LEE595A69_S66_L001_R1_001_preprocessed.bw

8.16 MB

LEE595A69_S66_L001_R1_001_preprocessed_SJ.out.tab

1.08 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

QoRTs QC

qorts_report.zip

5.74 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A69_S66_L001_R1_001_preprocessed_downsampled.fastq.gz

356.36 MB

FASTQ file (single-end)

LEE595A69_S66_L001_R1_001.fastq.gz

402.63 MB

fastqc

Directory

LEE595A69_S66_L001_R1_001_fastqc.zip

470.82 kB

stderr.txt

1.09 kB

BBDuk (single-end)

fastqc

Directory

LEE595A69_S66_L001_R1_001_preprocessed.fastq.gz

303.38 MB

LEE595A69_S66_L001_R1_001_statistics.txt.gz

479 B

P0_WT_2b

HTSeq-count (CPM)

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.52 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_rc.tab.gz

114.93 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

149.33 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

300.43 kB

BBDuk (single-end)

fastqc

Directory

LEE595A70_S68_L001_R1_001_preprocessed.fastq.gz

357.33 MB

LEE595A70_S68_L001_R1_001_statistics.txt.gz

134 B

BBDuk (single-end)

fastqc

Directory

LEE595A70_S68_L001_R1_001_preprocessed.fastq.gz

357.32 MB

LEE595A70_S68_L001_R1_001_statistics.txt.gz

134 B

HTSeq-count (CPM)

LEE595A70_S68_L001_R1_001_preprocessed_cpm.tab.gz

145.64 kB

LEE595A70_S68_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.09 kB

LEE595A70_S68_L001_R1_001_preprocessed_rc.tab.gz

113.59 kB

LEE595A70_S68_L001_R1_001_preprocessed_expressions.txt.gz

293.11 kB

Salmon Quant

salmon_output

Directory

LEE595A70_S68_L001_R1_001_preprocessed_expressions.txt.gz

240.66 kB

LEE595A70_S68_L001_R1_001_preprocessed_tpm.txt.gz

133.10 kB

LEE595A70_S68_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A70_S68_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

207.95 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.fastq.gz

356.66 MB

STAR

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

68.66 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1.02 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam.bai

2.83 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam

316.62 MB

STAR

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_SJ.out.tab

4.47 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

342.40 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam

10.33 MB

STAR

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_SJ.out.tab

4.47 kB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled.bam

10.33 MB

LEE595A70_S68_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

342.40 MB

QoRTs QC

qorts_report.zip

5.70 MB

qorts_output

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

20.32 kB

STAR

LEE595A70_S68_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.70 MB

LEE595A70_S68_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A70_S68_L001_R1_001_preprocessed.bam.bai

3.69 MB

LEE595A70_S68_L001_R1_001_preprocessed_SJ.out.tab

1.06 MB

LEE595A70_S68_L001_R1_001_preprocessed.bam

452.84 MB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

1.09 kB

LEE595A70_S68_L001_R1_001.fastq.gz

401.68 MB

LEE595A70_S68_L001_R1_001_fastqc.zip

458.59 kB

BBDuk (single-end)

fastqc

Directory

LEE595A70_S68_L001_R1_001_preprocessed.fastq.gz

308.70 MB

LEE595A70_S68_L001_R1_001_statistics.txt.gz

457 B

P0_Stau2KD_1b

HTSeq-count (CPM)

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

114.28 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_rc.tab.gz

113.71 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

144.15 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

293.26 kB

HTSeq-count (CPM)

LEE595A72_S70_L001_R1_001_preprocessed_cpm.tab.gz

141.63 kB

LEE595A72_S70_L001_R1_001_preprocessed_rc.tab.gz

112.43 kB

LEE595A72_S70_L001_R1_001_preprocessed_HTseq_rc.txt.gz

112.99 kB

LEE595A72_S70_L001_R1_001_preprocessed_expressions.txt.gz

286.79 kB

BBDuk (single-end)

fastqc

Directory

LEE595A72_S70_L001_R1_001_statistics.txt.gz

135 B

LEE595A72_S70_L001_R1_001_preprocessed.fastq.gz

283.97 MB

BBDuk (single-end)

fastqc

Directory

LEE595A72_S70_L001_R1_001_statistics.txt.gz

135 B

LEE595A72_S70_L001_R1_001_preprocessed.fastq.gz

283.97 MB

Salmon Quant

salmon_output

Directory

LEE595A72_S70_L001_R1_001_preprocessed.sf

1.48 MB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A72_S70_L001_R1_001_preprocessed_expressions.txt.gz

238.03 kB

LEE595A72_S70_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

204.62 kB

LEE595A72_S70_L001_R1_001_preprocessed_tpm.txt.gz

130.81 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.fastq.gz

283.46 MB

BBDuk (single-end)

fastqc

Directory

LEE595A72_S70_L001_R1_001_preprocessed.fastq.gz

243.01 MB

LEE595A72_S70_L001_R1_001_statistics.txt.gz

467 B

STAR

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_SJ.out.tab

891.57 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam

259.61 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam.bai

2.70 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

56.76 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

272.18 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam

8.25 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.14 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

STAR

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.14 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_stats.txt

1.78 kB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A72_S70_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

272.18 MB

LEE595A72_S70_L001_R1_001_preprocessed_downsampled.bam

8.25 MB

FASTQ file (single-end)

LEE595A72_S70_L001_R1_001.fastq.gz

320.28 MB

fastqc

Directory

LEE595A72_S70_L001_R1_001_fastqc.zip

469.46 kB

stderr.txt

1.09 kB

Samtools idxstats

idxstat_report.txt

20.30 kB

QoRTs QC

qorts_report.zip

5.64 MB

qorts_output

Directory

MultiQC

multiqc_report.html

1.23 MB

multiqc_data

Directory

STAR

LEE595A72_S70_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A72_S70_L001_R1_001_preprocessed.bam

369.32 MB

LEE595A72_S70_L001_R1_001_preprocessed.bw

5.99 MB

LEE595A72_S70_L001_R1_001_preprocessed.bam.bai

3.53 MB

LEE595A72_S70_L001_R1_001_preprocessed_SJ.out.tab

908.97 kB

LEE595A72_S70_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

6.02 MB

P0_WT_3b

HTSeq-count (CPM)

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_expressions.txt.gz

301.66 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_rc.tab.gz

115.25 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_cpm.tab.gz

150.39 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_HTseq_rc.txt.gz

115.87 kB

BBDuk (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_statistics.txt.gz

135 B

LEE595A71_S69_L001_R1_001_preprocessed.fastq.gz

404.19 MB

BBDuk (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_preprocessed.fastq.gz

404.23 MB

LEE595A71_S69_L001_R1_001_statistics.txt.gz

135 B

Salmon Quant

salmon_output

Directory

LEE595A71_S69_L001_R1_001_preprocessed.sf

1.48 MB

LEE595A71_S69_L001_R1_001_preprocessed_transcripts_tpm.txt.gz

208.06 kB

tx2gene_Rn_Ens100_Q_v3.10k_0.01score.extended.txt

1.94 MB

LEE595A71_S69_L001_R1_001_preprocessed_expressions.txt.gz

240.65 kB

LEE595A71_S69_L001_R1_001_preprocessed_tpm.txt.gz

133.25 kB

Subsample FASTQ (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.fastq.gz

403.54 MB

BBDuk (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_statistics.txt.gz

473 B

LEE595A71_S69_L001_R1_001_preprocessed.fastq.gz

336.76 MB

STAR

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam

346.77 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_SJ.out.tab

1021.04 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

95.88 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam.bai

2.89 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_stats.txt

1.81 kB

STAR

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

388.67 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam

11.01 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.25 kB

STAR

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_SJ.out.tab

5.25 kB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam.bai

336 B

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

388.67 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled.bam

11.01 MB

LEE595A71_S69_L001_R1_001_preprocessed_downsampled_stats.txt

1.79 kB

HTSeq-count (CPM)

LEE595A71_S69_L001_R1_001_preprocessed_HTseq_rc.txt.gz

114.62 kB

LEE595A71_S69_L001_R1_001_preprocessed_rc.tab.gz

114.13 kB

LEE595A71_S69_L001_R1_001_preprocessed_cpm.tab.gz

148.26 kB

LEE595A71_S69_L001_R1_001_preprocessed_expressions.txt.gz

295.99 kB

STAR

LEE595A71_S69_L001_R1_001_preprocessed.bam.bai

3.81 MB

LEE595A71_S69_L001_R1_001_preprocessed_stats.txt

1.81 kB

LEE595A71_S69_L001_R1_001_preprocessed_unmapped.out.mate1.fastq.gz

7.96 MB

LEE595A71_S69_L001_R1_001_preprocessed.bam

511.65 MB

LEE595A71_S69_L001_R1_001_preprocessed_SJ.out.tab

1.04 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.23 MB

Samtools idxstats

idxstat_report.txt

20.33 kB

QoRTs QC

qorts_report.zip

5.77 MB

qorts_output

Directory

FASTQ file (single-end)

fastqc

Directory

LEE595A71_S69_L001_R1_001_fastqc.zip

463.47 kB

LEE595A71_S69_L001_R1_001.fastq.gz

455.05 MB

stderr.txt

1.09 kB