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Folder iconPTBP1_CLIP_variants_comparison_analysis

Rahul Arora
Nov. 5, 2019
A collection focusing upon the analysis of PTBP1 protein for its different CLIP variants such as eCLIP, iCLIP, goldCLIP etc and to try to understand how these methods generate different and/or similar results based on the differences in their wet lab protocols. An attempt to understand the differences between them in terms of sensitivity and specificity.

4SU-iCLIP2_PTBP1_merged_replicates

iCount annotate
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_annotated.bed.gz
49.37 MB
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_annotated.bedgraph
195.47 MB
K-mers
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna.tar.gz
8.79 MB
Paraclu
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_peaks.bed.gz
501.20 kB
iCount RNA-maps
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna.tar.gz
1.88 MB
iCount group
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna.bed.gz
41.25 MB
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna.bedgraph
195.47 MB
4SU-iCLIP2_PTBP1_merged_replicates_grouped_reads.bed.gz
46.09 MB
iCount summary
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_summary_type.tsv
447 B
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_summary_gene.tsv
2.51 MB
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_summary_subtype.tsv
1.02 kB

PTBP1_Hela_WT_20110427_LUjh27

Paraclu
ptbp1-hela-wt-20110427-lujh27_trimmed_single_peaks.bed.gz
102.75 kB
STAR
ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
11.36 MB
ptbp1-hela-wt-20110427-lujh27_trimmed.bw
91.82 kB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai
3.80 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab
185.52 kB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam
166.03 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt
1.80 kB
FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27.fastq.gz
85.32 MB
fastqc
Directory
stderr.txt
1.17 kB
ptbp1-hela-wt-20110427-lujh27_fastqc.zip
335.05 kB
K-mers
ptbp1-hela-wt-20110427-lujh27_trimmed_single.tar.gz
3.04 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz
86.47 MB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27_trimmed_singleAndMulti.bed.gz
12.71 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_reads_single.bed.gz
8.64 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_single.bed.gz
8.58 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_single.bedgraph
40.72 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_skipped.bam
3.52 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27_trimmed_single.tar.gz
894.70 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_gene.tsv
1.42 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_type.tsv
431 B
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_subtype.tsv
1014 B

irCLIP_group_analysis

Paraclu
irCLIP_group_analysis_grouped_cdna_peaks.bed.gz
5.85 MB
iCount summary
irCLIP_group_analysis_grouped_cdna_summary_gene.tsv
3.21 MB
irCLIP_group_analysis_grouped_cdna_summary_type.tsv
456 B
irCLIP_group_analysis_grouped_cdna_summary_subtype.tsv
1.04 kB
iCount RNA-maps
irCLIP_group_analysis_grouped_cdna.tar.gz
5.40 MB
iCount annotate
irCLIP_group_analysis_grouped_cdna_annotated.bed.gz
289.31 MB
irCLIP_group_analysis_grouped_cdna_annotated.bedgraph
1.18 GB
iCount group
irCLIP_group_analysis_grouped_cdna.bed.gz
254.72 MB
irCLIP_group_analysis_grouped_reads.bed.gz
256.73 MB
irCLIP_group_analysis_grouped_cdna.bedgraph
1.18 GB

Copy of PTBP1_Hela_WT_20110427_LUjh27_3

PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz
417.56 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz
914.75 kB
Paraclu
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz
91.16 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv
1.43 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv
1012 B
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz
8.30 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph
38.99 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam
3.32 kB
STAR
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.76 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
142.46 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw
91.05 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
report.txt
666 B
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3.fastq.gz
81.06 MB
ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip
335.37 kB
stderr.txt
1.26 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
19.89 kB
demux_nomatch_fastqc.zip
531.41 kB
stderr.txt
43 B

PTBP1_Hela_s4_irCLIP

iCount RNA-maps
ptbp1-hela-s4-irclip_trimmed_single.tar.gz
2.18 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.05 kB
ptbp1-hela-s4-irclip_fastqc.zip
280.38 kB
ptbp1-hela-s4-irclip.fastq.gz
445.34 MB
K-mers
ptbp1-hela-s4-irclip.tar.gz
563.11 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
656 B
ptbp1-hela-s4-irclip_trimmed.fastq.gz
454.28 MB
STAR
ptbp1-hela-s4-irclip_trimmed.bam
795.36 MB
ptbp1-hela-s4-irclip_trimmed.bam.bai
2.40 MB
ptbp1-hela-s4-irclip_trimmed_unmapped.out.mate1.fastq.gz
164.48 MB
ptbp1-hela-s4-irclip_trimmed_SJ.out.tab
2.93 MB
ptbp1-hela-s4-irclip_trimmed_stats.txt
1.82 kB
iCount xlsites
ptbp1-hela-s4-irclip_trimmed_singleAndMulti.bed.gz
67.56 MB
ptbp1-hela-s4-irclip_trimmed_skipped.bam
13.69 kB
ptbp1-hela-s4-irclip_trimmed_single.bedgraph
186.78 MB
ptbp1-hela-s4-irclip_trimmed_reads_single.bed.gz
41.04 MB
ptbp1-hela-s4-irclip_trimmed_single.bed.gz
40.61 MB
iCount summary
ptbp1-hela-s4-irclip_trimmed_single_summary_type.tsv
445 B
ptbp1-hela-s4-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
ptbp1-hela-s4-irclip_trimmed_single_summary_gene.tsv
2.26 MB
Paraclu
ptbp1-hela-s4-irclip_trimmed_single_peaks.bed.gz
287.29 kB

PTBP1_Hela_s5_irCLIP

iCount xlsites
ptbp1-hela-s5-irclip_trimmed_skipped.bam
13.21 kB
ptbp1-hela-s5-irclip_trimmed_single.bed.gz
41.96 MB
ptbp1-hela-s5-irclip_trimmed_singleAndMulti.bed.gz
70.17 MB
ptbp1-hela-s5-irclip_trimmed_single.bedgraph
194.00 MB
ptbp1-hela-s5-irclip_trimmed_reads_single.bed.gz
42.34 MB
K-mers
ptbp1-hela-s5-irclip.tar.gz
554.61 kB
FASTQ file (single-end)
ptbp1-hela-s5-irclip.fastq.gz
447.83 MB
fastqc
Directory
stderr.txt
1.05 kB
ptbp1-hela-s5-irclip_fastqc.zip
278.34 kB
iCount summary
ptbp1-hela-s5-irclip_trimmed_single_summary_type.tsv
445 B
ptbp1-hela-s5-irclip_trimmed_single_summary_gene.tsv
2.27 MB
ptbp1-hela-s5-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
iCount RNA-maps
ptbp1-hela-s5-irclip_trimmed_single.tar.gz
2.20 MB
Paraclu
ptbp1-hela-s5-irclip_trimmed_single_peaks.bed.gz
272.12 kB
Cutadapt (single-end)
report.txt
656 B
fastqc
Directory
ptbp1-hela-s5-irclip_trimmed.fastq.gz
456.08 MB
STAR
ptbp1-hela-s5-irclip_trimmed.bam.bai
2.38 MB
ptbp1-hela-s5-irclip_trimmed.bam
810.79 MB
ptbp1-hela-s5-irclip_trimmed_unmapped.out.mate1.fastq.gz
166.79 MB
ptbp1-hela-s5-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s5-irclip_trimmed_SJ.out.tab
2.97 MB

PTBP1_Hela_s7_irCLIP

Paraclu
ptbp1-hela-s7-irclip_trimmed_single_peaks.bed.gz
328.35 kB
K-mers
ptbp1-hela-s7-irclip.tar.gz
558.54 kB
FASTQ file (single-end)
ptbp1-hela-s7-irclip_fastqc.zip
280.87 kB
fastqc
Directory
stderr.txt
1.05 kB
ptbp1-hela-s7-irclip.fastq.gz
499.00 MB
iCount summary
ptbp1-hela-s7-irclip_trimmed_single_summary_gene.tsv
2.32 MB
ptbp1-hela-s7-irclip_trimmed_single_summary_type.tsv
446 B
ptbp1-hela-s7-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
656 B
ptbp1-hela-s7-irclip_trimmed.fastq.gz
508.10 MB
STAR
ptbp1-hela-s7-irclip_trimmed_unmapped.out.mate1.fastq.gz
185.99 MB
ptbp1-hela-s7-irclip_trimmed.bam.bai
2.41 MB
ptbp1-hela-s7-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s7-irclip_trimmed_SJ.out.tab
3.26 MB
ptbp1-hela-s7-irclip_trimmed.bam
897.81 MB
iCount xlsites
ptbp1-hela-s7-irclip_trimmed_skipped.bam
13.34 kB
ptbp1-hela-s7-irclip_trimmed_singleAndMulti.bed.gz
76.98 MB
ptbp1-hela-s7-irclip_trimmed_single.bed.gz
46.12 MB
ptbp1-hela-s7-irclip_trimmed_single.bedgraph
213.47 MB
ptbp1-hela-s7-irclip_trimmed_reads_single.bed.gz
46.56 MB
iCount RNA-maps
ptbp1-hela-s7-irclip_trimmed_single.tar.gz
2.30 MB

PTBP1_Hela_s8_irCLIP

iCount summary
ptbp1-hela-s8-irclip_trimmed_single_summary_type.tsv
447 B
ptbp1-hela-s8-irclip_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hela-s8-irclip_trimmed_single_summary_gene.tsv
2.40 MB
iCount RNA-maps
ptbp1-hela-s8-irclip_trimmed_single.tar.gz
2.54 MB
STAR
ptbp1-hela-s8-irclip_trimmed.bam
1.07 GB
ptbp1-hela-s8-irclip_trimmed_unmapped.out.mate1.fastq.gz
229.04 MB
ptbp1-hela-s8-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s8-irclip_trimmed_SJ.out.tab
4.01 MB
ptbp1-hela-s8-irclip_trimmed.bam.bai
2.52 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-s8-irclip.fastq.gz
620.92 MB
stderr.txt
1.05 kB
ptbp1-hela-s8-irclip_fastqc.zip
283.85 kB
K-mers
ptbp1-hela-s8-irclip.tar.gz
577.61 kB
Cutadapt (single-end)
report.txt
656 B
fastqc
Directory
ptbp1-hela-s8-irclip_trimmed.fastq.gz
632.90 MB
iCount xlsites
ptbp1-hela-s8-irclip_trimmed_singleAndMulti.bed.gz
91.43 MB
ptbp1-hela-s8-irclip_trimmed_skipped.bam
17.62 kB
ptbp1-hela-s8-irclip_trimmed_reads_single.bed.gz
55.88 MB
ptbp1-hela-s8-irclip_trimmed_single.bed.gz
55.29 MB
ptbp1-hela-s8-irclip_trimmed_single.bedgraph
256.07 MB
Paraclu
ptbp1-hela-s8-irclip_trimmed_single_peaks.bed.gz
499.43 kB

PTBP1_Hela_s3_irCLIP

iCount xlsites
ptbp1-hela-s3-irclip_trimmed_skipped.bam
11.61 kB
ptbp1-hela-s3-irclip_trimmed_singleAndMulti.bed.gz
59.26 MB
ptbp1-hela-s3-irclip_trimmed_single.bed.gz
35.53 MB
ptbp1-hela-s3-irclip_trimmed_single.bedgraph
163.04 MB
ptbp1-hela-s3-irclip_trimmed_reads_single.bed.gz
35.93 MB
Paraclu
ptbp1-hela-s3-irclip_trimmed_single_peaks.bed.gz
219.71 kB
K-mers
ptbp1-hela-s3-irclip.tar.gz
547.22 kB
FASTQ file (single-end)
ptbp1-hela-s3-irclip.fastq.gz
387.43 MB
fastqc
Directory
ptbp1-hela-s3-irclip_fastqc.zip
282.55 kB
stderr.txt
1.05 kB
iCount RNA-maps
ptbp1-hela-s3-irclip_trimmed_single.tar.gz
2.04 MB
Cutadapt (single-end)
report.txt
656 B
fastqc
Directory
ptbp1-hela-s3-irclip_trimmed.fastq.gz
395.18 MB
STAR
ptbp1-hela-s3-irclip_trimmed_unmapped.out.mate1.fastq.gz
143.17 MB
ptbp1-hela-s3-irclip_trimmed.bam
694.20 MB
ptbp1-hela-s3-irclip_trimmed.bam.bai
2.41 MB
ptbp1-hela-s3-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s3-irclip_trimmed_SJ.out.tab
2.56 MB
iCount summary
ptbp1-hela-s3-irclip_trimmed_single_summary_type.tsv
445 B
ptbp1-hela-s3-irclip_trimmed_single_summary_gene.tsv
2.20 MB
ptbp1-hela-s3-irclip_trimmed_single_summary_subtype.tsv
1.01 kB

PTBP1_Hela_s6_irCLIP

iCount RNA-maps
ptbp1-hela-s6-irclip_trimmed_single.tar.gz
2.25 MB
iCount xlsites
ptbp1-hela-s6-irclip_trimmed_singleAndMulti.bed.gz
72.52 MB
ptbp1-hela-s6-irclip_trimmed_single.bed.gz
43.61 MB
ptbp1-hela-s6-irclip_trimmed_skipped.bam
13.39 kB
ptbp1-hela-s6-irclip_trimmed_reads_single.bed.gz
44.08 MB
ptbp1-hela-s6-irclip_trimmed_single.bedgraph
200.89 MB
FASTQ file (single-end)
ptbp1-hela-s6-irclip.fastq.gz
481.46 MB
fastqc
Directory
stderr.txt
1.05 kB
ptbp1-hela-s6-irclip_fastqc.zip
280.07 kB
K-mers
ptbp1-hela-s6-irclip.tar.gz
563.63 kB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hela-s6-irclip_trimmed.fastq.gz
490.88 MB
report.txt
656 B
STAR
ptbp1-hela-s6-irclip_trimmed.bam
857.37 MB
ptbp1-hela-s6-irclip_trimmed.bam.bai
2.42 MB
ptbp1-hela-s6-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s6-irclip_trimmed_unmapped.out.mate1.fastq.gz
177.87 MB
ptbp1-hela-s6-irclip_trimmed_SJ.out.tab
3.13 MB
Paraclu
ptbp1-hela-s6-irclip_trimmed_single_peaks.bed.gz
325.41 kB
iCount summary
ptbp1-hela-s6-irclip_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hela-s6-irclip_trimmed_single_summary_type.tsv
447 B
ptbp1-hela-s6-irclip_trimmed_single_summary_gene.tsv
2.29 MB

irCLIP_PTBP1_data.fastq.gz

FASTQ file (single-end)
fastqc
Directory
irCLIP_PTBP1_data.fastq.gz
4.59 GB
stderr.txt
955 B
irCLIP_PTBP1_data_fastqc.zip
434.70 kB

PTBP1_Hela_s2_irCLIP

K-mers
ptbp1-hela-s2-irclip.tar.gz
522.79 kB
iCount RNA-maps
ptbp1-hela-s2-irclip_trimmed_single.tar.gz
1.83 MB
iCount summary
ptbp1-hela-s2-irclip_trimmed_single_summary_type.tsv
445 B
ptbp1-hela-s2-irclip_trimmed_single_summary_gene.tsv
2.12 MB
ptbp1-hela-s2-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-s2-irclip.fastq.gz
304.06 MB
ptbp1-hela-s2-irclip_fastqc.zip
278.97 kB
stderr.txt
1.05 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
656 B
ptbp1-hela-s2-irclip_trimmed.fastq.gz
309.80 MB
STAR
ptbp1-hela-s2-irclip_trimmed.bam
553.35 MB
ptbp1-hela-s2-irclip_trimmed_unmapped.out.mate1.fastq.gz
113.52 MB
ptbp1-hela-s2-irclip_trimmed.bam.bai
2.45 MB
ptbp1-hela-s2-irclip_trimmed_stats.txt
1.81 kB
ptbp1-hela-s2-irclip_trimmed_SJ.out.tab
2.06 MB
iCount xlsites
ptbp1-hela-s2-irclip_trimmed_singleAndMulti.bed.gz
48.42 MB
ptbp1-hela-s2-irclip_trimmed_single.bed.gz
28.86 MB
ptbp1-hela-s2-irclip_trimmed_skipped.bam
9.98 kB
ptbp1-hela-s2-irclip_trimmed_reads_single.bed.gz
29.15 MB
ptbp1-hela-s2-irclip_trimmed_single.bedgraph
132.37 MB
Paraclu
ptbp1-hela-s2-irclip_trimmed_single_peaks.bed.gz
132.96 kB

PTBP1_HEK293T__gold_CLIP_sample_2

iCount xlsites
ptbp1-hek293t-gold-clip-sample-2_trimmed_single.bed.gz
66.61 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_reads_single.bed.gz
77.55 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_skipped.bam
2.93 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_singleAndMulti.bed.gz
207.08 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_single.bedgraph
239.62 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
ptbp1-hek293t-gold-clip-sample-2_fastqc.zip
378.12 kB
ptbp1-hek293t-gold-clip-sample-2.fastq.gz
19.90 MB
iCount RNA-maps
ptbp1-hek293t-gold-clip-sample-2_trimmed_single.tar.gz
381.60 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
ptbp1-hek293t-gold-clip-sample-2_trimmed.fastq.gz
20.04 MB
STAR
ptbp1-hek293t-gold-clip-sample-2_trimmed.bam
49.35 MB
ptbp1-hek293t-gold-clip-sample-2_trimmed.bam.bai
1.65 MB
ptbp1-hek293t-gold-clip-sample-2_trimmed_SJ.out.tab
19.48 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_stats.txt
1.80 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed.bw
19.23 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_unmapped.out.mate1.fastq.gz
11.69 MB
iCount summary
ptbp1-hek293t-gold-clip-sample-2_trimmed_single_summary_gene.tsv
347.50 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_single_summary_subtype.tsv
976 B
ptbp1-hek293t-gold-clip-sample-2_trimmed_single_summary_type.tsv
421 B
Paraclu
ptbp1-hek293t-gold-clip-sample-2_trimmed_single_peaks.bed.gz
358 B
K-mers
ptbp1-hek293t-gold-clip-sample-2_trimmed_single.tar.gz
126.02 kB

PTBP1_Hela_WT_20110427_LUjh27_3

iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.tar.gz
910.74 kB
K-mers
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.tar.gz
2.92 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3.fastq.gz
81.06 MB
ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip
335.35 kB
stderr.txt
1.21 kB
Cutadapt (single-end)
report.txt
666 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
STAR
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.77 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
161.89 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw
91.05 kB
Paraclu
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_peaks.bed.gz
91.14 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_skipped.bam
3.35 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_reads_single.bed.gz
8.30 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.bedgraph
38.99 MB
iCount summary
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_subtype.tsv
1013 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_gene.tsv
1.43 MB

PTBP1_Hela_WT_20110427_LUjh27_1

iCount xlsites
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.bed.gz
14.87 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_skipped.bam
3.59 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_singleAndMulti.bed.gz
21.85 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.bedgraph
71.37 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_reads_single.bed.gz
15.00 MB
FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27-1.fastq.gz
157.55 MB
stderr.txt
1.21 kB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-1_fastqc.zip
332.88 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz
159.61 MB
STAR
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai
3.70 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz
22.60 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab
329.70 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam
303.28 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bw
117.43 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_subtype.tsv
1.00 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_gene.tsv
1.61 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_type.tsv
437 B
Paraclu
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_peaks.bed.gz
255.26 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.tar.gz
1.12 MB
K-mers
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.tar.gz
4.36 MB

PTBP1_Hela_s1_irCLIP

Paraclu
ptbp1-hela-s1-irclip_trimmed_single_peaks.bed.gz
87.33 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-s1-irclip.fastq.gz
242.21 MB
ptbp1-hela-s1-irclip_fastqc.zip
276.12 kB
stderr.txt
1.05 kB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hela-s1-irclip_trimmed.fastq.gz
246.60 MB
report.txt
656 B
STAR
ptbp1-hela-s1-irclip_trimmed_stats.txt
1.81 kB
ptbp1-hela-s1-irclip_trimmed_unmapped.out.mate1.fastq.gz
90.90 MB
ptbp1-hela-s1-irclip_trimmed.bam.bai
2.59 MB
ptbp1-hela-s1-irclip_trimmed.bam
441.12 MB
ptbp1-hela-s1-irclip_trimmed_SJ.out.tab
1.63 MB
iCount xlsites
ptbp1-hela-s1-irclip_trimmed_single.bed.gz
23.03 MB
ptbp1-hela-s1-irclip_trimmed_skipped.bam
8.85 kB
ptbp1-hela-s1-irclip_trimmed_reads_single.bed.gz
23.26 MB
ptbp1-hela-s1-irclip_trimmed_singleAndMulti.bed.gz
38.76 MB
ptbp1-hela-s1-irclip_trimmed_single.bedgraph
105.03 MB
iCount RNA-maps
ptbp1-hela-s1-irclip_trimmed_single.tar.gz
1.64 MB
iCount summary
ptbp1-hela-s1-irclip_trimmed_single_summary_type.tsv
444 B
ptbp1-hela-s1-irclip_trimmed_single_summary_gene.tsv
2.00 MB
ptbp1-hela-s1-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
K-mers
ptbp1-hela-s1-irclip.tar.gz
509.82 kB

PTBP1_HEK293_siCtrl_H_20150527_Ja

Paraclu
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single_peaks.bed.gz
34.56 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-h-20150527-ja.fastq.gz
239.68 MB
stderr.txt
1.25 kB
ptbp1-hek293-sictrl-h-20150527-ja_fastqc.zip
392.06 kB
iCount summary
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single_summary_type.tsv
438 B
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single_summary_gene.tsv
1.64 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single.tar.gz
832.85 kB
K-mers
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single.tar.gz
2.87 MB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-h-20150527-ja_trimmed.fastq.gz
244.02 MB
report.txt
669 B
STAR
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_stats.txt
1.81 kB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed.bam
383.58 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_SJ.out.tab
541.43 kB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed.bw
93.42 kB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed.bam.bai
3.71 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
61.46 MB
iCount xlsites
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single.bedgraph
34.88 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single.bed.gz
7.62 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_singleAndMulti.bed.gz
13.19 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_reads_single.bed.gz
8.58 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_skipped.bam
5.21 kB

PTBP1_HEK293_siCtrl_H_20150527_Ja_1

STAR
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed.bam.bai
4.01 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_unmapped.out.mate1.fastq.gz
23.34 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed.bam
148.92 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_stats.txt
1.80 kB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed.bw
55.51 kB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_SJ.out.tab
206.10 kB
Paraclu
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single_peaks.bed.gz
4.17 kB
iCount RNA-maps
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single.tar.gz
622.61 kB
K-mers
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single.tar.gz
2.55 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-h-20150527-ja-1.fastq.gz
87.97 MB
stderr.txt
1.28 kB
ptbp1-hek293-sictrl-h-20150527-ja-1_fastqc.zip
399.87 kB
iCount summary
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single_summary_type.tsv
433 B
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single_summary_subtype.tsv
1011 B
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single_summary_gene.tsv
1.34 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed.fastq.gz
89.37 MB
iCount xlsites
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_singleAndMulti.bed.gz
5.25 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_skipped.bam
3.36 kB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single.bed.gz
2.87 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single.bedgraph
12.73 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_reads_single.bed.gz
3.25 MB

PTBP1_Hela_WT_20110427_LUjh27_1

FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-1.fastq.gz
157.55 MB
ptbp1-hela-wt-20110427-lujh27-1_fastqc.zip
332.89 kB
stderr.txt
1.26 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_subtype.tsv
1023 B
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_gene.tsv
1.61 MB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_type.tsv
439 B
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.tar.gz
1.11 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_peaks.bed.gz
255.30 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz
159.61 MB
STAR
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai
3.68 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam
266.61 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab
329.70 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz
22.60 MB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bed.gz
14.87 MB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_skipped.bam
3.56 kB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bedgraph
71.37 MB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_singleAndMulti.bed.gz
21.85 MB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_reads_single.bed.gz
15.00 MB
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.tar.gz
465.29 kB

iCLIP1_PTBP1_merged_replicates

K-mers
iCLIP1_PTBP1_merged_replicates_grouped_cdna.tar.gz
9.81 MB
iCount annotate
iCLIP1_PTBP1_merged_replicates_grouped_cdna_annotated.bed.gz
39.63 MB
iCLIP1_PTBP1_merged_replicates_grouped_cdna_annotated.bedgraph
158.23 MB
iCount RNA-maps
iCLIP1_PTBP1_merged_replicates_grouped_cdna.tar.gz
1.63 MB
Paraclu
iCLIP1_PTBP1_merged_replicates_grouped_cdna_peaks.bed.gz
738.03 kB
iCount group
iCLIP1_PTBP1_merged_replicates_grouped_reads.bed.gz
32.90 MB
iCLIP1_PTBP1_merged_replicates_grouped_cdna.bed.gz
32.68 MB
iCLIP1_PTBP1_merged_replicates_grouped_cdna.bedgraph
158.23 MB
iCount summary
iCLIP1_PTBP1_merged_replicates_grouped_cdna_summary_subtype.tsv
1.01 kB
iCLIP1_PTBP1_merged_replicates_grouped_cdna_summary_gene.tsv
1.90 MB
iCLIP1_PTBP1_merged_replicates_grouped_cdna_summary_type.tsv
439 B

goldCLIP_merged_replicates

iCount group
goldCLIP_merged_replicates_grouped_cdna.bed.gz
99.38 MB
goldCLIP_merged_replicates_grouped_cdna.bedgraph
478.88 MB
goldCLIP_merged_replicates_grouped_reads.bed.gz
110.91 MB
K-mers
goldCLIP_merged_replicates_grouped_cdna.tar.gz
28.87 MB
iCount summary
goldCLIP_merged_replicates_grouped_cdna_summary_gene.tsv
2.86 MB
goldCLIP_merged_replicates_grouped_cdna_summary_type.tsv
455 B
goldCLIP_merged_replicates_grouped_cdna_summary_subtype.tsv
1.03 kB
iCount RNA-maps
goldCLIP_merged_replicates_grouped_cdna.tar.gz
4.07 MB
Paraclu
goldCLIP_merged_replicates_grouped_cdna_peaks.bed.gz
1.86 MB
iCount annotate
goldCLIP_merged_replicates_grouped_cdna_annotated.bed.gz
116.36 MB
goldCLIP_merged_replicates_grouped_cdna_annotated.bedgraph
478.88 MB

Copy of PTBP1_Hela_s8_irCLIP

Paraclu
ptbp1-hela-s8-irclip_trimmed_single_peaks.bed.gz
499.43 kB
iCount RNA-maps
ptbp1-hela-s8-irclip_trimmed_single.tar.gz
2.54 MB
iCount xlsites
ptbp1-hela-s8-irclip_trimmed_singleAndMulti.bed.gz
91.43 MB
ptbp1-hela-s8-irclip_trimmed_skipped.bam
17.62 kB
ptbp1-hela-s8-irclip_trimmed_reads_single.bed.gz
55.88 MB
ptbp1-hela-s8-irclip_trimmed_single.bed.gz
55.29 MB
ptbp1-hela-s8-irclip_trimmed_single.bedgraph
256.07 MB
STAR
ptbp1-hela-s8-irclip_trimmed.bam
1.07 GB
ptbp1-hela-s8-irclip_trimmed_unmapped.out.mate1.fastq.gz
229.04 MB
ptbp1-hela-s8-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s8-irclip_trimmed_SJ.out.tab
4.01 MB
ptbp1-hela-s8-irclip_trimmed.bam.bai
2.52 MB
K-mers
ptbp1-hela-s8-irclip.tar.gz
577.61 kB
Cutadapt (single-end)
report.txt
656 B
fastqc
Directory
ptbp1-hela-s8-irclip_trimmed.fastq.gz
632.90 MB
iCount summary
ptbp1-hela-s8-irclip_trimmed_single_summary_type.tsv
447 B
ptbp1-hela-s8-irclip_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hela-s8-irclip_trimmed_single_summary_gene.tsv
2.40 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-s8-irclip.fastq.gz
620.92 MB
stderr.txt
1.05 kB
ptbp1-hela-s8-irclip_fastqc.zip
283.85 kB

PTBP1_Hela_WT_20110427_LUjh27_2

FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27-2.fastq.gz
51.86 MB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-2_fastqc.zip
335.50 kB
stderr.txt
1.26 kB
Cutadapt (single-end)
ptbp1-hela-wt-20110427-lujh27-2_trimmed.fastq.gz
52.09 MB
report.txt
666 B
fastqc
Directory
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.tar.gz
733.19 kB
STAR
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai
3.69 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz
7.38 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab
107.79 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam
88.85 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw
69.63 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bed.gz
5.03 MB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_skipped.bam
3.24 kB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_singleAndMulti.bed.gz
7.62 MB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_reads_single.bed.gz
5.08 MB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bedgraph
23.54 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_peaks.bed.gz
42.18 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_type.tsv
429 B
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_gene.tsv
1.27 MB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_subtype.tsv
1009 B
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.tar.gz
394.92 kB

PTBP1_Hela_WT_20110427_LUjh27_3

FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3.fastq.gz
81.06 MB
ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip
335.37 kB
stderr.txt
1.26 kB
Paraclu
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz
91.16 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz
914.75 kB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
report.txt
666 B
STAR
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.76 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
142.46 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw
91.05 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz
8.30 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph
38.99 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam
3.32 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv
1.43 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv
1012 B
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz
417.56 kB

PTBP1_293Flp_spyCLIP_lib1

FASTQ file (single-end)
ptbp1-293flp-spyclip-lib1.fastq.gz
1.40 GB
fastqc
Directory
stderr.txt
1.15 kB
ptbp1-293flp-spyclip-lib1_fastqc.zip
366.98 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
662 B
ptbp1-293flp-spyclip-lib1_trimmed.fastq.gz
1.39 GB
K-mers
ptbp1-293flp-spyclip-lib1.tar.gz
626.11 kB
iCount RNA-maps
ptbp1-293flp-spyclip-lib1_trimmed_single.tar.gz
4.56 MB
Paraclu
ptbp1-293flp-spyclip-lib1_trimmed_single_peaks.bed.gz
1.98 MB
STAR
ptbp1-293flp-spyclip-lib1_trimmed_unmapped.out.mate1.fastq.gz
160.38 MB
ptbp1-293flp-spyclip-lib1_trimmed.bam.bai
3.82 MB
ptbp1-293flp-spyclip-lib1_trimmed_stats.txt
1.82 kB
ptbp1-293flp-spyclip-lib1_trimmed.bam
2.84 GB
ptbp1-293flp-spyclip-lib1_trimmed_SJ.out.tab
4.76 MB
iCount xlsites
ptbp1-293flp-spyclip-lib1_trimmed_reads_single.bed.gz
101.13 MB
ptbp1-293flp-spyclip-lib1_trimmed_single.bed.gz
97.28 MB
ptbp1-293flp-spyclip-lib1_trimmed_skipped.bam
6.52 kB
ptbp1-293flp-spyclip-lib1_trimmed_single.bedgraph
472.26 MB
ptbp1-293flp-spyclip-lib1_trimmed_singleAndMulti.bed.gz
139.03 MB
iCount summary
ptbp1-293flp-spyclip-lib1_trimmed_single_summary_subtype.tsv
1.03 kB
ptbp1-293flp-spyclip-lib1_trimmed_single_summary_gene.tsv
2.54 MB
ptbp1-293flp-spyclip-lib1_trimmed_single_summary_type.tsv
452 B

PTBP1_Hela_WT_noAB_20110427_LUjh27

STAR
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bw
22.52 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_stats.txt
1.79 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bam.bai
1.78 MB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
152.64 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bam
2.89 MB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_SJ.out.tab
4.90 kB
iCount RNA-maps
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single.tar.gz
413.72 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.26 kB
ptbp1-hela-wt-noab-20110427-lujh27.fastq.gz
1.05 MB
ptbp1-hela-wt-noab-20110427-lujh27_fastqc.zip
354.01 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.fastq.gz
1.01 MB
iCount xlsites
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single.bedgraph
434.49 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_reads_single.bed.gz
115.57 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single.bed.gz
113.91 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_skipped.bam
2.93 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_singleAndMulti.bed.gz
215.22 kB
Paraclu
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single_peaks.bed.gz
275 B
K-mers
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single.tar.gz
448.80 kB
iCount summary
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single_summary_gene.tsv
437.39 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single_summary_type.tsv
415 B
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single_summary_subtype.tsv
899 B

HepG2-AGGF1-2.1.fastq.gz

K-mers
HepG2-AGGF1-2.1
0 B
HepG2-AGGF1-2.1.tar.gz
382.58 kB
FASTQ file (single-end)
stderr.txt
1.00 kB
fastqc
Directory
HepG2-AGGF1-2.1.fastq.gz
575.34 MB
HepG2-AGGF1-2.1_fastqc.zip
381.30 kB
iCount summary
HepG2-AGGF1-2.1_trimmed_single_summary_subtype.tsv
962 B
HepG2-AGGF1-2.1_trimmed_single_summary_gene.tsv
1.68 MB
HepG2-AGGF1-2.1_trimmed_single_summary_type.tsv
438 B
Paraclu
HepG2-AGGF1-2.1_trimmed_single_peaks.bed.gz
291.14 kB
iCount RNA-maps
HepG2-AGGF1-2.1_trimmed_single.tar.gz
867.38 kB
Cutadapt (single-end)
HepG2-AGGF1-2.1_trimmed.fastq.gz
575.57 MB
fastqc
Directory
report.txt
653 B
STAR
HepG2-AGGF1-2.1_trimmed.bam
1.03 GB
HepG2-AGGF1-2.1_trimmed.bam.bai
3.74 MB
HepG2-AGGF1-2.1_trimmed_SJ.out.tab
3.09 MB
HepG2-AGGF1-2.1_trimmed_unmapped.out.mate1.fastq.gz
199.70 MB
HepG2-AGGF1-2.1_trimmed_stats.txt
1.82 kB
iCount xlsites
HepG2-AGGF1-2.1_trimmed_skipped.bam
8.39 kB
HepG2-AGGF1-2.1_trimmed_singleAndMulti.bed.gz
39.48 MB
HepG2-AGGF1-2.1_trimmed_single.bed.gz
25.78 MB
HepG2-AGGF1-2.1_trimmed_single.bedgraph
121.36 MB
HepG2-AGGF1-2.1_trimmed_reads_single.bed.gz
27.31 MB

spyclip_ptbp1_lib1.fastq.gz

FASTQ file (single-end)
spyclip_ptbp1_lib1.fastq.gz
3.17 GB
fastqc
Directory
stderr.txt
1.01 kB
spyclip_ptbp1_lib1_fastqc.zip
390.37 kB

modified_eCLIP_PTBP1_K562_data.fastq.gz

iCount summary
modified_eCLIP_PTBP1_K562_data_trimmed_single_summary_type.tsv
446 B
modified_eCLIP_PTBP1_K562_data_trimmed_single_summary_gene.tsv
2.20 MB
modified_eCLIP_PTBP1_K562_data_trimmed_single_summary_subtype.tsv
1.01 kB
K-mers
modified_eCLIP_PTBP1_K562_data_trimmed_single.tar.gz
6.79 MB
Paraclu
modified_eCLIP_PTBP1_K562_data_trimmed_single_peaks.bed.gz
412.40 kB
Cutadapt (single-end)
report.txt
666 B
fastqc
Directory
modified_eCLIP_PTBP1_K562_data_trimmed.fastq.gz
446.81 MB
STAR
modified_eCLIP_PTBP1_K562_data_trimmed_unmapped.out.mate1.fastq.gz
105.71 MB
modified_eCLIP_PTBP1_K562_data_trimmed.bam.bai
4.03 MB
modified_eCLIP_PTBP1_K562_data_trimmed.bam
1.61 GB
modified_eCLIP_PTBP1_K562_data_trimmed_SJ.out.tab
2.89 MB
modified_eCLIP_PTBP1_K562_data_trimmed_stats.txt
1.81 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.19 kB
modified_eCLIP_PTBP1_K562_data_fastqc.zip
417.04 kB
modified_eCLIP_PTBP1_K562_data.fastq.gz
468.49 MB
iCount RNA-maps
modified_eCLIP_PTBP1_K562_data_trimmed_single.tar.gz
2.81 MB
iCount xlsites
modified_eCLIP_PTBP1_K562_data_trimmed_single.bed.gz
26.19 MB
modified_eCLIP_PTBP1_K562_data_trimmed_skipped.bam
8.84 kB
modified_eCLIP_PTBP1_K562_data_trimmed_reads_single.bed.gz
26.24 MB
modified_eCLIP_PTBP1_K562_data_trimmed_singleAndMulti.bed.gz
43.54 MB
modified_eCLIP_PTBP1_K562_data_trimmed_single.bedgraph
124.95 MB

No Sample

K-mers
modified_eCLIP_PTBP1_K562_data_trimmed_single.tar.gz
6.79 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27_trimmed_single_peaks.bed.gz
102.75 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-1.fastq.gz
157.55 MB
ptbp1-hela-wt-20110427-lujh27-1_fastqc.zip
332.89 kB
stderr.txt
1.26 kB
Upload iCount sample annotation
goldCLIP_annotation_sheet.xlsx
10.62 kB
goldCLIP_annotation_sheet.tab.gz
899 B
Upload iCount sample annotation
spyCLIP_annotation_sheet.tab.gz
1.04 kB
spyCLIP_annotation_sheet.xlsx
10.13 kB
iCount summary
modified_eCLIP_PTBP1_K562_data_trimmed_single_summary_type.tsv
446 B
modified_eCLIP_PTBP1_K562_data_trimmed_single_summary_gene.tsv
2.20 MB
modified_eCLIP_PTBP1_K562_data_trimmed_single_summary_subtype.tsv
1.01 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3.fastq.gz
81.06 MB
ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip
335.37 kB
stderr.txt
1.26 kB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3.fastq.gz
81.06 MB
ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip
335.37 kB
stderr.txt
1.26 kB
Paraclu
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz
91.16 kB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz
91.16 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz
914.75 kB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz
914.75 kB
FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27-2.fastq.gz
51.86 MB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-2_fastqc.zip
335.50 kB
stderr.txt
1.26 kB
Cutadapt (single-end)
ptbp1-hela-wt-20110427-lujh27-2_trimmed.fastq.gz
52.09 MB
report.txt
666 B
fastqc
Directory
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.tar.gz
733.19 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
ptbp1-hela-wt-20110427-lujh27.fastq.gz
85.32 MB
ptbp1-hela-wt-20110427-lujh27_fastqc.zip
335.06 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_subtype.tsv
1016 B
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_type.tsv
431 B
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_gene.tsv
1.42 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_peaks.bed.gz
102.78 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.tar.gz
895.61 kB
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.tar.gz
438.23 kB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
report.txt
666 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
report.txt
666 B
FASTQ file (single-end)
stderr.txt
1.32 kB
fastqc
Directory
ptbp1-hela-wt-noab-20110427-lujh27.fastq.gz
1.05 MB
ptbp1-hela-wt-noab-20110427-lujh27_fastqc.zip
354.02 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_subtype.tsv
1023 B
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_gene.tsv
1.61 MB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_summary_type.tsv
439 B
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.tar.gz
1.11 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single_peaks.bed.gz
255.30 kB
iCount RNA-maps
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single.tar.gz
414.54 kB
Paraclu
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single_peaks.bed.gz
284 B
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz
86.47 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.fastq.gz
1.01 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz
159.61 MB
STAR
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.76 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
142.46 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw
91.05 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.76 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
142.46 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw
91.05 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
STAR
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai
3.69 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz
7.38 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab
107.79 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam
88.85 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw
69.63 kB
STAR
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bam
2.52 MB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
152.64 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_stats.txt
1.79 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bw
22.52 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_SJ.out.tab
4.90 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bam.bai
1.78 MB
STAR
ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
11.36 MB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai
3.80 MB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam
146.28 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab
185.52 kB
ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27_trimmed.bw
91.82 kB
STAR
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai
3.68 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam
266.61 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab
329.70 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz
22.60 MB
iCount xlsites
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_singleAndMulti.bed.gz
215.26 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single.bed.gz
113.92 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_reads_single.bed.gz
115.58 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single.bedgraph
434.49 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_skipped.bam
2.90 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bed.gz
5.03 MB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_skipped.bam
3.24 kB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_singleAndMulti.bed.gz
7.62 MB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_reads_single.bed.gz
5.08 MB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single.bedgraph
23.54 MB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz
8.30 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph
38.99 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam
3.32 kB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz
8.30 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph
38.99 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam
3.32 kB
iCount summary
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single_summary_gene.tsv
437.34 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single_summary_subtype.tsv
900 B
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single_summary_type.tsv
414 B
Paraclu
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_peaks.bed.gz
42.18 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv
1.43 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv
1012 B
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv
1.43 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv
1012 B
PEKA
4mer analysis of ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome.tar.gz
165 B
iCount xlsites
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_skipped.bam
3.49 kB
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bed.gz
8.58 MB
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bedgraph
40.72 MB
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_singleAndMulti.bed.gz
12.71 MB
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_reads_single.bed.gz
8.64 MB
iCount summary
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_type.tsv
429 B
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_gene.tsv
1.27 MB
ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome_single_summary_subtype.tsv
1009 B
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bed.gz
14.87 MB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_skipped.bam
3.56 kB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_single.bedgraph
71.37 MB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_singleAndMulti.bed.gz
21.85 MB
ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome_reads_single.bed.gz
15.00 MB
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27-2_mapped_to_genome.tar.gz
394.92 kB
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz
417.56 kB
4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz
417.56 kB
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27-1_mapped_to_genome.tar.gz
465.29 kB
iCount xlsites
ptbp1-hek293t-gold-clip-sample-2_trimmed_single.bed.gz
66.61 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_reads_single.bed.gz
77.55 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_skipped.bam
2.93 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_singleAndMulti.bed.gz
207.08 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_single.bedgraph
239.62 kB
K-mers
iCLIP1_PTBP1_merged_replicates_grouped_cdna.tar.gz
9.81 MB
iCount annotate
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_annotated.bed.gz
49.37 MB
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_annotated.bedgraph
195.47 MB
FASTQ file (single-end)
ptbp1-293flp-spyclip-lib1.fastq.gz
1.40 GB
fastqc
Directory
stderr.txt
1.15 kB
ptbp1-293flp-spyclip-lib1_fastqc.zip
366.98 kB
K-mers
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna.tar.gz
8.79 MB
K-mers
ptbp1-hela-s2-irclip.tar.gz
522.79 kB
iCount RNA-maps
ptbp1-hela-s6-irclip_trimmed_single.tar.gz
2.25 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
662 B
ptbp1-293flp-spyclip-lib1_trimmed.fastq.gz
1.39 GB
K-mers
modified_eCLIP_PTBP1_HepG2_data_trimmed_single.tar.gz
13.57 MB
iCount xlsites
ptbp1-hela-s3-irclip_trimmed_skipped.bam
11.61 kB
ptbp1-hela-s3-irclip_trimmed_singleAndMulti.bed.gz
59.26 MB
ptbp1-hela-s3-irclip_trimmed_single.bed.gz
35.53 MB
ptbp1-hela-s3-irclip_trimmed_single.bedgraph
163.04 MB
ptbp1-hela-s3-irclip_trimmed_reads_single.bed.gz
35.93 MB
STAR
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed.bam.bai
4.01 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_unmapped.out.mate1.fastq.gz
23.34 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed.bam
148.92 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_stats.txt
1.80 kB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed.bw
55.51 kB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_SJ.out.tab
206.10 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.tar.gz
910.74 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.tar.gz
733.38 kB
Paraclu
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single_peaks.bed.gz
4.17 kB
K-mers
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.tar.gz
2.92 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz
91.16 kB
iCount RNA-maps
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single.tar.gz
622.61 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.26 kB
ptbp1-hela-wt-20110427-lujh27-3.fastq.gz
81.06 MB
ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip
335.37 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
STAR
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
142.46 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.76 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam
3.32 kB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz
8.30 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph
38.99 MB
iCount summary
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv
1.43 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv
1012 B
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz
914.72 kB
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz
416.27 kB
STAR
ptbp1-hela-s8-irclip_trimmed_SJ.out.tab
4.01 MB
ptbp1-hela-s8-irclip_trimmed.bam
1.07 GB
ptbp1-hela-s8-irclip_trimmed_unmapped.out.mate1.fastq.gz
229.04 MB
ptbp1-hela-s8-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s8-irclip_trimmed_SJ.out.tab
4.01 MB
ptbp1-hela-s8-irclip_trimmed.bam.bai
2.52 MB
ptbp1-hela-s8-irclip_trimmed.bam.bai
2.52 MB
ptbp1-hela-s8-irclip_trimmed.bam
1.07 GB
ptbp1-hela-s8-irclip_trimmed_unmapped.out.mate1.fastq.gz
229.04 MB
ptbp1-hela-s8-irclip_trimmed_stats.txt
1.82 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
201 B
iCount group
goldCLIP_merged_replicates_grouped_cdna.bed.gz
99.38 MB
goldCLIP_merged_replicates_grouped_cdna.bedgraph
478.88 MB
goldCLIP_merged_replicates_grouped_reads.bed.gz
110.91 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
ptbp1-hek293t-gold-clip-sample-1_trimmed.fastq.gz
1.93 GB
Paraclu
ptbp1-hela-s3-irclip_trimmed_single_peaks.bed.gz
219.71 kB
Paraclu
ptbp1-hela-s1-irclip_trimmed_single_peaks.bed.gz
87.33 kB
Paraclu
ptbp1-hela-s8-irclip_trimmed_single_peaks.bed.gz
499.43 kB
ptbp1-hela-s8-irclip_trimmed_single_peaks.bed.gz
499.43 kB
iCount RNA-maps
ptbp1-hela-s8-irclip_trimmed_single.tar.gz
2.54 MB
ptbp1-hela-s8-irclip_trimmed_single.tar.gz
2.54 MB
iCount xlsites
ptbp1-hela-s8-irclip_trimmed_singleAndMulti.bed.gz
91.43 MB
ptbp1-hela-s8-irclip_trimmed_skipped.bam
17.62 kB
ptbp1-hela-s8-irclip_trimmed_reads_single.bed.gz
55.88 MB
ptbp1-hela-s8-irclip_trimmed_single.bed.gz
55.29 MB
ptbp1-hela-s8-irclip_trimmed_single.bedgraph
256.07 MB
ptbp1-hela-s8-irclip_trimmed_singleAndMulti.bed.gz
91.43 MB
ptbp1-hela-s8-irclip_trimmed_skipped.bam
17.62 kB
ptbp1-hela-s8-irclip_trimmed_reads_single.bed.gz
55.88 MB
ptbp1-hela-s8-irclip_trimmed_single.bed.gz
55.29 MB
ptbp1-hela-s8-irclip_trimmed_single.bedgraph
256.07 MB
K-mers
ptbp1-hela-s8-irclip.tar.gz
577.61 kB
ptbp1-hela-s8-irclip.tar.gz
577.61 kB
Cutadapt (single-end)
report.txt
656 B
fastqc
Directory
ptbp1-hela-s8-irclip_trimmed.fastq.gz
632.90 MB
report.txt
656 B
fastqc
Directory
ptbp1-hela-s8-irclip_trimmed.fastq.gz
632.90 MB
iCount summary
ptbp1-hela-s8-irclip_trimmed_single_summary_type.tsv
447 B
ptbp1-hela-s8-irclip_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hela-s8-irclip_trimmed_single_summary_gene.tsv
2.40 MB
ptbp1-hela-s8-irclip_trimmed_single_summary_type.tsv
447 B
ptbp1-hela-s8-irclip_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hela-s8-irclip_trimmed_single_summary_gene.tsv
2.40 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-s8-irclip.fastq.gz
620.92 MB
stderr.txt
1.05 kB
ptbp1-hela-s8-irclip_fastqc.zip
283.85 kB
fastqc
Directory
ptbp1-hela-s8-irclip.fastq.gz
620.92 MB
stderr.txt
1.05 kB
ptbp1-hela-s8-irclip_fastqc.zip
283.85 kB
Paraclu
modified_eCLIP_PTBP1_K562_data_trimmed_single_peaks.bed.gz
412.40 kB
Cutadapt (single-end)
report.txt
666 B
fastqc
Directory
modified_eCLIP_PTBP1_K562_data_trimmed.fastq.gz
446.81 MB
FASTQ file (single-end)
fastqc
Directory
modified_eCLIP_PTBP1_HepG2_data_fastqc.zip
415.36 kB
modified_eCLIP_PTBP1_HepG2_data.fastq.gz
1.09 GB
stderr.txt
1.21 kB
Paraclu
modified_eCLIP_PTBP1_HepG2_data_trimmed_single_peaks.bed.gz
900.81 kB
iCount RNA-maps
modified_eCLIP_PTBP1_HepG2_data_trimmed_single.tar.gz
3.73 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
modified_eCLIP_PTBP1_HepG2_data_trimmed.fastq.gz
1.08 GB
STAR
modified_eCLIP_PTBP1_K562_data_trimmed_unmapped.out.mate1.fastq.gz
105.71 MB
modified_eCLIP_PTBP1_K562_data_trimmed.bam.bai
4.03 MB
modified_eCLIP_PTBP1_K562_data_trimmed.bam
1.61 GB
modified_eCLIP_PTBP1_K562_data_trimmed_SJ.out.tab
2.89 MB
modified_eCLIP_PTBP1_K562_data_trimmed_stats.txt
1.81 kB
Subsample FASTQ (single-end)
fastqc
Directory
ptbp1-293flp-spyclip_trimmed_downsampled.fastq.gz
146.43 MB
STAR
ptbp1-293flp-spyclip_trimmed_downsampled.bam
386.78 MB
ptbp1-293flp-spyclip_trimmed_downsampled.bam.bai
3.84 MB
ptbp1-293flp-spyclip_trimmed_downsampled_unmapped.out.mate1.fastq.gz
14.71 MB
ptbp1-293flp-spyclip_trimmed_downsampled_SJ.out.tab
1.04 MB
ptbp1-293flp-spyclip_trimmed_downsampled_stats.txt
1.81 kB
FASTQ file (single-end)
spyCLIP_PTBP1_data.fastq.gz
11.18 GB
stderr.txt
975 B
fastqc
Directory
spyCLIP_PTBP1_data_fastqc.zip
390.11 kB
iCount xlsites
ptbp1-293flp-spyclip_trimmed_downsampled_skipped.bam
3.42 kB
ptbp1-293flp-spyclip_trimmed_downsampled_single.bed.gz
13.61 MB
ptbp1-293flp-spyclip_trimmed_downsampled_reads_single.bed.gz
13.65 MB
ptbp1-293flp-spyclip_trimmed_downsampled_single.bedgraph
64.81 MB
ptbp1-293flp-spyclip_trimmed_downsampled_singleAndMulti.bed.gz
20.68 MB
iCount summary
ptbp1-293flp-spyclip_trimmed_downsampled_single_summary_gene.tsv
1.74 MB
ptbp1-293flp-spyclip_trimmed_downsampled_single_summary_type.tsv
442 B
ptbp1-293flp-spyclip_trimmed_downsampled_single_summary_subtype.tsv
1.00 kB
FASTQ file (single-end)
fastqc
Directory
goldCLIP_PTBP1_data.fastq.gz
7.92 GB
stderr.txt
995 B
goldCLIP_PTBP1_data_fastqc.zip
474.75 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
381 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
198 B
STAR
modified_eCLIP_PTBP1_HepG2_data_trimmed_stats.txt
1.82 kB
modified_eCLIP_PTBP1_HepG2_data_trimmed.bam.bai
6.83 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed.bam
4.24 GB
modified_eCLIP_PTBP1_HepG2_data_trimmed_unmapped.out.mate1.fastq.gz
287.84 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed_SJ.out.tab
5.75 MB
FASTQ file (single-end)
fastqc
Directory
irCLIP_PTBP1_data.fastq.gz
4.59 GB
stderr.txt
955 B
irCLIP_PTBP1_data_fastqc.zip
434.70 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293t-gold-clip-sample-4_fastqc.zip
384.52 kB
ptbp1-hek293t-gold-clip-sample-4.fastq.gz
1.33 GB
stderr.txt
1.23 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
ptbp1-hek293t-gold-clip-sample-3_fastqc.zip
363.49 kB
ptbp1-hek293t-gold-clip-sample-3.fastq.gz
205.60 MB
K-mers
goldCLIP_merged_replicates_grouped_cdna.tar.gz
28.87 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
ptbp1-hek293t-gold-clip-sample-2_fastqc.zip
378.12 kB
ptbp1-hek293t-gold-clip-sample-2.fastq.gz
19.90 MB
FASTQ file (single-end)
spyclip_ptbp1_lib1.fastq.gz
3.17 GB
fastqc
Directory
stderr.txt
1.01 kB
spyclip_ptbp1_lib1_fastqc.zip
390.37 kB
iCount RNA-maps
ptbp1-hek293t-gold-clip-sample-1_trimmed_single.tar.gz
3.12 MB
iCount xlsites
modified_eCLIP_PTBP1_HepG2_data_trimmed_single.bed.gz
52.18 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed_singleAndMulti.bed.gz
72.90 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed_skipped.bam
15.47 kB
modified_eCLIP_PTBP1_HepG2_data_trimmed_reads_single.bed.gz
53.25 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed_single.bedgraph
252.02 MB
iCount summary
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_type.tsv
429 B
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_subtype.tsv
1010 B
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_gene.tsv
1.27 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-293flp-spyclip.fastq.gz
4.86 GB
ptbp1-293flp-spyclip_fastqc.zip
376.89 kB
stderr.txt
1015 B
K-mers
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single.tar.gz
2.55 MB
K-mers
ptbp1-293flp-spyclip_trimmed_downsampled.tar.gz
486.01 kB
Paraclu
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single_peaks.bed.gz
34.56 kB
K-mers
ptbp1-hela-s3-irclip.tar.gz
547.22 kB
iCount RNA-maps
ptbp1-hela-s2-irclip_trimmed_single.tar.gz
1.83 MB
STAR
ptbp1-293flp-spyclip_trimmed_SJ.out.tab
9.99 MB
ptbp1-293flp-spyclip_trimmed_unmapped.out.mate1.fastq.gz
600.81 MB
ptbp1-293flp-spyclip_trimmed.bam.bai
7.21 MB
ptbp1-293flp-spyclip_trimmed_stats.txt
1.82 kB
ptbp1-293flp-spyclip_trimmed.bam
12.09 GB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.bed.gz
14.87 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_skipped.bam
3.59 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_singleAndMulti.bed.gz
21.85 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.bedgraph
71.37 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_reads_single.bed.gz
15.00 MB
iCount RNA-maps
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single.tar.gz
1.03 MB
K-mers
ptbp1-293flp-spyclip-lib1.tar.gz
626.11 kB
iCount xlsites
ptbp1-hela-s6-irclip_trimmed_singleAndMulti.bed.gz
72.52 MB
ptbp1-hela-s6-irclip_trimmed_single.bed.gz
43.61 MB
ptbp1-hela-s6-irclip_trimmed_skipped.bam
13.39 kB
ptbp1-hela-s6-irclip_trimmed_reads_single.bed.gz
44.08 MB
ptbp1-hela-s6-irclip_trimmed_single.bedgraph
200.89 MB
iCount xlsites
ptbp1-hela-s5-irclip_trimmed_skipped.bam
13.21 kB
ptbp1-hela-s5-irclip_trimmed_single.bed.gz
41.96 MB
ptbp1-hela-s5-irclip_trimmed_singleAndMulti.bed.gz
70.17 MB
ptbp1-hela-s5-irclip_trimmed_single.bedgraph
194.00 MB
ptbp1-hela-s5-irclip_trimmed_reads_single.bed.gz
42.34 MB
K-mers
ptbp1-hela-s5-irclip.tar.gz
554.61 kB
Paraclu
irCLIP_group_analysis_grouped_cdna_peaks.bed.gz
5.85 MB
K-mers
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single.tar.gz
3.19 MB
iCount summary
ptbp1-hela-s2-irclip_trimmed_single_summary_type.tsv
445 B
ptbp1-hela-s2-irclip_trimmed_single_summary_gene.tsv
2.12 MB
ptbp1-hela-s2-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
K-mers
ptbp1-hek293t-gold-clip-sample-1_trimmed_single.tar.gz
14.86 MB
STAR
ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
11.36 MB
ptbp1-hela-wt-20110427-lujh27_trimmed.bw
91.82 kB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai
3.80 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab
185.52 kB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam
166.03 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt
1.80 kB
iCount RNA-maps
ptbp1-hek293t-gold-clip-sample-2_trimmed_single.tar.gz
381.60 kB
Upload iCount sample annotation
irCLIP_annotation_sheet.tab.gz
963 B
irCLIP_annotation_sheet.xlsx
15.19 kB
Paraclu
ptbp1-hela-s7-irclip_trimmed_single_peaks.bed.gz
328.35 kB
iCount RNA-maps
ptbp1-293flp-spyclip_trimmed_downsampled_single.tar.gz
1.73 MB
Paraclu
ptbp1-293flp-spyclip_trimmed_downsampled_single_peaks.bed.gz
166.50 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-l-20150527-ja.fastq.gz
686.64 MB
ptbp1-hek293-sictrl-l-20150527-ja_fastqc.zip
399.37 kB
stderr.txt
1.25 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.19 kB
modified_eCLIP_PTBP1_K562_data_fastqc.zip
417.04 kB
modified_eCLIP_PTBP1_K562_data.fastq.gz
468.49 MB
iCount RNA-maps
modified_eCLIP_PTBP1_K562_data_trimmed_single.tar.gz
2.81 MB
iCount xlsites
modified_eCLIP_PTBP1_K562_data_trimmed_single.bed.gz
26.19 MB
modified_eCLIP_PTBP1_K562_data_trimmed_skipped.bam
8.84 kB
modified_eCLIP_PTBP1_K562_data_trimmed_reads_single.bed.gz
26.24 MB
modified_eCLIP_PTBP1_K562_data_trimmed_singleAndMulti.bed.gz
43.54 MB
modified_eCLIP_PTBP1_K562_data_trimmed_single.bedgraph
124.95 MB
Cutadapt (single-end)
report.txt
668 B
fastqc
Directory
ptbp1-hek293t-gold-clip-sample-3_trimmed.fastq.gz
213.01 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293t-gold-clip-sample-1.fastq.gz
1.96 GB
ptbp1-hek293t-gold-clip-sample-1_fastqc.zip
393.53 kB
stderr.txt
1.23 kB
Paraclu
ptbp1-hek293t-gold-clip-sample-1_trimmed_single_peaks.bed.gz
978.43 kB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
ptbp1-hek293t-gold-clip-sample-4_trimmed.fastq.gz
1.25 GB
Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
ptbp1-hek293t-gold-clip-sample-2_trimmed.fastq.gz
20.04 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3.fastq.gz
81.06 MB
ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip
335.35 kB
stderr.txt
1.21 kB
FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27-2.fastq.gz
51.86 MB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-2_fastqc.zip
335.49 kB
stderr.txt
1.21 kB
FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27-1.fastq.gz
157.55 MB
stderr.txt
1.21 kB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-1_fastqc.zip
332.88 kB
iCount RNA-maps
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single.tar.gz
413.72 kB
FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27.fastq.gz
85.32 MB
fastqc
Directory
stderr.txt
1.17 kB
ptbp1-hela-wt-20110427-lujh27_fastqc.zip
335.05 kB
K-mers
ptbp1-hela-wt-20110427-lujh27_trimmed_single.tar.gz
3.04 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.26 kB
ptbp1-hela-wt-noab-20110427-lujh27.fastq.gz
1.05 MB
ptbp1-hela-wt-noab-20110427-lujh27_fastqc.zip
354.01 kB
FASTQ file (single-end)
ptbp1-hela-wt-no-pnk-20110427-lujh28.fastq.gz
150.99 MB
stderr.txt
1.30 kB
fastqc
Directory
ptbp1-hela-wt-no-pnk-20110427-lujh28_fastqc.zip
351.32 kB
K-mers
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.tar.gz
2.94 MB
iCount summary
modified_eCLIP_PTBP1_HepG2_data_trimmed_single_summary_type.tsv
449 B
modified_eCLIP_PTBP1_HepG2_data_trimmed_single_summary_subtype.tsv
1.02 kB
modified_eCLIP_PTBP1_HepG2_data_trimmed_single_summary_gene.tsv
2.26 MB
STAR
ptbp1-hek293t-gold-clip-sample-4_trimmed.bam.bai
3.15 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_unmapped.out.mate1.fastq.gz
375.01 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed.bam
1.88 GB
ptbp1-hek293t-gold-clip-sample-4_trimmed_SJ.out.tab
3.10 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_stats.txt
1.81 kB
STAR
ptbp1-hek293t-gold-clip-sample-2_trimmed.bam
49.35 MB
ptbp1-hek293t-gold-clip-sample-2_trimmed.bam.bai
1.65 MB
ptbp1-hek293t-gold-clip-sample-2_trimmed_SJ.out.tab
19.48 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_stats.txt
1.80 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed.bw
19.23 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_unmapped.out.mate1.fastq.gz
11.69 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-h-20150527-ja.fastq.gz
239.68 MB
stderr.txt
1.25 kB
ptbp1-hek293-sictrl-h-20150527-ja_fastqc.zip
392.06 kB
STAR
ptbp1-hek293t-gold-clip-sample-3_trimmed_unmapped.out.mate1.fastq.gz
27.19 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed.bam
580.22 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed.bam.bai
2.85 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed_SJ.out.tab
189.73 kB
ptbp1-hek293t-gold-clip-sample-3_trimmed_stats.txt
1.81 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-l-20150527-ja-1.fastq.gz
383.82 MB
stderr.txt
1.28 kB
ptbp1-hek293-sictrl-l-20150527-ja-1_fastqc.zip
408.67 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-h-20150527-ja-1.fastq.gz
87.97 MB
stderr.txt
1.28 kB
ptbp1-hek293-sictrl-h-20150527-ja-1_fastqc.zip
399.87 kB
iCount summary
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single_summary_type.tsv
433 B
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single_summary_subtype.tsv
1011 B
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single_summary_gene.tsv
1.34 MB
Paraclu
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single_peaks.bed.gz
75.19 kB
iCount summary
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single_summary_type.tsv
438 B
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single_summary_gene.tsv
1.64 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single.tar.gz
832.85 kB
K-mers
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single.tar.gz
2.87 MB
iCount RNA-maps
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single.tar.gz
1.37 MB
Paraclu
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single_peaks.bed.gz
203.76 kB
K-mers
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single.tar.gz
4.72 MB
Cutadapt (single-end)
report.txt
666 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
Cutadapt (single-end)
report.txt
666 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-2_trimmed.fastq.gz
52.09 MB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-1_trimmed.fastq.gz
159.61 MB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
525 B
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.fastq.gz
1.01 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz
86.47 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
672 B
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.fastq.gz
152.39 MB
Cutadapt (single-end)
ptbp1-293flp-spyclip_trimmed.fastq.gz
4.84 GB
fastqc
Directory
report.txt
657 B
STAR
ptbp1-hek293t-gold-clip-sample-1_trimmed.bam.bai
3.38 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_stats.txt
1.82 kB
ptbp1-hek293t-gold-clip-sample-1_trimmed.bam
3.49 GB
ptbp1-hek293t-gold-clip-sample-1_trimmed_unmapped.out.mate1.fastq.gz
440.80 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_SJ.out.tab
3.76 MB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
19.89 kB
demux_nomatch_fastqc.zip
531.41 kB
stderr.txt
43 B
K-mers
ptbp1-hela-s7-irclip.tar.gz
558.54 kB
iCount xlsites
ptbp1-hek293t-gold-clip-sample-3_trimmed_skipped.bam
2.93 kB
ptbp1-hek293t-gold-clip-sample-3_trimmed_singleAndMulti.bed.gz
1.71 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed_single.bedgraph
4.18 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed_single.bed.gz
1018.98 kB
ptbp1-hek293t-gold-clip-sample-3_trimmed_reads_single.bed.gz
1.23 MB
FASTQ file (single-end)
ptbp1-hela-s7-irclip_fastqc.zip
280.87 kB
fastqc
Directory
stderr.txt
1.05 kB
ptbp1-hela-s7-irclip.fastq.gz
499.00 MB
K-mers
HepG2-AGGF1-2.1
0 B
HepG2-AGGF1-2.1.tar.gz
382.58 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed.fastq.gz
89.37 MB
iCount summary
ptbp1-hela-s7-irclip_trimmed_single_summary_gene.tsv
2.32 MB
ptbp1-hela-s7-irclip_trimmed_single_summary_type.tsv
446 B
ptbp1-hela-s7-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
Cutadapt (single-end)
report.txt
671 B
fastqc
Directory
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed.fastq.gz
390.08 MB
FASTQ file (single-end)
ptbp1-hela-s6-irclip.fastq.gz
481.46 MB
fastqc
Directory
stderr.txt
1.05 kB
ptbp1-hela-s6-irclip_fastqc.zip
280.07 kB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-h-20150527-ja_trimmed.fastq.gz
244.02 MB
report.txt
669 B
K-mers
ptbp1-hela-s6-irclip.tar.gz
563.63 kB
Cutadapt (single-end)
ptbp1-hek293-sictrl-l-20150527-ja_trimmed.fastq.gz
699.26 MB
report.txt
669 B
fastqc
Directory
FASTQ file (single-end)
ptbp1-hela-s5-irclip.fastq.gz
447.83 MB
fastqc
Directory
stderr.txt
1.05 kB
ptbp1-hela-s5-irclip_fastqc.zip
278.34 kB
STAR
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.77 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
161.89 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bw
91.05 kB
iCount summary
ptbp1-hela-s5-irclip_trimmed_single_summary_type.tsv
445 B
ptbp1-hela-s5-irclip_trimmed_single_summary_gene.tsv
2.27 MB
ptbp1-hela-s5-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
iCount RNA-maps
ptbp1-hela-s5-irclip_trimmed_single.tar.gz
2.20 MB
Paraclu
ptbp1-hela-s5-irclip_trimmed_single_peaks.bed.gz
272.12 kB
iCount RNA-maps
ptbp1-hela-s4-irclip_trimmed_single.tar.gz
2.18 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.05 kB
ptbp1-hela-s4-irclip_fastqc.zip
280.38 kB
ptbp1-hela-s4-irclip.fastq.gz
445.34 MB
STAR
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam.bai
3.70 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_unmapped.out.mate1.fastq.gz
22.60 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_SJ.out.tab
329.70 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bam
303.28 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed.bw
117.43 kB
K-mers
ptbp1-hela-s4-irclip.tar.gz
563.11 kB
FASTQ file (single-end)
ptbp1-hela-s3-irclip.fastq.gz
387.43 MB
fastqc
Directory
ptbp1-hela-s3-irclip_fastqc.zip
282.55 kB
stderr.txt
1.05 kB
iCount RNA-maps
ptbp1-hela-s3-irclip_trimmed_single.tar.gz
2.04 MB
STAR
ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam
99.81 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai
3.70 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab
107.79 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz
7.37 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw
69.63 kB
STAR
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_stats.txt
1.79 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bam.bai
1.78 MB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
152.64 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bam
2.89 MB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bw
22.52 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_SJ.out.tab
4.90 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-s2-irclip.fastq.gz
304.06 MB
ptbp1-hela-s2-irclip_fastqc.zip
278.97 kB
stderr.txt
1.05 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hela-s1-irclip.fastq.gz
242.21 MB
ptbp1-hela-s1-irclip_fastqc.zip
276.12 kB
stderr.txt
1.05 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
656 B
ptbp1-hela-s7-irclip_trimmed.fastq.gz
508.10 MB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hela-s6-irclip_trimmed.fastq.gz
490.88 MB
report.txt
656 B
Cutadapt (single-end)
report.txt
656 B
fastqc
Directory
ptbp1-hela-s5-irclip_trimmed.fastq.gz
456.08 MB
STAR
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.bam.bai
3.91 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_stats.txt
1.81 kB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_unmapped.out.mate1.fastq.gz
24.49 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_SJ.out.tab
295.92 kB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.bam
307.35 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
656 B
ptbp1-hela-s4-irclip_trimmed.fastq.gz
454.28 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_peaks.bed.gz
91.14 kB
iCount xlsites
ptbp1-hek293t-gold-clip-sample-4_trimmed_reads_single.bed.gz
52.83 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_singleAndMulti.bed.gz
64.60 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_skipped.bam
5.56 kB
ptbp1-hek293t-gold-clip-sample-4_trimmed_single.bed.gz
47.30 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_single.bedgraph
226.16 MB
Cutadapt (single-end)
report.txt
656 B
fastqc
Directory
ptbp1-hela-s3-irclip_trimmed.fastq.gz
395.18 MB
iCount RNA-maps
ptbp1-hek293t-gold-clip-sample-4_trimmed_single.tar.gz
2.85 MB
iCount summary
ptbp1-hek293t-gold-clip-sample-2_trimmed_single_summary_gene.tsv
347.50 kB
ptbp1-hek293t-gold-clip-sample-2_trimmed_single_summary_subtype.tsv
976 B
ptbp1-hek293t-gold-clip-sample-2_trimmed_single_summary_type.tsv
421 B
Cutadapt (single-end)
fastqc
Directory
report.txt
656 B
ptbp1-hela-s2-irclip_trimmed.fastq.gz
309.80 MB
Paraclu
ptbp1-hek293t-gold-clip-sample-2_trimmed_single_peaks.bed.gz
358 B
iCount summary
ptbp1-hek293t-gold-clip-sample-3_trimmed_single_summary_subtype.tsv
1012 B
ptbp1-hek293t-gold-clip-sample-3_trimmed_single_summary_type.tsv
438 B
ptbp1-hek293t-gold-clip-sample-3_trimmed_single_summary_gene.tsv
1.09 MB
iCount RNA-maps
ptbp1-hek293t-gold-clip-sample-3_trimmed_single.tar.gz
615.12 kB
Paraclu
ptbp1-hek293t-gold-clip-sample-3_trimmed_single_peaks.bed.gz
4.86 kB
K-mers
ptbp1-hek293t-gold-clip-sample-3_trimmed_single.tar.gz
2.05 MB
Cutadapt (single-end)
fastqc
Directory
ptbp1-hela-s1-irclip_trimmed.fastq.gz
246.60 MB
report.txt
656 B
STAR
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_unmapped.out.mate1.fastq.gz
110.83 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed.bam.bai
3.06 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed.bam
656.60 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_stats.txt
1.81 kB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_SJ.out.tab
974.14 kB
STAR
ptbp1-hela-s7-irclip_trimmed_unmapped.out.mate1.fastq.gz
185.99 MB
ptbp1-hela-s7-irclip_trimmed.bam.bai
2.41 MB
ptbp1-hela-s7-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s7-irclip_trimmed_SJ.out.tab
3.26 MB
ptbp1-hela-s7-irclip_trimmed.bam
897.81 MB
STAR
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_stats.txt
1.81 kB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed.bam
383.58 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_SJ.out.tab
541.43 kB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed.bw
93.42 kB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed.bam.bai
3.71 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
61.46 MB
STAR
ptbp1-hela-s6-irclip_trimmed.bam
857.37 MB
ptbp1-hela-s6-irclip_trimmed.bam.bai
2.42 MB
ptbp1-hela-s6-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s6-irclip_trimmed_unmapped.out.mate1.fastq.gz
177.87 MB
ptbp1-hela-s6-irclip_trimmed_SJ.out.tab
3.13 MB
STAR
ptbp1-hela-s5-irclip_trimmed.bam.bai
2.38 MB
ptbp1-hela-s5-irclip_trimmed.bam
810.79 MB
ptbp1-hela-s5-irclip_trimmed_unmapped.out.mate1.fastq.gz
166.79 MB
ptbp1-hela-s5-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s5-irclip_trimmed_SJ.out.tab
2.97 MB
STAR
ptbp1-hek293-sictrl-l-20150527-ja_trimmed.bam.bai
2.64 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
194.77 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_SJ.out.tab
1.55 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed.bam
1.10 GB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_stats.txt
1.81 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_skipped.bam
3.35 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_reads_single.bed.gz
8.30 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single.bedgraph
38.99 MB
STAR
ptbp1-hela-s4-irclip_trimmed.bam
795.36 MB
ptbp1-hela-s4-irclip_trimmed.bam.bai
2.40 MB
ptbp1-hela-s4-irclip_trimmed_unmapped.out.mate1.fastq.gz
164.48 MB
ptbp1-hela-s4-irclip_trimmed_SJ.out.tab
2.93 MB
ptbp1-hela-s4-irclip_trimmed_stats.txt
1.82 kB
STAR
ptbp1-hela-s3-irclip_trimmed_unmapped.out.mate1.fastq.gz
143.17 MB
ptbp1-hela-s3-irclip_trimmed.bam
694.20 MB
ptbp1-hela-s3-irclip_trimmed.bam.bai
2.41 MB
ptbp1-hela-s3-irclip_trimmed_stats.txt
1.82 kB
ptbp1-hela-s3-irclip_trimmed_SJ.out.tab
2.56 MB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.bed.gz
5.03 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_singleAndMulti.bed.gz
7.62 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.bedgraph
23.54 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_skipped.bam
3.27 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_reads_single.bed.gz
5.08 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_peaks.bed.gz
42.16 kB
iCount xlsites
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single.bedgraph
434.49 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_reads_single.bed.gz
115.57 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single.bed.gz
113.91 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_skipped.bam
2.93 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_singleAndMulti.bed.gz
215.22 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27_trimmed_singleAndMulti.bed.gz
12.71 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_reads_single.bed.gz
8.64 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_single.bed.gz
8.58 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_single.bedgraph
40.72 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_skipped.bam
3.52 kB
Paraclu
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single_peaks.bed.gz
275 B
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27_trimmed_single.tar.gz
894.70 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_subtype.tsv
1.00 kB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_gene.tsv
1.61 MB
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_summary_type.tsv
437 B
Paraclu
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single_peaks.bed.gz
255.26 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.tar.gz
1.12 MB
iCount xlsites
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_skipped.bam
3.56 kB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.bed.gz
6.60 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_singleAndMulti.bed.gz
11.51 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_reads_single.bed.gz
7.18 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.bedgraph
30.87 MB
iCount RNA-maps
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.tar.gz
876.13 kB
Paraclu
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_peaks.bed.gz
86.00 kB
STAR
ptbp1-hela-s2-irclip_trimmed.bam
553.35 MB
ptbp1-hela-s2-irclip_trimmed_unmapped.out.mate1.fastq.gz
113.52 MB
ptbp1-hela-s2-irclip_trimmed.bam.bai
2.45 MB
ptbp1-hela-s2-irclip_trimmed_stats.txt
1.81 kB
ptbp1-hela-s2-irclip_trimmed_SJ.out.tab
2.06 MB
iCount summary
ptbp1-hek293t-gold-clip-sample-4_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hek293t-gold-clip-sample-4_trimmed_single_summary_type.tsv
450 B
ptbp1-hek293t-gold-clip-sample-4_trimmed_single_summary_gene.tsv
2.48 MB
iCount xlsites
ptbp1-hek293t-gold-clip-sample-1_trimmed_single.bed.gz
59.33 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_singleAndMulti.bed.gz
81.06 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_single.bedgraph
284.45 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_reads_single.bed.gz
66.62 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_skipped.bam
8.31 kB
K-mers
ptbp1-hek293t-gold-clip-sample-4_trimmed_single.tar.gz
11.24 MB
K-mers
ptbp1-hek293t-gold-clip-sample-2_trimmed_single.tar.gz
126.02 kB
STAR
ptbp1-hela-s1-irclip_trimmed_stats.txt
1.81 kB
ptbp1-hela-s1-irclip_trimmed_unmapped.out.mate1.fastq.gz
90.90 MB
ptbp1-hela-s1-irclip_trimmed.bam.bai
2.59 MB
ptbp1-hela-s1-irclip_trimmed.bam
441.12 MB
ptbp1-hela-s1-irclip_trimmed_SJ.out.tab
1.63 MB
iCount xlsites
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_singleAndMulti.bed.gz
5.25 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_skipped.bam
3.36 kB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single.bed.gz
2.87 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_single.bedgraph
12.73 MB
ptbp1-hek293-sictrl-h-20150527-ja-1_trimmed_reads_single.bed.gz
3.25 MB
iCount xlsites
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single.bedgraph
34.88 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_single.bed.gz
7.62 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_singleAndMulti.bed.gz
13.19 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_reads_single.bed.gz
8.58 MB
ptbp1-hek293-sictrl-h-20150527-ja_trimmed_skipped.bam
5.21 kB
iCount xlsites
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single.bed.gz
12.05 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_singleAndMulti.bed.gz
22.05 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single.bedgraph
55.74 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_reads_single.bed.gz
13.57 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_skipped.bam
4.52 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_subtype.tsv
1013 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed_single_summary_gene.tsv
1.43 MB
iCount RNA-maps
ptbp1-293flp-spyclip-lib1_trimmed_single.tar.gz
4.56 MB
iCount xlsites
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_skipped.bam
7.33 kB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single.bed.gz
21.50 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_singleAndMulti.bed.gz
37.73 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_reads_single.bed.gz
24.09 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single.bedgraph
100.73 MB
K-mers
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single.tar.gz
448.80 kB
iCount summary
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single_summary_gene.tsv
437.39 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single_summary_type.tsv
415 B
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_single_summary_subtype.tsv
899 B
iCount summary
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_gene.tsv
1.42 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_type.tsv
431 B
ptbp1-hela-wt-20110427-lujh27_trimmed_single_summary_subtype.tsv
1014 B
iCount summary
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single_summary_type.tsv
441 B
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single_summary_subtype.tsv
1.00 kB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single_summary_gene.tsv
1.96 MB
iCount summary
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_subtype.tsv
1020 B
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_gene.tsv
1.49 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_type.tsv
438 B
iCount summary
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single_summary_type.tsv
442 B
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single_summary_gene.tsv
2.17 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single_summary_subtype.tsv
1.01 kB
iCount summary
ptbp1-hek293t-gold-clip-sample-1_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hek293t-gold-clip-sample-1_trimmed_single_summary_gene.tsv
2.58 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_single_summary_type.tsv
450 B
K-mers
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.tar.gz
2.51 MB
K-mers
ptbp1-hela-wt-20110427-lujh27-1_trimmed_single.tar.gz
4.36 MB
Upload iCount sample annotation
spyCLIP_updated_annotation_sheet.xlsx
9.83 kB
spyCLIP_updated_annotation_sheet.tab.gz
1.05 kB
iCount summary
goldCLIP_merged_replicates_grouped_cdna_summary_gene.tsv
2.86 MB
goldCLIP_merged_replicates_grouped_cdna_summary_type.tsv
455 B
goldCLIP_merged_replicates_grouped_cdna_summary_subtype.tsv
1.03 kB
iCount RNA-maps
goldCLIP_merged_replicates_grouped_cdna.tar.gz
4.07 MB
Paraclu
goldCLIP_merged_replicates_grouped_cdna_peaks.bed.gz
1.86 MB
iCount annotate
goldCLIP_merged_replicates_grouped_cdna_annotated.bed.gz
116.36 MB
goldCLIP_merged_replicates_grouped_cdna_annotated.bedgraph
478.88 MB
Paraclu
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_peaks.bed.gz
501.20 kB
iCount annotate
iCLIP1_PTBP1_merged_replicates_grouped_cdna_annotated.bed.gz
39.63 MB
iCLIP1_PTBP1_merged_replicates_grouped_cdna_annotated.bedgraph
158.23 MB
iCount RNA-maps
iCLIP1_PTBP1_merged_replicates_grouped_cdna.tar.gz
1.63 MB
Paraclu
iCLIP1_PTBP1_merged_replicates_grouped_cdna_peaks.bed.gz
738.03 kB
iCount RNA-maps
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna.tar.gz
1.88 MB
Paraclu
ptbp1-293flp-spyclip-lib1_trimmed_single_peaks.bed.gz
1.98 MB
iCount xlsites
ptbp1-hela-s7-irclip_trimmed_skipped.bam
13.34 kB
ptbp1-hela-s7-irclip_trimmed_singleAndMulti.bed.gz
76.98 MB
ptbp1-hela-s7-irclip_trimmed_single.bed.gz
46.12 MB
ptbp1-hela-s7-irclip_trimmed_single.bedgraph
213.47 MB
ptbp1-hela-s7-irclip_trimmed_reads_single.bed.gz
46.56 MB
iCount RNA-maps
ptbp1-hela-s7-irclip_trimmed_single.tar.gz
2.30 MB
Paraclu
ptbp1-hela-s6-irclip_trimmed_single_peaks.bed.gz
325.41 kB
STAR
ptbp1-293flp-spyclip-lib1_trimmed_unmapped.out.mate1.fastq.gz
160.38 MB
ptbp1-293flp-spyclip-lib1_trimmed.bam.bai
3.82 MB
ptbp1-293flp-spyclip-lib1_trimmed_stats.txt
1.82 kB
ptbp1-293flp-spyclip-lib1_trimmed.bam
2.84 GB
ptbp1-293flp-spyclip-lib1_trimmed_SJ.out.tab
4.76 MB
iCount xlsites
ptbp1-hela-s4-irclip_trimmed_singleAndMulti.bed.gz
67.56 MB
ptbp1-hela-s4-irclip_trimmed_skipped.bam
13.69 kB
ptbp1-hela-s4-irclip_trimmed_single.bedgraph
186.78 MB
ptbp1-hela-s4-irclip_trimmed_reads_single.bed.gz
41.04 MB
ptbp1-hela-s4-irclip_trimmed_single.bed.gz
40.61 MB
iCount summary
ptbp1-hela-s4-irclip_trimmed_single_summary_type.tsv
445 B
ptbp1-hela-s4-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
ptbp1-hela-s4-irclip_trimmed_single_summary_gene.tsv
2.26 MB
iCount xlsites
ptbp1-293flp-spyclip-lib1_trimmed_reads_single.bed.gz
101.13 MB
ptbp1-293flp-spyclip-lib1_trimmed_single.bed.gz
97.28 MB
ptbp1-293flp-spyclip-lib1_trimmed_skipped.bam
6.52 kB
ptbp1-293flp-spyclip-lib1_trimmed_single.bedgraph
472.26 MB
ptbp1-293flp-spyclip-lib1_trimmed_singleAndMulti.bed.gz
139.03 MB
iCount summary
ptbp1-293flp-spyclip-lib1_trimmed_single_summary_subtype.tsv
1.03 kB
ptbp1-293flp-spyclip-lib1_trimmed_single_summary_gene.tsv
2.54 MB
ptbp1-293flp-spyclip-lib1_trimmed_single_summary_type.tsv
452 B
iCount xlsites
ptbp1-hela-s2-irclip_trimmed_singleAndMulti.bed.gz
48.42 MB
ptbp1-hela-s2-irclip_trimmed_single.bed.gz
28.86 MB
ptbp1-hela-s2-irclip_trimmed_skipped.bam
9.98 kB
ptbp1-hela-s2-irclip_trimmed_reads_single.bed.gz
29.15 MB
ptbp1-hela-s2-irclip_trimmed_single.bedgraph
132.37 MB
iCount group
iCLIP1_PTBP1_merged_replicates_grouped_reads.bed.gz
32.90 MB
iCLIP1_PTBP1_merged_replicates_grouped_cdna.bed.gz
32.68 MB
iCLIP1_PTBP1_merged_replicates_grouped_cdna.bedgraph
158.23 MB
iCount group
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna.bed.gz
41.25 MB
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna.bedgraph
195.47 MB
4SU-iCLIP2_PTBP1_merged_replicates_grouped_reads.bed.gz
46.09 MB
iCount xlsites
ptbp1-hela-s1-irclip_trimmed_single.bed.gz
23.03 MB
ptbp1-hela-s1-irclip_trimmed_skipped.bam
8.85 kB
ptbp1-hela-s1-irclip_trimmed_reads_single.bed.gz
23.26 MB
ptbp1-hela-s1-irclip_trimmed_singleAndMulti.bed.gz
38.76 MB
ptbp1-hela-s1-irclip_trimmed_single.bedgraph
105.03 MB
iCount RNA-maps
ptbp1-hela-s1-irclip_trimmed_single.tar.gz
1.64 MB
iCount summary
iCLIP1_PTBP1_merged_replicates_grouped_cdna_summary_subtype.tsv
1.01 kB
iCLIP1_PTBP1_merged_replicates_grouped_cdna_summary_gene.tsv
1.90 MB
iCLIP1_PTBP1_merged_replicates_grouped_cdna_summary_type.tsv
439 B
iCount summary
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_summary_type.tsv
447 B
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_summary_gene.tsv
2.51 MB
4SU-iCLIP2_PTBP1_merged_replicates_grouped_cdna_summary_subtype.tsv
1.02 kB
iCount summary
ptbp1-hela-s3-irclip_trimmed_single_summary_type.tsv
445 B
ptbp1-hela-s3-irclip_trimmed_single_summary_gene.tsv
2.20 MB
ptbp1-hela-s3-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
Paraclu
ptbp1-hela-s2-irclip_trimmed_single_peaks.bed.gz
132.96 kB
iCount summary
ptbp1-hela-s6-irclip_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hela-s6-irclip_trimmed_single_summary_type.tsv
447 B
ptbp1-hela-s6-irclip_trimmed_single_summary_gene.tsv
2.29 MB
Paraclu
ptbp1-hela-s4-irclip_trimmed_single_peaks.bed.gz
287.29 kB
iCount summary
ptbp1-hela-s1-irclip_trimmed_single_summary_type.tsv
444 B
ptbp1-hela-s1-irclip_trimmed_single_summary_gene.tsv
2.00 MB
ptbp1-hela-s1-irclip_trimmed_single_summary_subtype.tsv
1.01 kB
K-mers
ptbp1-hela-s1-irclip.tar.gz
509.82 kB
iCount summary
irCLIP_group_analysis_grouped_cdna_summary_gene.tsv
3.21 MB
irCLIP_group_analysis_grouped_cdna_summary_type.tsv
456 B
irCLIP_group_analysis_grouped_cdna_summary_subtype.tsv
1.04 kB
iCount RNA-maps
irCLIP_group_analysis_grouped_cdna.tar.gz
5.40 MB
iCount annotate
irCLIP_group_analysis_grouped_cdna_annotated.bed.gz
289.31 MB
irCLIP_group_analysis_grouped_cdna_annotated.bedgraph
1.18 GB
iCount group
irCLIP_group_analysis_grouped_cdna.bed.gz
254.72 MB
irCLIP_group_analysis_grouped_reads.bed.gz
256.73 MB
irCLIP_group_analysis_grouped_cdna.bedgraph
1.18 GB
FASTQ file (single-end)
stderr.txt
1.00 kB
fastqc
Directory
HepG2-AGGF1-2.1.fastq.gz
575.34 MB
HepG2-AGGF1-2.1_fastqc.zip
381.30 kB
iCount summary
HepG2-AGGF1-2.1_trimmed_single_summary_subtype.tsv
962 B
HepG2-AGGF1-2.1_trimmed_single_summary_gene.tsv
1.68 MB
HepG2-AGGF1-2.1_trimmed_single_summary_type.tsv
438 B
Paraclu
HepG2-AGGF1-2.1_trimmed_single_peaks.bed.gz
291.14 kB
iCount RNA-maps
HepG2-AGGF1-2.1_trimmed_single.tar.gz
867.38 kB
Cutadapt (single-end)
HepG2-AGGF1-2.1_trimmed.fastq.gz
575.57 MB
fastqc
Directory
report.txt
653 B
STAR
HepG2-AGGF1-2.1_trimmed.bam
1.03 GB
HepG2-AGGF1-2.1_trimmed.bam.bai
3.74 MB
HepG2-AGGF1-2.1_trimmed_SJ.out.tab
3.09 MB
HepG2-AGGF1-2.1_trimmed_unmapped.out.mate1.fastq.gz
199.70 MB
HepG2-AGGF1-2.1_trimmed_stats.txt
1.82 kB
iCount xlsites
HepG2-AGGF1-2.1_trimmed_skipped.bam
8.39 kB
HepG2-AGGF1-2.1_trimmed_singleAndMulti.bed.gz
39.48 MB
HepG2-AGGF1-2.1_trimmed_single.bed.gz
25.78 MB
HepG2-AGGF1-2.1_trimmed_single.bedgraph
121.36 MB
HepG2-AGGF1-2.1_trimmed_reads_single.bed.gz
27.31 MB
Paraclu
ptbp1-hek293t-gold-clip-sample-4_trimmed_single_peaks.bed.gz
743.10 kB

modified_eCLIP_PTBP1_HepG2_data.fastq.gz

K-mers
modified_eCLIP_PTBP1_HepG2_data_trimmed_single.tar.gz
13.57 MB
FASTQ file (single-end)
fastqc
Directory
modified_eCLIP_PTBP1_HepG2_data_fastqc.zip
415.36 kB
modified_eCLIP_PTBP1_HepG2_data.fastq.gz
1.09 GB
stderr.txt
1.21 kB
Paraclu
modified_eCLIP_PTBP1_HepG2_data_trimmed_single_peaks.bed.gz
900.81 kB
iCount RNA-maps
modified_eCLIP_PTBP1_HepG2_data_trimmed_single.tar.gz
3.73 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
modified_eCLIP_PTBP1_HepG2_data_trimmed.fastq.gz
1.08 GB
STAR
modified_eCLIP_PTBP1_HepG2_data_trimmed_stats.txt
1.82 kB
modified_eCLIP_PTBP1_HepG2_data_trimmed.bam.bai
6.83 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed.bam
4.24 GB
modified_eCLIP_PTBP1_HepG2_data_trimmed_unmapped.out.mate1.fastq.gz
287.84 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed_SJ.out.tab
5.75 MB
iCount xlsites
modified_eCLIP_PTBP1_HepG2_data_trimmed_single.bed.gz
52.18 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed_singleAndMulti.bed.gz
72.90 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed_skipped.bam
15.47 kB
modified_eCLIP_PTBP1_HepG2_data_trimmed_reads_single.bed.gz
53.25 MB
modified_eCLIP_PTBP1_HepG2_data_trimmed_single.bedgraph
252.02 MB
iCount summary
modified_eCLIP_PTBP1_HepG2_data_trimmed_single_summary_type.tsv
449 B
modified_eCLIP_PTBP1_HepG2_data_trimmed_single_summary_subtype.tsv
1.02 kB
modified_eCLIP_PTBP1_HepG2_data_trimmed_single_summary_gene.tsv
2.26 MB

Expn_of_PTBP1_in_WT

Paraclu
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_peaks.bed.gz
91.16 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.26 kB
ptbp1-hela-wt-20110427-lujh27-3.fastq.gz
81.06 MB
ptbp1-hela-wt-20110427-lujh27-3_fastqc.zip
335.37 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
ptbp1-hela-wt-20110427-lujh27-3_trimmed.fastq.gz
82.24 MB
STAR
ptbp1-hela-wt-20110427-lujh27-3_trimmed_unmapped.out.mate1.fastq.gz
11.61 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam
142.46 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed.bam.bai
3.76 MB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-3_trimmed_SJ.out.tab
193.95 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_skipped.bam
3.32 kB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_singleAndMulti.bed.gz
12.34 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bed.gz
8.24 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_reads_single.bed.gz
8.30 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.bedgraph
38.99 MB
iCount summary
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_gene.tsv
1.43 MB
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_type.tsv
434 B
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single_summary_subtype.tsv
1012 B
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome_single.tar.gz
914.72 kB
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27-3_mapped_to_genome.tar.gz
416.27 kB

goldCLIP_PTBP1_data.fastq.gz

FASTQ file (single-end)
fastqc
Directory
goldCLIP_PTBP1_data.fastq.gz
7.92 GB
stderr.txt
995 B
goldCLIP_PTBP1_data_fastqc.zip
474.75 kB

spyCLIP_PTBP1_data.fastq.gz

FASTQ file (single-end)
spyCLIP_PTBP1_data.fastq.gz
11.18 GB
stderr.txt
975 B
fastqc
Directory
spyCLIP_PTBP1_data_fastqc.zip
390.11 kB

PTBP1_Hela_WT_noAB_20110427_LUjh27

FASTQ file (single-end)
stderr.txt
1.32 kB
fastqc
Directory
ptbp1-hela-wt-noab-20110427-lujh27.fastq.gz
1.05 MB
ptbp1-hela-wt-noab-20110427-lujh27_fastqc.zip
354.02 kB
iCount RNA-maps
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single.tar.gz
414.54 kB
Paraclu
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single_peaks.bed.gz
284 B
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.fastq.gz
1.01 MB
STAR
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bam
2.52 MB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
152.64 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_stats.txt
1.79 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bw
22.52 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed_SJ.out.tab
4.90 kB
ptbp1-hela-wt-noab-20110427-lujh27_trimmed.bam.bai
1.78 MB
iCount xlsites
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_singleAndMulti.bed.gz
215.26 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single.bed.gz
113.92 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_reads_single.bed.gz
115.58 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single.bedgraph
434.49 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_skipped.bam
2.90 kB
iCount summary
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single_summary_gene.tsv
437.34 kB
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single_summary_subtype.tsv
900 B
ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome_single_summary_type.tsv
414 B
PEKA
4mer analysis of ptbp1-hela-wt-noab-20110427-lujh27_mapped_to_genome.tar.gz
165 B

PTBP1_Hela_WT_20110427_LUjh27

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
ptbp1-hela-wt-20110427-lujh27.fastq.gz
85.32 MB
ptbp1-hela-wt-20110427-lujh27_fastqc.zip
335.06 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_subtype.tsv
1016 B
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_type.tsv
431 B
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_summary_gene.tsv
1.42 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single_peaks.bed.gz
102.78 kB
iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.tar.gz
895.61 kB
PEKA
4mer analysis of ptbp1-hela-wt-20110427-lujh27_mapped_to_genome.tar.gz
438.23 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
ptbp1-hela-wt-20110427-lujh27_trimmed.fastq.gz
86.47 MB
STAR
ptbp1-hela-wt-20110427-lujh27_trimmed_unmapped.out.mate1.fastq.gz
11.36 MB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam.bai
3.80 MB
ptbp1-hela-wt-20110427-lujh27_trimmed.bam
146.28 MB
ptbp1-hela-wt-20110427-lujh27_trimmed_SJ.out.tab
185.52 kB
ptbp1-hela-wt-20110427-lujh27_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27_trimmed.bw
91.82 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_skipped.bam
3.49 kB
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bed.gz
8.58 MB
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_single.bedgraph
40.72 MB
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_singleAndMulti.bed.gz
12.71 MB
ptbp1-hela-wt-20110427-lujh27_mapped_to_genome_reads_single.bed.gz
8.64 MB

PTBP1_HEK293T__gold_CLIP_sample_1

Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
ptbp1-hek293t-gold-clip-sample-1_trimmed.fastq.gz
1.93 GB
iCount RNA-maps
ptbp1-hek293t-gold-clip-sample-1_trimmed_single.tar.gz
3.12 MB
K-mers
ptbp1-hek293t-gold-clip-sample-1_trimmed_single.tar.gz
14.86 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293t-gold-clip-sample-1.fastq.gz
1.96 GB
ptbp1-hek293t-gold-clip-sample-1_fastqc.zip
393.53 kB
stderr.txt
1.23 kB
Paraclu
ptbp1-hek293t-gold-clip-sample-1_trimmed_single_peaks.bed.gz
978.43 kB
STAR
ptbp1-hek293t-gold-clip-sample-1_trimmed.bam.bai
3.38 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_stats.txt
1.82 kB
ptbp1-hek293t-gold-clip-sample-1_trimmed.bam
3.49 GB
ptbp1-hek293t-gold-clip-sample-1_trimmed_unmapped.out.mate1.fastq.gz
440.80 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_SJ.out.tab
3.76 MB
iCount xlsites
ptbp1-hek293t-gold-clip-sample-1_trimmed_single.bed.gz
59.33 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_singleAndMulti.bed.gz
81.06 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_single.bedgraph
284.45 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_reads_single.bed.gz
66.62 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_skipped.bam
8.31 kB
iCount summary
ptbp1-hek293t-gold-clip-sample-1_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hek293t-gold-clip-sample-1_trimmed_single_summary_gene.tsv
2.58 MB
ptbp1-hek293t-gold-clip-sample-1_trimmed_single_summary_type.tsv
450 B

PTBP1_HEK293T__gold_CLIP_sample_3

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
ptbp1-hek293t-gold-clip-sample-3_fastqc.zip
363.49 kB
ptbp1-hek293t-gold-clip-sample-3.fastq.gz
205.60 MB
Cutadapt (single-end)
report.txt
668 B
fastqc
Directory
ptbp1-hek293t-gold-clip-sample-3_trimmed.fastq.gz
213.01 MB
STAR
ptbp1-hek293t-gold-clip-sample-3_trimmed_unmapped.out.mate1.fastq.gz
27.19 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed.bam
580.22 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed.bam.bai
2.85 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed_SJ.out.tab
189.73 kB
ptbp1-hek293t-gold-clip-sample-3_trimmed_stats.txt
1.81 kB
iCount xlsites
ptbp1-hek293t-gold-clip-sample-3_trimmed_skipped.bam
2.93 kB
ptbp1-hek293t-gold-clip-sample-3_trimmed_singleAndMulti.bed.gz
1.71 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed_single.bedgraph
4.18 MB
ptbp1-hek293t-gold-clip-sample-3_trimmed_single.bed.gz
1018.98 kB
ptbp1-hek293t-gold-clip-sample-3_trimmed_reads_single.bed.gz
1.23 MB
iCount summary
ptbp1-hek293t-gold-clip-sample-3_trimmed_single_summary_subtype.tsv
1012 B
ptbp1-hek293t-gold-clip-sample-3_trimmed_single_summary_type.tsv
438 B
ptbp1-hek293t-gold-clip-sample-3_trimmed_single_summary_gene.tsv
1.09 MB
iCount RNA-maps
ptbp1-hek293t-gold-clip-sample-3_trimmed_single.tar.gz
615.12 kB
Paraclu
ptbp1-hek293t-gold-clip-sample-3_trimmed_single_peaks.bed.gz
4.86 kB
K-mers
ptbp1-hek293t-gold-clip-sample-3_trimmed_single.tar.gz
2.05 MB

PTBP1_HEK293T__gold_CLIP_sample_4

FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293t-gold-clip-sample-4_fastqc.zip
384.52 kB
ptbp1-hek293t-gold-clip-sample-4.fastq.gz
1.33 GB
stderr.txt
1.23 kB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
ptbp1-hek293t-gold-clip-sample-4_trimmed.fastq.gz
1.25 GB
STAR
ptbp1-hek293t-gold-clip-sample-4_trimmed.bam.bai
3.15 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_unmapped.out.mate1.fastq.gz
375.01 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed.bam
1.88 GB
ptbp1-hek293t-gold-clip-sample-4_trimmed_SJ.out.tab
3.10 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_stats.txt
1.81 kB
iCount xlsites
ptbp1-hek293t-gold-clip-sample-4_trimmed_reads_single.bed.gz
52.83 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_singleAndMulti.bed.gz
64.60 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_skipped.bam
5.56 kB
ptbp1-hek293t-gold-clip-sample-4_trimmed_single.bed.gz
47.30 MB
ptbp1-hek293t-gold-clip-sample-4_trimmed_single.bedgraph
226.16 MB
iCount RNA-maps
ptbp1-hek293t-gold-clip-sample-4_trimmed_single.tar.gz
2.85 MB
iCount summary
ptbp1-hek293t-gold-clip-sample-4_trimmed_single_summary_subtype.tsv
1.02 kB
ptbp1-hek293t-gold-clip-sample-4_trimmed_single_summary_type.tsv
450 B
ptbp1-hek293t-gold-clip-sample-4_trimmed_single_summary_gene.tsv
2.48 MB
K-mers
ptbp1-hek293t-gold-clip-sample-4_trimmed_single.tar.gz
11.24 MB
Paraclu
ptbp1-hek293t-gold-clip-sample-4_trimmed_single_peaks.bed.gz
743.10 kB

PTBP1_Hela_WT_20110427_LUjh27_2

iCount RNA-maps
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.tar.gz
733.38 kB
iCount summary
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_type.tsv
429 B
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_subtype.tsv
1010 B
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_summary_gene.tsv
1.27 MB
FASTQ file (single-end)
ptbp1-hela-wt-20110427-lujh27-2.fastq.gz
51.86 MB
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-2_fastqc.zip
335.49 kB
stderr.txt
1.21 kB
Cutadapt (single-end)
report.txt
666 B
fastqc
Directory
ptbp1-hela-wt-20110427-lujh27-2_trimmed.fastq.gz
52.09 MB
STAR
ptbp1-hela-wt-20110427-lujh27-2_trimmed_stats.txt
1.80 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam
99.81 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bam.bai
3.70 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_SJ.out.tab
107.79 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_unmapped.out.mate1.fastq.gz
7.37 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed.bw
69.63 kB
iCount xlsites
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.bed.gz
5.03 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_singleAndMulti.bed.gz
7.62 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.bedgraph
23.54 MB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_skipped.bam
3.27 kB
ptbp1-hela-wt-20110427-lujh27-2_trimmed_reads_single.bed.gz
5.08 MB
Paraclu
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single_peaks.bed.gz
42.16 kB
K-mers
ptbp1-hela-wt-20110427-lujh27-2_trimmed_single.tar.gz
2.51 MB

PTBP1_293Flp_spyCLIP

Subsample FASTQ (single-end)
fastqc
Directory
ptbp1-293flp-spyclip_trimmed_downsampled.fastq.gz
146.43 MB
STAR
ptbp1-293flp-spyclip_trimmed_downsampled.bam
386.78 MB
ptbp1-293flp-spyclip_trimmed_downsampled.bam.bai
3.84 MB
ptbp1-293flp-spyclip_trimmed_downsampled_unmapped.out.mate1.fastq.gz
14.71 MB
ptbp1-293flp-spyclip_trimmed_downsampled_SJ.out.tab
1.04 MB
ptbp1-293flp-spyclip_trimmed_downsampled_stats.txt
1.81 kB
iCount xlsites
ptbp1-293flp-spyclip_trimmed_downsampled_skipped.bam
3.42 kB
ptbp1-293flp-spyclip_trimmed_downsampled_single.bed.gz
13.61 MB
ptbp1-293flp-spyclip_trimmed_downsampled_reads_single.bed.gz
13.65 MB
ptbp1-293flp-spyclip_trimmed_downsampled_single.bedgraph
64.81 MB
ptbp1-293flp-spyclip_trimmed_downsampled_singleAndMulti.bed.gz
20.68 MB
iCount summary
ptbp1-293flp-spyclip_trimmed_downsampled_single_summary_gene.tsv
1.74 MB
ptbp1-293flp-spyclip_trimmed_downsampled_single_summary_type.tsv
442 B
ptbp1-293flp-spyclip_trimmed_downsampled_single_summary_subtype.tsv
1.00 kB
FASTQ file (single-end)
fastqc
Directory
ptbp1-293flp-spyclip.fastq.gz
4.86 GB
ptbp1-293flp-spyclip_fastqc.zip
376.89 kB
stderr.txt
1015 B
K-mers
ptbp1-293flp-spyclip_trimmed_downsampled.tar.gz
486.01 kB
STAR
ptbp1-293flp-spyclip_trimmed_SJ.out.tab
9.99 MB
ptbp1-293flp-spyclip_trimmed_unmapped.out.mate1.fastq.gz
600.81 MB
ptbp1-293flp-spyclip_trimmed.bam.bai
7.21 MB
ptbp1-293flp-spyclip_trimmed_stats.txt
1.82 kB
ptbp1-293flp-spyclip_trimmed.bam
12.09 GB
iCount RNA-maps
ptbp1-293flp-spyclip_trimmed_downsampled_single.tar.gz
1.73 MB
Paraclu
ptbp1-293flp-spyclip_trimmed_downsampled_single_peaks.bed.gz
166.50 kB
Cutadapt (single-end)
ptbp1-293flp-spyclip_trimmed.fastq.gz
4.84 GB
fastqc
Directory
report.txt
657 B

PTBP1_Hela_WT no PNK_20110427_LUjh28

FASTQ file (single-end)
ptbp1-hela-wt-no-pnk-20110427-lujh28.fastq.gz
150.99 MB
stderr.txt
1.30 kB
fastqc
Directory
ptbp1-hela-wt-no-pnk-20110427-lujh28_fastqc.zip
351.32 kB
K-mers
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.tar.gz
2.94 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
672 B
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.fastq.gz
152.39 MB
STAR
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.bam.bai
3.91 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_stats.txt
1.81 kB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_unmapped.out.mate1.fastq.gz
24.49 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_SJ.out.tab
295.92 kB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed.bam
307.35 MB
iCount xlsites
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_skipped.bam
3.56 kB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.bed.gz
6.60 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_singleAndMulti.bed.gz
11.51 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_reads_single.bed.gz
7.18 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.bedgraph
30.87 MB
iCount RNA-maps
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single.tar.gz
876.13 kB
Paraclu
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_peaks.bed.gz
86.00 kB
iCount summary
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_subtype.tsv
1020 B
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_gene.tsv
1.49 MB
ptbp1-hela-wt-no-pnk-20110427-lujh28_trimmed_single_summary_type.tsv
438 B

PTBP1_HEK293_siCtrl_L_20150527_Ja

FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-l-20150527-ja.fastq.gz
686.64 MB
ptbp1-hek293-sictrl-l-20150527-ja_fastqc.zip
399.37 kB
stderr.txt
1.25 kB
iCount RNA-maps
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single.tar.gz
1.37 MB
Paraclu
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single_peaks.bed.gz
203.76 kB
K-mers
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single.tar.gz
4.72 MB
Cutadapt (single-end)
ptbp1-hek293-sictrl-l-20150527-ja_trimmed.fastq.gz
699.26 MB
report.txt
669 B
fastqc
Directory
STAR
ptbp1-hek293-sictrl-l-20150527-ja_trimmed.bam.bai
2.64 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_unmapped.out.mate1.fastq.gz
194.77 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_SJ.out.tab
1.55 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed.bam
1.10 GB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_stats.txt
1.81 kB
iCount xlsites
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_skipped.bam
7.33 kB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single.bed.gz
21.50 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_singleAndMulti.bed.gz
37.73 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_reads_single.bed.gz
24.09 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single.bedgraph
100.73 MB
iCount summary
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single_summary_type.tsv
442 B
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single_summary_gene.tsv
2.17 MB
ptbp1-hek293-sictrl-l-20150527-ja_trimmed_single_summary_subtype.tsv
1.01 kB

PTBP1_HEK293_siCtrl_L_20150527_Ja_1

iCount RNA-maps
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single.tar.gz
1.03 MB
K-mers
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single.tar.gz
3.19 MB
FASTQ file (single-end)
fastqc
Directory
ptbp1-hek293-sictrl-l-20150527-ja-1.fastq.gz
383.82 MB
stderr.txt
1.28 kB
ptbp1-hek293-sictrl-l-20150527-ja-1_fastqc.zip
408.67 kB
Paraclu
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single_peaks.bed.gz
75.19 kB
Cutadapt (single-end)
report.txt
671 B
fastqc
Directory
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed.fastq.gz
390.08 MB
STAR
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_unmapped.out.mate1.fastq.gz
110.83 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed.bam.bai
3.06 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed.bam
656.60 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_stats.txt
1.81 kB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_SJ.out.tab
974.14 kB
iCount xlsites
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single.bed.gz
12.05 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_singleAndMulti.bed.gz
22.05 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single.bedgraph
55.74 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_reads_single.bed.gz
13.57 MB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_skipped.bam
4.52 kB
iCount summary
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single_summary_type.tsv
441 B
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single_summary_subtype.tsv
1.00 kB
ptbp1-hek293-sictrl-l-20150527-ja-1_trimmed_single_summary_gene.tsv
1.96 MB