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Folder iconFICC-Seq profiling of methyl-5-uridine

Igor Ruiz de los Mozos
Oct. 10, 2019
Methyl-5-uridine (m5U) is one the most abundant non-canonical bases present in cellular RNAs, and is formed via catalytic conversion of uridines. In yeast, m5U is known to be present at position 54 of tRNAs where modification is catalysed by the methyltransferase Trm2. Although the mammalian enzymes that catalyse m5U formation are yet to be identified via experimental evidence, based on sequence homology to Trm2, two candidates currently exist, TRMT2A and TRMT2B. Here we developed a genome-wide single-nucleotide resolution mapping method, Fluorouracil-Induced-Catalytic-Crosslinking-Sequencing (FICC-Seq), in order to map the relevant enzymatic targets in cellular RNA. We demonstrate that TRMT2A is responsible for the majority of m5U present in human RNA, and that it ubiquitously targets U54 of cytosolic tRNAs. By comparison to current methods, we show that FICC-Seq is a particularly robust method for accurate and reliable detection of relevant enzymatic target sites. Our associated demonstration of irreversible human m5U enzyme-RNA crosslinking in vivo following 5-flurouracil exposure is further intriguing, as it suggests a tangible mechanism for a previously suspected RNA-dependent route of 5-fluorouracil-mediated cytotoxicity. Carter, …, Hussain (2019) [FICC-Seq: a method for enzyme-specified profiling of methyl-5-uridine in cellular RNA](https://www.ncbi.nlm.nih.gov/pubmed/?term=FICC-Seq%3A+a+method+for+enzyme-specified+profiling+of+methyl-5-uridine+in+cellular+RNA)

TRMT2A_iCLIP_3

K-mers
trmt2a-iclip-3_trimmed_single.tar.gz
713.10 kB
FASTQ file (single-end)
fastqc
Directory
trmt2a-iclip-3_fastqc.zip
489.02 kB
trmt2a-iclip-3.fastq.gz
61.08 MB
stderr.txt
895 B
Cutadapt (single-end)
fastqc
Directory
trmt2a-iclip-3_trimmed.fastq.gz
61.91 MB
report.txt
649 B
STAR
trmt2a-iclip-3_trimmed_stats.txt
1.80 kB
trmt2a-iclip-3_trimmed_unmapped.out.mate1.fastq.gz
16.77 MB
trmt2a-iclip-3_trimmed.bam.bai
1.72 MB
trmt2a-iclip-3_trimmed_SJ.out.tab
10.11 kB
trmt2a-iclip-3_trimmed.bam
125.66 MB
trmt2a-iclip-3_trimmed.bw
19.96 kB
iCount xlsites
trmt2a-iclip-3_trimmed_reads_single.bed.gz
53.39 kB
trmt2a-iclip-3_trimmed_skipped.bam
2.93 kB
trmt2a-iclip-3_trimmed_single.bed.gz
47.50 kB
trmt2a-iclip-3_trimmed_single.bedgraph
170.47 kB
trmt2a-iclip-3_trimmed_singleAndMulti.bed.gz
192.11 kB
iCount summary
trmt2a-iclip-3_trimmed_single_summary_type.tsv
423 B
trmt2a-iclip-3_trimmed_single_summary_gene.tsv
160.62 kB
trmt2a-iclip-3_trimmed_single_summary_subtype.tsv
987 B
iCount RNA-maps
trmt2a-iclip-3_trimmed_single.tar.gz
353.76 kB
Paraclu
trmt2a-iclip-3_trimmed_single_peaks.bed.gz
2.14 kB

20170207_Hussain.fq.gz

FASTQ file (single-end)
20170207_Hussain.fastq.gz
3.88 GB
fastqc
Directory
stderr.txt
935 B
20170207_Hussain_fastqc.zip
589.69 kB

TRMT2A_iCLIP_1

FASTQ file (single-end)
fastqc
Directory
trmt2a-iclip-1.fastq.gz
672.84 MB
stderr.txt
895 B
trmt2a-iclip-1_fastqc.zip
573.07 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
650 B
trmt2a-iclip-1_trimmed.fastq.gz
698.39 MB
STAR
trmt2a-iclip-1_trimmed.bam.bai
2.39 MB
trmt2a-iclip-1_trimmed_unmapped.out.mate1.fastq.gz
41.53 MB
trmt2a-iclip-1_trimmed_stats.txt
1.81 kB
trmt2a-iclip-1_trimmed_SJ.out.tab
43.53 kB
trmt2a-iclip-1_trimmed.bam
1.34 GB
iCount xlsites
trmt2a-iclip-1_trimmed_skipped.bam
3.11 kB
trmt2a-iclip-1_trimmed_singleAndMulti.bed.gz
596.66 kB
trmt2a-iclip-1_trimmed_single.bed.gz
141.96 kB
trmt2a-iclip-1_trimmed_reads_single.bed.gz
152.91 kB
trmt2a-iclip-1_trimmed_single.bedgraph
512.04 kB
iCount summary
trmt2a-iclip-1_trimmed_single_summary_subtype.tsv
1014 B
trmt2a-iclip-1_trimmed_single_summary_gene.tsv
348.27 kB
trmt2a-iclip-1_trimmed_single_summary_type.tsv
434 B
iCount RNA-maps
trmt2a-iclip-1_trimmed_single.tar.gz
357.67 kB
Paraclu
trmt2a-iclip-1_trimmed_single_peaks.bed.gz
6.17 kB
K-mers
trmt2a-iclip-1_trimmed_single.tar.gz
997.61 kB

TRMT2A_iCLIP_2

FASTQ file (single-end)
fastqc
Directory
stderr.txt
895 B
trmt2a-iclip-2.fastq.gz
119.07 MB
trmt2a-iclip-2_fastqc.zip
526.69 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
650 B
trmt2a-iclip-2_trimmed.fastq.gz
121.76 MB
STAR
trmt2a-iclip-2_trimmed.bam.bai
1.87 MB
trmt2a-iclip-2_trimmed_unmapped.out.mate1.fastq.gz
22.01 MB
trmt2a-iclip-2_trimmed_stats.txt
1.81 kB
trmt2a-iclip-2_trimmed_SJ.out.tab
14.46 kB
trmt2a-iclip-2_trimmed.bam
246.95 MB
iCount xlsites
trmt2a-iclip-2_trimmed_skipped.bam
2.93 kB
trmt2a-iclip-2_trimmed_single.bed.gz
58.97 kB
trmt2a-iclip-2_trimmed_singleAndMulti.bed.gz
247.95 kB
trmt2a-iclip-2_trimmed_reads_single.bed.gz
64.30 kB
trmt2a-iclip-2_trimmed_single.bedgraph
209.17 kB
iCount summary
trmt2a-iclip-2_trimmed_single_summary_subtype.tsv
991 B
trmt2a-iclip-2_trimmed_single_summary_type.tsv
423 B
trmt2a-iclip-2_trimmed_single_summary_gene.tsv
163.05 kB
iCount RNA-maps
trmt2a-iclip-2_trimmed_single.tar.gz
338.65 kB
Paraclu
trmt2a-iclip-2_trimmed_single_peaks.bed.gz
2.81 kB
K-mers
trmt2a-iclip-2_trimmed_single.tar.gz
760.17 kB

TRMT2A_FICC-Seq_1

FASTQ file (single-end)
trmt2a-ficc-seq-1.fastq.gz
702.08 MB
fastqc
Directory
trmt2a-ficc-seq-1_fastqc.zip
626.61 kB
stderr.txt
955 B
Cutadapt (single-end)
report.txt
653 B
fastqc
Directory
trmt2a-ficc-seq-1_trimmed.fastq.gz
724.32 MB
STAR
trmt2a-ficc-seq-1_trimmed_unmapped.out.mate1.fastq.gz
52.56 MB
trmt2a-ficc-seq-1_trimmed.bam
1.53 GB
trmt2a-ficc-seq-1_trimmed.bam.bai
2.34 MB
trmt2a-ficc-seq-1_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-1_trimmed_SJ.out.tab
26.60 kB
iCount xlsites
trmt2a-ficc-seq-1_trimmed_skipped.bam
3.35 kB
trmt2a-ficc-seq-1_trimmed_reads_single.bed.gz
65.69 kB
trmt2a-ficc-seq-1_trimmed_singleAndMulti.bed.gz
236.91 kB
trmt2a-ficc-seq-1_trimmed_single.bed.gz
62.03 kB
trmt2a-ficc-seq-1_trimmed_single.bedgraph
213.49 kB
iCount summary
trmt2a-ficc-seq-1_trimmed_single_summary_type.tsv
435 B
trmt2a-ficc-seq-1_trimmed_single_summary_subtype.tsv
672 B
trmt2a-ficc-seq-1_trimmed_single_summary_gene.tsv
141.31 kB
iCount RNA-maps
trmt2a-ficc-seq-1_trimmed_single.tar.gz
276.30 kB
Paraclu
trmt2a-ficc-seq-1_trimmed_single_peaks.bed.gz
4.23 kB
K-mers
trmt2a-ficc-seq-1_trimmed_single.tar.gz
862.76 kB

TRMT2A_FICC-Seq_2

iCount RNA-maps
trmt2a-ficc-seq-2_trimmed_single.tar.gz
257.54 kB
FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-2.fastq.gz
407.54 MB
stderr.txt
955 B
trmt2a-ficc-seq-2_fastqc.zip
595.36 kB
Cutadapt (single-end)
trmt2a-ficc-seq-2_trimmed.fastq.gz
422.77 MB
fastqc
Directory
report.txt
653 B
STAR
trmt2a-ficc-seq-2_trimmed_unmapped.out.mate1.fastq.gz
39.24 MB
trmt2a-ficc-seq-2_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-2_trimmed.bam.bai
2.01 MB
trmt2a-ficc-seq-2_trimmed.bam
867.25 MB
trmt2a-ficc-seq-2_trimmed_SJ.out.tab
16.86 kB
iCount xlsites
trmt2a-ficc-seq-2_trimmed_single.bed.gz
47.41 kB
trmt2a-ficc-seq-2_trimmed_single.bedgraph
165.95 kB
trmt2a-ficc-seq-2_trimmed_skipped.bam
3.30 kB
trmt2a-ficc-seq-2_trimmed_reads_single.bed.gz
51.07 kB
trmt2a-ficc-seq-2_trimmed_singleAndMulti.bed.gz
181.26 kB
iCount summary
trmt2a-ficc-seq-2_trimmed_single_summary_type.tsv
435 B
trmt2a-ficc-seq-2_trimmed_single_summary_gene.tsv
97.54 kB
trmt2a-ficc-seq-2_trimmed_single_summary_subtype.tsv
604 B
Paraclu
trmt2a-ficc-seq-2_trimmed_single_peaks.bed.gz
3.35 kB
K-mers
trmt2a-ficc-seq-2_trimmed_single.tar.gz
879.15 kB

20170310_Hussain.fq.gz

FASTQ file (single-end)
fastqc
Directory
20170310_Hussain_fastqc.zip
585.30 kB
stderr.txt
935 B
20170310_Hussain.fastq.gz
4.49 GB

20170309_Hussain.fq.gz

FASTQ file (single-end)
fastqc
Directory
20170309_Hussain.fastq.gz
3.67 GB
stderr.txt
935 B
20170309_Hussain_fastqc.zip
545.20 kB

TRMT2A_FICC-Seq_3

iCount RNA-maps
trmt2a-ficc-seq-3_trimmed_single.tar.gz
260.42 kB
FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-3.fastq.gz
1.00 GB
trmt2a-ficc-seq-3_fastqc.zip
630.98 kB
stderr.txt
955 B
Cutadapt (single-end)
report.txt
653 B
fastqc
Directory
trmt2a-ficc-seq-3_trimmed.fastq.gz
1.01 GB
STAR
trmt2a-ficc-seq-3_trimmed.bam
2.23 GB
trmt2a-ficc-seq-3_trimmed_unmapped.out.mate1.fastq.gz
81.39 MB
trmt2a-ficc-seq-3_trimmed.bam.bai
2.51 MB
trmt2a-ficc-seq-3_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-3_trimmed_SJ.out.tab
28.72 kB
iCount xlsites
trmt2a-ficc-seq-3_trimmed_singleAndMulti.bed.gz
268.33 kB
trmt2a-ficc-seq-3_trimmed_single.bed.gz
66.99 kB
trmt2a-ficc-seq-3_trimmed_reads_single.bed.gz
71.12 kB
trmt2a-ficc-seq-3_trimmed_skipped.bam
3.72 kB
trmt2a-ficc-seq-3_trimmed_single.bedgraph
230.38 kB
iCount summary
trmt2a-ficc-seq-3_trimmed_single_summary_type.tsv
438 B
trmt2a-ficc-seq-3_trimmed_single_summary_gene.tsv
150.90 kB
trmt2a-ficc-seq-3_trimmed_single_summary_subtype.tsv
605 B
Paraclu
trmt2a-ficc-seq-3_trimmed_single_peaks.bed.gz
4.33 kB
K-mers
trmt2a-ficc-seq-3_trimmed_single.tar.gz
866.24 kB

TRMT2A_iCLIP_5

FASTQ file (single-end)
trmt2a-iclip-5.fastq.gz
237.70 MB
trmt2a-iclip-5_fastqc.zip
528.71 kB
stderr.txt
895 B
fastqc
Directory
Cutadapt (single-end)
fastqc
Directory
report.txt
650 B
trmt2a-iclip-5_trimmed.fastq.gz
240.79 MB
STAR
trmt2a-iclip-5_trimmed.bam.bai
2.06 MB
trmt2a-iclip-5_trimmed_SJ.out.tab
26.50 kB
trmt2a-iclip-5_trimmed_stats.txt
1.81 kB
trmt2a-iclip-5_trimmed_unmapped.out.mate1.fastq.gz
38.71 MB
trmt2a-iclip-5_trimmed.bam
476.32 MB
iCount xlsites
trmt2a-iclip-5_trimmed_singleAndMulti.bed.gz
329.15 kB
trmt2a-iclip-5_trimmed_skipped.bam
2.93 kB
trmt2a-iclip-5_trimmed_reads_single.bed.gz
93.80 kB
trmt2a-iclip-5_trimmed_single.bed.gz
88.06 kB
trmt2a-iclip-5_trimmed_single.bedgraph
310.40 kB
iCount summary
trmt2a-iclip-5_trimmed_single_summary_gene.tsv
223.29 kB
trmt2a-iclip-5_trimmed_single_summary_subtype.tsv
996 B
trmt2a-iclip-5_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
trmt2a-iclip-5_trimmed_single.tar.gz
331.29 kB
Paraclu
trmt2a-iclip-5_trimmed_single_peaks.bed.gz
3.49 kB
K-mers
trmt2a-iclip-5_trimmed_single.tar.gz
978.70 kB

TRMT2A_iCLIP_6

K-mers
trmt2a-iclip-6_trimmed_single.tar.gz
1.02 MB
FASTQ file (single-end)
fastqc
Directory
trmt2a-iclip-6.fastq.gz
114.76 MB
stderr.txt
895 B
trmt2a-iclip-6_fastqc.zip
549.02 kB
Cutadapt (single-end)
fastqc
Directory
trmt2a-iclip-6_trimmed.fastq.gz
109.20 MB
report.txt
651 B
STAR
trmt2a-iclip-6_trimmed_unmapped.out.mate1.fastq.gz
19.10 MB
trmt2a-iclip-6_trimmed.bam
193.43 MB
trmt2a-iclip-6_trimmed_SJ.out.tab
18.57 kB
trmt2a-iclip-6_trimmed.bam.bai
1.87 MB
trmt2a-iclip-6_trimmed_stats.txt
1.80 kB
iCount xlsites
trmt2a-iclip-6_trimmed_skipped.bam
2.93 kB
trmt2a-iclip-6_trimmed_singleAndMulti.bed.gz
257.49 kB
trmt2a-iclip-6_trimmed_reads_single.bed.gz
72.80 kB
trmt2a-iclip-6_trimmed_single.bedgraph
242.15 kB
trmt2a-iclip-6_trimmed_single.bed.gz
68.94 kB
iCount summary
trmt2a-iclip-6_trimmed_single_summary_type.tsv
428 B
trmt2a-iclip-6_trimmed_single_summary_gene.tsv
188.14 kB
trmt2a-iclip-6_trimmed_single_summary_subtype.tsv
995 B
iCount RNA-maps
trmt2a-iclip-6_trimmed_single.tar.gz
313.02 kB
Paraclu
trmt2a-iclip-6_trimmed_single_peaks.bed.gz
3.10 kB

TRMT2A_FICC-Seq_5

FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-5.fastq.gz
1019.62 MB
stderr.txt
955 B
trmt2a-ficc-seq-5_fastqc.zip
583.17 kB
Cutadapt (single-end)
fastqc
Directory
trmt2a-ficc-seq-5_trimmed.fastq.gz
1.04 GB
report.txt
654 B
STAR
trmt2a-ficc-seq-5_trimmed_unmapped.out.mate1.fastq.gz
83.75 MB
trmt2a-ficc-seq-5_trimmed.bam
2.27 GB
trmt2a-ficc-seq-5_trimmed_SJ.out.tab
51.08 kB
trmt2a-ficc-seq-5_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-5_trimmed.bam.bai
2.64 MB
iCount xlsites
trmt2a-ficc-seq-5_trimmed_singleAndMulti.bed.gz
472.94 kB
trmt2a-ficc-seq-5_trimmed_single.bedgraph
460.42 kB
trmt2a-ficc-seq-5_trimmed_skipped.bam
4.08 kB
trmt2a-ficc-seq-5_trimmed_single.bed.gz
128.72 kB
trmt2a-ficc-seq-5_trimmed_reads_single.bed.gz
135.43 kB
iCount summary
trmt2a-ficc-seq-5_trimmed_single_summary_type.tsv
435 B
trmt2a-ficc-seq-5_trimmed_single_summary_subtype.tsv
747 B
trmt2a-ficc-seq-5_trimmed_single_summary_gene.tsv
282.61 kB
iCount RNA-maps
trmt2a-ficc-seq-5_trimmed_single.tar.gz
296.25 kB
Paraclu
trmt2a-ficc-seq-5_trimmed_single_peaks.bed.gz
6.22 kB
K-mers
trmt2a-ficc-seq-5_trimmed_single.tar.gz
786.51 kB

TRMT2A_FICC-Seq_6

FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-6.fastq.gz
865.54 MB
trmt2a-ficc-seq-6_fastqc.zip
593.90 kB
stderr.txt
955 B
Cutadapt (single-end)
fastqc
Directory
report.txt
654 B
trmt2a-ficc-seq-6_trimmed.fastq.gz
842.82 MB
STAR
trmt2a-ficc-seq-6_trimmed.bam.bai
2.70 MB
trmt2a-ficc-seq-6_trimmed_unmapped.out.mate1.fastq.gz
96.76 MB
trmt2a-ficc-seq-6_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-6_trimmed.bam
1.90 GB
trmt2a-ficc-seq-6_trimmed_SJ.out.tab
48.36 kB
iCount xlsites
trmt2a-ficc-seq-6_trimmed_reads_single.bed.gz
108.36 kB
trmt2a-ficc-seq-6_trimmed_skipped.bam
4.27 kB
trmt2a-ficc-seq-6_trimmed_single.bedgraph
359.62 kB
trmt2a-ficc-seq-6_trimmed_single.bed.gz
104.45 kB
trmt2a-ficc-seq-6_trimmed_singleAndMulti.bed.gz
387.72 kB
iCount summary
trmt2a-ficc-seq-6_trimmed_single_summary_type.tsv
440 B
trmt2a-ficc-seq-6_trimmed_single_summary_subtype.tsv
818 B
trmt2a-ficc-seq-6_trimmed_single_summary_gene.tsv
238.87 kB
iCount RNA-maps
trmt2a-ficc-seq-6_trimmed_single.tar.gz
285.75 kB
Paraclu
trmt2a-ficc-seq-6_trimmed_single_peaks.bed.gz
5.73 kB
K-mers
trmt2a-ficc-seq-6_trimmed_single.tar.gz
915.37 kB

TRMT2A_miCLIP_2

FASTQ file (single-end)
trmt2a-miclip-2.fastq.gz
1.09 GB
fastqc
Directory
trmt2a-miclip-2_fastqc.zip
508.62 kB
stderr.txt
915 B
Cutadapt (single-end)
fastqc
Directory
report.txt
652 B
trmt2a-miclip-2_trimmed.fastq.gz
1.10 GB
STAR
trmt2a-miclip-2_trimmed.bam.bai
20.56 kB
trmt2a-miclip-2_trimmed.bam
2.44 GB
trmt2a-miclip-2_trimmed_stats.txt
1.79 kB
trmt2a-miclip-2_trimmed_unmapped.out.mate1.fastq.gz
668.45 MB
trmt2a-miclip-2_trimmed_SJ.out.tab
0 B
iCount xlsites
trmt2a-miclip-2_trimmed_skipped.bam
3.96 kB
trmt2a-miclip-2_trimmed_singleAndMulti.bed.gz
95.77 kB
trmt2a-miclip-2_trimmed_single.bedgraph
178 B
trmt2a-miclip-2_trimmed_reads_single.bed.gz
61.67 kB
trmt2a-miclip-2_trimmed_single.bed.gz
50.81 kB
iCount reads proxy
trmt2a-miclip-2fastqgz_unmapped.fastq.gz
668.45 MB
fastqc
Directory
stderr.txt
1.26 kB
trmt2a-miclip-2fastqgz_unmapped_fastqc.zip
532.66 kB
STAR
trmt2a-miclip-2fastqgz_unmapped_unmapped.out.mate1.fastq.gz
69.26 MB
trmt2a-miclip-2fastqgz_unmapped.bam
1.18 GB
trmt2a-miclip-2fastqgz_unmapped.bam.bai
2.94 MB
trmt2a-miclip-2fastqgz_unmapped_SJ.out.tab
139.59 kB
trmt2a-miclip-2fastqgz_unmapped_stats.txt
1.82 kB
iCount xlsites
trmt2a-miclip-2fastqgz_unmapped_skipped.bam
25.00 kB
trmt2a-miclip-2fastqgz_unmapped_single.bed.gz
315.80 kB
trmt2a-miclip-2fastqgz_unmapped_singleAndMulti.bed.gz
917.69 kB
trmt2a-miclip-2fastqgz_unmapped_reads_single.bed.gz
365.28 kB
trmt2a-miclip-2fastqgz_unmapped_single.bedgraph
1.16 MB
iCount summary
trmt2a-miclip-2fastqgz_unmapped_single_summary_gene.tsv
807.87 kB
trmt2a-miclip-2fastqgz_unmapped_single_summary_type.tsv
474 B
trmt2a-miclip-2fastqgz_unmapped_single_summary_subtype.tsv
1.04 kB
iCount RNA-maps
trmt2a-miclip-2fastqgz_unmapped_single.tar.gz
481.68 kB
Paraclu
trmt2a-miclip-2fastqgz_unmapped_single_peaks.bed.gz
7.73 kB
K-mers
trmt2a-miclip-2fastqgz_unmapped_single.tar.gz
2.13 MB

No Sample

FASTQ file (single-end)
trmt2a-iclip-3.fastq.gz
61.08 MB
stderr.txt
895 B
fastqc
Directory
trmt2a-iclip-3_fastqc.zip
489.02 kB
iCount RNA-maps
trmt2a-ficc-seq-2_trimmed_single.tar.gz
257.54 kB
Paraclu
trmt2a-miclip-1fastqgz_unmapped_single_peaks.bed.gz
5.04 kB
iCount summary
trmt2a-ficc-seq-4_trimmed_single_summary_type.tsv
436 B
trmt2a-ficc-seq-4_trimmed_single_summary_subtype.tsv
676 B
trmt2a-ficc-seq-4_trimmed_single_summary_gene.tsv
230.57 kB
K-mers
trmt2a-iclip-6_trimmed_single.tar.gz
1.02 MB
iCount RNA-maps
trmt2a-ficc-seq-3_trimmed_single.tar.gz
260.42 kB
K-mers
trmt2a-iclip-3_trimmed_single.tar.gz
713.10 kB
FASTQ file (single-end)
20170207_Hussain.fastq.gz
3.88 GB
fastqc
Directory
stderr.txt
935 B
20170207_Hussain_fastqc.zip
589.69 kB
Upload iCount sample annotation
iclip_annotation_template_20170207_Hussain.xlsx
24.02 kB
iclip_annotation_template_20170207_Hussain.tab.gz
691 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
400 B
FASTQ file (single-end)
fastqc
Directory
trmt2a-iclip-1.fastq.gz
672.84 MB
stderr.txt
895 B
trmt2a-iclip-1_fastqc.zip
573.07 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
895 B
trmt2a-iclip-2.fastq.gz
119.07 MB
trmt2a-iclip-2_fastqc.zip
526.69 kB
FASTQ file (single-end)
trmt2a-ficc-seq-1.fastq.gz
702.08 MB
fastqc
Directory
trmt2a-ficc-seq-1_fastqc.zip
626.61 kB
stderr.txt
955 B
FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-2.fastq.gz
407.54 MB
stderr.txt
955 B
trmt2a-ficc-seq-2_fastqc.zip
595.36 kB
FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-3.fastq.gz
1.00 GB
trmt2a-ficc-seq-3_fastqc.zip
630.98 kB
stderr.txt
955 B
Cutadapt (single-end)
report.txt
653 B
fastqc
Directory
trmt2a-ficc-seq-3_trimmed.fastq.gz
1.01 GB
STAR
trmt2a-ficc-seq-3_trimmed.bam
2.23 GB
trmt2a-ficc-seq-3_trimmed_unmapped.out.mate1.fastq.gz
81.39 MB
trmt2a-ficc-seq-3_trimmed.bam.bai
2.51 MB
trmt2a-ficc-seq-3_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-3_trimmed_SJ.out.tab
28.72 kB
iCount xlsites
trmt2a-ficc-seq-3_trimmed_singleAndMulti.bed.gz
268.33 kB
trmt2a-ficc-seq-3_trimmed_single.bed.gz
66.99 kB
trmt2a-ficc-seq-3_trimmed_reads_single.bed.gz
71.12 kB
trmt2a-ficc-seq-3_trimmed_skipped.bam
3.72 kB
trmt2a-ficc-seq-3_trimmed_single.bedgraph
230.38 kB
iCount summary
trmt2a-ficc-seq-3_trimmed_single_summary_type.tsv
438 B
trmt2a-ficc-seq-3_trimmed_single_summary_gene.tsv
150.90 kB
trmt2a-ficc-seq-3_trimmed_single_summary_subtype.tsv
605 B
Paraclu
trmt2a-ficc-seq-3_trimmed_single_peaks.bed.gz
4.33 kB
K-mers
trmt2a-ficc-seq-3_trimmed_single.tar.gz
866.24 kB
Cutadapt (single-end)
trmt2a-ficc-seq-2_trimmed.fastq.gz
422.77 MB
fastqc
Directory
report.txt
653 B
STAR
trmt2a-ficc-seq-2_trimmed_unmapped.out.mate1.fastq.gz
39.24 MB
trmt2a-ficc-seq-2_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-2_trimmed.bam.bai
2.01 MB
trmt2a-ficc-seq-2_trimmed.bam
867.25 MB
trmt2a-ficc-seq-2_trimmed_SJ.out.tab
16.86 kB
iCount xlsites
trmt2a-ficc-seq-2_trimmed_single.bed.gz
47.41 kB
trmt2a-ficc-seq-2_trimmed_single.bedgraph
165.95 kB
trmt2a-ficc-seq-2_trimmed_skipped.bam
3.30 kB
trmt2a-ficc-seq-2_trimmed_reads_single.bed.gz
51.07 kB
trmt2a-ficc-seq-2_trimmed_singleAndMulti.bed.gz
181.26 kB
iCount summary
trmt2a-ficc-seq-2_trimmed_single_summary_type.tsv
435 B
trmt2a-ficc-seq-2_trimmed_single_summary_gene.tsv
97.54 kB
trmt2a-ficc-seq-2_trimmed_single_summary_subtype.tsv
604 B
Paraclu
trmt2a-ficc-seq-2_trimmed_single_peaks.bed.gz
3.35 kB
K-mers
trmt2a-ficc-seq-2_trimmed_single.tar.gz
879.15 kB
Cutadapt (single-end)
report.txt
653 B
fastqc
Directory
trmt2a-ficc-seq-1_trimmed.fastq.gz
724.32 MB
STAR
trmt2a-ficc-seq-1_trimmed_unmapped.out.mate1.fastq.gz
52.56 MB
trmt2a-ficc-seq-1_trimmed.bam
1.53 GB
trmt2a-ficc-seq-1_trimmed.bam.bai
2.34 MB
trmt2a-ficc-seq-1_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-1_trimmed_SJ.out.tab
26.60 kB
iCount xlsites
trmt2a-ficc-seq-1_trimmed_skipped.bam
3.35 kB
trmt2a-ficc-seq-1_trimmed_reads_single.bed.gz
65.69 kB
trmt2a-ficc-seq-1_trimmed_singleAndMulti.bed.gz
236.91 kB
trmt2a-ficc-seq-1_trimmed_single.bed.gz
62.03 kB
trmt2a-ficc-seq-1_trimmed_single.bedgraph
213.49 kB
iCount summary
trmt2a-ficc-seq-1_trimmed_single_summary_type.tsv
435 B
trmt2a-ficc-seq-1_trimmed_single_summary_subtype.tsv
672 B
trmt2a-ficc-seq-1_trimmed_single_summary_gene.tsv
141.31 kB
iCount RNA-maps
trmt2a-ficc-seq-1_trimmed_single.tar.gz
276.30 kB
Paraclu
trmt2a-ficc-seq-1_trimmed_single_peaks.bed.gz
4.23 kB
K-mers
trmt2a-ficc-seq-1_trimmed_single.tar.gz
862.76 kB
Cutadapt (single-end)
fastqc
Directory
trmt2a-iclip-3_trimmed.fastq.gz
61.91 MB
report.txt
649 B
STAR
trmt2a-iclip-3_trimmed_stats.txt
1.80 kB
trmt2a-iclip-3_trimmed_unmapped.out.mate1.fastq.gz
16.77 MB
trmt2a-iclip-3_trimmed.bam.bai
1.72 MB
trmt2a-iclip-3_trimmed_SJ.out.tab
10.11 kB
trmt2a-iclip-3_trimmed.bam
125.66 MB
trmt2a-iclip-3_trimmed.bw
19.96 kB
iCount xlsites
trmt2a-iclip-3_trimmed_reads_single.bed.gz
53.39 kB
trmt2a-iclip-3_trimmed_skipped.bam
2.93 kB
trmt2a-iclip-3_trimmed_single.bed.gz
47.50 kB
trmt2a-iclip-3_trimmed_single.bedgraph
170.47 kB
trmt2a-iclip-3_trimmed_singleAndMulti.bed.gz
192.11 kB
iCount summary
trmt2a-iclip-3_trimmed_single_summary_type.tsv
423 B
trmt2a-iclip-3_trimmed_single_summary_gene.tsv
160.62 kB
trmt2a-iclip-3_trimmed_single_summary_subtype.tsv
987 B
iCount RNA-maps
trmt2a-iclip-3_trimmed_single.tar.gz
353.76 kB
Paraclu
trmt2a-iclip-3_trimmed_single_peaks.bed.gz
2.14 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
650 B
trmt2a-iclip-2_trimmed.fastq.gz
121.76 MB
STAR
trmt2a-iclip-2_trimmed.bam.bai
1.87 MB
trmt2a-iclip-2_trimmed_unmapped.out.mate1.fastq.gz
22.01 MB
trmt2a-iclip-2_trimmed_stats.txt
1.81 kB
trmt2a-iclip-2_trimmed_SJ.out.tab
14.46 kB
trmt2a-iclip-2_trimmed.bam
246.95 MB
iCount xlsites
trmt2a-iclip-2_trimmed_skipped.bam
2.93 kB
trmt2a-iclip-2_trimmed_single.bed.gz
58.97 kB
trmt2a-iclip-2_trimmed_singleAndMulti.bed.gz
247.95 kB
trmt2a-iclip-2_trimmed_reads_single.bed.gz
64.30 kB
trmt2a-iclip-2_trimmed_single.bedgraph
209.17 kB
iCount summary
trmt2a-iclip-2_trimmed_single_summary_subtype.tsv
991 B
trmt2a-iclip-2_trimmed_single_summary_type.tsv
423 B
trmt2a-iclip-2_trimmed_single_summary_gene.tsv
163.05 kB
iCount RNA-maps
trmt2a-iclip-2_trimmed_single.tar.gz
338.65 kB
Paraclu
trmt2a-iclip-2_trimmed_single_peaks.bed.gz
2.81 kB
K-mers
trmt2a-iclip-2_trimmed_single.tar.gz
760.17 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
650 B
trmt2a-iclip-1_trimmed.fastq.gz
698.39 MB
STAR
trmt2a-iclip-1_trimmed.bam.bai
2.39 MB
trmt2a-iclip-1_trimmed_unmapped.out.mate1.fastq.gz
41.53 MB
trmt2a-iclip-1_trimmed_stats.txt
1.81 kB
trmt2a-iclip-1_trimmed_SJ.out.tab
43.53 kB
trmt2a-iclip-1_trimmed.bam
1.34 GB
iCount xlsites
trmt2a-iclip-1_trimmed_skipped.bam
3.11 kB
trmt2a-iclip-1_trimmed_singleAndMulti.bed.gz
596.66 kB
trmt2a-iclip-1_trimmed_single.bed.gz
141.96 kB
trmt2a-iclip-1_trimmed_reads_single.bed.gz
152.91 kB
trmt2a-iclip-1_trimmed_single.bedgraph
512.04 kB
iCount summary
trmt2a-iclip-1_trimmed_single_summary_subtype.tsv
1014 B
trmt2a-iclip-1_trimmed_single_summary_gene.tsv
348.27 kB
trmt2a-iclip-1_trimmed_single_summary_type.tsv
434 B
iCount RNA-maps
trmt2a-iclip-1_trimmed_single.tar.gz
357.67 kB
Paraclu
trmt2a-iclip-1_trimmed_single_peaks.bed.gz
6.17 kB
K-mers
trmt2a-iclip-1_trimmed_single.tar.gz
997.61 kB
FASTQ file (single-end)
fastqc
Directory
20170310_Hussain_fastqc.zip
585.30 kB
stderr.txt
935 B
20170310_Hussain.fastq.gz
4.49 GB
Upload iCount sample annotation
iclip_annotation_template_20170310_Hussain.xlsx
24.03 kB
iclip_annotation_template_20170310_Hussain.tab.gz
690 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
400 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
895 B
trmt2a-iclip-4_fastqc.zip
505.71 kB
trmt2a-iclip-4.fastq.gz
276.02 MB
FASTQ file (single-end)
fastqc
Directory
20170309_Hussain.fastq.gz
3.67 GB
stderr.txt
935 B
20170309_Hussain_fastqc.zip
545.20 kB
FASTQ file (single-end)
trmt2a-iclip-5.fastq.gz
237.70 MB
trmt2a-iclip-5_fastqc.zip
528.71 kB
stderr.txt
895 B
fastqc
Directory
FASTQ file (single-end)
fastqc
Directory
trmt2a-iclip-6.fastq.gz
114.76 MB
stderr.txt
895 B
trmt2a-iclip-6_fastqc.zip
549.02 kB
FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-4.fastq.gz
946.53 MB
stderr.txt
955 B
trmt2a-ficc-seq-4_fastqc.zip
618.24 kB
FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-5.fastq.gz
1019.62 MB
stderr.txt
955 B
trmt2a-ficc-seq-5_fastqc.zip
583.17 kB
FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-6.fastq.gz
865.54 MB
trmt2a-ficc-seq-6_fastqc.zip
593.90 kB
stderr.txt
955 B
Cutadapt (single-end)
fastqc
Directory
report.txt
654 B
trmt2a-ficc-seq-6_trimmed.fastq.gz
842.82 MB
STAR
trmt2a-ficc-seq-6_trimmed.bam.bai
2.70 MB
trmt2a-ficc-seq-6_trimmed_unmapped.out.mate1.fastq.gz
96.76 MB
trmt2a-ficc-seq-6_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-6_trimmed.bam
1.90 GB
trmt2a-ficc-seq-6_trimmed_SJ.out.tab
48.36 kB
iCount xlsites
trmt2a-ficc-seq-6_trimmed_reads_single.bed.gz
108.36 kB
trmt2a-ficc-seq-6_trimmed_skipped.bam
4.27 kB
trmt2a-ficc-seq-6_trimmed_single.bedgraph
359.62 kB
trmt2a-ficc-seq-6_trimmed_single.bed.gz
104.45 kB
trmt2a-ficc-seq-6_trimmed_singleAndMulti.bed.gz
387.72 kB
iCount summary
trmt2a-ficc-seq-6_trimmed_single_summary_type.tsv
440 B
trmt2a-ficc-seq-6_trimmed_single_summary_subtype.tsv
818 B
trmt2a-ficc-seq-6_trimmed_single_summary_gene.tsv
238.87 kB
iCount RNA-maps
trmt2a-ficc-seq-6_trimmed_single.tar.gz
285.75 kB
Paraclu
trmt2a-ficc-seq-6_trimmed_single_peaks.bed.gz
5.73 kB
K-mers
trmt2a-ficc-seq-6_trimmed_single.tar.gz
915.37 kB
Cutadapt (single-end)
fastqc
Directory
trmt2a-ficc-seq-5_trimmed.fastq.gz
1.04 GB
report.txt
654 B
STAR
trmt2a-ficc-seq-5_trimmed_unmapped.out.mate1.fastq.gz
83.75 MB
trmt2a-ficc-seq-5_trimmed.bam
2.27 GB
trmt2a-ficc-seq-5_trimmed_SJ.out.tab
51.08 kB
trmt2a-ficc-seq-5_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-5_trimmed.bam.bai
2.64 MB
iCount xlsites
trmt2a-ficc-seq-5_trimmed_singleAndMulti.bed.gz
472.94 kB
trmt2a-ficc-seq-5_trimmed_single.bedgraph
460.42 kB
trmt2a-ficc-seq-5_trimmed_skipped.bam
4.08 kB
trmt2a-ficc-seq-5_trimmed_single.bed.gz
128.72 kB
trmt2a-ficc-seq-5_trimmed_reads_single.bed.gz
135.43 kB
iCount summary
trmt2a-ficc-seq-5_trimmed_single_summary_type.tsv
435 B
trmt2a-ficc-seq-5_trimmed_single_summary_subtype.tsv
747 B
trmt2a-ficc-seq-5_trimmed_single_summary_gene.tsv
282.61 kB
iCount RNA-maps
trmt2a-ficc-seq-5_trimmed_single.tar.gz
296.25 kB
Paraclu
trmt2a-ficc-seq-5_trimmed_single_peaks.bed.gz
6.22 kB
K-mers
trmt2a-ficc-seq-5_trimmed_single.tar.gz
786.51 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
654 B
trmt2a-ficc-seq-4_trimmed.fastq.gz
990.93 MB
Cutadapt (single-end)
fastqc
Directory
trmt2a-iclip-6_trimmed.fastq.gz
109.20 MB
report.txt
651 B
STAR
trmt2a-iclip-6_trimmed_unmapped.out.mate1.fastq.gz
19.10 MB
trmt2a-iclip-6_trimmed.bam
193.43 MB
trmt2a-iclip-6_trimmed_SJ.out.tab
18.57 kB
trmt2a-iclip-6_trimmed.bam.bai
1.87 MB
trmt2a-iclip-6_trimmed_stats.txt
1.80 kB
iCount xlsites
trmt2a-iclip-6_trimmed_skipped.bam
2.93 kB
trmt2a-iclip-6_trimmed_singleAndMulti.bed.gz
257.49 kB
trmt2a-iclip-6_trimmed_reads_single.bed.gz
72.80 kB
trmt2a-iclip-6_trimmed_single.bedgraph
242.15 kB
trmt2a-iclip-6_trimmed_single.bed.gz
68.94 kB
iCount summary
trmt2a-iclip-6_trimmed_single_summary_type.tsv
428 B
trmt2a-iclip-6_trimmed_single_summary_gene.tsv
188.14 kB
trmt2a-iclip-6_trimmed_single_summary_subtype.tsv
995 B
iCount RNA-maps
trmt2a-iclip-6_trimmed_single.tar.gz
313.02 kB
STAR
trmt2a-ficc-seq-4_trimmed.bam
2.21 GB
trmt2a-ficc-seq-4_trimmed_unmapped.out.mate1.fastq.gz
66.59 MB
trmt2a-ficc-seq-4_trimmed.bam.bai
2.45 MB
trmt2a-ficc-seq-4_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-4_trimmed_SJ.out.tab
51.14 kB
iCount xlsites
trmt2a-ficc-seq-4_trimmed_single.bedgraph
350.36 kB
trmt2a-ficc-seq-4_trimmed_skipped.bam
5.05 kB
trmt2a-ficc-seq-4_trimmed_singleAndMulti.bed.gz
357.90 kB
trmt2a-ficc-seq-4_trimmed_single.bed.gz
101.91 kB
trmt2a-ficc-seq-4_trimmed_reads_single.bed.gz
106.21 kB
iCount RNA-maps
trmt2a-ficc-seq-4_trimmed_single.tar.gz
286.90 kB
Paraclu
trmt2a-ficc-seq-4_trimmed_single_peaks.bed.gz
6.10 kB
K-mers
trmt2a-ficc-seq-4_trimmed_single.tar.gz
945.22 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
650 B
trmt2a-iclip-5_trimmed.fastq.gz
240.79 MB
STAR
trmt2a-iclip-5_trimmed.bam.bai
2.06 MB
trmt2a-iclip-5_trimmed_SJ.out.tab
26.50 kB
trmt2a-iclip-5_trimmed_stats.txt
1.81 kB
trmt2a-iclip-5_trimmed_unmapped.out.mate1.fastq.gz
38.71 MB
trmt2a-iclip-5_trimmed.bam
476.32 MB
iCount xlsites
trmt2a-iclip-5_trimmed_singleAndMulti.bed.gz
329.15 kB
trmt2a-iclip-5_trimmed_skipped.bam
2.93 kB
trmt2a-iclip-5_trimmed_reads_single.bed.gz
93.80 kB
trmt2a-iclip-5_trimmed_single.bed.gz
88.06 kB
trmt2a-iclip-5_trimmed_single.bedgraph
310.40 kB
iCount summary
trmt2a-iclip-5_trimmed_single_summary_gene.tsv
223.29 kB
trmt2a-iclip-5_trimmed_single_summary_subtype.tsv
996 B
trmt2a-iclip-5_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
trmt2a-iclip-5_trimmed_single.tar.gz
331.29 kB
Paraclu
trmt2a-iclip-5_trimmed_single_peaks.bed.gz
3.49 kB
K-mers
trmt2a-iclip-5_trimmed_single.tar.gz
978.70 kB
Cutadapt (single-end)
report.txt
650 B
fastqc
Directory
trmt2a-iclip-4_trimmed.fastq.gz
284.76 MB
STAR
trmt2a-iclip-4_trimmed_unmapped.out.mate1.fastq.gz
28.33 MB
trmt2a-iclip-4_trimmed.bam
533.94 MB
trmt2a-iclip-4_trimmed_stats.txt
1.81 kB
trmt2a-iclip-4_trimmed_SJ.out.tab
35.12 kB
trmt2a-iclip-4_trimmed.bam.bai
2.21 MB
iCount xlsites
trmt2a-iclip-4_trimmed_skipped.bam
3.20 kB
trmt2a-iclip-4_trimmed_single.bedgraph
400.30 kB
trmt2a-iclip-4_trimmed_single.bed.gz
111.05 kB
trmt2a-iclip-4_trimmed_singleAndMulti.bed.gz
457.23 kB
trmt2a-iclip-4_trimmed_reads_single.bed.gz
119.37 kB
iCount summary
trmt2a-iclip-4_trimmed_single_summary_gene.tsv
284.02 kB
trmt2a-iclip-4_trimmed_single_summary_type.tsv
429 B
trmt2a-iclip-4_trimmed_single_summary_subtype.tsv
1001 B
iCount RNA-maps
trmt2a-iclip-4_trimmed_single.tar.gz
332.45 kB
Paraclu
trmt2a-iclip-4_trimmed_single_peaks.bed.gz
3.41 kB
K-mers
trmt2a-iclip-4_trimmed_single.tar.gz
425.28 kB
Upload iCount sample annotation
iclip_annotation_template_20170309_Hussain.tab.gz
631 B
iclip_annotation_template_20170309_Hussain.xlsx
22.19 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
275 B
FASTQ file (single-end)
fastqc
Directory
trmt2a-miclip-1.fastq.gz
778.87 MB
trmt2a-miclip-1_fastqc.zip
462.12 kB
stderr.txt
915 B
FASTQ file (single-end)
trmt2a-miclip-2.fastq.gz
1.09 GB
fastqc
Directory
trmt2a-miclip-2_fastqc.zip
508.62 kB
stderr.txt
915 B
Cutadapt (single-end)
fastqc
Directory
trmt2a-miclip-1_trimmed.fastq.gz
797.33 MB
report.txt
651 B
STAR
trmt2a-miclip-1_trimmed.bam.bai
20.56 kB
trmt2a-miclip-1_trimmed_unmapped.out.mate1.fastq.gz
458.40 MB
trmt2a-miclip-1_trimmed.bam
1.62 GB
trmt2a-miclip-1_trimmed_stats.txt
1.79 kB
trmt2a-miclip-1_trimmed_SJ.out.tab
0 B
iCount xlsites
trmt2a-miclip-1_trimmed_skipped.bam
3.96 kB
trmt2a-miclip-1_trimmed_singleAndMulti.bed.gz
70.41 kB
trmt2a-miclip-1_trimmed_single.bed.gz
33.00 kB
trmt2a-miclip-1_trimmed_reads_single.bed.gz
40.44 kB
trmt2a-miclip-1_trimmed_single.bedgraph
178 B
iCount reads proxy
fastqc
Directory
trmt2a-miclip-1fastqgz_unmapped.fastq.gz
458.40 MB
stderr.txt
1.26 kB
trmt2a-miclip-1fastqgz_unmapped_fastqc.zip
469.02 kB
STAR
trmt2a-miclip-1fastqgz_unmapped.bam.bai
2.43 MB
trmt2a-miclip-1fastqgz_unmapped.bam
725.51 MB
trmt2a-miclip-1fastqgz_unmapped_unmapped.out.mate1.fastq.gz
55.57 MB
trmt2a-miclip-1fastqgz_unmapped_SJ.out.tab
56.88 kB
trmt2a-miclip-1fastqgz_unmapped_stats.txt
1.81 kB
iCount xlsites
trmt2a-miclip-1fastqgz_unmapped_single.bed.gz
163.08 kB
trmt2a-miclip-1fastqgz_unmapped_singleAndMulti.bed.gz
564.13 kB
trmt2a-miclip-1fastqgz_unmapped_skipped.bam
3.24 kB
trmt2a-miclip-1fastqgz_unmapped_reads_single.bed.gz
186.21 kB
trmt2a-miclip-1fastqgz_unmapped_single.bedgraph
597.67 kB
iCount summary
trmt2a-miclip-1fastqgz_unmapped_single_summary_type.tsv
470 B
trmt2a-miclip-1fastqgz_unmapped_single_summary_subtype.tsv
978 B
trmt2a-miclip-1fastqgz_unmapped_single_summary_gene.tsv
501.29 kB
iCount RNA-maps
trmt2a-miclip-1fastqgz_unmapped_single.tar.gz
398.02 kB
K-mers
trmt2a-miclip-1fastqgz_unmapped_single.tar.gz
1.61 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
652 B
trmt2a-miclip-2_trimmed.fastq.gz
1.10 GB
STAR
trmt2a-miclip-2_trimmed.bam.bai
20.56 kB
trmt2a-miclip-2_trimmed.bam
2.44 GB
trmt2a-miclip-2_trimmed_stats.txt
1.79 kB
trmt2a-miclip-2_trimmed_unmapped.out.mate1.fastq.gz
668.45 MB
trmt2a-miclip-2_trimmed_SJ.out.tab
0 B
iCount xlsites
trmt2a-miclip-2_trimmed_skipped.bam
3.96 kB
trmt2a-miclip-2_trimmed_singleAndMulti.bed.gz
95.77 kB
trmt2a-miclip-2_trimmed_single.bedgraph
178 B
trmt2a-miclip-2_trimmed_reads_single.bed.gz
61.67 kB
trmt2a-miclip-2_trimmed_single.bed.gz
50.81 kB
iCount reads proxy
trmt2a-miclip-2fastqgz_unmapped.fastq.gz
668.45 MB
fastqc
Directory
stderr.txt
1.26 kB
trmt2a-miclip-2fastqgz_unmapped_fastqc.zip
532.66 kB
STAR
trmt2a-miclip-2fastqgz_unmapped_unmapped.out.mate1.fastq.gz
69.26 MB
trmt2a-miclip-2fastqgz_unmapped.bam
1.18 GB
trmt2a-miclip-2fastqgz_unmapped.bam.bai
2.94 MB
trmt2a-miclip-2fastqgz_unmapped_SJ.out.tab
139.59 kB
trmt2a-miclip-2fastqgz_unmapped_stats.txt
1.82 kB
iCount xlsites
trmt2a-miclip-2fastqgz_unmapped_skipped.bam
25.00 kB
trmt2a-miclip-2fastqgz_unmapped_single.bed.gz
315.80 kB
trmt2a-miclip-2fastqgz_unmapped_singleAndMulti.bed.gz
917.69 kB
trmt2a-miclip-2fastqgz_unmapped_reads_single.bed.gz
365.28 kB
trmt2a-miclip-2fastqgz_unmapped_single.bedgraph
1.16 MB
iCount summary
trmt2a-miclip-2fastqgz_unmapped_single_summary_gene.tsv
807.87 kB
trmt2a-miclip-2fastqgz_unmapped_single_summary_type.tsv
474 B
trmt2a-miclip-2fastqgz_unmapped_single_summary_subtype.tsv
1.04 kB
iCount RNA-maps
trmt2a-miclip-2fastqgz_unmapped_single.tar.gz
481.68 kB
Paraclu
trmt2a-miclip-2fastqgz_unmapped_single_peaks.bed.gz
7.73 kB
K-mers
trmt2a-miclip-2fastqgz_unmapped_single.tar.gz
2.13 MB
Paraclu
trmt2a-iclip-6_trimmed_single_peaks.bed.gz
3.10 kB

TRMT2A_iCLIP_4

FASTQ file (single-end)
fastqc
Directory
stderr.txt
895 B
trmt2a-iclip-4_fastqc.zip
505.71 kB
trmt2a-iclip-4.fastq.gz
276.02 MB
Cutadapt (single-end)
report.txt
650 B
fastqc
Directory
trmt2a-iclip-4_trimmed.fastq.gz
284.76 MB
STAR
trmt2a-iclip-4_trimmed_unmapped.out.mate1.fastq.gz
28.33 MB
trmt2a-iclip-4_trimmed.bam
533.94 MB
trmt2a-iclip-4_trimmed_stats.txt
1.81 kB
trmt2a-iclip-4_trimmed_SJ.out.tab
35.12 kB
trmt2a-iclip-4_trimmed.bam.bai
2.21 MB
iCount xlsites
trmt2a-iclip-4_trimmed_skipped.bam
3.20 kB
trmt2a-iclip-4_trimmed_single.bedgraph
400.30 kB
trmt2a-iclip-4_trimmed_single.bed.gz
111.05 kB
trmt2a-iclip-4_trimmed_singleAndMulti.bed.gz
457.23 kB
trmt2a-iclip-4_trimmed_reads_single.bed.gz
119.37 kB
iCount summary
trmt2a-iclip-4_trimmed_single_summary_gene.tsv
284.02 kB
trmt2a-iclip-4_trimmed_single_summary_type.tsv
429 B
trmt2a-iclip-4_trimmed_single_summary_subtype.tsv
1001 B
iCount RNA-maps
trmt2a-iclip-4_trimmed_single.tar.gz
332.45 kB
Paraclu
trmt2a-iclip-4_trimmed_single_peaks.bed.gz
3.41 kB
K-mers
trmt2a-iclip-4_trimmed_single.tar.gz
425.28 kB

TRMT2A_FICC-Seq_4

iCount summary
trmt2a-ficc-seq-4_trimmed_single_summary_type.tsv
436 B
trmt2a-ficc-seq-4_trimmed_single_summary_subtype.tsv
676 B
trmt2a-ficc-seq-4_trimmed_single_summary_gene.tsv
230.57 kB
FASTQ file (single-end)
fastqc
Directory
trmt2a-ficc-seq-4.fastq.gz
946.53 MB
stderr.txt
955 B
trmt2a-ficc-seq-4_fastqc.zip
618.24 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
654 B
trmt2a-ficc-seq-4_trimmed.fastq.gz
990.93 MB
STAR
trmt2a-ficc-seq-4_trimmed.bam
2.21 GB
trmt2a-ficc-seq-4_trimmed_unmapped.out.mate1.fastq.gz
66.59 MB
trmt2a-ficc-seq-4_trimmed.bam.bai
2.45 MB
trmt2a-ficc-seq-4_trimmed_stats.txt
1.81 kB
trmt2a-ficc-seq-4_trimmed_SJ.out.tab
51.14 kB
iCount xlsites
trmt2a-ficc-seq-4_trimmed_single.bedgraph
350.36 kB
trmt2a-ficc-seq-4_trimmed_skipped.bam
5.05 kB
trmt2a-ficc-seq-4_trimmed_singleAndMulti.bed.gz
357.90 kB
trmt2a-ficc-seq-4_trimmed_single.bed.gz
101.91 kB
trmt2a-ficc-seq-4_trimmed_reads_single.bed.gz
106.21 kB
iCount RNA-maps
trmt2a-ficc-seq-4_trimmed_single.tar.gz
286.90 kB
Paraclu
trmt2a-ficc-seq-4_trimmed_single_peaks.bed.gz
6.10 kB
K-mers
trmt2a-ficc-seq-4_trimmed_single.tar.gz
945.22 kB

TRMT2A_miCLIP_1

Paraclu
trmt2a-miclip-1fastqgz_unmapped_single_peaks.bed.gz
5.04 kB
FASTQ file (single-end)
fastqc
Directory
trmt2a-miclip-1.fastq.gz
778.87 MB
trmt2a-miclip-1_fastqc.zip
462.12 kB
stderr.txt
915 B
Cutadapt (single-end)
fastqc
Directory
trmt2a-miclip-1_trimmed.fastq.gz
797.33 MB
report.txt
651 B
STAR
trmt2a-miclip-1_trimmed.bam.bai
20.56 kB
trmt2a-miclip-1_trimmed_unmapped.out.mate1.fastq.gz
458.40 MB
trmt2a-miclip-1_trimmed.bam
1.62 GB
trmt2a-miclip-1_trimmed_stats.txt
1.79 kB
trmt2a-miclip-1_trimmed_SJ.out.tab
0 B
iCount xlsites
trmt2a-miclip-1_trimmed_skipped.bam
3.96 kB
trmt2a-miclip-1_trimmed_singleAndMulti.bed.gz
70.41 kB
trmt2a-miclip-1_trimmed_single.bed.gz
33.00 kB
trmt2a-miclip-1_trimmed_reads_single.bed.gz
40.44 kB
trmt2a-miclip-1_trimmed_single.bedgraph
178 B
iCount reads proxy
fastqc
Directory
trmt2a-miclip-1fastqgz_unmapped.fastq.gz
458.40 MB
stderr.txt
1.26 kB
trmt2a-miclip-1fastqgz_unmapped_fastqc.zip
469.02 kB
STAR
trmt2a-miclip-1fastqgz_unmapped.bam.bai
2.43 MB
trmt2a-miclip-1fastqgz_unmapped.bam
725.51 MB
trmt2a-miclip-1fastqgz_unmapped_unmapped.out.mate1.fastq.gz
55.57 MB
trmt2a-miclip-1fastqgz_unmapped_SJ.out.tab
56.88 kB
trmt2a-miclip-1fastqgz_unmapped_stats.txt
1.81 kB
iCount xlsites
trmt2a-miclip-1fastqgz_unmapped_single.bed.gz
163.08 kB
trmt2a-miclip-1fastqgz_unmapped_singleAndMulti.bed.gz
564.13 kB
trmt2a-miclip-1fastqgz_unmapped_skipped.bam
3.24 kB
trmt2a-miclip-1fastqgz_unmapped_reads_single.bed.gz
186.21 kB
trmt2a-miclip-1fastqgz_unmapped_single.bedgraph
597.67 kB
iCount summary
trmt2a-miclip-1fastqgz_unmapped_single_summary_type.tsv
470 B
trmt2a-miclip-1fastqgz_unmapped_single_summary_subtype.tsv
978 B
trmt2a-miclip-1fastqgz_unmapped_single_summary_gene.tsv
501.29 kB
iCount RNA-maps
trmt2a-miclip-1fastqgz_unmapped_single.tar.gz
398.02 kB
K-mers
trmt2a-miclip-1fastqgz_unmapped_single.tar.gz
1.61 MB