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Folder iconCD8_miCLIP_FACS

Paulo Gameiro
Sept. 17, 2019
miCLIP and RNA-seq (mock miCLIP) performed on total RNA from FACS-isolated populations of human CD8 T-cells

m6A_CD8 T cells_CCR7pos_ROpos_totalRNA_Donor1_20190312_JU

Paraclu
peaks.bed.gz
5.89 kB
iCount RNA-maps
results.tar.gz
658.18 kB
K-mers
positional_distribution_intron.tsv
172.07 kB
intron region.png
168.53 kB
other_exon region.png
277.80 kB
kmer_frequency_ncRNA.tsv
5.86 kB
ncRNA region.png
311.81 kB
kmer_frequency_intron.tsv
5.18 kB
kmer_frequency_genome.tsv
5.83 kB
utr3 region.png
231.66 kB
positional_distribution_ncRNA.tsv
436.18 kB
positional_distribution_utr3.tsv
178.22 kB
kmer_frequency_utr3.tsv
4.71 kB
genome region.png
337.47 kB
positional_distribution_genome.tsv
502.46 kB
positional_distribution_other_exon.tsv
278.33 kB
kmer_frequency_other_exon.tsv
5.71 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
8.22 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam.bai
3.24 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_SJ.out.tab
275.23 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam
49.31 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bw
25.32 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
55.95 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
80.26 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
58.18 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bed.gz
970.95 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
2.03 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bedgraph
4.08 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.04 MB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
22.90 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam
115.53 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju.fastq.gz
74.21 MB
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_fastqc.zip
494.61 kB
Cutadapt (single-end)
report.txt
724 B
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
75.82 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
478.60 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.fastq.gz
22.90 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_fastqc.zip
492.86 kB
stderr.txt
2.12 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
467 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.08 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB

m6A_CD8 T cells_CCR7pos_ROpos_totalRNA_Donor2_20190312_JU

STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
7.58 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped.bw
26.99 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped.bam.bai
3.48 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped.bam
52.56 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_SJ.out.tab
311.63 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
471 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.14 MB
Paraclu
peaks.bed.gz
7.85 kB
iCount RNA-maps
results.tar.gz
706.88 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped.fastq.gz
23.34 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_fastqc.zip
485.89 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
59.99 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
88.15 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
61.95 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_fastqc.zip
479.36 kB
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju.fastq.gz
77.69 MB
stderr.txt
1.71 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_skipped.bam
3.32 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.26 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single.bed.gz
1.16 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single.bedgraph
5.07 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
2.53 MB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.49 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
23.34 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam
122.17 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
Cutadapt (single-end)
report.txt
724 B
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.fastq.gz
79.55 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
481.16 kB
K-mers
kmer_frequency_intron.tsv
5.24 kB
positional_distribution_ncRNA.tsv
453.31 kB
other_exon region.png
297.26 kB
positional_distribution_utr3.tsv
232.00 kB
positional_distribution_intron.tsv
168.40 kB
kmer_frequency_utr3.tsv
5.48 kB
kmer_frequency_ncRNA.tsv
5.88 kB
genome region.png
330.41 kB
ncRNA region.png
307.75 kB
positional_distribution_genome.tsv
521.41 kB
utr3 region.png
285.10 kB
positional_distribution_other_exon.tsv
348.75 kB
kmer_frequency_other_exon.tsv
5.85 kB
intron region.png
227.37 kB
kmer_frequency_genome.tsv
5.83 kB

m6A_CD8 T cells_CCR7neg_ROneg_totalRNA_Donor2_20190312_JU

iCount RNA-maps
results.tar.gz
734.96 kB
Paraclu
peaks.bed.gz
9.74 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
8.52 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped.bam.bai
3.45 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped.bam
56.93 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped.bw
27.25 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_SJ.out.tab
359.78 kB
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.16 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
95.50 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
61.77 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
63.66 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single.bed.gz
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single.bedgraph
4.89 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
2.50 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.21 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_skipped.bam
3.17 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
25.10 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam
132.60 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju.fastq.gz
83.19 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_fastqc.zip
487.86 kB
stderr.txt
1.71 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.fastq.gz
85.09 MB
fastqc
Directory
report.txt
724 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
477.68 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_fastqc.zip
489.18 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped.fastq.gz
25.10 MB
K-mers
other_exon region.png
258.88 kB
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_utr3.tsv
5.26 kB
positional_distribution_intron.tsv
192.24 kB
positional_distribution_genome.tsv
533.36 kB
kmer_frequency_intron.tsv
5.56 kB
positional_distribution_utr3.tsv
246.84 kB
positional_distribution_ncRNA.tsv
476.92 kB
ncRNA region.png
282.52 kB
intron region.png
224.21 kB
genome region.png
319.33 kB
kmer_frequency_other_exon.tsv
5.85 kB
positional_distribution_other_exon.tsv
363.53 kB
utr3 region.png
249.07 kB
kmer_frequency_genome.tsv
5.82 kB

m6A_CD8 T cells_-XL_polyA_20190312_JU

Paraclu
peaks.bed.gz
593.63 kB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped.fastq.gz
586.36 MB
stderr.txt
1.71 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
419.47 kB
STAR
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped.bam.bai
3.79 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped.bam
789.68 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.82 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
85.86 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
3.87 MB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
124.67 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bed.gz
66.48 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_reads_single.bed.gz
69.24 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bedgraph
222 B
FASTQ file (single-end)
fastqc
Directory
m6a-cd8-t-cells-xl-polya-20190312-ju.fastq.gz
594.73 MB
stderr.txt
1.30 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_fastqc.zip
427.82 kB
Cutadapt (single-end)
fastqc
Directory
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_fastqc.zip
426.94 kB
report.txt
704 B
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.fastq.gz
589.69 MB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_skipped.bam
4.00 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
15.68 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
77.11 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
17.13 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
23.22 MB
iCount summary
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.04 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
480 B
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.94 MB
K-mers
other_exon region.png
139.00 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_ncRNA.tsv
555.17 kB
intron region.png
269.50 kB
positional_distribution_intron.tsv
532.12 kB
kmer_frequency_genome.tsv
5.81 kB
utr3 region.png
210.18 kB
ncRNA region.png
268.07 kB
kmer_frequency_ncRNA.tsv
5.85 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_utr3.tsv
566.90 kB
positional_distribution_other_exon.tsv
573.60 kB
kmer_frequency_utr3.tsv
5.90 kB
genome region.png
147.59 kB
positional_distribution_genome.tsv
562.07 kB
STAR
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
586.36 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bw
106.44 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam
851.66 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_stats.txt
1.78 kB
iCount RNA-maps
results.tar.gz
3.10 MB

m6A_CD8 T cells_CCR7pos_ROneg_totalRNA_Donor1_20190312_JU

Cutadapt (single-end)
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
141.20 MB
report.txt
724 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
471.86 kB
iCount RNA-maps
results.tar.gz
803.87 kB
PEKA
5mer analysis of m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.tar.gz
942.04 kB
K-mers
positional_distribution_intron.tsv
241.59 kB
intron region.png
224.28 kB
ncRNA region.png
291.28 kB
kmer_frequency_genome.tsv
5.85 kB
other_exon region.png
258.64 kB
kmer_frequency_intron.tsv
5.77 kB
kmer_frequency_utr3.tsv
5.71 kB
positional_distribution_ncRNA.tsv
508.80 kB
positional_distribution_utr3.tsv
333.28 kB
kmer_frequency_ncRNA.tsv
5.82 kB
kmer_frequency_other_exon.tsv
5.88 kB
positional_distribution_genome.tsv
548.56 kB
genome region.png
323.32 kB
positional_distribution_other_exon.tsv
438.28 kB
utr3 region.png
269.82 kB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
14.06 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam
90.31 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam.bai
3.74 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bw
31.72 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_SJ.out.tab
431.43 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
68.81 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
104.79 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
71.42 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju.fastq.gz
137.75 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_fastqc.zip
476.65 kB
stderr.txt
1.71 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_skipped.bam
3.09 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.72 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bed.gz
1.58 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bedgraph
6.95 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
3.48 MB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
40.71 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam
218.70 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.fastq.gz
40.71 MB
stderr.txt
2.12 kB
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_fastqc.zip
479.36 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
473 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.31 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB
Paraclu
peaks.bed.gz
13.83 kB

m6A_CD8 T cells_CCR7neg_ROneg_totalRNA_Donor1_20190312_JU

iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
472 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.02 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju.fastq.gz
104.21 MB
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_fastqc.zip
467.24 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam
80.52 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_SJ.out.tab
334.19 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
16.45 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam.bai
3.79 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bw
27.91 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
96.61 MB
report.txt
725 B
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
460.56 kB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_fastqc.zip
480.16 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.fastq.gz
35.45 MB
stderr.txt
2.12 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
70.23 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
73.01 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
133.11 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bed.gz
1.03 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bedgraph
4.45 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.71 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.13 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_skipped.bam
3.11 kB
iCount RNA-maps
results.tar.gz
698.61 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam
156.24 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
35.45 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
K-mers
kmer_frequency_utr3.tsv
5.34 kB
kmer_frequency_intron.tsv
5.20 kB
positional_distribution_genome.tsv
522.58 kB
positional_distribution_ncRNA.tsv
458.14 kB
intron region.png
228.00 kB
positional_distribution_intron.tsv
157.07 kB
kmer_frequency_ncRNA.tsv
5.89 kB
kmer_frequency_genome.tsv
5.81 kB
other_exon region.png
230.37 kB
ncRNA region.png
292.53 kB
positional_distribution_utr3.tsv
230.36 kB
utr3 region.png
260.07 kB
kmer_frequency_other_exon.tsv
5.79 kB
positional_distribution_other_exon.tsv
313.34 kB
genome region.png
318.94 kB
Paraclu
peaks.bed.gz
8.09 kB

m6A_CD8 T cells_CCR7neg_ROneg_totalRNA_Donor2_20190312_JU

PEKA
5mer analysis of m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.tar.gz
857.47 kB
Cutadapt (single-end)
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.fastq.gz
110.12 MB
report.txt
725 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
469.46 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju.fastq.gz
119.50 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_fastqc.zip
471.13 kB
stderr.txt
1.71 kB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.fastq.gz
45.81 MB
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_fastqc.zip
491.54 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
70.75 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
134.77 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
72.84 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.bam.bai
3.76 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.bam
94.85 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
28.09 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_SJ.out.tab
372.94 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.bw
28.48 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.83 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_skipped.bam
3.17 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single.bed.gz
1.13 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single.bedgraph
4.91 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.22 MB
iCount RNA-maps
results.tar.gz
738.98 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam
176.13 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
45.81 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.16 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
471 B
Paraclu
peaks.bed.gz
9.80 kB
K-mers
intron region.png
225.40 kB
kmer_frequency_utr3.tsv
5.26 kB
kmer_frequency_genome.tsv
5.81 kB
positional_distribution_genome.tsv
534.74 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_intron.tsv
193.54 kB
positional_distribution_utr3.tsv
246.84 kB
utr3 region.png
249.07 kB
kmer_frequency_intron.tsv
5.61 kB
ncRNA region.png
282.70 kB
positional_distribution_other_exon.tsv
363.53 kB
genome region.png
318.27 kB
positional_distribution_ncRNA.tsv
476.38 kB
kmer_frequency_other_exon.tsv
5.85 kB
other_exon region.png
258.64 kB

m6A_CD8 T cells_CCR7pos_ROpos_totalRNA_Donor2_20190312_JU

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju.fastq.gz
100.63 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_fastqc.zip
472.44 kB
Paraclu
peaks.bed.gz
7.92 kB
iCount RNA-maps
results.tar.gz
705.57 kB
PEKA
5mer analysis of m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.tar.gz
866.83 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.bam
77.44 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.bam.bai
3.76 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
19.55 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_SJ.out.tab
322.03 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.bw
27.88 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
725 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
474.60 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.fastq.gz
95.66 MB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.fastq.gz
36.26 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_fastqc.zip
484.16 kB
stderr.txt
2.12 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
67.73 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
121.75 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
70.02 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single.bed.gz
1.17 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single.bedgraph
5.09 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.83 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.26 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_skipped.bam
3.33 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam
151.54 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
36.26 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
472 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.14 MB
K-mers
other_exon region.png
299.99 kB
kmer_frequency_intron.tsv
5.26 kB
positional_distribution_ncRNA.tsv
454.71 kB
positional_distribution_intron.tsv
179.86 kB
utr3 region.png
291.58 kB
kmer_frequency_utr3.tsv
5.48 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_other_exon.tsv
350.28 kB
intron region.png
232.85 kB
ncRNA region.png
307.63 kB
positional_distribution_genome.tsv
521.68 kB
positional_distribution_utr3.tsv
232.00 kB
kmer_frequency_genome.tsv
5.81 kB
kmer_frequency_other_exon.tsv
5.85 kB
genome region.png
306.52 kB

m6A_CD8 T cells_CCR7pos_ROneg_totalRNA_Donor1_20190312_JU

iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
80.14 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
152.95 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
83.19 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju.fastq.gz
177.84 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_fastqc.zip
452.64 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_fastqc.zip
489.11 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.fastq.gz
58.25 MB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam
129.49 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
29.72 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bw
33.76 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam.bai
4.10 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_SJ.out.tab
455.12 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
165.48 MB
fastqc
Directory
report.txt
725 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
461.09 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_skipped.bam
3.09 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
4.04 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.73 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bedgraph
6.97 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bed.gz
1.58 MB
iCount RNA-maps
results.tar.gz
806.29 kB
Paraclu
peaks.bed.gz
13.95 kB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
58.25 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam
268.51 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
476 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.31 MB
K-mers
other_exon region.png
258.81 kB
positional_distribution_intron.tsv
245.35 kB
intron region.png
233.12 kB
kmer_frequency_ncRNA.tsv
5.82 kB
utr3 region.png
269.88 kB
ncRNA region.png
291.05 kB
kmer_frequency_intron.tsv
5.77 kB
kmer_frequency_genome.tsv
5.84 kB
kmer_frequency_utr3.tsv
5.71 kB
kmer_frequency_other_exon.tsv
5.88 kB
positional_distribution_utr3.tsv
333.28 kB
positional_distribution_other_exon.tsv
436.87 kB
positional_distribution_ncRNA.tsv
508.80 kB
positional_distribution_genome.tsv
548.65 kB
genome region.png
313.47 kB

No Sample

STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam
56.40 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam.bai
3.33 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_SJ.out.tab
312.92 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
8.46 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bw
26.37 kB
K-mers
positional_distribution_intron.tsv
192.24 kB
positional_distribution_genome.tsv
533.36 kB
kmer_frequency_intron.tsv
5.56 kB
other_exon region.png
258.88 kB
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_utr3.tsv
5.26 kB
positional_distribution_utr3.tsv
246.84 kB
positional_distribution_ncRNA.tsv
476.92 kB
ncRNA region.png
282.52 kB
intron region.png
224.21 kB
genome region.png
319.33 kB
kmer_frequency_other_exon.tsv
5.85 kB
positional_distribution_other_exon.tsv
363.53 kB
utr3 region.png
249.07 kB
kmer_frequency_genome.tsv
5.82 kB
Paraclu
peaks.bed.gz
8.66 kB
iCount RNA-maps
results.tar.gz
803.87 kB
PEKA
5mer analysis of m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.tar.gz
815.82 kB
PEKA
5mer analysis of m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.tar.gz
832.14 kB
PEKA
5mer analysis of m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.tar.gz
866.83 kB
PEKA
5mer analysis of m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.tar.gz
857.47 kB
PEKA
5mer analysis of m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.tar.gz
942.04 kB
Paraclu
peaks.bed.gz
5.89 kB
iCount RNA-maps
results.tar.gz
658.18 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_fastqc.zip
494.71 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.fastq.gz
25.92 MB
Paraclu
peaks.bed.gz
7.91 kB
Paraclu
peaks.bed.gz
593.63 kB
Paraclu
peaks.bed.gz
497 B
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
472 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.02 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.fastq.gz
35.22 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_fastqc.zip
493.35 kB
Paraclu
peaks.bed.gz
7.92 kB
iCount RNA-maps
results.tar.gz
705.57 kB
Cutadapt (single-end)
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.fastq.gz
110.12 MB
report.txt
725 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
469.46 kB
K-mers
positional_distribution_intron.tsv
172.07 kB
intron region.png
168.53 kB
other_exon region.png
277.80 kB
kmer_frequency_ncRNA.tsv
5.86 kB
ncRNA region.png
311.81 kB
kmer_frequency_intron.tsv
5.18 kB
kmer_frequency_genome.tsv
5.83 kB
utr3 region.png
231.66 kB
positional_distribution_ncRNA.tsv
436.18 kB
positional_distribution_utr3.tsv
178.22 kB
kmer_frequency_utr3.tsv
4.71 kB
genome region.png
337.47 kB
positional_distribution_genome.tsv
502.46 kB
positional_distribution_other_exon.tsv
278.33 kB
kmer_frequency_other_exon.tsv
5.71 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
8.22 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam.bai
3.24 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_SJ.out.tab
275.23 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam
49.31 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bw
25.32 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
55.95 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
80.26 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
58.18 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bed.gz
970.95 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
2.03 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bedgraph
4.08 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.04 MB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
22.90 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam
115.53 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju.fastq.gz
74.21 MB
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_fastqc.zip
494.61 kB
Cutadapt (single-end)
report.txt
724 B
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
75.82 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
478.60 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.fastq.gz
22.90 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_fastqc.zip
492.86 kB
stderr.txt
2.12 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
467 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.08 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB
K-mers
intron region.png
199.82 kB
other_exon region.png
230.37 kB
kmer_frequency_utr3.tsv
5.34 kB
positional_distribution_utr3.tsv
230.36 kB
kmer_frequency_genome.tsv
5.82 kB
positional_distribution_genome.tsv
521.94 kB
genome region.png
318.03 kB
positional_distribution_intron.tsv
163.98 kB
kmer_frequency_ncRNA.tsv
5.89 kB
kmer_frequency_intron.tsv
5.11 kB
utr3 region.png
260.07 kB
positional_distribution_other_exon.tsv
313.34 kB
kmer_frequency_other_exon.tsv
5.79 kB
ncRNA region.png
301.71 kB
positional_distribution_ncRNA.tsv
457.71 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
83.33 MB
fastqc
Directory
report.txt
724 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
472.79 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
59.75 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
91.87 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
62.05 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_skipped.bam
3.11 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bed.gz
1.02 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bedgraph
4.42 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
2.24 MB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
25.92 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam
129.05 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju.fastq.gz
81.46 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_fastqc.zip
480.60 kB
iCount RNA-maps
results.tar.gz
696.69 kB
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.02 kB
Paraclu
peaks.bed.gz
7.94 kB
K-mers
positional_distribution_intron.tsv
241.59 kB
intron region.png
224.28 kB
ncRNA region.png
291.28 kB
kmer_frequency_genome.tsv
5.85 kB
other_exon region.png
258.64 kB
kmer_frequency_intron.tsv
5.77 kB
kmer_frequency_utr3.tsv
5.71 kB
positional_distribution_ncRNA.tsv
508.80 kB
positional_distribution_utr3.tsv
333.28 kB
kmer_frequency_ncRNA.tsv
5.82 kB
kmer_frequency_other_exon.tsv
5.88 kB
positional_distribution_genome.tsv
548.56 kB
genome region.png
323.32 kB
positional_distribution_other_exon.tsv
438.28 kB
utr3 region.png
269.82 kB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
14.06 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam
90.31 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam.bai
3.74 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bw
31.72 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_SJ.out.tab
431.43 kB
Cutadapt (single-end)
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
141.20 MB
report.txt
724 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
471.86 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
68.81 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
104.79 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
71.42 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju.fastq.gz
137.75 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_fastqc.zip
476.65 kB
stderr.txt
1.71 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_skipped.bam
3.09 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.72 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bed.gz
1.58 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bedgraph
6.95 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
3.48 MB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
40.71 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam
218.70 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.fastq.gz
40.71 MB
stderr.txt
2.12 kB
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_fastqc.zip
479.36 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
473 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.31 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB
K-mers
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_intron.tsv
200.24 kB
ncRNA region.png
253.25 kB
kmer_frequency_utr3.tsv
5.44 kB
other_exon region.png
262.71 kB
kmer_frequency_intron.tsv
5.47 kB
positional_distribution_genome.tsv
529.80 kB
intron region.png
182.01 kB
positional_distribution_ncRNA.tsv
473.48 kB
positional_distribution_other_exon.tsv
326.82 kB
kmer_frequency_genome.tsv
5.81 kB
kmer_frequency_other_exon.tsv
5.83 kB
positional_distribution_utr3.tsv
248.04 kB
utr3 region.png
261.27 kB
genome region.png
326.19 kB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
9.24 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam
54.72 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam.bai
3.19 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_SJ.out.tab
291.65 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bw
26.12 kB
iCount summary
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.09 MB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
63.01 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
60.67 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
94.06 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bed.gz
878.27 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_skipped.bam
3.51 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
1.98 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bedgraph
3.69 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
957.59 kB
iCount RNA-maps
results.tar.gz
734.96 kB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
24.08 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam
136.46 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju.fastq.gz
85.98 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_fastqc.zip
496.09 kB
stderr.txt
1.71 kB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_fastqc.zip
493.31 kB
stderr.txt
2.23 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.fastq.gz
24.08 MB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
7.58 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped.bw
26.99 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped.bam.bai
3.48 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped.bam
52.56 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_SJ.out.tab
311.63 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
471 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.14 MB
Paraclu
peaks.bed.gz
7.85 kB
iCount RNA-maps
results.tar.gz
706.88 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped.fastq.gz
23.34 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_fastqc.zip
485.89 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
59.99 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
88.15 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
61.95 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_fastqc.zip
479.36 kB
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju.fastq.gz
77.69 MB
stderr.txt
1.71 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_skipped.bam
3.32 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.26 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single.bed.gz
1.16 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_single.bedgraph
5.07 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
2.53 MB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.49 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
23.34 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam
122.17 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
Cutadapt (single-end)
report.txt
724 B
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.fastq.gz
79.55 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
481.16 kB
K-mers
kmer_frequency_intron.tsv
5.24 kB
positional_distribution_ncRNA.tsv
453.31 kB
other_exon region.png
297.26 kB
positional_distribution_utr3.tsv
232.00 kB
positional_distribution_intron.tsv
168.40 kB
kmer_frequency_utr3.tsv
5.48 kB
kmer_frequency_ncRNA.tsv
5.88 kB
genome region.png
330.41 kB
ncRNA region.png
307.75 kB
positional_distribution_genome.tsv
521.41 kB
utr3 region.png
285.10 kB
positional_distribution_other_exon.tsv
348.75 kB
kmer_frequency_other_exon.tsv
5.85 kB
intron region.png
227.37 kB
kmer_frequency_genome.tsv
5.83 kB
Paraclu
peaks.bed.gz
9.74 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
8.52 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped.bam.bai
3.45 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped.bam
56.93 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped.bw
27.25 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_SJ.out.tab
359.78 kB
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.16 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
95.50 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
61.77 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
63.66 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single.bed.gz
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_single.bedgraph
4.89 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
2.50 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.21 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_skipped.bam
3.17 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
25.10 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam
132.60 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju.fastq.gz
83.19 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_fastqc.zip
487.86 kB
stderr.txt
1.71 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.fastq.gz
85.09 MB
fastqc
Directory
report.txt
724 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
477.68 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped_fastqc.zip
489.18 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-5_unmapped.fastq.gz
25.10 MB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped.fastq.gz
586.36 MB
stderr.txt
1.71 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
419.47 kB
STAR
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped.bam.bai
3.79 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped.bam
789.68 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.82 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
85.86 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
3.87 MB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
124.67 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bed.gz
66.48 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_reads_single.bed.gz
69.24 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bedgraph
222 B
FASTQ file (single-end)
fastqc
Directory
m6a-cd8-t-cells-xl-polya-20190312-ju.fastq.gz
594.73 MB
stderr.txt
1.30 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_fastqc.zip
427.82 kB
Cutadapt (single-end)
fastqc
Directory
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_fastqc.zip
426.94 kB
report.txt
704 B
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.fastq.gz
589.69 MB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_skipped.bam
4.00 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
15.68 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
77.11 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
17.13 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
23.22 MB
iCount summary
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.04 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
480 B
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.94 MB
K-mers
other_exon region.png
139.00 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_ncRNA.tsv
555.17 kB
intron region.png
269.50 kB
positional_distribution_intron.tsv
532.12 kB
kmer_frequency_genome.tsv
5.81 kB
utr3 region.png
210.18 kB
ncRNA region.png
268.07 kB
kmer_frequency_ncRNA.tsv
5.85 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_utr3.tsv
566.90 kB
positional_distribution_other_exon.tsv
573.60 kB
kmer_frequency_utr3.tsv
5.90 kB
genome region.png
147.59 kB
positional_distribution_genome.tsv
562.07 kB
STAR
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
586.36 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bw
106.44 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam
851.66 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_stats.txt
1.78 kB
STAR
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
9.00 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped.bam.bai
2.19 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.79 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped.bam
20.91 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
88.52 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped.bw
17.56 kB
FASTQ file (single-end)
stderr.txt
1.32 kB
fastqc
Directory
m6a-cd8-t-cells-igg-polya-20190312-ju_fastqc.zip
572.46 kB
m6a-cd8-t-cells-igg-polya-20190312-ju.fastq.gz
12.71 MB
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_reads_single.bed.gz
11.69 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bed.gz
11.32 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
16.99 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bedgraph
222 B
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
iCount reads proxy
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped.fastq.gz
11.00 MB
stderr.txt
1.73 kB
fastqc
Directory
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
585.24 kB
Cutadapt (single-end)
report.txt
704 B
fastqc
Directory
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.fastq.gz
11.61 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_fastqc.zip
579.20 kB
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
129.86 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
139.28 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
507.93 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
420.81 kB
iCount summary
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
451 B
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
881 B
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
535.64 kB
iCount RNA-maps
results.tar.gz
466.16 kB
STAR
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
11.00 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam.bai
20.35 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam
18.22 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bw
104.96 kB
K-mers
kmer_frequency_genome.tsv
4.88 kB
positional_distribution_intron.tsv
94.74 kB
genome region.png
198.47 kB
kmer_frequency_intron.tsv
1.61 kB
positional_distribution_genome.tsv
155.00 kB
intron region.png
156.50 kB
kmer_frequency_utr3.tsv
1.16 kB
kmer_frequency_other_exon.tsv
3.01 kB
utr3 region.png
137.32 kB
positional_distribution_other_exon.tsv
118.11 kB
other_exon region.png
180.05 kB
positional_distribution_utr3.tsv
66.20 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam.bai
3.60 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
13.65 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam
63.20 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_SJ.out.tab
291.76 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bw
26.65 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
63.93 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
112.07 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
66.39 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.36 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bed.gz
975.74 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bedgraph
4.10 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.04 MB
Cutadapt (single-end)
report.txt
725 B
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
84.39 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
484.53 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju.fastq.gz
93.85 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_fastqc.zip
497.43 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.fastq.gz
28.99 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_fastqc.zip
501.43 kB
iCount RNA-maps
results.tar.gz
658.09 kB
Paraclu
peaks.bed.gz
5.91 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
468 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.08 MB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam
133.64 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
28.99 MB
K-mers
kmer_frequency_intron.tsv
5.18 kB
other_exon region.png
278.17 kB
positional_distribution_ncRNA.tsv
436.18 kB
kmer_frequency_ncRNA.tsv
5.86 kB
positional_distribution_intron.tsv
172.07 kB
intron region.png
168.47 kB
ncRNA region.png
311.55 kB
positional_distribution_utr3.tsv
178.22 kB
kmer_frequency_genome.tsv
5.82 kB
utr3 region.png
231.66 kB
kmer_frequency_utr3.tsv
4.71 kB
genome region.png
338.12 kB
kmer_frequency_other_exon.tsv
5.71 kB
positional_distribution_other_exon.tsv
278.33 kB
positional_distribution_genome.tsv
502.22 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju.fastq.gz
104.21 MB
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_fastqc.zip
467.24 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam
80.52 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_SJ.out.tab
334.19 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
16.45 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam.bai
3.79 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bw
27.91 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
96.61 MB
report.txt
725 B
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
460.56 kB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_fastqc.zip
480.16 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.fastq.gz
35.45 MB
stderr.txt
2.12 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
70.23 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
73.01 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
133.11 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bed.gz
1.03 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bedgraph
4.45 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.71 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.13 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_skipped.bam
3.11 kB
iCount RNA-maps
results.tar.gz
698.61 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam
156.24 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
35.45 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
K-mers
kmer_frequency_utr3.tsv
5.34 kB
kmer_frequency_intron.tsv
5.20 kB
positional_distribution_genome.tsv
522.58 kB
positional_distribution_ncRNA.tsv
458.14 kB
intron region.png
228.00 kB
positional_distribution_intron.tsv
157.07 kB
kmer_frequency_ncRNA.tsv
5.89 kB
kmer_frequency_genome.tsv
5.81 kB
other_exon region.png
230.37 kB
ncRNA region.png
292.53 kB
positional_distribution_utr3.tsv
230.36 kB
utr3 region.png
260.07 kB
kmer_frequency_other_exon.tsv
5.79 kB
positional_distribution_other_exon.tsv
313.34 kB
genome region.png
318.94 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
80.14 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
152.95 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
83.19 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju.fastq.gz
177.84 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_fastqc.zip
452.64 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_fastqc.zip
489.11 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.fastq.gz
58.25 MB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam
129.49 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
29.72 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bw
33.76 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam.bai
4.10 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_SJ.out.tab
455.12 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
165.48 MB
fastqc
Directory
report.txt
725 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
461.09 kB
K-mers
positional_distribution_intron.tsv
193.54 kB
intron region.png
225.40 kB
kmer_frequency_utr3.tsv
5.26 kB
kmer_frequency_genome.tsv
5.81 kB
positional_distribution_genome.tsv
534.74 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_utr3.tsv
246.84 kB
utr3 region.png
249.07 kB
kmer_frequency_intron.tsv
5.61 kB
ncRNA region.png
282.70 kB
positional_distribution_other_exon.tsv
363.53 kB
genome region.png
318.27 kB
positional_distribution_ncRNA.tsv
476.38 kB
kmer_frequency_other_exon.tsv
5.85 kB
other_exon region.png
258.64 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_skipped.bam
3.09 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
4.04 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.73 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bedgraph
6.97 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bed.gz
1.58 MB
iCount RNA-maps
results.tar.gz
806.29 kB
Paraclu
peaks.bed.gz
13.95 kB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
58.25 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam
268.51 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
476 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.31 MB
K-mers
other_exon region.png
258.81 kB
positional_distribution_intron.tsv
245.35 kB
intron region.png
233.12 kB
kmer_frequency_ncRNA.tsv
5.82 kB
utr3 region.png
269.88 kB
ncRNA region.png
291.05 kB
kmer_frequency_intron.tsv
5.77 kB
kmer_frequency_genome.tsv
5.84 kB
kmer_frequency_utr3.tsv
5.71 kB
kmer_frequency_other_exon.tsv
5.88 kB
positional_distribution_utr3.tsv
333.28 kB
positional_distribution_other_exon.tsv
436.87 kB
positional_distribution_ncRNA.tsv
508.80 kB
positional_distribution_genome.tsv
548.65 kB
genome region.png
313.47 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju.fastq.gz
120.67 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_fastqc.zip
479.47 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
103.33 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
472.85 kB
report.txt
724 B
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
16.03 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam.bai
3.78 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam
93.53 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bw
28.50 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_SJ.out.tab
316.86 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
72.25 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
130.69 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
69.88 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bed.gz
895.23 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
974.63 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_skipped.bam
3.51 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bedgraph
3.75 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.60 MB
iCount summary
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
469 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.11 MB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
35.22 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam
170.41 MB
iCount RNA-maps
results.tar.gz
677.63 kB
K-mers
other_exon region.png
250.00 kB
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_intron.tsv
5.57 kB
positional_distribution_intron.tsv
222.85 kB
kmer_frequency_utr3.tsv
5.49 kB
positional_distribution_ncRNA.tsv
473.44 kB
positional_distribution_genome.tsv
532.25 kB
ncRNA region.png
253.07 kB
positional_distribution_utr3.tsv
250.34 kB
kmer_frequency_other_exon.tsv
5.84 kB
utr3 region.png
261.50 kB
genome region.png
264.74 kB
positional_distribution_other_exon.tsv
328.08 kB
intron region.png
184.51 kB
kmer_frequency_genome.tsv
5.80 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju.fastq.gz
100.63 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_fastqc.zip
472.44 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.bam
77.44 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.bam.bai
3.76 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
19.55 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_SJ.out.tab
322.03 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.bw
27.88 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
725 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
474.60 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.fastq.gz
95.66 MB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped.fastq.gz
36.26 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_fastqc.zip
484.16 kB
stderr.txt
2.12 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
67.73 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
121.75 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
70.02 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single.bed.gz
1.17 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single.bedgraph
5.09 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.83 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.26 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_skipped.bam
3.33 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam
151.54 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
36.26 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
472 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.14 MB
K-mers
other_exon region.png
299.99 kB
kmer_frequency_intron.tsv
5.26 kB
positional_distribution_ncRNA.tsv
454.71 kB
positional_distribution_intron.tsv
179.86 kB
utr3 region.png
291.58 kB
kmer_frequency_utr3.tsv
5.48 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_other_exon.tsv
350.28 kB
intron region.png
232.85 kB
ncRNA region.png
307.63 kB
positional_distribution_genome.tsv
521.68 kB
positional_distribution_utr3.tsv
232.00 kB
kmer_frequency_genome.tsv
5.81 kB
kmer_frequency_other_exon.tsv
5.85 kB
genome region.png
306.52 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju.fastq.gz
119.50 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_fastqc.zip
471.13 kB
stderr.txt
1.71 kB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.fastq.gz
45.81 MB
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_fastqc.zip
491.54 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
70.75 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
134.77 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
72.84 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.bam.bai
3.76 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.bam
94.85 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
28.09 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_SJ.out.tab
372.94 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped.bw
28.48 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.83 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_skipped.bam
3.17 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single.bed.gz
1.13 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single.bedgraph
4.91 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.22 MB
iCount RNA-maps
results.tar.gz
738.98 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam
176.13 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
45.81 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.16 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
471 B
Paraclu
peaks.bed.gz
9.80 kB
Paraclu
peaks.bed.gz
8.09 kB
iCount RNA-maps
results.tar.gz
3.10 MB
iCount RNA-maps
results.tar.gz
677.79 kB
Cutadapt (single-end)
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
87.95 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
487.94 kB
report.txt
724 B
Paraclu
peaks.bed.gz
13.83 kB

m6A_CD8 T cells_CCR7neg_ROneg_totalRNA_Donor1_20190312_JU

PEKA
5mer analysis of m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.tar.gz
832.14 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_fastqc.zip
494.71 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.fastq.gz
25.92 MB
K-mers
intron region.png
199.82 kB
other_exon region.png
230.37 kB
kmer_frequency_utr3.tsv
5.34 kB
positional_distribution_utr3.tsv
230.36 kB
kmer_frequency_genome.tsv
5.82 kB
positional_distribution_genome.tsv
521.94 kB
genome region.png
318.03 kB
positional_distribution_intron.tsv
163.98 kB
kmer_frequency_ncRNA.tsv
5.89 kB
kmer_frequency_intron.tsv
5.11 kB
utr3 region.png
260.07 kB
positional_distribution_other_exon.tsv
313.34 kB
kmer_frequency_other_exon.tsv
5.79 kB
ncRNA region.png
301.71 kB
positional_distribution_ncRNA.tsv
457.71 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam.bai
3.33 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_SJ.out.tab
312.92 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
8.46 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bw
26.37 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam
56.40 MB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
83.33 MB
fastqc
Directory
report.txt
724 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
472.79 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
59.75 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
91.87 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
62.05 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_skipped.bam
3.11 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bed.gz
1.02 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bedgraph
4.42 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
2.24 MB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
25.92 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam
129.05 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju.fastq.gz
81.46 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_fastqc.zip
480.60 kB
iCount RNA-maps
results.tar.gz
696.69 kB
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.02 kB
Paraclu
peaks.bed.gz
7.94 kB

m6A_CD8 T cells_CCR7neg_ROpos_totalRNA_Donor1_20190312_JU

K-mers
positional_distribution_ncRNA.tsv
473.48 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_intron.tsv
200.24 kB
ncRNA region.png
253.25 kB
kmer_frequency_utr3.tsv
5.44 kB
other_exon region.png
262.71 kB
kmer_frequency_intron.tsv
5.47 kB
positional_distribution_genome.tsv
529.80 kB
intron region.png
182.01 kB
positional_distribution_other_exon.tsv
326.82 kB
kmer_frequency_genome.tsv
5.81 kB
kmer_frequency_other_exon.tsv
5.83 kB
positional_distribution_utr3.tsv
248.04 kB
utr3 region.png
261.27 kB
genome region.png
326.19 kB
Paraclu
peaks.bed.gz
7.91 kB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
9.24 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam
54.72 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bam.bai
3.19 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_SJ.out.tab
291.65 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.bw
26.12 kB
iCount summary
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.09 MB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
63.01 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
60.67 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
94.06 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bed.gz
878.27 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_skipped.bam
3.51 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
1.98 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_single.bedgraph
3.69 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
957.59 kB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
24.08 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam
136.46 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju.fastq.gz
85.98 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_fastqc.zip
496.09 kB
stderr.txt
1.71 kB
iCount reads proxy
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped_fastqc.zip
493.31 kB
stderr.txt
2.23 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-5_unmapped.fastq.gz
24.08 MB
iCount RNA-maps
results.tar.gz
677.79 kB
Cutadapt (single-end)
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
87.95 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
487.94 kB
report.txt
724 B

m6A_CD8 T cells_IgG_polyA_20190312_JU

Paraclu
peaks.bed.gz
497 B
STAR
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
9.00 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped.bam.bai
2.19 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.79 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped.bam
20.91 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
88.52 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped.bw
17.56 kB
FASTQ file (single-end)
stderr.txt
1.32 kB
fastqc
Directory
m6a-cd8-t-cells-igg-polya-20190312-ju_fastqc.zip
572.46 kB
m6a-cd8-t-cells-igg-polya-20190312-ju.fastq.gz
12.71 MB
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_reads_single.bed.gz
11.69 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bed.gz
11.32 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
16.99 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bedgraph
222 B
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
iCount reads proxy
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped.fastq.gz
11.00 MB
stderr.txt
1.73 kB
fastqc
Directory
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
585.24 kB
Cutadapt (single-end)
report.txt
704 B
fastqc
Directory
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.fastq.gz
11.61 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_fastqc.zip
579.20 kB
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
129.86 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
139.28 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
507.93 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
420.81 kB
iCount summary
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
451 B
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
881 B
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
535.64 kB
iCount RNA-maps
results.tar.gz
466.16 kB
STAR
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
11.00 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam.bai
20.35 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam
18.22 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bw
104.96 kB
K-mers
kmer_frequency_genome.tsv
4.88 kB
positional_distribution_intron.tsv
94.74 kB
genome region.png
198.47 kB
kmer_frequency_intron.tsv
1.61 kB
positional_distribution_genome.tsv
155.00 kB
intron region.png
156.50 kB
kmer_frequency_utr3.tsv
1.16 kB
kmer_frequency_other_exon.tsv
3.01 kB
utr3 region.png
137.32 kB
positional_distribution_other_exon.tsv
118.11 kB
other_exon region.png
180.05 kB
positional_distribution_utr3.tsv
66.20 kB

m6A_CD8 T cells_CCR7pos_ROpos_totalRNA_Donor1_20190312_JU

PEKA
5mer analysis of m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.tar.gz
815.82 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam.bai
3.60 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
13.65 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam
63.20 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_SJ.out.tab
291.76 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bw
26.65 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
63.93 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
112.07 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
66.39 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.36 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bed.gz
975.74 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bedgraph
4.10 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
1.04 MB
Cutadapt (single-end)
report.txt
725 B
fastqc
Directory
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
84.39 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
484.53 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju.fastq.gz
93.85 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_fastqc.zip
497.43 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.fastq.gz
28.99 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_fastqc.zip
501.43 kB
iCount RNA-maps
results.tar.gz
658.09 kB
Paraclu
peaks.bed.gz
5.91 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
468 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.08 MB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam
133.64 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
28.99 MB
K-mers
kmer_frequency_intron.tsv
5.18 kB
other_exon region.png
278.17 kB
positional_distribution_ncRNA.tsv
436.18 kB
kmer_frequency_ncRNA.tsv
5.86 kB
positional_distribution_intron.tsv
172.07 kB
intron region.png
168.47 kB
ncRNA region.png
311.55 kB
positional_distribution_utr3.tsv
178.22 kB
kmer_frequency_genome.tsv
5.82 kB
utr3 region.png
231.66 kB
kmer_frequency_utr3.tsv
4.71 kB
genome region.png
338.12 kB
kmer_frequency_other_exon.tsv
5.71 kB
positional_distribution_other_exon.tsv
278.33 kB
positional_distribution_genome.tsv
502.22 kB

m6A_CD8 T cells_CCR7neg_ROpos_totalRNA_Donor1_20190312_JU

Paraclu
peaks.bed.gz
8.66 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.12 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.fastq.gz
35.22 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_fastqc.zip
493.35 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.71 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju.fastq.gz
120.67 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_fastqc.zip
479.47 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
103.33 MB
fastqc
Directory
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
472.85 kB
report.txt
724 B
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
16.03 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam.bai
3.78 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bam
93.53 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped.bw
28.50 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_SJ.out.tab
316.86 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
72.25 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
130.69 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
69.88 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bed.gz
895.23 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
974.63 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_skipped.bam
3.51 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single.bedgraph
3.75 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
2.60 MB
iCount summary
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
469 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.11 MB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
35.22 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam
170.41 MB
iCount RNA-maps
results.tar.gz
677.63 kB
K-mers
other_exon region.png
250.00 kB
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_intron.tsv
5.57 kB
positional_distribution_intron.tsv
222.85 kB
kmer_frequency_utr3.tsv
5.49 kB
positional_distribution_ncRNA.tsv
473.44 kB
positional_distribution_genome.tsv
532.25 kB
ncRNA region.png
253.07 kB
positional_distribution_utr3.tsv
250.34 kB
kmer_frequency_other_exon.tsv
5.84 kB
utr3 region.png
261.50 kB
genome region.png
264.74 kB
positional_distribution_other_exon.tsv
328.08 kB
intron region.png
184.51 kB
kmer_frequency_genome.tsv
5.80 kB