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Folder iconiMaps genomes and annotations

Jure Zmrzlikar
Sept. 16, 2019
Genomes, annotations and other commonly used imaps objects

No Sample

FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.masked.fasta.gz
855.53 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.masked.dict
121.70 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.masked.fasta
2.73 GB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.masked.fasta.fai
32.15 kB
FASTA file
GRCh38.p12.genome.masked.dict
62.83 kB
GRCh38.p12.genome.masked.fasta.fai
19.95 kB
GRCh38.p12.genome.masked.fasta.gz
951.33 MB
GRCh38.p12.genome.masked.fasta
3.09 GB
FASTA file
GRCm38.p6.genome.masked.fasta
2.62 GB
GRCm38.p6.genome.masked.dict
14.58 kB
GRCm38.p6.genome.masked.fasta.fai
4.65 kB
GRCm38.p6.genome.masked.fasta.gz
837.76 MB
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
Annotation (GTF2.2)
Staphylococcus_aureus_subsp_aureus_mw2.ASM1126v1.39.gtf
3.88 MB
Annotation (GTF2.2)
Drosophila_melanogaster.BDGP6.92.gtf
142.69 MB
FASTA file
GRCm38.primary_assembly.genome.fasta
2.59 GB
GRCm38.primary_assembly.genome.fasta.gz
737.67 MB
GRCm38.primary_assembly.genome.fasta.fai
2.15 kB
iCount segment
results
Directory
chrom_lenghts.txt
1.07 kB
templates
Directory
GTF file
gencode.vM16.primary_assembly.annotation_sorted.gtf.idx
1.30 MB
gencode.vM16.primary_assembly.annotation_sorted.gtf
764.59 MB
gencode.vM16.primary_assembly.annotation.gtf
764.59 MB
tracks
Directory
trackList.json
481 B
names
Directory
seq
Directory
STAR genome index
star_index
Directory
Annotation (GTF2.2)
Danio_rerio.GRCz11.92.gtf
424.64 MB
Annotation (GTF2.2)
Saccharomyces_cerevisiae.R64-1-1.92.gtf
9.10 MB
Upload nucleotide sequence(s) (FASTA)
Danio_rerio.GRCz11.dna.primary_assembly.fasta.gz
391.23 MB
Danio_rerio.GRCz11.dna.primary_assembly.fasta.fai
32.66 kB
Upload nucleotide sequence(s) (FASTA)
Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fasta.gz
3.61 MB
Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fasta.fai
415 B
Upload nucleotide sequence(s) (FASTA)
Drosophila_melanogaster.BDGP6.dna.toplevel.fasta.gz
41.28 MB
Drosophila_melanogaster.BDGP6.dna.toplevel.fasta.fai
67.86 kB
iCount segment
results
Directory
chrom_lenghts.txt
181 B
templates
Directory
Upload nucleotide sequence(s) (FASTA)
Staphylococcus_aureus_subsp_aureus_mw2.ASM1126v1.dna.chromosome.Chromosome.fasta.gz
844.43 kB
Staphylococcus_aureus_subsp_aureus_mw2.ASM1126v1.dna.chromosome.Chromosome.fasta.fai
28 B
iCount segment
templates
Directory
chrom_lenghts.txt
19 B
results
Directory
Upload nucleotide sequence(s) (FASTA)
Escherichia_coli_bw25113.ASM75055v1.dna.chromosome.Chromosome.fasta.gz
1.37 MB
Escherichia_coli_bw25113.ASM75055v1.dna.chromosome.Chromosome.fasta.fai
28 B
Annotation (GTF2.2)
Escherichia_coli_bw25113.ASM75055v1.39.gtf
6.16 MB
Upload nucleotide sequence(s) (FASTA)
Rattus_norvegicus.final.smallRNA.fasta.fai
19.57 kB
Rattus_norvegicus.final.smallRNA.fasta.gz
8.88 kB
Upload nucleotide sequence(s) (FASTA)
E_coli.final.smallRNA.fasta.gz
3.23 kB
E_coli.final.smallRNA.fasta.fai
6.15 kB
Upload nucleotide sequence(s) (FASTA)
S_aureus.final.smallRNA.fasta.fai
4.04 kB
S_aureus.final.smallRNA.fasta.gz
2.76 kB
Upload nucleotide sequence(s) (FASTA)
Drosophila_melanogaster.final.smallRNA.fasta.gz
5.54 kB
Drosophila_melanogaster.final.smallRNA.fasta.fai
13.37 kB
Upload nucleotide sequence(s) (FASTA)
Danio_rerio.final.smallRNA.fasta.gz
134.40 kB
Danio_rerio.final.smallRNA.fasta.fai
489.67 kB
Upload nucleotide sequence(s) (FASTA)
Homo_sapiens.final.smallRNA.fasta.fai
16.65 kB
Homo_sapiens.final.smallRNA.fasta.gz
9.24 kB
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
FASTA file
GRCh38.primary_assembly.genome.fasta.fai
6.33 kB
GRCh38.primary_assembly.genome.fasta
2.93 GB
GRCh38.primary_assembly.genome.fasta.gz
841.11 MB
GTF file
gencode.v27.primary_assembly.annotation.gtf
1.07 GB
gencode.v27.primary_assembly.annotation_sorted.gtf
1.07 GB
tracks
Directory
gencode.v27.primary_assembly.annotation_sorted.gtf.idx
1.47 MB
trackList.json
414 B
STAR genome index
star_index
Directory
iCount segment
results
Directory
chrom_lenghts.txt
3.12 kB
templates
Directory
iCount segment
chrom_lenghts.txt
38.65 kB
templates
Directory
results
Directory
STAR genome index
star_index
Directory
iCount segment
results
Directory
chrom_lenghts.txt
16.20 kB
templates
Directory
Upload nucleotide sequence(s) (FASTA)
Mus_musculus.final.smallRNA.fasta.fai
18.18 kB
Mus_musculus.final.smallRNA.fasta.gz
15.76 kB
iCount segment
chrom_lenghts.txt
19 B
results
Directory
templates
Directory
Upload nucleotide sequence(s) (FASTA)
Saccharomyces_cerevisiae.final.smallRNA.fasta.fai
12.45 kB
Saccharomyces_cerevisiae.final.smallRNA.fasta.gz
4.94 kB
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
STAR genome index
star_index
Directory
GTF file
Rattus_norvegicus.Rnor_6.0.92_sorted.gtf.idx
1.33 MB
tracks
Directory
Rattus_norvegicus.Rnor_6.0.92_sorted.gtf
267.16 MB
trackList.json
481 B
Rattus_norvegicus.Rnor_6.0.92.gtf
267.16 MB
names
Directory
seq
Directory
FASTA file
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta.fai
32.15 kB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta.gz
793.08 MB
Rattus_norvegicus.Rnor_6.0.dna.toplevel.fasta
2.72 GB
iCount segment
chrom_lenghts.txt
16.31 kB
results
Directory
templates
Directory