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Folder iconMM RNAseq

Paulo Gameiro
Aug. 30, 2019
RNAseq MM cell lines after treatment with BCMA-CARTs

sample12

FASTQ file (paired-end)
stderr.txt
1.79 kB
fastqc
Directory
sample12_R1_001.fastq.gz
2.28 GB
sample12_R2_001.fastq.gz
2.39 GB
sample12_R1_001_fastqc.zip
791.33 kB
sample12_R2_001_fastqc.zip
803.23 kB
MultiQC
multiqc_report.html
1.22 MB
multiqc_data
Directory
Subsample FASTQ (paired-end)
fastqc
Directory
sample12_R1_001_preprocessed_downsampled.fastq.gz
57.76 MB
sample12_R2_001_preprocessed_downsampled.fastq.gz
57.35 MB
STAR
sample12_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
25.41 MB
sample12_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
25.34 MB
sample12_R1_001_preprocessed.bam.bai
3.61 MB
sample12_R1_001_preprocessed_SJ.out.tab
8.93 MB
sample12_R1_001_preprocessed_stats.txt
1.82 kB
sample12_R1_001_preprocessed.bam
3.64 GB
STAR
sample12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.90 MB
sample12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.48 MB
sample12_R1_001_preprocessed_downsampled.bam.bai
336 B
sample12_R1_001_preprocessed_downsampled.bam
2.55 MB
sample12_R1_001_preprocessed_downsampled_SJ.out.tab
257 B
sample12_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
STAR
sample12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.28 MB
sample12_R1_001_preprocessed_downsampled.bam.bai
1.05 kB
sample12_R1_001_preprocessed_downsampled.bam
418.80 kB
sample12_R1_001_preprocessed_downsampled_SJ.out.tab
7.93 kB
sample12_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
sample12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.86 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
351 B
sample12_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample12_R1_001_preprocessed_fpkm.tab.gz
411.17 kB
sample12_R1_001_preprocessed_rc.tab.gz
251.39 kB
sample12_R1_001_preprocessed_tpm.tab.gz
409.96 kB
sample12_R1_001_preprocessed_cpm.tab.gz
290.54 kB
sample12_R1_001_preprocessed_expressions.txt.gz
1.14 MB
Samtools idxstats
idxstat_report.txt
4.10 kB
BBDuk (paired-end)
fastqc
Directory
sample12_R1_001_preprocessed.fastq.gz
1.64 GB
sample12_R2_001_preprocessed.fastq.gz
1.63 GB
sample12_R1_001_statistics.txt.gz
1.19 kB

sample9

FASTQ file (paired-end)
sample9_R1_001.fastq.gz
2.26 GB
stderr.txt
1.75 kB
fastqc
Directory
sample9_R1_001_fastqc.zip
795.93 kB
sample9_R2_001.fastq.gz
2.36 GB
sample9_R2_001_fastqc.zip
799.72 kB
featureCounts
sample9_R1_001_preprocessed_tpm.tab.gz
427.61 kB
results
Directory
sample9_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample9_R1_001_preprocessed_expressions.txt.gz
1.18 MB
sample9_R1_001_preprocessed_rc.tab.gz
252.99 kB
featureCounts_rc.txt.summary
351 B
sample9_R1_001_preprocessed_fpkm.tab.gz
428.43 kB
sample9_R1_001_preprocessed_cpm.tab.gz
290.87 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
STAR
sample9_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
44.04 MB
sample9_R1_001_preprocessed.bam
3.64 GB
sample9_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
43.49 MB
sample9_R1_001_preprocessed.bam.bai
3.69 MB
sample9_R1_001_preprocessed_stats.txt
1.82 kB
sample9_R1_001_preprocessed_SJ.out.tab
8.64 MB
STAR
sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.33 MB
sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.79 MB
sample9_R1_001_preprocessed_downsampled.bam
3.36 MB
sample9_R1_001_preprocessed_downsampled.bam.bai
336 B
sample9_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample9_R1_001_preprocessed_downsampled_SJ.out.tab
252 B
STAR
sample9_R1_001_preprocessed_downsampled.bam.bai
832 B
sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.19 MB
sample9_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample9_R1_001_preprocessed_downsampled.bam
318.26 kB
sample9_R1_001_preprocessed_downsampled_SJ.out.tab
6.11 kB
sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.64 MB
Samtools idxstats
idxstat_report.txt
4.08 kB
Subsample FASTQ (paired-end)
fastqc
Directory
sample9_R2_001_preprocessed_downsampled.fastq.gz
57.68 MB
sample9_R1_001_preprocessed_downsampled.fastq.gz
58.13 MB
BBDuk (paired-end)
fastqc
Directory
sample9_R2_001_preprocessed.fastq.gz
1.61 GB
sample9_R1_001_preprocessed.fastq.gz
1.62 GB
sample9_R1_001_statistics.txt.gz
1.19 kB

Copy of U266 untreated

Samtools idxstats
idxstat_report.txt
4.09 kB
FASTQ file (paired-end)
sample1_R1_001.fastq.gz
2.28 GB
stderr.txt
1.75 kB
fastqc
Directory
sample1_R2_001.fastq.gz
2.42 GB
sample1_R2_001_fastqc.zip
806.18 kB
sample1_R1_001_fastqc.zip
797.67 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
featureCounts
sample1_R1_001_preprocessed_rc.tab.gz
252.30 kB
featureCounts_rc.txt.summary
350 B
results
Directory
sample1_R1_001_preprocessed_fpkm.tab.gz
418.55 kB
sample1_R1_001_preprocessed_tpm.tab.gz
417.65 kB
sample1_R1_001_preprocessed_cpm.tab.gz
290.16 kB
sample1_R1_001_preprocessed_expressions.txt.gz
1.16 MB
sample1_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
STAR
sample1_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.39 MB
sample1_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.73 MB
sample1_R1_001_preprocessed_downsampled.bam.bai
1.37 kB
sample1_R1_001_preprocessed_downsampled.bam
509.99 kB
sample1_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
sample1_R1_001_preprocessed_downsampled_SJ.out.tab
7.45 kB
STAR
sample1_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.50 MB
sample1_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.84 MB
sample1_R1_001_preprocessed_downsampled.bam
1.84 MB
sample1_R1_001_preprocessed_downsampled.bam.bai
336 B
sample1_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample1_R1_001_preprocessed_downsampled_SJ.out.tab
409 B
STAR
sample1_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
37.95 MB
sample1_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
38.03 MB
sample1_R1_001_preprocessed_stats.txt
1.82 kB
sample1_R1_001_preprocessed.bam
3.52 GB
sample1_R1_001_preprocessed.bam.bai
3.62 MB
sample1_R1_001_preprocessed_SJ.out.tab
9.66 MB
Subsample FASTQ (paired-end)
fastqc
Directory
sample1_R1_001_preprocessed_downsampled.fastq.gz
57.96 MB
sample1_R2_001_preprocessed_downsampled.fastq.gz
57.31 MB
BBDuk (paired-end)
fastqc
Directory
sample1_R1_001_preprocessed.fastq.gz
1.64 GB
sample1_R2_001_preprocessed.fastq.gz
1.62 GB
sample1_R1_001_statistics.txt.gz
1.11 kB

Copy of H929 + UT

MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
Samtools idxstats
idxstat_report.txt
4.11 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample5_R1_001_preprocessed_fpkm.tab.gz
418.89 kB
sample5_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample5_R1_001_preprocessed_rc.tab.gz
252.58 kB
sample5_R1_001_preprocessed_cpm.tab.gz
292.11 kB
sample5_R1_001_preprocessed_expressions.txt.gz
1.16 MB
results
Directory
sample5_R1_001_preprocessed_tpm.tab.gz
418.05 kB
STAR
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.62 MB
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.98 MB
sample5_R1_001_preprocessed_downsampled.bam
317.79 kB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
5.43 kB
sample5_R1_001_preprocessed_downsampled.bam.bai
1.13 kB
STAR
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.65 MB
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.02 MB
sample5_R1_001_preprocessed_downsampled.bam.bai
336 B
sample5_R1_001_preprocessed_downsampled.bam
1.82 MB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
259 B
Subsample FASTQ (paired-end)
fastqc
Directory
sample5_R2_001_preprocessed_downsampled.fastq.gz
58.12 MB
sample5_R1_001_preprocessed_downsampled.fastq.gz
58.48 MB
BBDuk (paired-end)
sample5_R1_001_preprocessed.fastq.gz
1.82 GB
sample5_R2_001_preprocessed.fastq.gz
1.81 GB
fastqc
Directory
sample5_R1_001_statistics.txt.gz
1.13 kB
FASTQ file (paired-end)
sample5_R2_001.fastq.gz
2.61 GB
fastqc
Directory
sample5_R1_001_fastqc.zip
790.41 kB
stderr.txt
1.75 kB
sample5_R2_001_fastqc.zip
795.40 kB
sample5_R1_001.fastq.gz
2.50 GB
STAR
sample5_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.00 MB
sample5_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
27.13 MB
sample5_R1_001_preprocessed.bam.bai
3.64 MB
sample5_R1_001_preprocessed_SJ.out.tab
8.98 MB
sample5_R1_001_preprocessed_stats.txt
1.82 kB
sample5_R1_001_preprocessed.bam
3.80 GB

Copy of U266 + UT

Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_report.html
1.22 MB
multiqc_data
Directory
FASTQ file (paired-end)
fastqc
Directory
sample2_R1_001.fastq.gz
2.37 GB
sample2_R2_001.fastq.gz
2.51 GB
stderr.txt
1.84 kB
sample2_R1_001_fastqc.zip
793.52 kB
sample2_R2_001_fastqc.zip
805.88 kB
STAR
sample2_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.61 MB
sample2_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.00 MB
sample2_R1_001_preprocessed_downsampled.bam
454.05 kB
sample2_R1_001_preprocessed_downsampled.bam.bai
1.29 kB
sample2_R1_001_preprocessed_downsampled_SJ.out.tab
6.89 kB
sample2_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
sample2_R1_001_preprocessed_downsampled.bam.bai
336 B
sample2_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample2_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.80 MB
sample2_R1_001_preprocessed_downsampled.bam
1.67 MB
sample2_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.19 MB
sample2_R1_001_preprocessed_downsampled_SJ.out.tab
51 B
Subsample FASTQ (paired-end)
fastqc
Directory
sample2_R1_001_preprocessed_downsampled.fastq.gz
58.17 MB
sample2_R2_001_preprocessed_downsampled.fastq.gz
57.57 MB
featureCounts
featureCounts_rc.txt.summary
350 B
sample2_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
results
Directory
sample2_R1_001_preprocessed_fpkm.tab.gz
418.55 kB
sample2_R1_001_preprocessed_tpm.tab.gz
417.56 kB
sample2_R1_001_preprocessed_rc.tab.gz
252.77 kB
sample2_R1_001_preprocessed_cpm.tab.gz
293.45 kB
sample2_R1_001_preprocessed_expressions.txt.gz
1.16 MB
STAR
sample2_R1_001_preprocessed.bam.bai
3.62 MB
sample2_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
36.54 MB
sample2_R1_001_preprocessed.bam
3.62 GB
sample2_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
36.70 MB
sample2_R1_001_preprocessed_stats.txt
1.82 kB
sample2_R1_001_preprocessed_SJ.out.tab
9.17 MB
BBDuk (paired-end)
fastqc
Directory
sample2_R1_001_preprocessed.fastq.gz
1.71 GB
sample2_R2_001_preprocessed.fastq.gz
1.69 GB
sample2_R1_001_statistics.txt.gz
1.08 kB

Copy of U266 + CART

Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
350 B
sample3_R1_001_preprocessed_fpkm.tab.gz
413.50 kB
sample3_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample3_R1_001_preprocessed_rc.tab.gz
252.48 kB
sample3_R1_001_preprocessed_cpm.tab.gz
290.65 kB
sample3_R1_001_preprocessed_expressions.txt.gz
1.15 MB
sample3_R1_001_preprocessed_tpm.tab.gz
412.61 kB
STAR
sample3_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.63 MB
sample3_R1_001_preprocessed_downsampled.bam
1.42 MB
sample3_R1_001_preprocessed_downsampled.bam.bai
336 B
sample3_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample3_R1_001_preprocessed_downsampled_SJ.out.tab
258 B
sample3_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.14 MB
STAR
sample3_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
34.71 MB
sample3_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
34.79 MB
sample3_R1_001_preprocessed.bam.bai
3.40 MB
sample3_R1_001_preprocessed.bam
3.34 GB
sample3_R1_001_preprocessed_SJ.out.tab
9.22 MB
sample3_R1_001_preprocessed_stats.txt
1.82 kB
Subsample FASTQ (paired-end)
sample3_R2_001_preprocessed_downsampled.fastq.gz
57.39 MB
sample3_R1_001_preprocessed_downsampled.fastq.gz
57.87 MB
fastqc
Directory
BBDuk (paired-end)
fastqc
Directory
sample3_R1_001_preprocessed.fastq.gz
1.58 GB
sample3_R2_001_preprocessed.fastq.gz
1.57 GB
sample3_R1_001_statistics.txt.gz
1.09 kB
FASTQ file (paired-end)
sample3_R1_001.fastq.gz
2.20 GB
fastqc
Directory
sample3_R2_001.fastq.gz
2.30 GB
sample3_R2_001_fastqc.zip
804.47 kB
sample3_R1_001_fastqc.zip
797.35 kB
stderr.txt
1.75 kB
STAR
sample3_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.31 MB
sample3_R1_001_preprocessed_downsampled.bam
469.71 kB
sample3_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.82 MB
sample3_R1_001_preprocessed_downsampled.bam.bai
1.29 kB
sample3_R1_001_preprocessed_downsampled_SJ.out.tab
7.52 kB
sample3_R1_001_preprocessed_downsampled_stats.txt
1.79 kB

No Sample

Samtools idxstats
idxstat_report.txt
4.09 kB
Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_report.html
1.22 MB
multiqc_data
Directory
FASTQ file (paired-end)
sample1_R1_001.fastq.gz
2.28 GB
stderr.txt
1.75 kB
fastqc
Directory
sample1_R2_001.fastq.gz
2.42 GB
sample1_R2_001_fastqc.zip
806.18 kB
sample1_R1_001_fastqc.zip
797.67 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
featureCounts
sample1_R1_001_preprocessed_rc.tab.gz
252.30 kB
featureCounts_rc.txt.summary
350 B
results
Directory
sample1_R1_001_preprocessed_fpkm.tab.gz
418.55 kB
sample1_R1_001_preprocessed_tpm.tab.gz
417.65 kB
sample1_R1_001_preprocessed_cpm.tab.gz
290.16 kB
sample1_R1_001_preprocessed_expressions.txt.gz
1.16 MB
sample1_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
STAR
sample1_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.39 MB
sample1_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.73 MB
sample1_R1_001_preprocessed_downsampled.bam.bai
1.37 kB
sample1_R1_001_preprocessed_downsampled.bam
509.99 kB
sample1_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
sample1_R1_001_preprocessed_downsampled_SJ.out.tab
7.45 kB
STAR
sample1_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.50 MB
sample1_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.84 MB
sample1_R1_001_preprocessed_downsampled.bam
1.84 MB
sample1_R1_001_preprocessed_downsampled.bam.bai
336 B
sample1_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample1_R1_001_preprocessed_downsampled_SJ.out.tab
409 B
STAR
sample1_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
37.95 MB
sample1_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
38.03 MB
sample1_R1_001_preprocessed_stats.txt
1.82 kB
sample1_R1_001_preprocessed.bam
3.52 GB
sample1_R1_001_preprocessed.bam.bai
3.62 MB
sample1_R1_001_preprocessed_SJ.out.tab
9.66 MB
Subsample FASTQ (paired-end)
fastqc
Directory
sample1_R1_001_preprocessed_downsampled.fastq.gz
57.96 MB
sample1_R2_001_preprocessed_downsampled.fastq.gz
57.31 MB
BBDuk (paired-end)
fastqc
Directory
sample1_R1_001_preprocessed.fastq.gz
1.64 GB
sample1_R2_001_preprocessed.fastq.gz
1.62 GB
sample1_R1_001_statistics.txt.gz
1.11 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
Samtools idxstats
idxstat_report.txt
4.11 kB
featureCounts
featureCounts_rc.txt.summary
350 B
sample5_R1_001_preprocessed_fpkm.tab.gz
418.89 kB
sample5_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample5_R1_001_preprocessed_rc.tab.gz
252.58 kB
sample5_R1_001_preprocessed_cpm.tab.gz
292.11 kB
sample5_R1_001_preprocessed_expressions.txt.gz
1.16 MB
results
Directory
sample5_R1_001_preprocessed_tpm.tab.gz
418.05 kB
STAR
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.62 MB
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.98 MB
sample5_R1_001_preprocessed_downsampled.bam
317.79 kB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
5.43 kB
sample5_R1_001_preprocessed_downsampled.bam.bai
1.13 kB
STAR
sample5_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.65 MB
sample5_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.02 MB
sample5_R1_001_preprocessed_downsampled.bam.bai
336 B
sample5_R1_001_preprocessed_downsampled.bam
1.82 MB
sample5_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample5_R1_001_preprocessed_downsampled_SJ.out.tab
259 B
Subsample FASTQ (paired-end)
fastqc
Directory
sample5_R2_001_preprocessed_downsampled.fastq.gz
58.12 MB
sample5_R1_001_preprocessed_downsampled.fastq.gz
58.48 MB
BBDuk (paired-end)
sample5_R1_001_preprocessed.fastq.gz
1.82 GB
sample5_R2_001_preprocessed.fastq.gz
1.81 GB
fastqc
Directory
sample5_R1_001_statistics.txt.gz
1.13 kB
FASTQ file (paired-end)
sample5_R2_001.fastq.gz
2.61 GB
fastqc
Directory
sample5_R1_001_fastqc.zip
790.41 kB
stderr.txt
1.75 kB
sample5_R2_001_fastqc.zip
795.40 kB
sample5_R1_001.fastq.gz
2.50 GB
FASTQ file (paired-end)
fastqc
Directory
sample2_R1_001.fastq.gz
2.37 GB
sample2_R2_001.fastq.gz
2.51 GB
stderr.txt
1.84 kB
sample2_R1_001_fastqc.zip
793.52 kB
sample2_R2_001_fastqc.zip
805.88 kB
STAR
sample2_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.61 MB
sample2_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.00 MB
sample2_R1_001_preprocessed_downsampled.bam
454.05 kB
sample2_R1_001_preprocessed_downsampled.bam.bai
1.29 kB
sample2_R1_001_preprocessed_downsampled_SJ.out.tab
6.89 kB
sample2_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
sample2_R1_001_preprocessed_downsampled.bam.bai
336 B
sample2_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample2_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.80 MB
sample2_R1_001_preprocessed_downsampled.bam
1.67 MB
sample2_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.19 MB
sample2_R1_001_preprocessed_downsampled_SJ.out.tab
51 B
Subsample FASTQ (paired-end)
fastqc
Directory
sample2_R1_001_preprocessed_downsampled.fastq.gz
58.17 MB
sample2_R2_001_preprocessed_downsampled.fastq.gz
57.57 MB
Samtools idxstats
idxstat_report.txt
4.09 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
350 B
sample3_R1_001_preprocessed_fpkm.tab.gz
413.50 kB
sample3_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample3_R1_001_preprocessed_rc.tab.gz
252.48 kB
sample3_R1_001_preprocessed_cpm.tab.gz
290.65 kB
sample3_R1_001_preprocessed_expressions.txt.gz
1.15 MB
sample3_R1_001_preprocessed_tpm.tab.gz
412.61 kB
STAR
sample3_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.63 MB
sample3_R1_001_preprocessed_downsampled.bam
1.42 MB
sample3_R1_001_preprocessed_downsampled.bam.bai
336 B
sample3_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample3_R1_001_preprocessed_downsampled_SJ.out.tab
258 B
sample3_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.14 MB
STAR
sample3_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
34.71 MB
sample3_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
34.79 MB
sample3_R1_001_preprocessed.bam.bai
3.40 MB
sample3_R1_001_preprocessed.bam
3.34 GB
sample3_R1_001_preprocessed_SJ.out.tab
9.22 MB
sample3_R1_001_preprocessed_stats.txt
1.82 kB
Subsample FASTQ (paired-end)
sample3_R2_001_preprocessed_downsampled.fastq.gz
57.39 MB
sample3_R1_001_preprocessed_downsampled.fastq.gz
57.87 MB
fastqc
Directory
BBDuk (paired-end)
fastqc
Directory
sample3_R1_001_preprocessed.fastq.gz
1.58 GB
sample3_R2_001_preprocessed.fastq.gz
1.57 GB
sample3_R1_001_statistics.txt.gz
1.09 kB
FASTQ file (paired-end)
sample3_R1_001.fastq.gz
2.20 GB
fastqc
Directory
sample3_R2_001.fastq.gz
2.30 GB
sample3_R2_001_fastqc.zip
804.47 kB
sample3_R1_001_fastqc.zip
797.35 kB
stderr.txt
1.75 kB
FASTQ file (paired-end)
stderr.txt
1.79 kB
fastqc
Directory
sample12_R1_001.fastq.gz
2.28 GB
sample12_R2_001.fastq.gz
2.39 GB
sample12_R1_001_fastqc.zip
791.33 kB
sample12_R2_001_fastqc.zip
803.23 kB
MultiQC
multiqc_report.html
1.22 MB
multiqc_data
Directory
FASTQ file (paired-end)
sample9_R1_001.fastq.gz
2.26 GB
stderr.txt
1.75 kB
fastqc
Directory
sample9_R1_001_fastqc.zip
795.93 kB
sample9_R2_001.fastq.gz
2.36 GB
sample9_R2_001_fastqc.zip
799.72 kB
featureCounts
sample9_R1_001_preprocessed_tpm.tab.gz
427.61 kB
results
Directory
sample9_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample9_R1_001_preprocessed_expressions.txt.gz
1.18 MB
sample9_R1_001_preprocessed_rc.tab.gz
252.99 kB
featureCounts_rc.txt.summary
351 B
sample9_R1_001_preprocessed_fpkm.tab.gz
428.43 kB
sample9_R1_001_preprocessed_cpm.tab.gz
290.87 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.22 MB
Subsample FASTQ (paired-end)
fastqc
Directory
sample12_R1_001_preprocessed_downsampled.fastq.gz
57.76 MB
sample12_R2_001_preprocessed_downsampled.fastq.gz
57.35 MB
STAR
sample12_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
25.41 MB
sample12_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
25.34 MB
sample12_R1_001_preprocessed.bam.bai
3.61 MB
sample12_R1_001_preprocessed_SJ.out.tab
8.93 MB
sample12_R1_001_preprocessed_stats.txt
1.82 kB
sample12_R1_001_preprocessed.bam
3.64 GB
STAR
sample9_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
44.04 MB
sample9_R1_001_preprocessed.bam
3.64 GB
sample9_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
43.49 MB
sample9_R1_001_preprocessed.bam.bai
3.69 MB
sample9_R1_001_preprocessed_stats.txt
1.82 kB
sample9_R1_001_preprocessed_SJ.out.tab
8.64 MB
STAR
sample12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.90 MB
sample12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.48 MB
sample12_R1_001_preprocessed_downsampled.bam.bai
336 B
sample12_R1_001_preprocessed_downsampled.bam
2.55 MB
sample12_R1_001_preprocessed_downsampled_SJ.out.tab
257 B
sample12_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
STAR
sample12_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.28 MB
sample12_R1_001_preprocessed_downsampled.bam.bai
1.05 kB
sample12_R1_001_preprocessed_downsampled.bam
418.80 kB
sample12_R1_001_preprocessed_downsampled_SJ.out.tab
7.93 kB
sample12_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
sample12_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.86 MB
STAR
sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.33 MB
sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.79 MB
sample9_R1_001_preprocessed_downsampled.bam
3.36 MB
sample9_R1_001_preprocessed_downsampled.bam.bai
336 B
sample9_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample9_R1_001_preprocessed_downsampled_SJ.out.tab
252 B
STAR
sample9_R1_001_preprocessed_downsampled.bam.bai
832 B
sample9_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
57.19 MB
sample9_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
sample9_R1_001_preprocessed_downsampled.bam
318.26 kB
sample9_R1_001_preprocessed_downsampled_SJ.out.tab
6.11 kB
sample9_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.64 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
351 B
sample12_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
sample12_R1_001_preprocessed_fpkm.tab.gz
411.17 kB
sample12_R1_001_preprocessed_rc.tab.gz
251.39 kB
sample12_R1_001_preprocessed_tpm.tab.gz
409.96 kB
sample12_R1_001_preprocessed_cpm.tab.gz
290.54 kB
sample12_R1_001_preprocessed_expressions.txt.gz
1.14 MB
DESeq2
diffexp_deseq2.tab.gz
1.06 MB
count_matrix.tab.gz
211.63 kB
de_file.tab.gz
718.12 kB
STAR
sample5_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.00 MB
sample5_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
27.13 MB
sample5_R1_001_preprocessed.bam.bai
3.64 MB
sample5_R1_001_preprocessed_SJ.out.tab
8.98 MB
sample5_R1_001_preprocessed_stats.txt
1.82 kB
sample5_R1_001_preprocessed.bam
3.80 GB
featureCounts
featureCounts_rc.txt.summary
350 B
sample2_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
results
Directory
sample2_R1_001_preprocessed_fpkm.tab.gz
418.55 kB
sample2_R1_001_preprocessed_tpm.tab.gz
417.56 kB
sample2_R1_001_preprocessed_rc.tab.gz
252.77 kB
sample2_R1_001_preprocessed_cpm.tab.gz
293.45 kB
sample2_R1_001_preprocessed_expressions.txt.gz
1.16 MB
STAR
sample2_R1_001_preprocessed.bam.bai
3.62 MB
sample2_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
36.54 MB
sample2_R1_001_preprocessed.bam
3.62 GB
sample2_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
36.70 MB
sample2_R1_001_preprocessed_stats.txt
1.82 kB
sample2_R1_001_preprocessed_SJ.out.tab
9.17 MB
BBDuk (paired-end)
fastqc
Directory
sample2_R1_001_preprocessed.fastq.gz
1.71 GB
sample2_R2_001_preprocessed.fastq.gz
1.69 GB
sample2_R1_001_statistics.txt.gz
1.08 kB
STAR
sample3_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
57.31 MB
sample3_R1_001_preprocessed_downsampled.bam
469.71 kB
sample3_R2_001_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.82 MB
sample3_R1_001_preprocessed_downsampled.bam.bai
1.29 kB
sample3_R1_001_preprocessed_downsampled_SJ.out.tab
7.52 kB
sample3_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
DESeq2
de_file.tab.gz
803.83 kB
count_matrix.tab.gz
208.48 kB
diffexp_deseq2.tab.gz
1.13 MB
Samtools idxstats
idxstat_report.txt
4.10 kB
Samtools idxstats
idxstat_report.txt
4.08 kB
Subsample FASTQ (paired-end)
fastqc
Directory
sample9_R2_001_preprocessed_downsampled.fastq.gz
57.68 MB
sample9_R1_001_preprocessed_downsampled.fastq.gz
58.13 MB
BBDuk (paired-end)
fastqc
Directory
sample12_R1_001_preprocessed.fastq.gz
1.64 GB
sample12_R2_001_preprocessed.fastq.gz
1.63 GB
sample12_R1_001_statistics.txt.gz
1.19 kB
BBDuk (paired-end)
fastqc
Directory
sample9_R2_001_preprocessed.fastq.gz
1.61 GB
sample9_R1_001_preprocessed.fastq.gz
1.62 GB
sample9_R1_001_statistics.txt.gz
1.19 kB
DESeq2
diffexp_deseq2.tab.gz
1.08 MB
de_file.tab.gz
732.63 kB
count_matrix.tab.gz
211.69 kB