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Folder iconTargeted RNA Seq in mES-derived Neurons

Andrea Elser
Aug. 13, 2019
This experiment aims to study splicing in mES-derived neurons. QuantSeqFlex Targeted RNASeq was used with targeted first strand synthesis primers in Ank3 and control primers in Actb and B2m to study splicing in differentiated mES cells.

No Sample

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A17_S181_L006_R1_001_preprocessed_downsampled.fastq.gz
50.86 MB
BBDuk (single-end)
fastqc
Directory
ELS443A18_S182_L006_R1_001_statistics.txt.gz
680 B
ELS443A18_S182_L006_R1_001_preprocessed.fastq.gz
518.53 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ELS443A31_S197_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.01 MB
ELS443A31_S197_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A31_S197_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A31_S197_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A31_S197_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ELS443A9_S206_L006_R1_001_preprocessed_downsampled.bam.bai
1.02 kB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.97 MB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled.bam
672.81 kB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled_SJ.out.tab
4.35 kB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
Samtools idxstats
idxstat_report.txt
1.39 kB
Samtools idxstats
idxstat_report.txt
1.40 kB
STAR
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.bam
999.55 kB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.83 MB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.bam.bai
1.38 kB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.86 kB
STAR
ELS443A10_S174_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.13 MB
ELS443A10_S174_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A10_S174_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A10_S174_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A10_S174_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
Samtools idxstats
idxstat_report.txt
1.36 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
1.39 kB
Samtools idxstats
idxstat_report.txt
1.34 kB
Samtools idxstats
idxstat_report.txt
1.34 kB
Samtools idxstats
idxstat_report.txt
1.34 kB
featureCounts
results
Directory
ELS443A7_S204_L006_R1_001_preprocessed_fpkm.tab.gz
224.25 kB
featureCounts_rc.txt.summary
352 B
ELS443A7_S204_L006_R1_001_preprocessed_rc.tab.gz
188.10 kB
ELS443A7_S204_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A7_S204_L006_R1_001_preprocessed_tpm.tab.gz
224.82 kB
ELS443A7_S204_L006_R1_001_preprocessed_cpm.tab.gz
163.00 kB
ELS443A7_S204_L006_R1_001_preprocessed_expressions.txt.gz
591.15 kB
featureCounts
ELS443A20_S185_L006_R1_001_preprocessed_tpm.tab.gz
259.77 kB
ELS443A20_S185_L006_R1_001_preprocessed_rc.tab.gz
199.42 kB
ELS443A20_S185_L006_R1_001_preprocessed_fpkm.tab.gz
259.57 kB
ELS443A20_S185_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
featureCounts_rc.txt.summary
357 B
ELS443A20_S185_L006_R1_001_preprocessed_expressions.txt.gz
699.07 kB
ELS443A20_S185_L006_R1_001_preprocessed_cpm.tab.gz
185.52 kB
results
Directory
featureCounts
results
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featureCounts_rc.txt.summary
354 B
ELS443A10_S174_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A10_S174_L006_R1_001_preprocessed_rc.tab.gz
192.70 kB
ELS443A10_S174_L006_R1_001_preprocessed_expressions.txt.gz
644.15 kB
ELS443A10_S174_L006_R1_001_preprocessed_cpm.tab.gz
170.13 kB
ELS443A10_S174_L006_R1_001_preprocessed_fpkm.tab.gz
243.90 kB
ELS443A10_S174_L006_R1_001_preprocessed_tpm.tab.gz
244.23 kB
Samtools idxstats
idxstat_report.txt
1.35 kB
FASTQ file (single-end)
fastqc
Directory
ELS443A6_S203_L006_R1_001.fastq.gz
48.65 MB
ELS443A6_S203_L006_R1_001_fastqc.zip
435.77 kB
stderr.txt
1.09 kB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
ELS443A29_S194_L006_R1_001_preprocessed_downsampled.fastq.gz
51.81 MB
fastqc
Directory
FASTQ file (single-end)
ELS443A13_ELS443A21.merge.fastq.gz
339.83 MB
fastqc
Directory
ELS443A13_ELS443A21.merge_fastqc.zip
423.82 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
fastqc
Directory
ELS443A14_ELS443A22.merge_fastqc.zip
427.05 kB
stderr.txt
1.14 kB
ELS443A14_ELS443A22.merge.fastq.gz
385.73 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
1.37 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A20_S185_L006_R1_001_preprocessed_downsampled.fastq.gz
52.49 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
ELS443A31_S197_L006_R1_001_preprocessed_downsampled.fastq.gz
52.36 MB
fastqc
Directory
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A6_S203_L006_R1_001_preprocessed_downsampled.fastq.gz
36.54 MB
BBDuk (single-end)
fastqc
Directory
ELS443A19_S183_L006_R1_001_statistics.txt.gz
747 B
ELS443A19_S183_L006_R1_001_preprocessed.fastq.gz
420.91 MB
BBDuk (single-end)
fastqc
Directory
ELS443A20_S185_L006_R1_001_preprocessed.fastq.gz
541.71 MB
ELS443A20_S185_L006_R1_001_statistics.txt.gz
605 B
STAR
ELS443A10_S174_L006_R1_001_preprocessed.bam
28.06 MB
ELS443A10_S174_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
111.76 MB
ELS443A10_S174_L006_R1_001_preprocessed.bam.bai
1.87 MB
ELS443A10_S174_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A10_S174_L006_R1_001_preprocessed_SJ.out.tab
558.27 kB
ELS443A10_S174_L006_R1_001_preprocessed.bw
1.13 MB
BBDuk (single-end)
fastqc
Directory
ELS443A3_S195_L006_R1_001_preprocessed.fastq.gz
47.42 MB
ELS443A3_S195_L006_R1_001_statistics.txt.gz
499 B
BBDuk (single-end)
fastqc
Directory
ELS443A6_S203_L006_R1_001_preprocessed.fastq.gz
36.54 MB
ELS443A6_S203_L006_R1_001_statistics.txt.gz
500 B
STAR
ELS443A25_S190_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
893.69 MB
ELS443A25_S190_L006_R1_001_preprocessed.bam
205.70 MB
ELS443A25_S190_L006_R1_001_preprocessed.bam.bai
2.41 MB
ELS443A25_S190_L006_R1_001_preprocessed_SJ.out.tab
1.01 MB
ELS443A25_S190_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A25_S190_L006_R1_001_preprocessed.bw
3.19 MB
STAR
ELS443A13_ELS443A21.merge_preprocessed_downsampled.bam.bai
1.21 kB
ELS443A13_ELS443A21.merge_preprocessed_downsampled.bam
1014.56 kB
ELS443A13_ELS443A21.merge_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A13_ELS443A21.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.28 MB
ELS443A13_ELS443A21.merge_preprocessed_downsampled_SJ.out.tab
5.35 kB
STAR
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.68 MB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
STAR
ELS443A7_S204_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
61.96 MB
ELS443A7_S204_L006_R1_001_preprocessed.bam.bai
1.69 MB
ELS443A7_S204_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A7_S204_L006_R1_001_preprocessed.bam
13.65 MB
ELS443A7_S204_L006_R1_001_preprocessed_SJ.out.tab
369.47 kB
ELS443A7_S204_L006_R1_001_preprocessed.bw
717.82 kB
Samtools idxstats
idxstat_report.txt
1.37 kB
STAR
ELS443A9_S206_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
80.86 MB
ELS443A9_S206_L006_R1_001_preprocessed.bam
16.23 MB
ELS443A9_S206_L006_R1_001_preprocessed.bw
744.49 kB
ELS443A9_S206_L006_R1_001_preprocessed_SJ.out.tab
368.43 kB
ELS443A9_S206_L006_R1_001_preprocessed.bam.bai
1.71 MB
ELS443A9_S206_L006_R1_001_preprocessed_stats.txt
1.80 kB
Samtools idxstats
idxstat_report.txt
1.34 kB
Samtools idxstats
idxstat_report.txt
1.35 kB
STAR
ELS443A12_S176_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.78 MB
ELS443A12_S176_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A12_S176_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A12_S176_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A12_S176_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
STAR
ELS443A14_ELS443A22.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.34 MB
ELS443A14_ELS443A22.merge_preprocessed_downsampled_SJ.out.tab
5.01 kB
ELS443A14_ELS443A22.merge_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A14_ELS443A22.merge_preprocessed_downsampled.bam.bai
1.30 kB
ELS443A14_ELS443A22.merge_preprocessed_downsampled.bam
920.54 kB
STAR
ELS443A16_S180_L006_R1_001_preprocessed_downsampled.bam.bai
1.40 kB
ELS443A16_S180_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.68 MB
ELS443A16_S180_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A16_S180_L006_R1_001_preprocessed_downsampled.bam
866.25 kB
ELS443A16_S180_L006_R1_001_preprocessed_downsampled_SJ.out.tab
6.74 kB
FASTQ file (single-end)
fastqc
Directory
ELS443A3_S195_L006_R1_001.fastq.gz
63.59 MB
stderr.txt
1.09 kB
ELS443A3_S195_L006_R1_001_fastqc.zip
432.90 kB
STAR
ELS443A1_S173_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A1_S173_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.68 MB
ELS443A1_S173_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A1_S173_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A1_S173_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
STAR
ELS443A27_S192_L006_R1_001_preprocessed_downsampled.bam.bai
200 B
ELS443A27_S192_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.83 MB
ELS443A27_S192_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A27_S192_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A27_S192_L006_R1_001_preprocessed_downsampled.bam
637 B
STAR
ELS443A25_S190_L006_R1_001_preprocessed_downsampled.bam
1.27 MB
ELS443A25_S190_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.91 MB
ELS443A25_S190_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A25_S190_L006_R1_001_preprocessed_downsampled.bam.bai
1.42 kB
ELS443A25_S190_L006_R1_001_preprocessed_downsampled_SJ.out.tab
8.09 kB
STAR
ELS443A24_S189_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.91 MB
ELS443A24_S189_L006_R1_001_preprocessed_downsampled.bam.bai
128 B
ELS443A24_S189_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A24_S189_L006_R1_001_preprocessed_downsampled.bam
723 B
ELS443A24_S189_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
STAR
ELS443A30_S196_L006_R1_001_preprocessed_downsampled.bam.bai
1.26 kB
ELS443A30_S196_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.41 MB
ELS443A30_S196_L006_R1_001_preprocessed_downsampled.bam
811.75 kB
ELS443A30_S196_L006_R1_001_preprocessed_downsampled_SJ.out.tab
7.20 kB
ELS443A30_S196_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A32_ELS443A34.merge_preprocessed_downsampled.fastq.gz
52.29 MB
FASTQ file (single-end)
ELS443A4_S201_L006_R1_001.fastq.gz
94.09 MB
ELS443A4_S201_L006_R1_001_fastqc.zip
431.23 kB
stderr.txt
1.09 kB
fastqc
Directory
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A27_S192_L006_R1_001_preprocessed_downsampled.fastq.gz
52.18 MB
Samtools idxstats
idxstat_report.txt
1.38 kB
STAR
ELS443A28_S193_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.64 MB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled.bam.bai
1.02 kB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled.bam
663.59 kB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled_SJ.out.tab
4.43 kB
featureCounts
ELS443A8_S205_L006_R1_001_preprocessed_fpkm.tab.gz
228.96 kB
results
Directory
ELS443A8_S205_L006_R1_001_preprocessed_rc.tab.gz
188.89 kB
ELS443A8_S205_L006_R1_001_preprocessed_tpm.tab.gz
229.17 kB
featureCounts_rc.txt.summary
352 B
ELS443A8_S205_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A8_S205_L006_R1_001_preprocessed_cpm.tab.gz
164.22 kB
ELS443A8_S205_L006_R1_001_preprocessed_expressions.txt.gz
602.20 kB
Subsample FASTQ (single-end)
ELS443A25_S190_L006_R1_001_preprocessed_downsampled.fastq.gz
52.41 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
1.38 kB
Samtools idxstats
idxstat_report.txt
1.38 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
featureCounts
results
Directory
featureCounts_rc.txt.summary
350 B
ELS443A2_S184_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A2_S184_L006_R1_001_preprocessed_cpm.tab.gz
156.15 kB
ELS443A2_S184_L006_R1_001_preprocessed_rc.tab.gz
183.33 kB
ELS443A2_S184_L006_R1_001_preprocessed_tpm.tab.gz
202.93 kB
ELS443A2_S184_L006_R1_001_preprocessed_expressions.txt.gz
536.31 kB
ELS443A2_S184_L006_R1_001_preprocessed_fpkm.tab.gz
202.64 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
354 B
ELS443A17_S181_L006_R1_001_preprocessed_fpkm.tab.gz
228.39 kB
ELS443A17_S181_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A17_S181_L006_R1_001_preprocessed_tpm.tab.gz
228.59 kB
ELS443A17_S181_L006_R1_001_preprocessed_rc.tab.gz
189.26 kB
ELS443A17_S181_L006_R1_001_preprocessed_expressions.txt.gz
602.67 kB
ELS443A17_S181_L006_R1_001_preprocessed_cpm.tab.gz
164.92 kB
FASTQ file (single-end)
ELS443A16_S180_L006_R1_001_fastqc.zip
431.84 kB
fastqc
Directory
stderr.txt
1.11 kB
ELS443A16_S180_L006_R1_001.fastq.gz
578.00 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A24_S189_L006_R1_001_preprocessed_downsampled.fastq.gz
52.25 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A4_S201_L006_R1_001_preprocessed_downsampled.fastq.gz
49.48 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
1.38 kB
STAR
ELS443A2_S184_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A2_S184_L006_R1_001_preprocessed_downsampled.bam.bai
776 B
ELS443A2_S184_L006_R1_001_preprocessed_downsampled.bam
437.60 kB
ELS443A2_S184_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
25.20 MB
ELS443A2_S184_L006_R1_001_preprocessed_downsampled_SJ.out.tab
2.91 kB
Subsample FASTQ (single-end)
ELS443A2_S184_L006_R1_001_preprocessed_downsampled.fastq.gz
25.75 MB
fastqc
Directory
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A30_S196_L006_R1_001_preprocessed_downsampled.fastq.gz
51.45 MB
featureCounts
ELS443A3_S195_L006_R1_001_preprocessed_rc.tab.gz
186.99 kB
featureCounts_rc.txt.summary
351 B
results
Directory
ELS443A3_S195_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A3_S195_L006_R1_001_preprocessed_tpm.tab.gz
223.15 kB
ELS443A3_S195_L006_R1_001_preprocessed_cpm.tab.gz
161.15 kB
ELS443A3_S195_L006_R1_001_preprocessed_expressions.txt.gz
584.78 kB
ELS443A3_S195_L006_R1_001_preprocessed_fpkm.tab.gz
222.55 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A26_S191_L006_R1_001_preprocessed_downsampled.fastq.gz
52.38 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A7_S204_L006_R1_001_preprocessed_downsampled.fastq.gz
49.37 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
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FASTQ file (single-end)
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FASTQ file (single-end)
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129.62 MB
stderr.txt
1.11 kB
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FASTQ file (single-end)
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Directory
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1.26 GB
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FASTQ file (single-end)
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Directory
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FASTQ file (single-end)
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stderr.txt
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ELS443A26_S191_L006_R1_001.fastq.gz
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FASTQ file (single-end)
ELS443A25_S190_L006_R1_001.fastq.gz
1.35 GB
fastqc
Directory
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stderr.txt
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FASTQ file (single-end)
ELS443A27_S192_L006_R1_001.fastq.gz
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fastqc
Directory
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FASTQ file (single-end)
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Directory
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stderr.txt
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FASTQ file (single-end)
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Directory
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fastqc
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FASTQ file (single-end)
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FASTQ file (single-end)
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Directory
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92.04 MB
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FASTQ file (single-end)
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Directory
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98.18 MB
ELS443A8_S205_L006_R1_001_fastqc.zip
425.57 kB
FASTQ file (single-end)
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Directory
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119.27 MB
stderr.txt
1.09 kB
ELS443A9_S206_L006_R1_001_fastqc.zip
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FASTQ file (single-end)
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1.47 GB
fastqc
Directory
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FASTQ file (single-end)
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Directory
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1.03 GB
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fastqc
Directory
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BBDuk (single-end)
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Subsample FASTQ (single-end)
fastqc
Directory
ELS443A16_S180_L006_R1_001_preprocessed_downsampled.fastq.gz
50.76 MB
Samtools idxstats
idxstat_report.txt
1.37 kB
MultiQC
multiqc_data
Directory
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1.20 MB
Samtools idxstats
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1.36 kB
STAR
ELS443A13_ELS443A21.merge_preprocessed_stats.txt
1.80 kB
ELS443A13_ELS443A21.merge_preprocessed.bam
48.20 MB
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224.49 MB
ELS443A13_ELS443A21.merge_preprocessed.bw
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Samtools idxstats
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Subsample FASTQ (single-end)
fastqc
Directory
ELS443A13_ELS443A21.merge_preprocessed_downsampled.fastq.gz
52.73 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A10_S174_L006_R1_001_preprocessed_downsampled.fastq.gz
51.48 MB
Samtools idxstats
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1.38 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.fastq.gz
51.03 MB
Samtools idxstats
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1.37 kB
Samtools idxstats
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1.35 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
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1.34 kB
Samtools idxstats
idxstat_report.txt
1.38 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
ELS443A1_S173_L006_R1_001_preprocessed_downsampled.fastq.gz
47.01 MB
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
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1.35 kB
Samtools idxstats
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1.39 kB
featureCounts
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354 B
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Directory
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fastqc
Directory
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52.22 MB
Samtools idxstats
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1.36 kB
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Directory
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48.11 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A3_S195_L006_R1_001_preprocessed_downsampled.fastq.gz
47.42 MB
Subsample FASTQ (single-end)
fastqc
Directory
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50.89 MB
STAR
ELS443A12_S176_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
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BBDuk (single-end)
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Directory
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ELS443A12_S176_L006_R1_001_preprocessed.fastq.gz
212.54 MB
BBDuk (single-end)
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Directory
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286.34 MB
ELS443A14_ELS443A22.merge_statistics.txt.gz
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BBDuk (single-end)
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fastqc
Directory
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427.97 MB
BBDuk (single-end)
ELS443A15_ELS443A23.merge_preprocessed.fastq.gz
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Directory
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BBDuk (single-end)
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Directory
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47.37 MB
ELS443A1_S173_L006_R1_001_statistics.txt.gz
490 B
BBDuk (single-end)
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Directory
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808.12 MB
ELS443A27_S192_L006_R1_001_statistics.txt.gz
820 B
BBDuk (single-end)
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Directory
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ELS443A24_S189_L006_R1_001_preprocessed.fastq.gz
633.18 MB
BBDuk (single-end)
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Directory
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STAR
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ELS443A11_S175_L006_R1_001_preprocessed.bam.bai
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BBDuk (single-end)
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Directory
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96.86 MB
ELS443A17_S181_L006_R1_001_statistics.txt.gz
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BBDuk (single-end)
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Directory
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BBDuk (single-end)
ELS443A26_S191_L006_R1_001_preprocessed.fastq.gz
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Directory
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BBDuk (single-end)
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Directory
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BBDuk (single-end)
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Directory
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Directory
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ELS443A29_S194_L006_R1_001_statistics.txt.gz
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BBDuk (single-end)
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Directory
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BBDuk (single-end)
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ELS443A32_ELS443A34.merge_preprocessed.fastq.gz
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Directory
BBDuk (single-end)
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Directory
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ELS443A5_S202_L006_R1_001_preprocessed.fastq.gz
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BBDuk (single-end)
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Directory
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ELS443A33_S199_L006_R1_001_statistics.txt.gz
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BBDuk (single-end)
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Directory
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70.33 MB
ELS443A4_S201_L006_R1_001_statistics.txt.gz
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BBDuk (single-end)
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Directory
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493 B
ELS443A9_S206_L006_R1_001_preprocessed.fastq.gz
89.86 MB
BBDuk (single-end)
fastqc
Directory
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ELS443A31_S197_L006_R1_001_preprocessed.fastq.gz
997.73 MB
STAR
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49.62 MB
STAR
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ELS443A19_S183_L006_R1_001_preprocessed.bam
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379.48 MB
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STAR
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385.29 MB
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STAR
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279.86 MB
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79.35 MB
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STAR
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42.62 MB
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STAR
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458.52 MB
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ELS443A18_S182_L006_R1_001_preprocessed.bam
96.12 MB
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STAR
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99.47 MB
ELS443A20_S185_L006_R1_001_preprocessed.bam.bai
2.22 MB
ELS443A20_S185_L006_R1_001_preprocessed_stats.txt
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ELS443A20_S185_L006_R1_001_preprocessed.bw
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STAR
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STAR
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2.12 MB
Samtools idxstats
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featureCounts
results
Directory
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355 B
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STAR
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STAR
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ELS443A13_ELS443A21.merge_preprocessed_downsampled_SJ.out.tab
0 B
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ELS443A13_ELS443A21.merge_preprocessed_downsampled.bam.bai
56 B
ELS443A13_ELS443A21.merge_preprocessed_downsampled.bam
470 B
featureCounts
results
Directory
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240.65 kB
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191.80 kB
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354 B
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STAR
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ELS443A17_S181_L006_R1_001_preprocessed_downsampled.bam
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Ank3 E11 Day 15_Ank3 RSX

Samtools idxstats
idxstat_report.txt
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STAR
ELS443A16_S180_L006_R1_001_preprocessed_downsampled.bam.bai
1.40 kB
ELS443A16_S180_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.68 MB
ELS443A16_S180_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A16_S180_L006_R1_001_preprocessed_downsampled.bam
866.25 kB
ELS443A16_S180_L006_R1_001_preprocessed_downsampled_SJ.out.tab
6.74 kB
FASTQ file (single-end)
ELS443A16_S180_L006_R1_001_fastqc.zip
431.84 kB
fastqc
Directory
stderr.txt
1.11 kB
ELS443A16_S180_L006_R1_001.fastq.gz
578.00 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A16_S180_L006_R1_001_preprocessed_downsampled.fastq.gz
50.76 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
ELS443A16_S180_L006_R1_001_statistics.txt.gz
683 B
fastqc
Directory
ELS443A16_S180_L006_R1_001_preprocessed.fastq.gz
427.97 MB
STAR
ELS443A16_S180_L006_R1_001_preprocessed.bam.bai
2.14 MB
ELS443A16_S180_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
385.29 MB
ELS443A16_S180_L006_R1_001_preprocessed.bw
1.82 MB
ELS443A16_S180_L006_R1_001_preprocessed.bam
70.24 MB
ELS443A16_S180_L006_R1_001_preprocessed_SJ.out.tab
674.74 kB
ELS443A16_S180_L006_R1_001_preprocessed_stats.txt
1.81 kB
STAR
ELS443A16_S180_L006_R1_001_preprocessed_downsampled.bam.bai
272 B
ELS443A16_S180_L006_R1_001_preprocessed_downsampled.bam
1012 B
ELS443A16_S180_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A16_S180_L006_R1_001_preprocessed_downsampled_SJ.out.tab
41 B
ELS443A16_S180_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.41 MB
featureCounts
ELS443A16_S180_L006_R1_001_preprocessed_rc.tab.gz
197.08 kB
ELS443A16_S180_L006_R1_001_preprocessed_tpm.tab.gz
252.62 kB
featureCounts_rc.txt.summary
356 B
ELS443A16_S180_L006_R1_001_preprocessed_fpkm.tab.gz
252.29 kB
results
Directory
ELS443A16_S180_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A16_S180_L006_R1_001_preprocessed_expressions.txt.gz
676.63 kB
ELS443A16_S180_L006_R1_001_preprocessed_cpm.tab.gz
180.87 kB

WT Day 10_Ank3 X2

Samtools idxstats
idxstat_report.txt
1.37 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A26_S191_L006_R1_001_preprocessed_downsampled.fastq.gz
52.38 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
featureCounts
results
Directory
ELS443A26_S191_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A26_S191_L006_R1_001_preprocessed_fpkm.tab.gz
244.47 kB
ELS443A26_S191_L006_R1_001_preprocessed_cpm.tab.gz
176.67 kB
ELS443A26_S191_L006_R1_001_preprocessed_tpm.tab.gz
244.53 kB
ELS443A26_S191_L006_R1_001_preprocessed_expressions.txt.gz
654.44 kB
featureCounts_rc.txt.summary
355 B
ELS443A26_S191_L006_R1_001_preprocessed_rc.tab.gz
194.92 kB
STAR
ELS443A26_S191_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.39 MB
ELS443A26_S191_L006_R1_001_preprocessed_downsampled.bam
745.84 kB
ELS443A26_S191_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A26_S191_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.15 kB
ELS443A26_S191_L006_R1_001_preprocessed_downsampled.bam.bai
1.05 kB
STAR
ELS443A26_S191_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.04 MB
ELS443A26_S191_L006_R1_001_preprocessed_downsampled.bam.bai
128 B
ELS443A26_S191_L006_R1_001_preprocessed_downsampled.bam
650 B
ELS443A26_S191_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A26_S191_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
FASTQ file (single-end)
fastqc
Directory
ELS443A26_S191_L006_R1_001_fastqc.zip
438.51 kB
stderr.txt
1.11 kB
ELS443A26_S191_L006_R1_001.fastq.gz
442.42 MB
BBDuk (single-end)
ELS443A26_S191_L006_R1_001_preprocessed.fastq.gz
330.87 MB
fastqc
Directory
ELS443A26_S191_L006_R1_001_statistics.txt.gz
557 B
STAR
ELS443A26_S191_L006_R1_001_preprocessed.bam.bai
2.01 MB
ELS443A26_S191_L006_R1_001_preprocessed_SJ.out.tab
574.49 kB
ELS443A26_S191_L006_R1_001_preprocessed.bam
54.32 MB
ELS443A26_S191_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
298.12 MB
ELS443A26_S191_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A26_S191_L006_R1_001_preprocessed.bw
1.48 MB

WT Day 10_Ank3 X19

STAR
ELS443A27_S192_L006_R1_001_preprocessed_downsampled.bam.bai
200 B
ELS443A27_S192_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.83 MB
ELS443A27_S192_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A27_S192_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A27_S192_L006_R1_001_preprocessed_downsampled.bam
637 B
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A27_S192_L006_R1_001_preprocessed_downsampled.fastq.gz
52.18 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
FASTQ file (single-end)
ELS443A27_S192_L006_R1_001.fastq.gz
1.07 GB
fastqc
Directory
stderr.txt
1.11 kB
ELS443A27_S192_L006_R1_001_fastqc.zip
448.22 kB
BBDuk (single-end)
fastqc
Directory
ELS443A27_S192_L006_R1_001_preprocessed.fastq.gz
808.12 MB
ELS443A27_S192_L006_R1_001_statistics.txt.gz
820 B
STAR
ELS443A27_S192_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
724.62 MB
ELS443A27_S192_L006_R1_001_preprocessed.bam.bai
2.26 MB
ELS443A27_S192_L006_R1_001_preprocessed_SJ.out.tab
861.61 kB
ELS443A27_S192_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A27_S192_L006_R1_001_preprocessed.bw
2.56 MB
ELS443A27_S192_L006_R1_001_preprocessed.bam
128.36 MB
Samtools idxstats
idxstat_report.txt
1.38 kB
STAR
ELS443A27_S192_L006_R1_001_preprocessed_downsampled.bam.bai
1.24 kB
ELS443A27_S192_L006_R1_001_preprocessed_downsampled.bam
811.33 kB
ELS443A27_S192_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.15 MB
ELS443A27_S192_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A27_S192_L006_R1_001_preprocessed_downsampled_SJ.out.tab
6.47 kB
featureCounts
results
Directory
ELS443A27_S192_L006_R1_001_preprocessed_tpm.tab.gz
266.72 kB
ELS443A27_S192_L006_R1_001_preprocessed_rc.tab.gz
201.65 kB
ELS443A27_S192_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A27_S192_L006_R1_001_preprocessed_fpkm.tab.gz
266.66 kB
ELS443A27_S192_L006_R1_001_preprocessed_expressions.txt.gz
722.31 kB
featureCounts_rc.txt.summary
357 B
ELS443A27_S192_L006_R1_001_preprocessed_cpm.tab.gz
190.91 kB

WT Day 10_Actb

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ELS443A28_S193_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.64 MB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled.bam.bai
1.02 kB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled.bam
663.59 kB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled_SJ.out.tab
4.43 kB
Samtools idxstats
idxstat_report.txt
1.38 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A28_S193_L006_R1_001_preprocessed_downsampled.fastq.gz
52.54 MB
STAR
ELS443A28_S193_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.20 MB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled.bam
706 B
ELS443A28_S193_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A28_S193_L006_R1_001_preprocessed_downsampled_SJ.out.tab
40 B
ELS443A28_S193_L006_R1_001_preprocessed_downsampled.bam.bai
128 B
featureCounts
ELS443A28_S193_L006_R1_001_preprocessed_rc.tab.gz
200.19 kB
ELS443A28_S193_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
featureCounts_rc.txt.summary
357 B
ELS443A28_S193_L006_R1_001_preprocessed_fpkm.tab.gz
261.43 kB
ELS443A28_S193_L006_R1_001_preprocessed_cpm.tab.gz
189.00 kB
results
Directory
ELS443A28_S193_L006_R1_001_preprocessed_expressions.txt.gz
707.44 kB
ELS443A28_S193_L006_R1_001_preprocessed_tpm.tab.gz
261.53 kB
FASTQ file (single-end)
ELS443A28_S193_L006_R1_001.fastq.gz
1.08 GB
fastqc
Directory
stderr.txt
1.11 kB
ELS443A28_S193_L006_R1_001_fastqc.zip
450.13 kB
BBDuk (single-end)
ELS443A28_S193_L006_R1_001_preprocessed.fastq.gz
830.57 MB
ELS443A28_S193_L006_R1_001_statistics.txt.gz
671 B
fastqc
Directory
STAR
ELS443A28_S193_L006_R1_001_preprocessed_SJ.out.tab
810.34 kB
ELS443A28_S193_L006_R1_001_preprocessed.bam
127.25 MB
ELS443A28_S193_L006_R1_001_preprocessed.bam.bai
2.25 MB
ELS443A28_S193_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
750.20 MB
ELS443A28_S193_L006_R1_001_preprocessed.bw
2.40 MB
ELS443A28_S193_L006_R1_001_preprocessed_stats.txt
1.81 kB

WT Day 10_B2m

Subsample FASTQ (single-end)
ELS443A29_S194_L006_R1_001_preprocessed_downsampled.fastq.gz
51.81 MB
fastqc
Directory
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
STAR
ELS443A29_S194_L006_R1_001_preprocessed_downsampled.bam.bai
1.58 kB
ELS443A29_S194_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.40 MB
ELS443A29_S194_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A29_S194_L006_R1_001_preprocessed_downsampled_SJ.out.tab
9.63 kB
ELS443A29_S194_L006_R1_001_preprocessed_downsampled.bam
1.22 MB
STAR
ELS443A29_S194_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.46 MB
ELS443A29_S194_L006_R1_001_preprocessed_downsampled.bam.bai
200 B
ELS443A29_S194_L006_R1_001_preprocessed_downsampled.bam
634 B
ELS443A29_S194_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A29_S194_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
358 B
results
Directory
ELS443A29_S194_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A29_S194_L006_R1_001_preprocessed_rc.tab.gz
203.70 kB
ELS443A29_S194_L006_R1_001_preprocessed_fpkm.tab.gz
274.22 kB
ELS443A29_S194_L006_R1_001_preprocessed_cpm.tab.gz
195.20 kB
ELS443A29_S194_L006_R1_001_preprocessed_tpm.tab.gz
274.41 kB
ELS443A29_S194_L006_R1_001_preprocessed_expressions.txt.gz
744.41 kB
Samtools idxstats
idxstat_report.txt
1.39 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.11 kB
ELS443A29_S194_L006_R1_001.fastq.gz
1.14 GB
ELS443A29_S194_L006_R1_001_fastqc.zip
441.75 kB
BBDuk (single-end)
fastqc
Directory
ELS443A29_S194_L006_R1_001_preprocessed.fastq.gz
879.97 MB
ELS443A29_S194_L006_R1_001_statistics.txt.gz
783 B
STAR
ELS443A29_S194_L006_R1_001_preprocessed.bam
171.19 MB
ELS443A29_S194_L006_R1_001_preprocessed.bam.bai
2.37 MB
ELS443A29_S194_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A29_S194_L006_R1_001_preprocessed.bw
2.92 MB
ELS443A29_S194_L006_R1_001_preprocessed_SJ.out.tab
984.67 kB
ELS443A29_S194_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
766.96 MB

Ank3 D4 Day 10_Ank3 X2

Samtools idxstats
idxstat_report.txt
1.34 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
350 B
ELS443A2_S184_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A2_S184_L006_R1_001_preprocessed_cpm.tab.gz
156.15 kB
ELS443A2_S184_L006_R1_001_preprocessed_rc.tab.gz
183.33 kB
ELS443A2_S184_L006_R1_001_preprocessed_tpm.tab.gz
202.93 kB
ELS443A2_S184_L006_R1_001_preprocessed_expressions.txt.gz
536.31 kB
ELS443A2_S184_L006_R1_001_preprocessed_fpkm.tab.gz
202.64 kB
STAR
ELS443A2_S184_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A2_S184_L006_R1_001_preprocessed_downsampled.bam.bai
776 B
ELS443A2_S184_L006_R1_001_preprocessed_downsampled.bam
437.60 kB
ELS443A2_S184_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
25.20 MB
ELS443A2_S184_L006_R1_001_preprocessed_downsampled_SJ.out.tab
2.91 kB
Subsample FASTQ (single-end)
ELS443A2_S184_L006_R1_001_preprocessed_downsampled.fastq.gz
25.75 MB
fastqc
Directory
STAR
ELS443A2_S184_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
25.56 MB
ELS443A2_S184_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A2_S184_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A2_S184_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A2_S184_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
FASTQ file (single-end)
fastqc
Directory
ELS443A2_S184_L006_R1_001_fastqc.zip
443.24 kB
ELS443A2_S184_L006_R1_001.fastq.gz
34.20 MB
stderr.txt
1.09 kB
BBDuk (single-end)
ELS443A2_S184_L006_R1_001_statistics.txt.gz
411 B
fastqc
Directory
ELS443A2_S184_L006_R1_001_preprocessed.fastq.gz
25.75 MB
STAR
ELS443A2_S184_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
23.04 MB
ELS443A2_S184_L006_R1_001_preprocessed.bam
5.28 MB
ELS443A2_S184_L006_R1_001_preprocessed.bam.bai
1.54 MB
ELS443A2_S184_L006_R1_001_preprocessed_SJ.out.tab
199.43 kB
ELS443A2_S184_L006_R1_001_preprocessed.bw
359.31 kB
ELS443A2_S184_L006_R1_001_preprocessed_stats.txt
1.79 kB

WT Day 15_Actb

Samtools idxstats
idxstat_report.txt
1.38 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ELS443A33_S199_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.86 MB
ELS443A33_S199_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A33_S199_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A33_S199_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A33_S199_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
STAR
ELS443A33_S199_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.23 MB
ELS443A33_S199_L006_R1_001_preprocessed_downsampled.bam
746.22 kB
ELS443A33_S199_L006_R1_001_preprocessed_downsampled.bam.bai
1.10 kB
ELS443A33_S199_L006_R1_001_preprocessed_downsampled_SJ.out.tab
4.90 kB
ELS443A33_S199_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
357 B
ELS443A33_S199_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A33_S199_L006_R1_001_preprocessed_fpkm.tab.gz
260.61 kB
ELS443A33_S199_L006_R1_001_preprocessed_rc.tab.gz
200.20 kB
ELS443A33_S199_L006_R1_001_preprocessed_cpm.tab.gz
188.59 kB
ELS443A33_S199_L006_R1_001_preprocessed_tpm.tab.gz
260.87 kB
ELS443A33_S199_L006_R1_001_preprocessed_expressions.txt.gz
704.97 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.11 kB
ELS443A33_S199_L006_R1_001.fastq.gz
1.03 GB
ELS443A33_S199_L006_R1_001_fastqc.zip
445.47 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A33_S199_L006_R1_001_preprocessed_downsampled.fastq.gz
52.22 MB
BBDuk (single-end)
fastqc
Directory
ELS443A33_S199_L006_R1_001_preprocessed.fastq.gz
790.12 MB
ELS443A33_S199_L006_R1_001_statistics.txt.gz
699 B
STAR
ELS443A33_S199_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
713.02 MB
ELS443A33_S199_L006_R1_001_preprocessed.bam.bai
2.24 MB
ELS443A33_S199_L006_R1_001_preprocessed.bam
119.87 MB
ELS443A33_S199_L006_R1_001_preprocessed_SJ.out.tab
807.67 kB
ELS443A33_S199_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A33_S199_L006_R1_001_preprocessed.bw
2.36 MB

WT Day 15_Ank3 X19

Samtools idxstats
idxstat_report.txt
1.39 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A32_ELS443A34.merge_preprocessed_downsampled.fastq.gz
52.29 MB
STAR
ELS443A32_ELS443A34.merge_preprocessed_downsampled.bam
470 B
ELS443A32_ELS443A34.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.89 MB
ELS443A32_ELS443A34.merge_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A32_ELS443A34.merge_preprocessed_downsampled.bam.bai
56 B
ELS443A32_ELS443A34.merge_preprocessed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
357 B
results
Directory
ELS443A32_ELS443A34.merge_preprocessed_fpkm.tab.gz
273.08 kB
ELS443A32_ELS443A34.merge_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A32_ELS443A34.merge_preprocessed_expressions.txt.gz
744.21 kB
ELS443A32_ELS443A34.merge_preprocessed_tpm.tab.gz
273.50 kB
ELS443A32_ELS443A34.merge_preprocessed_cpm.tab.gz
196.22 kB
ELS443A32_ELS443A34.merge_preprocessed_rc.tab.gz
203.65 kB
STAR
ELS443A32_ELS443A34.merge_preprocessed_downsampled.bam.bai
1.13 kB
ELS443A32_ELS443A34.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.22 MB
ELS443A32_ELS443A34.merge_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A32_ELS443A34.merge_preprocessed_downsampled.bam
786.10 kB
ELS443A32_ELS443A34.merge_preprocessed_downsampled_SJ.out.tab
5.41 kB
FASTQ file (single-end)
ELS443A32_ELS443A34.merge.fastq.gz
1.47 GB
fastqc
Directory
stderr.txt
1.09 kB
ELS443A32_ELS443A34.merge_fastqc.zip
448.40 kB
BBDuk (single-end)
ELS443A32_ELS443A34.merge_statistics.txt.gz
769 B
ELS443A32_ELS443A34.merge_preprocessed.fastq.gz
1.10 GB
fastqc
Directory
STAR
ELS443A32_ELS443A34.merge_preprocessed_unmapped.out.mate1.fastq.gz
1010.16 MB
ELS443A32_ELS443A34.merge_preprocessed.bam.bai
2.35 MB
ELS443A32_ELS443A34.merge_preprocessed.bam
177.62 MB
ELS443A32_ELS443A34.merge_preprocessed_stats.txt
1.81 kB
ELS443A32_ELS443A34.merge_preprocessed_SJ.out.tab
970.09 kB

Ank3 D4 Day 15_Ank3 RSX

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
1.34 kB
FASTQ file (single-end)
fastqc
Directory
ELS443A6_S203_L006_R1_001.fastq.gz
48.65 MB
ELS443A6_S203_L006_R1_001_fastqc.zip
435.77 kB
stderr.txt
1.09 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A6_S203_L006_R1_001_preprocessed_downsampled.fastq.gz
36.54 MB
BBDuk (single-end)
fastqc
Directory
ELS443A6_S203_L006_R1_001_preprocessed.fastq.gz
36.54 MB
ELS443A6_S203_L006_R1_001_statistics.txt.gz
500 B
featureCounts
ELS443A6_S203_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
results
Directory
ELS443A6_S203_L006_R1_001_preprocessed_fpkm.tab.gz
212.30 kB
ELS443A6_S203_L006_R1_001_preprocessed_rc.tab.gz
185.13 kB
ELS443A6_S203_L006_R1_001_preprocessed_tpm.tab.gz
212.46 kB
ELS443A6_S203_L006_R1_001_preprocessed_cpm.tab.gz
158.67 kB
ELS443A6_S203_L006_R1_001_preprocessed_expressions.txt.gz
561.06 kB
featureCounts_rc.txt.summary
350 B
STAR
ELS443A6_S203_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
35.80 MB
ELS443A6_S203_L006_R1_001_preprocessed_downsampled.bam
610.99 kB
ELS443A6_S203_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A6_S203_L006_R1_001_preprocessed_downsampled.bam.bai
1.02 kB
ELS443A6_S203_L006_R1_001_preprocessed_downsampled_SJ.out.tab
3.79 kB
STAR
ELS443A6_S203_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A6_S203_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
36.27 MB
ELS443A6_S203_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A6_S203_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A6_S203_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
STAR
ELS443A6_S203_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
32.79 MB
ELS443A6_S203_L006_R1_001_preprocessed.bam
7.55 MB
ELS443A6_S203_L006_R1_001_preprocessed.bam.bai
1.60 MB
ELS443A6_S203_L006_R1_001_preprocessed_SJ.out.tab
262.16 kB
ELS443A6_S203_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A6_S203_L006_R1_001_preprocessed.bw
489.83 kB

Ank3 D4 Day 10_B2m

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
1.35 kB
featureCounts
ELS443A5_S202_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
featureCounts_rc.txt.summary
352 B
ELS443A5_S202_L006_R1_001_preprocessed_rc.tab.gz
187.17 kB
results
Directory
ELS443A5_S202_L006_R1_001_preprocessed_tpm.tab.gz
221.08 kB
ELS443A5_S202_L006_R1_001_preprocessed_cpm.tab.gz
161.39 kB
ELS443A5_S202_L006_R1_001_preprocessed_fpkm.tab.gz
220.73 kB
ELS443A5_S202_L006_R1_001_preprocessed_expressions.txt.gz
581.75 kB
STAR
ELS443A5_S202_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.95 MB
ELS443A5_S202_L006_R1_001_preprocessed_downsampled.bam.bai
1.38 kB
ELS443A5_S202_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A5_S202_L006_R1_001_preprocessed_downsampled_SJ.out.tab
9.48 kB
ELS443A5_S202_L006_R1_001_preprocessed_downsampled.bam
1.01 MB
STAR
ELS443A5_S202_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A5_S202_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.78 MB
ELS443A5_S202_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A5_S202_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A5_S202_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
FASTQ file (single-end)
stderr.txt
1.09 kB
fastqc
Directory
ELS443A5_S202_L006_R1_001_fastqc.zip
426.66 kB
ELS443A5_S202_L006_R1_001.fastq.gz
68.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A5_S202_L006_R1_001_preprocessed_downsampled.fastq.gz
48.11 MB
BBDuk (single-end)
fastqc
Directory
ELS443A5_S202_L006_R1_001_statistics.txt.gz
456 B
ELS443A5_S202_L006_R1_001_preprocessed.fastq.gz
51.29 MB
STAR
ELS443A5_S202_L006_R1_001_preprocessed.bam.bai
1.70 MB
ELS443A5_S202_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
45.25 MB
ELS443A5_S202_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A5_S202_L006_R1_001_preprocessed.bam
11.19 MB
ELS443A5_S202_L006_R1_001_preprocessed.bw
639.66 kB
ELS443A5_S202_L006_R1_001_preprocessed_SJ.out.tab
314.31 kB

Ank3 E11 Day 10_B2m

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A15_ELS443A23.merge_preprocessed_downsampled.fastq.gz
51.55 MB
FASTQ file (single-end)
ELS443A15_ELS443A23.merge.fastq.gz
448.87 MB
fastqc
Directory
stderr.txt
1.09 kB
ELS443A15_ELS443A23.merge_fastqc.zip
421.84 kB
Samtools idxstats
idxstat_report.txt
1.38 kB
BBDuk (single-end)
ELS443A15_ELS443A23.merge_preprocessed.fastq.gz
329.54 MB
fastqc
Directory
ELS443A15_ELS443A23.merge_statistics.txt.gz
709 B
STAR
ELS443A15_ELS443A23.merge_preprocessed.bam.bai
2.23 MB
ELS443A15_ELS443A23.merge_preprocessed_unmapped.out.mate1.fastq.gz
279.86 MB
ELS443A15_ELS443A23.merge_preprocessed_stats.txt
1.81 kB
ELS443A15_ELS443A23.merge_preprocessed.bam
79.35 MB
ELS443A15_ELS443A23.merge_preprocessed.bw
2.17 MB
ELS443A15_ELS443A23.merge_preprocessed_SJ.out.tab
852.94 kB
STAR
ELS443A15_ELS443A23.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.01 MB
ELS443A15_ELS443A23.merge_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A15_ELS443A23.merge_preprocessed_downsampled.bam.bai
2.24 kB
ELS443A15_ELS443A23.merge_preprocessed_downsampled.bam
2.33 MB
ELS443A15_ELS443A23.merge_preprocessed_downsampled_SJ.out.tab
10.36 kB
STAR
ELS443A15_ELS443A23.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.03 MB
ELS443A15_ELS443A23.merge_preprocessed_downsampled.bam.bai
272 B
ELS443A15_ELS443A23.merge_preprocessed_downsampled.bam
781 B
ELS443A15_ELS443A23.merge_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A15_ELS443A23.merge_preprocessed_downsampled_stats.txt
1.77 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
355 B
ELS443A15_ELS443A23.merge_preprocessed_fpkm.tab.gz
266.16 kB
ELS443A15_ELS443A23.merge_preprocessed_rc.tab.gz
198.81 kB
ELS443A15_ELS443A23.merge_preprocessed_tpm.tab.gz
265.89 kB
ELS443A15_ELS443A23.merge_preprocessed_expressions.txt.gz
707.75 kB
ELS443A15_ELS443A23.merge_preprocessed_cpm.tab.gz
181.88 kB
ELS443A15_ELS443A23.merge_preprocessed_featureCounts_rc.txt.gz
3.51 MB

Ank3 E11 Day 10_Ank3 X2

STAR
ELS443A12_S176_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.78 MB
ELS443A12_S176_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A12_S176_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A12_S176_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A12_S176_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A12_S176_L006_R1_001_preprocessed_downsampled.fastq.gz
51.13 MB
FASTQ file (single-end)
fastqc
Directory
ELS443A12_S176_L006_R1_001_fastqc.zip
427.50 kB
stderr.txt
1.11 kB
ELS443A12_S176_L006_R1_001.fastq.gz
284.99 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
1.36 kB
featureCounts
featureCounts_rc.txt.summary
354 B
ELS443A12_S176_L006_R1_001_preprocessed_rc.tab.gz
193.45 kB
ELS443A12_S176_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
results
Directory
ELS443A12_S176_L006_R1_001_preprocessed_tpm.tab.gz
243.60 kB
ELS443A12_S176_L006_R1_001_preprocessed_fpkm.tab.gz
243.49 kB
ELS443A12_S176_L006_R1_001_preprocessed_expressions.txt.gz
646.81 kB
ELS443A12_S176_L006_R1_001_preprocessed_cpm.tab.gz
172.58 kB
STAR
ELS443A12_S176_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
188.39 MB
ELS443A12_S176_L006_R1_001_preprocessed.bam
41.02 MB
ELS443A12_S176_L006_R1_001_preprocessed.bam.bai
1.97 MB
ELS443A12_S176_L006_R1_001_preprocessed_SJ.out.tab
584.35 kB
ELS443A12_S176_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A12_S176_L006_R1_001_preprocessed.bw
1.33 MB
BBDuk (single-end)
fastqc
Directory
ELS443A12_S176_L006_R1_001_statistics.txt.gz
660 B
ELS443A12_S176_L006_R1_001_preprocessed.fastq.gz
212.54 MB
STAR
ELS443A12_S176_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.33 MB
ELS443A12_S176_L006_R1_001_preprocessed_downsampled.bam.bai
1.71 kB
ELS443A12_S176_L006_R1_001_preprocessed_downsampled.bam
1.69 MB
ELS443A12_S176_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A12_S176_L006_R1_001_preprocessed_downsampled_SJ.out.tab
6.25 kB

Ank3 E11 Day 15_Actb

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
fastqc
Directory
ELS443A19_S183_L006_R1_001_statistics.txt.gz
747 B
ELS443A19_S183_L006_R1_001_preprocessed.fastq.gz
420.91 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A19_S183_L006_R1_001_preprocessed_downsampled.fastq.gz
51.42 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.11 kB
ELS443A19_S183_L006_R1_001.fastq.gz
566.34 MB
ELS443A19_S183_L006_R1_001_fastqc.zip
435.68 kB
Samtools idxstats
idxstat_report.txt
1.37 kB
STAR
ELS443A19_S183_L006_R1_001_preprocessed.bam.bai
2.10 MB
ELS443A19_S183_L006_R1_001_preprocessed.bam
68.57 MB
ELS443A19_S183_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
379.48 MB
ELS443A19_S183_L006_R1_001_preprocessed.bw
1.78 MB
ELS443A19_S183_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A19_S183_L006_R1_001_preprocessed_SJ.out.tab
687.25 kB
STAR
ELS443A19_S183_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.42 MB
ELS443A19_S183_L006_R1_001_preprocessed_downsampled_SJ.out.tab
4.43 kB
ELS443A19_S183_L006_R1_001_preprocessed_downsampled.bam.bai
1.24 kB
ELS443A19_S183_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A19_S183_L006_R1_001_preprocessed_downsampled.bam
776.93 kB
STAR
ELS443A19_S183_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.07 MB
ELS443A19_S183_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A19_S183_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A19_S183_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A19_S183_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
featureCounts
ELS443A19_S183_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
results
Directory
featureCounts_rc.txt.summary
356 B
ELS443A19_S183_L006_R1_001_preprocessed_fpkm.tab.gz
250.79 kB
ELS443A19_S183_L006_R1_001_preprocessed_tpm.tab.gz
251.18 kB
ELS443A19_S183_L006_R1_001_preprocessed_cpm.tab.gz
179.97 kB
ELS443A19_S183_L006_R1_001_preprocessed_expressions.txt.gz
672.60 kB
ELS443A19_S183_L006_R1_001_preprocessed_rc.tab.gz
196.64 kB

WT Day 15_B2m

Samtools idxstats
idxstat_report.txt
1.40 kB
STAR
ELS443A25_S190_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
893.69 MB
ELS443A25_S190_L006_R1_001_preprocessed.bam
205.70 MB
ELS443A25_S190_L006_R1_001_preprocessed.bam.bai
2.41 MB
ELS443A25_S190_L006_R1_001_preprocessed_SJ.out.tab
1.01 MB
ELS443A25_S190_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A25_S190_L006_R1_001_preprocessed.bw
3.19 MB
STAR
ELS443A25_S190_L006_R1_001_preprocessed_downsampled.bam
1.27 MB
ELS443A25_S190_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.91 MB
ELS443A25_S190_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A25_S190_L006_R1_001_preprocessed_downsampled.bam.bai
1.42 kB
ELS443A25_S190_L006_R1_001_preprocessed_downsampled_SJ.out.tab
8.09 kB
Subsample FASTQ (single-end)
ELS443A25_S190_L006_R1_001_preprocessed_downsampled.fastq.gz
52.41 MB
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
fastqc
Directory
ELS443A25_S190_L006_R1_001_statistics.txt.gz
720 B
ELS443A25_S190_L006_R1_001_preprocessed.fastq.gz
1.01 GB
FASTQ file (single-end)
ELS443A25_S190_L006_R1_001.fastq.gz
1.35 GB
fastqc
Directory
ELS443A25_S190_L006_R1_001_fastqc.zip
440.90 kB
stderr.txt
1.11 kB
STAR
ELS443A25_S190_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.05 MB
ELS443A25_S190_L006_R1_001_preprocessed_downsampled.bam
783 B
ELS443A25_S190_L006_R1_001_preprocessed_downsampled.bam.bai
128 B
ELS443A25_S190_L006_R1_001_preprocessed_downsampled_SJ.out.tab
41 B
ELS443A25_S190_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
featureCounts
ELS443A25_S190_L006_R1_001_preprocessed_fpkm.tab.gz
277.41 kB
featureCounts_rc.txt.summary
358 B
ELS443A25_S190_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
results
Directory
ELS443A25_S190_L006_R1_001_preprocessed_expressions.txt.gz
755.92 kB
ELS443A25_S190_L006_R1_001_preprocessed_rc.tab.gz
204.96 kB
ELS443A25_S190_L006_R1_001_preprocessed_tpm.tab.gz
277.46 kB
ELS443A25_S190_L006_R1_001_preprocessed_cpm.tab.gz
198.37 kB

WT Day 15_Ank3 RSX

STAR
ELS443A30_S196_L006_R1_001_preprocessed_downsampled.bam.bai
1.26 kB
ELS443A30_S196_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.41 MB
ELS443A30_S196_L006_R1_001_preprocessed_downsampled.bam
811.75 kB
ELS443A30_S196_L006_R1_001_preprocessed_downsampled_SJ.out.tab
7.20 kB
ELS443A30_S196_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A30_S196_L006_R1_001_preprocessed_downsampled.fastq.gz
51.45 MB
featureCounts
featureCounts_rc.txt.summary
358 B
results
Directory
ELS443A30_S196_L006_R1_001_preprocessed_rc.tab.gz
202.23 kB
ELS443A30_S196_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A30_S196_L006_R1_001_preprocessed_fpkm.tab.gz
268.39 kB
ELS443A30_S196_L006_R1_001_preprocessed_tpm.tab.gz
268.35 kB
ELS443A30_S196_L006_R1_001_preprocessed_expressions.txt.gz
727.27 kB
ELS443A30_S196_L006_R1_001_preprocessed_cpm.tab.gz
191.97 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.11 kB
ELS443A30_S196_L006_R1_001.fastq.gz
1.26 GB
ELS443A30_S196_L006_R1_001_fastqc.zip
448.00 kB
Samtools idxstats
idxstat_report.txt
1.39 kB
BBDuk (single-end)
ELS443A30_S196_L006_R1_001_preprocessed.fastq.gz
961.95 MB
fastqc
Directory
ELS443A30_S196_L006_R1_001_statistics.txt.gz
797 B
STAR
ELS443A30_S196_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
863.11 MB
ELS443A30_S196_L006_R1_001_preprocessed.bam.bai
2.30 MB
ELS443A30_S196_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A30_S196_L006_R1_001_preprocessed.bam
151.29 MB
ELS443A30_S196_L006_R1_001_preprocessed_SJ.out.tab
910.35 kB
ELS443A30_S196_L006_R1_001_preprocessed.bw
2.74 MB
STAR
ELS443A30_S196_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.09 MB
ELS443A30_S196_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A30_S196_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A30_S196_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A30_S196_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB

Ank3 D4 Day 10_Actb

Samtools idxstats
idxstat_report.txt
1.34 kB
FASTQ file (single-end)
ELS443A4_S201_L006_R1_001.fastq.gz
94.09 MB
ELS443A4_S201_L006_R1_001_fastqc.zip
431.23 kB
stderr.txt
1.09 kB
fastqc
Directory
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A4_S201_L006_R1_001_preprocessed_downsampled.fastq.gz
49.48 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
featureCounts
results
Directory
ELS443A4_S201_L006_R1_001_preprocessed_tpm.tab.gz
228.75 kB
featureCounts_rc.txt.summary
352 B
ELS443A4_S201_L006_R1_001_preprocessed_rc.tab.gz
188.50 kB
ELS443A4_S201_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A4_S201_L006_R1_001_preprocessed_fpkm.tab.gz
228.28 kB
ELS443A4_S201_L006_R1_001_preprocessed_expressions.txt.gz
599.42 kB
ELS443A4_S201_L006_R1_001_preprocessed_cpm.tab.gz
163.71 kB
STAR
ELS443A4_S201_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.28 MB
ELS443A4_S201_L006_R1_001_preprocessed_downsampled.bam.bai
1.45 kB
ELS443A4_S201_L006_R1_001_preprocessed_downsampled.bam
1.03 MB
ELS443A4_S201_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A4_S201_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.95 kB
STAR
ELS443A4_S201_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.15 MB
ELS443A4_S201_L006_R1_001_preprocessed_downsampled.bam.bai
200 B
ELS443A4_S201_L006_R1_001_preprocessed_downsampled.bam
716 B
ELS443A4_S201_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A4_S201_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
BBDuk (single-end)
fastqc
Directory
ELS443A4_S201_L006_R1_001_preprocessed.fastq.gz
70.33 MB
ELS443A4_S201_L006_R1_001_statistics.txt.gz
496 B
STAR
ELS443A4_S201_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A4_S201_L006_R1_001_preprocessed.bam.bai
1.70 MB
ELS443A4_S201_L006_R1_001_preprocessed.bam
14.62 MB
ELS443A4_S201_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
62.82 MB
ELS443A4_S201_L006_R1_001_preprocessed_SJ.out.tab
413.94 kB
ELS443A4_S201_L006_R1_001_preprocessed.bw
776.41 kB

Ank3 D4 Day 15_Ank3 X19

Samtools idxstats
idxstat_report.txt
1.35 kB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
featureCounts
ELS443A8_S205_L006_R1_001_preprocessed_fpkm.tab.gz
228.96 kB
results
Directory
ELS443A8_S205_L006_R1_001_preprocessed_rc.tab.gz
188.89 kB
ELS443A8_S205_L006_R1_001_preprocessed_tpm.tab.gz
229.17 kB
featureCounts_rc.txt.summary
352 B
ELS443A8_S205_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A8_S205_L006_R1_001_preprocessed_cpm.tab.gz
164.22 kB
ELS443A8_S205_L006_R1_001_preprocessed_expressions.txt.gz
602.20 kB
Subsample FASTQ (single-end)
ELS443A8_S205_L006_R1_001_preprocessed_downsampled.fastq.gz
49.74 MB
fastqc
Directory
STAR
ELS443A8_S205_L006_R1_001_preprocessed_downsampled.bam.bai
1.29 kB
ELS443A8_S205_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A8_S205_L006_R1_001_preprocessed_downsampled.bam
847.51 kB
ELS443A8_S205_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.70 MB
ELS443A8_S205_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.25 kB
STAR
ELS443A8_S205_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.39 MB
ELS443A8_S205_L006_R1_001_preprocessed_downsampled.bam.bai
128 B
ELS443A8_S205_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A8_S205_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A8_S205_L006_R1_001_preprocessed_downsampled.bam
658 B
FASTQ file (single-end)
stderr.txt
1.09 kB
fastqc
Directory
ELS443A8_S205_L006_R1_001.fastq.gz
98.18 MB
ELS443A8_S205_L006_R1_001_fastqc.zip
425.57 kB
BBDuk (single-end)
fastqc
Directory
ELS443A8_S205_L006_R1_001_preprocessed.fastq.gz
73.42 MB
ELS443A8_S205_L006_R1_001_statistics.txt.gz
532 B
STAR
ELS443A8_S205_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
65.62 MB
ELS443A8_S205_L006_R1_001_preprocessed.bam.bai
1.72 MB
ELS443A8_S205_L006_R1_001_preprocessed_SJ.out.tab
396.12 kB
ELS443A8_S205_L006_R1_001_preprocessed.bam
14.52 MB
ELS443A8_S205_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A8_S205_L006_R1_001_preprocessed.bw
781.81 kB

Ank3 D4 Day 15_Ank3 X2

featureCounts
results
Directory
ELS443A7_S204_L006_R1_001_preprocessed_fpkm.tab.gz
224.25 kB
featureCounts_rc.txt.summary
352 B
ELS443A7_S204_L006_R1_001_preprocessed_rc.tab.gz
188.10 kB
ELS443A7_S204_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A7_S204_L006_R1_001_preprocessed_tpm.tab.gz
224.82 kB
ELS443A7_S204_L006_R1_001_preprocessed_cpm.tab.gz
163.00 kB
ELS443A7_S204_L006_R1_001_preprocessed_expressions.txt.gz
591.15 kB
STAR
ELS443A7_S204_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
61.96 MB
ELS443A7_S204_L006_R1_001_preprocessed.bam.bai
1.69 MB
ELS443A7_S204_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A7_S204_L006_R1_001_preprocessed.bam
13.65 MB
ELS443A7_S204_L006_R1_001_preprocessed_SJ.out.tab
369.47 kB
ELS443A7_S204_L006_R1_001_preprocessed.bw
717.82 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A7_S204_L006_R1_001_preprocessed_downsampled.fastq.gz
49.37 MB
STAR
ELS443A7_S204_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.26 MB
ELS443A7_S204_L006_R1_001_preprocessed_downsampled.bam
939.01 kB
ELS443A7_S204_L006_R1_001_preprocessed_downsampled.bam.bai
1.41 kB
ELS443A7_S204_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.59 kB
ELS443A7_S204_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ELS443A7_S204_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A7_S204_L006_R1_001_preprocessed_downsampled.bam
709 B
ELS443A7_S204_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A7_S204_L006_R1_001_preprocessed_downsampled.bam.bai
128 B
ELS443A7_S204_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.03 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ELS443A7_S204_L006_R1_001.fastq.gz
92.04 MB
ELS443A7_S204_L006_R1_001_fastqc.zip
425.70 kB
Samtools idxstats
idxstat_report.txt
1.35 kB
BBDuk (single-end)
fastqc
Directory
ELS443A7_S204_L006_R1_001_preprocessed.fastq.gz
69.15 MB
ELS443A7_S204_L006_R1_001_statistics.txt.gz
506 B

WT Day 10_Ank3 RSX

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ELS443A24_S189_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.91 MB
ELS443A24_S189_L006_R1_001_preprocessed_downsampled.bam.bai
128 B
ELS443A24_S189_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A24_S189_L006_R1_001_preprocessed_downsampled.bam
723 B
ELS443A24_S189_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A24_S189_L006_R1_001_preprocessed_downsampled.fastq.gz
52.25 MB
FASTQ file (single-end)
fastqc
Directory
ELS443A24_S189_L006_R1_001_fastqc.zip
441.60 kB
stderr.txt
1.11 kB
ELS443A24_S189_L006_R1_001.fastq.gz
852.13 MB
Samtools idxstats
idxstat_report.txt
1.38 kB
BBDuk (single-end)
fastqc
Directory
ELS443A24_S189_L006_R1_001_statistics.txt.gz
700 B
ELS443A24_S189_L006_R1_001_preprocessed.fastq.gz
633.18 MB
STAR
ELS443A24_S189_L006_R1_001_preprocessed.bam
99.42 MB
ELS443A24_S189_L006_R1_001_preprocessed.bam.bai
2.18 MB
ELS443A24_S189_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A24_S189_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
571.38 MB
ELS443A24_S189_L006_R1_001_preprocessed_SJ.out.tab
734.80 kB
ELS443A24_S189_L006_R1_001_preprocessed.bw
2.12 MB
STAR
ELS443A24_S189_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.34 MB
ELS443A24_S189_L006_R1_001_preprocessed_downsampled.bam.bai
1.13 kB
ELS443A24_S189_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A24_S189_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.08 kB
ELS443A24_S189_L006_R1_001_preprocessed_downsampled.bam
675.38 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
357 B
ELS443A24_S189_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A24_S189_L006_R1_001_preprocessed_rc.tab.gz
198.75 kB
ELS443A24_S189_L006_R1_001_preprocessed_expressions.txt.gz
692.09 kB
ELS443A24_S189_L006_R1_001_preprocessed_tpm.tab.gz
256.74 kB
ELS443A24_S189_L006_R1_001_preprocessed_cpm.tab.gz
185.35 kB
ELS443A24_S189_L006_R1_001_preprocessed_fpkm.tab.gz
256.32 kB

WT Day 15_Ank3 X2

STAR
ELS443A31_S197_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.01 MB
ELS443A31_S197_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A31_S197_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A31_S197_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A31_S197_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
1.39 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
ELS443A31_S197_L006_R1_001_preprocessed_downsampled.fastq.gz
52.36 MB
fastqc
Directory
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ELS443A31_S197_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A31_S197_L006_R1_001_preprocessed_rc.tab.gz
201.93 kB
ELS443A31_S197_L006_R1_001_preprocessed_fpkm.tab.gz
267.00 kB
ELS443A31_S197_L006_R1_001_preprocessed_tpm.tab.gz
267.06 kB
ELS443A31_S197_L006_R1_001_preprocessed_expressions.txt.gz
725.52 kB
ELS443A31_S197_L006_R1_001_preprocessed_cpm.tab.gz
192.50 kB
STAR
ELS443A31_S197_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A31_S197_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.24 MB
ELS443A31_S197_L006_R1_001_preprocessed_downsampled.bam
872.91 kB
ELS443A31_S197_L006_R1_001_preprocessed_downsampled_SJ.out.tab
6.00 kB
ELS443A31_S197_L006_R1_001_preprocessed_downsampled.bam.bai
1.16 kB
FASTQ file (single-end)
fastqc
Directory
ELS443A31_S197_L006_R1_001.fastq.gz
1.30 GB
stderr.txt
1.11 kB
ELS443A31_S197_L006_R1_001_fastqc.zip
449.07 kB
BBDuk (single-end)
fastqc
Directory
ELS443A31_S197_L006_R1_001_statistics.txt.gz
734 B
ELS443A31_S197_L006_R1_001_preprocessed.fastq.gz
997.73 MB
STAR
ELS443A31_S197_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
896.45 MB
ELS443A31_S197_L006_R1_001_preprocessed.bam.bai
2.31 MB
ELS443A31_S197_L006_R1_001_preprocessed.bam
155.60 MB
ELS443A31_S197_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A31_S197_L006_R1_001_preprocessed_SJ.out.tab
924.38 kB
ELS443A31_S197_L006_R1_001_preprocessed.bw
2.78 MB

Ank3 D4 Day 10_Ank3 RSX

STAR
ELS443A1_S173_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A1_S173_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.68 MB
ELS443A1_S173_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A1_S173_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A1_S173_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
FASTQ file (single-end)
fastqc
Directory
ELS443A1_S173_L006_R1_001.fastq.gz
63.98 MB
stderr.txt
1.09 kB
ELS443A1_S173_L006_R1_001_fastqc.zip
433.60 kB
Samtools idxstats
idxstat_report.txt
1.34 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
ELS443A1_S173_L006_R1_001_preprocessed_downsampled.fastq.gz
47.01 MB
fastqc
Directory
BBDuk (single-end)
fastqc
Directory
ELS443A1_S173_L006_R1_001_preprocessed.fastq.gz
47.37 MB
ELS443A1_S173_L006_R1_001_statistics.txt.gz
490 B
STAR
ELS443A1_S173_L006_R1_001_preprocessed.bam
9.53 MB
ELS443A1_S173_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
42.62 MB
ELS443A1_S173_L006_R1_001_preprocessed.bw
594.06 kB
ELS443A1_S173_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A1_S173_L006_R1_001_preprocessed.bam.bai
1.66 MB
ELS443A1_S173_L006_R1_001_preprocessed_SJ.out.tab
303.95 kB
STAR
ELS443A1_S173_L006_R1_001_preprocessed_downsampled.bam.bai
1.41 kB
ELS443A1_S173_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.99 MB
ELS443A1_S173_L006_R1_001_preprocessed_downsampled.bam
906.75 kB
ELS443A1_S173_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.75 kB
ELS443A1_S173_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
351 B
ELS443A1_S173_L006_R1_001_preprocessed_fpkm.tab.gz
217.95 kB
ELS443A1_S173_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A1_S173_L006_R1_001_preprocessed_rc.tab.gz
186.33 kB
ELS443A1_S173_L006_R1_001_preprocessed_tpm.tab.gz
218.55 kB
ELS443A1_S173_L006_R1_001_preprocessed_cpm.tab.gz
160.44 kB
ELS443A1_S173_L006_R1_001_preprocessed_expressions.txt.gz
574.57 kB

Ank3 D4 Day 10_Ank3 X19

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
1.34 kB
BBDuk (single-end)
fastqc
Directory
ELS443A3_S195_L006_R1_001_preprocessed.fastq.gz
47.42 MB
ELS443A3_S195_L006_R1_001_statistics.txt.gz
499 B
featureCounts
ELS443A3_S195_L006_R1_001_preprocessed_rc.tab.gz
186.99 kB
featureCounts_rc.txt.summary
351 B
results
Directory
ELS443A3_S195_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A3_S195_L006_R1_001_preprocessed_tpm.tab.gz
223.15 kB
ELS443A3_S195_L006_R1_001_preprocessed_cpm.tab.gz
161.15 kB
ELS443A3_S195_L006_R1_001_preprocessed_expressions.txt.gz
584.78 kB
ELS443A3_S195_L006_R1_001_preprocessed_fpkm.tab.gz
222.55 kB
STAR
ELS443A3_S195_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.39 MB
ELS443A3_S195_L006_R1_001_preprocessed_downsampled.bam.bai
1.29 kB
ELS443A3_S195_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A3_S195_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.33 kB
ELS443A3_S195_L006_R1_001_preprocessed_downsampled.bam
880.30 kB
STAR
ELS443A3_S195_L006_R1_001_preprocessed_downsampled.bam
646 B
ELS443A3_S195_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A3_S195_L006_R1_001_preprocessed_downsampled.bam.bai
200 B
ELS443A3_S195_L006_R1_001_preprocessed_downsampled_SJ.out.tab
80 B
ELS443A3_S195_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.08 MB
FASTQ file (single-end)
ELS443A3_S195_L006_R1_001.fastq.gz
63.59 MB
fastqc
Directory
stderr.txt
1.09 kB
ELS443A3_S195_L006_R1_001_fastqc.zip
432.90 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A3_S195_L006_R1_001_preprocessed_downsampled.fastq.gz
47.42 MB
STAR
ELS443A3_S195_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
42.26 MB
ELS443A3_S195_L006_R1_001_preprocessed.bam.bai
1.67 MB
ELS443A3_S195_L006_R1_001_preprocessed.bam
9.96 MB
ELS443A3_S195_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A3_S195_L006_R1_001_preprocessed_SJ.out.tab
324.16 kB
ELS443A3_S195_L006_R1_001_preprocessed.bw
622.64 kB

Ank3 D4 Day 15_Actb

STAR
ELS443A9_S206_L006_R1_001_preprocessed_downsampled.bam.bai
1.02 kB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.97 MB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled.bam
672.81 kB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled_SJ.out.tab
4.35 kB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
STAR
ELS443A9_S206_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
80.86 MB
ELS443A9_S206_L006_R1_001_preprocessed.bam
16.23 MB
ELS443A9_S206_L006_R1_001_preprocessed.bw
744.49 kB
ELS443A9_S206_L006_R1_001_preprocessed_SJ.out.tab
368.43 kB
ELS443A9_S206_L006_R1_001_preprocessed.bam.bai
1.71 MB
ELS443A9_S206_L006_R1_001_preprocessed_stats.txt
1.80 kB
Samtools idxstats
idxstat_report.txt
1.35 kB
STAR
ELS443A9_S206_L006_R1_001_preprocessed_downsampled.bam.bai
128 B
ELS443A9_S206_L006_R1_001_preprocessed_downsampled.bam
623 B
ELS443A9_S206_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.54 MB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A9_S206_L006_R1_001_preprocessed_downsampled_SJ.out.tab
41 B
featureCounts
results
Directory
ELS443A9_S206_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
featureCounts_rc.txt.summary
353 B
ELS443A9_S206_L006_R1_001_preprocessed_fpkm.tab.gz
223.09 kB
ELS443A9_S206_L006_R1_001_preprocessed_tpm.tab.gz
223.49 kB
ELS443A9_S206_L006_R1_001_preprocessed_expressions.txt.gz
591.38 kB
ELS443A9_S206_L006_R1_001_preprocessed_rc.tab.gz
188.58 kB
ELS443A9_S206_L006_R1_001_preprocessed_cpm.tab.gz
163.98 kB
FASTQ file (single-end)
fastqc
Directory
ELS443A9_S206_L006_R1_001.fastq.gz
119.27 MB
stderr.txt
1.09 kB
ELS443A9_S206_L006_R1_001_fastqc.zip
426.31 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A9_S206_L006_R1_001_preprocessed_downsampled.fastq.gz
50.89 MB
BBDuk (single-end)
fastqc
Directory
ELS443A9_S206_L006_R1_001_statistics.txt.gz
493 B
ELS443A9_S206_L006_R1_001_preprocessed.fastq.gz
89.86 MB

Ank3 D4 Day 15_B2m

STAR
ELS443A10_S174_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.13 MB
ELS443A10_S174_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A10_S174_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A10_S174_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A10_S174_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
Samtools idxstats
idxstat_report.txt
1.36 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
354 B
ELS443A10_S174_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A10_S174_L006_R1_001_preprocessed_rc.tab.gz
192.70 kB
ELS443A10_S174_L006_R1_001_preprocessed_expressions.txt.gz
644.15 kB
ELS443A10_S174_L006_R1_001_preprocessed_cpm.tab.gz
170.13 kB
ELS443A10_S174_L006_R1_001_preprocessed_fpkm.tab.gz
243.90 kB
ELS443A10_S174_L006_R1_001_preprocessed_tpm.tab.gz
244.23 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ELS443A10_S174_L006_R1_001_preprocessed.bam
28.06 MB
ELS443A10_S174_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
111.76 MB
ELS443A10_S174_L006_R1_001_preprocessed.bam.bai
1.87 MB
ELS443A10_S174_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A10_S174_L006_R1_001_preprocessed_SJ.out.tab
558.27 kB
ELS443A10_S174_L006_R1_001_preprocessed.bw
1.13 MB
BBDuk (single-end)
fastqc
Directory
ELS443A10_S174_L006_R1_001_statistics.txt.gz
512 B
ELS443A10_S174_L006_R1_001_preprocessed.fastq.gz
127.73 MB
FASTQ file (single-end)
fastqc
Directory
ELS443A10_S174_L006_R1_001_fastqc.zip
423.37 kB
stderr.txt
1.11 kB
ELS443A10_S174_L006_R1_001.fastq.gz
169.79 MB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A10_S174_L006_R1_001_preprocessed_downsampled.fastq.gz
51.48 MB
STAR
ELS443A10_S174_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.24 MB
ELS443A10_S174_L006_R1_001_preprocessed_downsampled.bam.bai
1.30 kB
ELS443A10_S174_L006_R1_001_preprocessed_downsampled.bam
1.01 MB
ELS443A10_S174_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A10_S174_L006_R1_001_preprocessed_downsampled_SJ.out.tab
6.75 kB

Ank3 E11 Day 10_Actb

FASTQ file (single-end)
fastqc
Directory
ELS443A14_ELS443A22.merge_fastqc.zip
427.05 kB
stderr.txt
1.14 kB
ELS443A14_ELS443A22.merge.fastq.gz
385.73 MB
STAR
ELS443A14_ELS443A22.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.34 MB
ELS443A14_ELS443A22.merge_preprocessed_downsampled_SJ.out.tab
5.01 kB
ELS443A14_ELS443A22.merge_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A14_ELS443A22.merge_preprocessed_downsampled.bam.bai
1.30 kB
ELS443A14_ELS443A22.merge_preprocessed_downsampled.bam
920.54 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
ELS443A14_ELS443A22.merge_preprocessed_downsampled.fastq.gz
51.67 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
1.37 kB
BBDuk (single-end)
fastqc
Directory
ELS443A14_ELS443A22.merge_preprocessed.fastq.gz
286.34 MB
ELS443A14_ELS443A22.merge_statistics.txt.gz
719 B
STAR
ELS443A14_ELS443A22.merge_preprocessed_unmapped.out.mate1.fastq.gz
257.49 MB
ELS443A14_ELS443A22.merge_preprocessed_stats.txt
1.81 kB
ELS443A14_ELS443A22.merge_preprocessed_SJ.out.tab
681.71 kB
ELS443A14_ELS443A22.merge_preprocessed.bw
1.60 MB
ELS443A14_ELS443A22.merge_preprocessed.bam.bai
2.02 MB
ELS443A14_ELS443A22.merge_preprocessed.bam
49.62 MB
STAR
ELS443A14_ELS443A22.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.13 MB
ELS443A14_ELS443A22.merge_preprocessed_downsampled.bam.bai
128 B
ELS443A14_ELS443A22.merge_preprocessed_downsampled.bam
625 B
ELS443A14_ELS443A22.merge_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A14_ELS443A22.merge_preprocessed_downsampled_stats.txt
1.77 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
354 B
ELS443A14_ELS443A22.merge_preprocessed_rc.tab.gz
195.20 kB
ELS443A14_ELS443A22.merge_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A14_ELS443A22.merge_preprocessed_tpm.tab.gz
250.36 kB
ELS443A14_ELS443A22.merge_preprocessed_fpkm.tab.gz
250.23 kB
ELS443A14_ELS443A22.merge_preprocessed_expressions.txt.gz
665.80 kB
ELS443A14_ELS443A22.merge_preprocessed_cpm.tab.gz
176.03 kB

Ank3 E11 Day 10_Ank3 RSX

STAR
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.bam
999.55 kB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.83 MB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.bam.bai
1.38 kB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.86 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.68 MB
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.bam
470 B
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A11_S175_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
BBDuk (single-end)
fastqc
Directory
ELS443A11_S175_L006_R1_001_statistics.txt.gz
576 B
ELS443A11_S175_L006_R1_001_preprocessed.fastq.gz
134.83 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.11 kB
ELS443A11_S175_L006_R1_001.fastq.gz
179.86 MB
ELS443A11_S175_L006_R1_001_fastqc.zip
419.90 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A11_S175_L006_R1_001_preprocessed_downsampled.fastq.gz
51.03 MB
Samtools idxstats
idxstat_report.txt
1.36 kB
STAR
ELS443A11_S175_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
120.21 MB
ELS443A11_S175_L006_R1_001_preprocessed_SJ.out.tab
529.53 kB
ELS443A11_S175_L006_R1_001_preprocessed.bw
1.15 MB
ELS443A11_S175_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A11_S175_L006_R1_001_preprocessed.bam
26.29 MB
ELS443A11_S175_L006_R1_001_preprocessed.bam.bai
1.93 MB
featureCounts
results
Directory
ELS443A11_S175_L006_R1_001_preprocessed_fpkm.tab.gz
240.65 kB
ELS443A11_S175_L006_R1_001_preprocessed_rc.tab.gz
191.80 kB
ELS443A11_S175_L006_R1_001_preprocessed_tpm.tab.gz
240.70 kB
featureCounts_rc.txt.summary
354 B
ELS443A11_S175_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A11_S175_L006_R1_001_preprocessed_cpm.tab.gz
169.18 kB
ELS443A11_S175_L006_R1_001_preprocessed_expressions.txt.gz
633.96 kB

Ank3 E11 Day 10_Ank3 X19

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
FASTQ file (single-end)
ELS443A13_ELS443A21.merge.fastq.gz
339.83 MB
fastqc
Directory
ELS443A13_ELS443A21.merge_fastqc.zip
423.82 kB
stderr.txt
1.09 kB
STAR
ELS443A13_ELS443A21.merge_preprocessed_downsampled.bam.bai
1.21 kB
ELS443A13_ELS443A21.merge_preprocessed_downsampled.bam
1014.56 kB
ELS443A13_ELS443A21.merge_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A13_ELS443A21.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.28 MB
ELS443A13_ELS443A21.merge_preprocessed_downsampled_SJ.out.tab
5.35 kB
BBDuk (single-end)
fastqc
Directory
ELS443A13_ELS443A21.merge_statistics.txt.gz
683 B
ELS443A13_ELS443A21.merge_preprocessed.fastq.gz
254.13 MB
STAR
ELS443A13_ELS443A21.merge_preprocessed_stats.txt
1.80 kB
ELS443A13_ELS443A21.merge_preprocessed.bam
48.20 MB
ELS443A13_ELS443A21.merge_preprocessed_SJ.out.tab
621.48 kB
ELS443A13_ELS443A21.merge_preprocessed.bam.bai
2.12 MB
ELS443A13_ELS443A21.merge_preprocessed_unmapped.out.mate1.fastq.gz
224.49 MB
ELS443A13_ELS443A21.merge_preprocessed.bw
1.57 MB
Samtools idxstats
idxstat_report.txt
1.37 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A13_ELS443A21.merge_preprocessed_downsampled.fastq.gz
52.73 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
355 B
ELS443A13_ELS443A21.merge_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A13_ELS443A21.merge_preprocessed_fpkm.tab.gz
249.88 kB
ELS443A13_ELS443A21.merge_preprocessed_rc.tab.gz
195.18 kB
ELS443A13_ELS443A21.merge_preprocessed_tpm.tab.gz
250.17 kB
ELS443A13_ELS443A21.merge_preprocessed_cpm.tab.gz
175.90 kB
ELS443A13_ELS443A21.merge_preprocessed_expressions.txt.gz
665.36 kB
STAR
ELS443A13_ELS443A21.merge_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.18 MB
ELS443A13_ELS443A21.merge_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A13_ELS443A21.merge_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A13_ELS443A21.merge_preprocessed_downsampled.bam.bai
56 B
ELS443A13_ELS443A21.merge_preprocessed_downsampled.bam
470 B

Ank3 E11 Day 15_Ank3 X19

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
fastqc
Directory
ELS443A18_S182_L006_R1_001_statistics.txt.gz
680 B
ELS443A18_S182_L006_R1_001_preprocessed.fastq.gz
518.53 MB
Samtools idxstats
idxstat_report.txt
1.38 kB
FASTQ file (single-end)
fastqc
Directory
ELS443A18_S182_L006_R1_001.fastq.gz
685.43 MB
stderr.txt
1.11 kB
ELS443A18_S182_L006_R1_001_fastqc.zip
441.74 kB
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A18_S182_L006_R1_001_preprocessed_downsampled.fastq.gz
52.51 MB
STAR
ELS443A18_S182_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
458.52 MB
ELS443A18_S182_L006_R1_001_preprocessed.bam.bai
2.13 MB
ELS443A18_S182_L006_R1_001_preprocessed.bam
96.12 MB
ELS443A18_S182_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A18_S182_L006_R1_001_preprocessed_SJ.out.tab
707.25 kB
ELS443A18_S182_L006_R1_001_preprocessed.bw
1.86 MB
STAR
ELS443A18_S182_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.49 MB
ELS443A18_S182_L006_R1_001_preprocessed_downsampled.bam
751.31 kB
ELS443A18_S182_L006_R1_001_preprocessed_downsampled.bam.bai
1.05 kB
ELS443A18_S182_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A18_S182_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.53 kB
STAR
ELS443A18_S182_L006_R1_001_preprocessed_downsampled.bam
669 B
ELS443A18_S182_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.15 MB
ELS443A18_S182_L006_R1_001_preprocessed_downsampled.bam.bai
128 B
ELS443A18_S182_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A18_S182_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
357 B
ELS443A18_S182_L006_R1_001_preprocessed_cpm.tab.gz
184.04 kB
ELS443A18_S182_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
ELS443A18_S182_L006_R1_001_preprocessed_tpm.tab.gz
256.23 kB
ELS443A18_S182_L006_R1_001_preprocessed_fpkm.tab.gz
256.23 kB
ELS443A18_S182_L006_R1_001_preprocessed_rc.tab.gz
198.78 kB
ELS443A18_S182_L006_R1_001_preprocessed_expressions.txt.gz
691.48 kB

Ank3 E11 Day 15_Ank3 X2

Subsample FASTQ (single-end)
fastqc
Directory
ELS443A17_S181_L006_R1_001_preprocessed_downsampled.fastq.gz
50.86 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
354 B
ELS443A17_S181_L006_R1_001_preprocessed_fpkm.tab.gz
228.39 kB
ELS443A17_S181_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.50 MB
ELS443A17_S181_L006_R1_001_preprocessed_tpm.tab.gz
228.59 kB
ELS443A17_S181_L006_R1_001_preprocessed_rc.tab.gz
189.26 kB
ELS443A17_S181_L006_R1_001_preprocessed_expressions.txt.gz
602.67 kB
ELS443A17_S181_L006_R1_001_preprocessed_cpm.tab.gz
164.92 kB
STAR
ELS443A17_S181_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.50 MB
ELS443A17_S181_L006_R1_001_preprocessed_downsampled.bam.bai
56 B
ELS443A17_S181_L006_R1_001_preprocessed_downsampled_SJ.out.tab
0 B
ELS443A17_S181_L006_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
ELS443A17_S181_L006_R1_001_preprocessed_downsampled.bam
470 B
FASTQ file (single-end)
fastqc
Directory
ELS443A17_S181_L006_R1_001.fastq.gz
129.62 MB
stderr.txt
1.11 kB
ELS443A17_S181_L006_R1_001_fastqc.zip
428.51 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
1.35 kB
BBDuk (single-end)
fastqc
Directory
ELS443A17_S181_L006_R1_001_preprocessed.fastq.gz
96.86 MB
ELS443A17_S181_L006_R1_001_statistics.txt.gz
629 B
STAR
ELS443A17_S181_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
87.42 MB
ELS443A17_S181_L006_R1_001_preprocessed.bam.bai
1.79 MB
ELS443A17_S181_L006_R1_001_preprocessed_stats.txt
1.80 kB
ELS443A17_S181_L006_R1_001_preprocessed.bam
17.42 MB
ELS443A17_S181_L006_R1_001_preprocessed_SJ.out.tab
407.04 kB
ELS443A17_S181_L006_R1_001_preprocessed.bw
876.46 kB
STAR
ELS443A17_S181_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.85 MB
ELS443A17_S181_L006_R1_001_preprocessed_downsampled.bam.bai
1.02 kB
ELS443A17_S181_L006_R1_001_preprocessed_downsampled.bam
770.10 kB
ELS443A17_S181_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A17_S181_L006_R1_001_preprocessed_downsampled_SJ.out.tab
5.09 kB

Ank3 E11 Day 15_B2m

featureCounts
ELS443A20_S185_L006_R1_001_preprocessed_tpm.tab.gz
259.77 kB
ELS443A20_S185_L006_R1_001_preprocessed_rc.tab.gz
199.42 kB
ELS443A20_S185_L006_R1_001_preprocessed_fpkm.tab.gz
259.57 kB
ELS443A20_S185_L006_R1_001_preprocessed_featureCounts_rc.txt.gz
3.51 MB
featureCounts_rc.txt.summary
357 B
ELS443A20_S185_L006_R1_001_preprocessed_expressions.txt.gz
699.07 kB
ELS443A20_S185_L006_R1_001_preprocessed_cpm.tab.gz
185.52 kB
results
Directory
Subsample FASTQ (single-end)
fastqc
Directory
ELS443A20_S185_L006_R1_001_preprocessed_downsampled.fastq.gz
52.49 MB
BBDuk (single-end)
fastqc
Directory
ELS443A20_S185_L006_R1_001_preprocessed.fastq.gz
541.71 MB
ELS443A20_S185_L006_R1_001_statistics.txt.gz
605 B
Samtools idxstats
idxstat_report.txt
1.38 kB
FASTQ file (single-end)
ELS443A20_S185_L006_R1_001.fastq.gz
723.79 MB
fastqc
Directory
stderr.txt
1.11 kB
ELS443A20_S185_L006_R1_001_fastqc.zip
440.89 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ELS443A20_S185_L006_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
478.30 MB
ELS443A20_S185_L006_R1_001_preprocessed.bam
99.47 MB
ELS443A20_S185_L006_R1_001_preprocessed.bam.bai
2.22 MB
ELS443A20_S185_L006_R1_001_preprocessed_stats.txt
1.81 kB
ELS443A20_S185_L006_R1_001_preprocessed.bw
2.06 MB
ELS443A20_S185_L006_R1_001_preprocessed_SJ.out.tab
733.79 kB
STAR
ELS443A20_S185_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.35 MB
ELS443A20_S185_L006_R1_001_preprocessed_downsampled.bam.bai
1.15 kB
ELS443A20_S185_L006_R1_001_preprocessed_downsampled.bam
897.23 kB
ELS443A20_S185_L006_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ELS443A20_S185_L006_R1_001_preprocessed_downsampled_SJ.out.tab
7.34 kB
STAR
ELS443A20_S185_L006_R1_001_preprocessed_downsampled_stats.txt
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ELS443A20_S185_L006_R1_001_preprocessed_downsampled.bam
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ELS443A20_S185_L006_R1_001_preprocessed_downsampled_SJ.out.tab
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ELS443A20_S185_L006_R1_001_preprocessed_downsampled.bam.bai
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ELS443A20_S185_L006_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
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