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Folder iconCORALL_Chr_Np_fract_HCT116_XRN2_AID

Julian Zagalak
July 18, 2019

3. Chromatin, TIR1, siCTRL, aux

Samtools idxstats
idxstat_report.txt
5.93 kB
Samtools idxstats
idxstat_report.txt
5.94 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.fastq.gz
52.73 MB
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
37.98 MB
ZAG402A51_S23_L003_R1_001_preprocessed.bam.bai
3.68 MB
ZAG402A51_S23_L003_R1_001_preprocessed_SJ.out.tab
3.65 MB
ZAG402A51_S23_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A51_S23_L003_R1_001_preprocessed.bam
558.16 MB
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam
2.43 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.24 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam.bai
4.93 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_SJ.out.tab
52.51 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A51_S23_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A51_S23_L003_R1_001_preprocessed_rc.tab.gz
236.34 kB
ZAG402A51_S23_L003_R1_001_preprocessed_cpm.tab.gz
223.60 kB
ZAG402A51_S23_L003_R1_001_preprocessed_tpm.tab.gz
372.71 kB
ZAG402A51_S23_L003_R1_001_preprocessed_fpkm.tab.gz
372.44 kB
ZAG402A51_S23_L003_R1_001_preprocessed_expressions.txt.gz
1015.27 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A51_S23_L003_R1_001.fastq.gz
439.40 MB
stderr.txt
1.09 kB
ZAG402A51_S23_L003_R1_001_fastqc.zip
436.36 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.41 MB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam
2.51 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.44 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.22 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
BBDuk (single-end)
ZAG402A51_S23_L003_R1_001_preprocessed.fastq.gz
363.78 MB
ZAG402A51_S23_L003_R1_001_statistics.txt.gz
490 B
fastqc
Directory
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.66 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam
2.43 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.79 kB
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
29.92 MB
ZAG402A51_S23_L003_R1_001_preprocessed.bam
525.73 MB
ZAG402A51_S23_L003_R1_001_preprocessed.bam.bai
2.82 MB
ZAG402A51_S23_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A51_S23_L003_R1_001_preprocessed_SJ.out.tab
3.00 MB
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.49 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam
2.68 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_SJ.out.tab
66.22 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam.bai
5.05 kB
BBDuk (single-end)
ZAG402A51_S23_L003_R1_001_statistics.txt.gz
894 B
fastqc
Directory
ZAG402A51_S23_L003_R1_001_preprocessed.fastq.gz
312.56 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.fastq.gz
47.96 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A51_S23_L003_R1_001_preprocessed_rc.tab.gz
236.11 kB
ZAG402A51_S23_L003_R1_001_preprocessed_tpm.tab.gz
374.35 kB
ZAG402A51_S23_L003_R1_001_preprocessed_fpkm.tab.gz
374.27 kB
ZAG402A51_S23_L003_R1_001_preprocessed_expressions.txt.gz
1019.06 kB
ZAG402A51_S23_L003_R1_001_preprocessed_cpm.tab.gz
223.31 kB
ZAG402A51_S23_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB

10. Chromatin, XRN2, siCTRL, dmso

Samtools idxstats
idxstat_report.txt
5.94 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
QoRTs QC
qorts_report.zip
9.14 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.fastq.gz
47.56 MB
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.91 MB
ZAG402A58_S30_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A58_S30_L003_R1_001_preprocessed.bam.bai
3.65 MB
ZAG402A58_S30_L003_R1_001_preprocessed.bam
504.68 MB
ZAG402A58_S30_L003_R1_001_preprocessed_SJ.out.tab
3.47 MB
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam.bai
4.55 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.17 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam
2.39 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_SJ.out.tab
57.17 kB
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
42.32 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam
2.28 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.13 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam
2.22 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.26 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam.bai
4.45 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_SJ.out.tab
45.85 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A58_S30_L003_R1_001_fastqc.zip
442.82 kB
stderr.txt
1.09 kB
ZAG402A58_S30_L003_R1_001.fastq.gz
376.25 MB
featureCounts
ZAG402A58_S30_L003_R1_001_preprocessed_rc.tab.gz
234.85 kB
ZAG402A58_S30_L003_R1_001_preprocessed_tpm.tab.gz
365.14 kB
ZAG402A58_S30_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
358 B
ZAG402A58_S30_L003_R1_001_preprocessed_fpkm.tab.gz
365.15 kB
ZAG402A58_S30_L003_R1_001_preprocessed_expressions.txt.gz
993.17 kB
ZAG402A58_S30_L003_R1_001_preprocessed_cpm.tab.gz
220.00 kB
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam
2.25 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.19 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.30 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.fastq.gz
44.48 MB
featureCounts
featureCounts_rc.txt.summary
358 B
results
Directory
ZAG402A58_S30_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A58_S30_L003_R1_001_preprocessed_rc.tab.gz
234.63 kB
ZAG402A58_S30_L003_R1_001_preprocessed_tpm.tab.gz
364.42 kB
ZAG402A58_S30_L003_R1_001_preprocessed_fpkm.tab.gz
364.05 kB
ZAG402A58_S30_L003_R1_001_preprocessed_cpm.tab.gz
220.11 kB
ZAG402A58_S30_L003_R1_001_preprocessed_expressions.txt.gz
991.49 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A58_S30_L003_R1_001_preprocessed.fastq.gz
252.99 MB
ZAG402A58_S30_L003_R1_001_statistics.txt.gz
884 B
BBDuk (single-end)
fastqc
Directory
ZAG402A58_S30_L003_R1_001_preprocessed.fastq.gz
295.06 MB
ZAG402A58_S30_L003_R1_001_statistics.txt.gz
494 B
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_SJ.out.tab
2.75 MB
ZAG402A58_S30_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
29.43 MB
ZAG402A58_S30_L003_R1_001_preprocessed.bam.bai
2.87 MB
ZAG402A58_S30_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A58_S30_L003_R1_001_preprocessed.bam
453.99 MB

19. Chromatin, XRN2, siEXOSC3, aux

BBDuk (single-end)
fastqc
Directory
ZAG402A67_S39_L003_R1_001_preprocessed.fastq.gz
101.82 MB
ZAG402A67_S39_L003_R1_001_statistics.txt.gz
425 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.fastq.gz
47.45 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.84 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A67_S39_L003_R1_001.fastq.gz
123.35 MB
ZAG402A67_S39_L003_R1_001_fastqc.zip
446.89 kB
stderr.txt
1.09 kB
QoRTs QC
qorts_report.zip
8.37 MB
qorts_output
Directory
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam
4.15 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.72 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_SJ.out.tab
21.04 kB
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
12.11 MB
ZAG402A67_S39_L003_R1_001_preprocessed.bam
177.49 MB
ZAG402A67_S39_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A67_S39_L003_R1_001_preprocessed.bam.bai
3.93 MB
ZAG402A67_S39_L003_R1_001_preprocessed_SJ.out.tab
1.78 MB
ZAG402A67_S39_L003_R1_001_preprocessed.bw
8.85 MB
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.93 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_SJ.out.tab
62.21 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam.bai
5.21 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam
2.66 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
ZAG402A67_S39_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A67_S39_L003_R1_001_preprocessed_tpm.tab.gz
308.00 kB
ZAG402A67_S39_L003_R1_001_preprocessed_rc.tab.gz
225.22 kB
ZAG402A67_S39_L003_R1_001_preprocessed_fpkm.tab.gz
307.09 kB
ZAG402A67_S39_L003_R1_001_preprocessed_cpm.tab.gz
198.56 kB
ZAG402A67_S39_L003_R1_001_preprocessed_expressions.txt.gz
833.81 kB
featureCounts_rc.txt.summary
356 B
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam
4.16 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.55 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_SJ.out.tab
19.71 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam
2.39 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam.bai
5.11 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_SJ.out.tab
47.37 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.03 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.fastq.gz
51.54 MB
Samtools idxstats
idxstat_report.txt
5.86 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A67_S39_L003_R1_001_preprocessed.fastq.gz
87.22 MB
ZAG402A67_S39_L003_R1_001_statistics.txt.gz
719 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
356 B
ZAG402A67_S39_L003_R1_001_preprocessed_fpkm.tab.gz
306.82 kB
ZAG402A67_S39_L003_R1_001_preprocessed_rc.tab.gz
225.08 kB
ZAG402A67_S39_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A67_S39_L003_R1_001_preprocessed_tpm.tab.gz
307.83 kB
ZAG402A67_S39_L003_R1_001_preprocessed_cpm.tab.gz
198.60 kB
ZAG402A67_S39_L003_R1_001_preprocessed_expressions.txt.gz
832.59 kB
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
9.58 MB
ZAG402A67_S39_L003_R1_001_preprocessed.bam
162.20 MB
ZAG402A67_S39_L003_R1_001_preprocessed.bam.bai
2.60 MB
ZAG402A67_S39_L003_R1_001_preprocessed.bw
8.00 MB
ZAG402A67_S39_L003_R1_001_preprocessed_SJ.out.tab
1.50 MB
ZAG402A67_S39_L003_R1_001_preprocessed_stats.txt
1.81 kB

13. Chromatin, XRN2, siMATR3, aux

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.90 kB
STAR
ZAG402A61_S33_L003_R1_001_preprocessed.bam.bai
3.79 MB
ZAG402A61_S33_L003_R1_001_preprocessed_SJ.out.tab
3.39 MB
ZAG402A61_S33_L003_R1_001_preprocessed.bam
480.15 MB
ZAG402A61_S33_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A61_S33_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.66 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A61_S33_L003_R1_001.fastq.gz
377.11 MB
stderr.txt
1.09 kB
ZAG402A61_S33_L003_R1_001_fastqc.zip
432.96 kB
STAR
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.50 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam
3.21 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_SJ.out.tab
16.67 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.13 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_SJ.out.tab
52.01 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam
2.48 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam.bai
5.05 kB
featureCounts
ZAG402A61_S33_L003_R1_001_preprocessed_fpkm.tab.gz
343.44 kB
ZAG402A61_S33_L003_R1_001_preprocessed_tpm.tab.gz
343.53 kB
featureCounts_rc.txt.summary
358 B
ZAG402A61_S33_L003_R1_001_preprocessed_rc.tab.gz
233.67 kB
ZAG402A61_S33_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A61_S33_L003_R1_001_preprocessed_expressions.txt.gz
944.15 kB
ZAG402A61_S33_L003_R1_001_preprocessed_cpm.tab.gz
218.03 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.fastq.gz
51.62 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.16 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A61_S33_L003_R1_001_preprocessed.fastq.gz
306.61 MB
ZAG402A61_S33_L003_R1_001_statistics.txt.gz
471 B
BBDuk (single-end)
fastqc
Directory
ZAG402A61_S33_L003_R1_001_preprocessed.fastq.gz
259.75 MB
ZAG402A61_S33_L003_R1_001_statistics.txt.gz
901 B
STAR
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.67 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam
3.23 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_SJ.out.tab
17.62 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.fastq.gz
47.62 MB
STAR
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.13 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam
2.69 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam.bai
5.20 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_SJ.out.tab
64.01 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A61_S33_L003_R1_001_preprocessed.bam.bai
2.83 MB
ZAG402A61_S33_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
29.53 MB
ZAG402A61_S33_L003_R1_001_preprocessed.bam
438.13 MB
ZAG402A61_S33_L003_R1_001_preprocessed_stats.txt
1.81 kB
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No Sample

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1020.60 kB
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219.70 kB
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Directory
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359 B
ZAG402A95_S67_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
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5.93 kB
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5.90 kB
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Directory
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1.23 MB
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multiqc_data
Directory
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4.41 MB
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899.22 kB
Samtools idxstats
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5.90 kB
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Directory
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BBDuk (single-end)
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Directory
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72.46 MB
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774 B
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Directory
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1.20 MB
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multiqc_data
Directory
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1.20 MB
Samtools idxstats
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5.90 kB
Samtools idxstats
idxstat_report.txt
162 B
Samtools idxstats
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5.88 kB
Samtools idxstats
idxstat_report.txt
5.87 kB
MultiQC
multiqc_data
Directory
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1.20 MB
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multiqc_data
Directory
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1.20 MB
Samtools idxstats
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5.88 kB
MultiQC
multiqc_data
Directory
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1.20 MB
Samtools idxstats
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5.93 kB
Samtools idxstats
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5.91 kB
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Directory
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1.20 MB
MultiQC
multiqc_data
Directory
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1.20 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
MultiQC
multiqc_data
Directory
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1.20 MB
MultiQC
multiqc_data
Directory
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1.23 MB
Samtools idxstats
idxstat_report.txt
5.96 kB
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multiqc_data
Directory
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1.23 MB
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qorts_output
Directory
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5.92 kB
Samtools idxstats
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5.91 kB
MultiQC
multiqc_data
Directory
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1.20 MB
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5.88 kB
Samtools idxstats
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5.93 kB
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1.01 MB
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STAR
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.73 MB
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2.83 kB
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1.69 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_SJ.out.tab
42.13 kB
Samtools idxstats
idxstat_report.txt
5.88 kB
MultiQC
multiqc_data
Directory
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1.20 MB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.01 MB
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504.86 MB
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2.73 MB
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2.96 MB
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Directory
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8.86 MB
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5.93 kB
Samtools idxstats
idxstat_report.txt
5.93 kB
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multiqc_data
Directory
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1.20 MB
Samtools idxstats
idxstat_report.txt
5.93 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.93 kB
Samtools idxstats
idxstat_report.txt
5.94 kB
Samtools idxstats
idxstat_report.txt
5.94 kB
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5.94 kB
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5.91 kB
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featureCounts
ZAG402A90_S62_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
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359 B
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FASTQ file (single-end)
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Directory
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438.30 kB
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350.01 MB
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FASTQ file (single-end)
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Directory
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409.02 MB
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176.62 MB
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STAR
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ZAG402A92_S64_L003_R1_001.fastq.gz
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ZAG402A96_S68_L003_R1_001_fastqc.zip
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ZAG402A83_S55_L003_R1_001_fastqc.zip
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310.64 MB
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52.09 MB
fastqc
Directory
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qorts_report.zip
9.39 MB
qorts_output
Directory
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multiqc_data
Directory
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1.23 MB
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ZAG402A54_S26_L003_R1_001_preprocessed_rc.tab.gz
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qorts_report.zip
8.37 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
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1.20 MB
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5.91 kB
STAR
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam
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4.41 MB
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Samtools idxstats
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MultiQC
multiqc_data
Directory
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Directory
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53.04 MB
MultiQC
multiqc_data
Directory
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1.20 MB
STAR
ZAG402A65_S37_L003_R1_001_preprocessed.bam.bai
2.76 MB
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STAR
ZAG402A70_S42_L003_R1_001_preprocessed.bam
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ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam
2.27 MB
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Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.fastq.gz
41.38 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
QoRTs QC
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Directory
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51.64 MB
FASTQ file (single-end)
fastqc
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stderr.txt
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MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
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MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
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1.20 MB
multiqc_data
Directory
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Directory
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FASTQ file (single-end)
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469 B
ZAG402A56_S28_L003_R1_001_preprocessed.fastq.gz
243.16 MB
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featureCounts
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ZAG402A87_S59_L003_R1_001_preprocessed_rc.tab.gz
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351.91 kB
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359 B
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Subsample FASTQ (single-end)
fastqc
Directory
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53.12 MB
featureCounts
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Directory
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ZAG402A70_S42_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A70_S42_L003_R1_001_preprocessed_rc.tab.gz
234.30 kB
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373.36 kB
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218.46 kB
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373.92 kB
ZAG402A70_S42_L003_R1_001_preprocessed_expressions.txt.gz
1009.99 kB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
Subsample FASTQ (single-end)
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Directory
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.fastq.gz
47.19 MB
Subsample FASTQ (single-end)
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.fastq.gz
46.50 MB
fastqc
Directory
Samtools idxstats
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STAR
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STAR
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ZAG402A56_S28_L003_R1_001_preprocessed_stats.txt
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ZAG402A56_S28_L003_R1_001_preprocessed.bam
401.55 MB
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
37.98 MB
ZAG402A51_S23_L003_R1_001_preprocessed.bam.bai
3.68 MB
ZAG402A51_S23_L003_R1_001_preprocessed_SJ.out.tab
3.65 MB
ZAG402A51_S23_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A51_S23_L003_R1_001_preprocessed.bam
558.16 MB
STAR
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam.bai
5.05 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.23 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam
2.61 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_SJ.out.tab
61.30 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.fastq.gz
47.56 MB
STAR
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.35 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam.bai
4.54 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_SJ.out.tab
55.62 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam
2.41 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.fastq.gz
46.71 MB
STAR
ZAG402A50_S22_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.25 MB
ZAG402A50_S22_L003_R1_001_preprocessed.bam.bai
3.56 MB
ZAG402A50_S22_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A50_S22_L003_R1_001_preprocessed.bam
461.22 MB
ZAG402A50_S22_L003_R1_001_preprocessed_SJ.out.tab
3.22 MB
STAR
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.04 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam
4.13 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_SJ.out.tab
22.44 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.91 MB
ZAG402A58_S30_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A58_S30_L003_R1_001_preprocessed.bam.bai
3.65 MB
ZAG402A58_S30_L003_R1_001_preprocessed.bam
504.68 MB
ZAG402A58_S30_L003_R1_001_preprocessed_SJ.out.tab
3.47 MB
featureCounts
ZAG402A50_S22_L003_R1_001_preprocessed_rc.tab.gz
234.88 kB
featureCounts_rc.txt.summary
358 B
ZAG402A50_S22_L003_R1_001_preprocessed_tpm.tab.gz
389.72 kB
ZAG402A50_S22_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A50_S22_L003_R1_001_preprocessed_cpm.tab.gz
219.22 kB
ZAG402A50_S22_L003_R1_001_preprocessed_fpkm.tab.gz
389.07 kB
results
Directory
ZAG402A50_S22_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
STAR
ZAG402A59_S31_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
34.36 MB
ZAG402A59_S31_L003_R1_001_preprocessed.bam
488.14 MB
ZAG402A59_S31_L003_R1_001_preprocessed.bam.bai
3.80 MB
ZAG402A59_S31_L003_R1_001_preprocessed_SJ.out.tab
3.31 MB
ZAG402A59_S31_L003_R1_001_preprocessed_stats.txt
1.81 kB
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
41.88 MB
ZAG402A62_S34_L003_R1_001_preprocessed.bam.bai
3.01 MB
ZAG402A62_S34_L003_R1_001_preprocessed.bam
592.05 MB
ZAG402A62_S34_L003_R1_001_preprocessed_SJ.out.tab
3.71 MB
ZAG402A62_S34_L003_R1_001_preprocessed_stats.txt
1.81 kB
STAR
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.51 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam
3.17 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.81 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam.bai
4.55 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.17 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam
2.39 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_SJ.out.tab
57.17 kB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.48 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_SJ.out.tab
8.68 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam
1.48 MB
STAR
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam
2.27 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_SJ.out.tab
50.81 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.20 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam.bai
4.78 kB
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
42.32 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam
2.28 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.13 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A59_S31_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A59_S31_L003_R1_001_preprocessed_fpkm.tab.gz
358.12 kB
ZAG402A59_S31_L003_R1_001_preprocessed_rc.tab.gz
234.44 kB
ZAG402A59_S31_L003_R1_001_preprocessed_tpm.tab.gz
358.09 kB
ZAG402A59_S31_L003_R1_001_preprocessed_cpm.tab.gz
219.51 kB
ZAG402A59_S31_L003_R1_001_preprocessed_expressions.txt.gz
978.11 kB
STAR
ZAG402A63_S35_L003_R1_001_preprocessed.bam.bai
3.58 MB
ZAG402A63_S35_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
35.80 MB
ZAG402A63_S35_L003_R1_001_preprocessed.bam
526.39 MB
ZAG402A63_S35_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A63_S35_L003_R1_001_preprocessed_SJ.out.tab
3.53 MB
featureCounts
ZAG402A54_S26_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A54_S26_L003_R1_001_preprocessed_rc.tab.gz
228.59 kB
featureCounts_rc.txt.summary
357 B
ZAG402A54_S26_L003_R1_001_preprocessed_fpkm.tab.gz
317.10 kB
ZAG402A54_S26_L003_R1_001_preprocessed_tpm.tab.gz
317.49 kB
ZAG402A54_S26_L003_R1_001_preprocessed_expressions.txt.gz
867.30 kB
ZAG402A54_S26_L003_R1_001_preprocessed_cpm.tab.gz
205.72 kB
Samtools idxstats
idxstat_report.txt
5.94 kB
STAR
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
39.05 MB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_SJ.out.tab
47.21 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam.bai
3.77 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam
1.81 MB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam
2.11 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.41 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.32 MB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed.bam.bai
3.45 MB
ZAG402A68_S40_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.46 MB
ZAG402A68_S40_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A68_S40_L003_R1_001_preprocessed_SJ.out.tab
3.75 MB
ZAG402A68_S40_L003_R1_001_preprocessed.bam
632.39 MB
STAR
ZAG402A60_S32_L003_R1_001_preprocessed.bam.bai
3.76 MB
ZAG402A60_S32_L003_R1_001_preprocessed.bam
525.39 MB
ZAG402A60_S32_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.52 MB
ZAG402A60_S32_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A60_S32_L003_R1_001_preprocessed_SJ.out.tab
3.53 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.fastq.gz
51.52 MB
STAR
ZAG402A76_S48_L003_R1_001_preprocessed.bam.bai
3.75 MB
ZAG402A76_S48_L003_R1_001_preprocessed.bam
240.24 MB
ZAG402A76_S48_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
16.92 MB
ZAG402A76_S48_L003_R1_001_preprocessed_SJ.out.tab
2.60 MB
ZAG402A76_S48_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A76_S48_L003_R1_001_preprocessed.bw
10.39 MB
STAR
ZAG402A69_S41_L003_R1_001_preprocessed.bam
304.69 MB
ZAG402A69_S41_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
20.24 MB
ZAG402A69_S41_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A69_S41_L003_R1_001_preprocessed_SJ.out.tab
2.96 MB
ZAG402A69_S41_L003_R1_001_preprocessed.bam.bai
3.82 MB
QoRTs QC
qorts_report.zip
9.51 MB
qorts_output
Directory
STAR
ZAG402A64_S36_L003_R1_001_preprocessed.bam.bai
3.56 MB
ZAG402A64_S36_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
34.91 MB
ZAG402A64_S36_L003_R1_001_preprocessed.bam
550.91 MB
ZAG402A64_S36_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A64_S36_L003_R1_001_preprocessed_SJ.out.tab
3.57 MB
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam
4.15 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.72 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_SJ.out.tab
21.04 kB
STAR
ZAG402A61_S33_L003_R1_001_preprocessed.bam.bai
3.79 MB
ZAG402A61_S33_L003_R1_001_preprocessed_SJ.out.tab
3.39 MB
ZAG402A61_S33_L003_R1_001_preprocessed.bam
480.15 MB
ZAG402A61_S33_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A61_S33_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.66 MB
STAR
ZAG402A65_S37_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
39.31 MB
ZAG402A65_S37_L003_R1_001_preprocessed.bam.bai
3.55 MB
ZAG402A65_S37_L003_R1_001_preprocessed.bam
555.30 MB
ZAG402A65_S37_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A65_S37_L003_R1_001_preprocessed_SJ.out.tab
3.72 MB
STAR
ZAG402A66_S38_L003_R1_001_preprocessed.bam.bai
3.76 MB
ZAG402A66_S38_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.78 MB
ZAG402A66_S38_L003_R1_001_preprocessed.bam
405.15 MB
ZAG402A66_S38_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A66_S38_L003_R1_001_preprocessed_SJ.out.tab
3.09 MB
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
12.11 MB
ZAG402A67_S39_L003_R1_001_preprocessed.bam
177.49 MB
ZAG402A67_S39_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A67_S39_L003_R1_001_preprocessed.bam.bai
3.93 MB
ZAG402A67_S39_L003_R1_001_preprocessed_SJ.out.tab
1.78 MB
ZAG402A67_S39_L003_R1_001_preprocessed.bw
8.85 MB
STAR
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
42.45 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.37 kB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam
2.47 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A80_S52_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
17.26 MB
ZAG402A80_S52_L003_R1_001_preprocessed.bam.bai
4.26 MB
ZAG402A80_S52_L003_R1_001_preprocessed.bam
171.71 MB
ZAG402A80_S52_L003_R1_001_preprocessed_SJ.out.tab
1.74 MB
ZAG402A80_S52_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A80_S52_L003_R1_001_preprocessed.bw
9.42 MB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed.bam
750.33 MB
ZAG402A72_S44_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
50.90 MB
ZAG402A72_S44_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A72_S44_L003_R1_001_preprocessed.bam.bai
3.21 MB
ZAG402A72_S44_L003_R1_001_preprocessed_SJ.out.tab
4.34 MB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam.bai
5.09 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam
2.71 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.99 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_SJ.out.tab
63.00 kB
STAR
ZAG402A75_S47_L003_R1_001_preprocessed.bam.bai
3.77 MB
ZAG402A75_S47_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
36.62 MB
ZAG402A75_S47_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A75_S47_L003_R1_001_preprocessed_SJ.out.tab
4.36 MB
ZAG402A75_S47_L003_R1_001_preprocessed.bam
509.29 MB
STAR
ZAG402A73_S45_L003_R1_001_preprocessed.bam
438.18 MB
ZAG402A73_S45_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A73_S45_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
35.05 MB
ZAG402A73_S45_L003_R1_001_preprocessed.bam.bai
3.79 MB
ZAG402A73_S45_L003_R1_001_preprocessed_SJ.out.tab
3.18 MB
STAR
ZAG402A71_S43_L003_R1_001_preprocessed.bam.bai
3.71 MB
ZAG402A71_S43_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
40.33 MB
ZAG402A71_S43_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A71_S43_L003_R1_001_preprocessed_SJ.out.tab
3.61 MB
ZAG402A71_S43_L003_R1_001_preprocessed.bam
559.59 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
STAR
ZAG402A70_S42_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
31.43 MB
ZAG402A70_S42_L003_R1_001_preprocessed.bam
518.68 MB
ZAG402A70_S42_L003_R1_001_preprocessed.bam.bai
3.59 MB
ZAG402A70_S42_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A70_S42_L003_R1_001_preprocessed_SJ.out.tab
3.42 MB
STAR
ZAG402A77_S49_L003_R1_001_preprocessed.bam
459.58 MB
ZAG402A77_S49_L003_R1_001_preprocessed.bam.bai
3.68 MB
ZAG402A77_S49_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.24 MB
ZAG402A77_S49_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A77_S49_L003_R1_001_preprocessed_SJ.out.tab
4.21 MB
STAR
ZAG402A79_S51_L003_R1_001_preprocessed.bam.bai
3.96 MB
ZAG402A79_S51_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
26.16 MB
ZAG402A79_S51_L003_R1_001_preprocessed_SJ.out.tab
2.72 MB
ZAG402A79_S51_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A79_S51_L003_R1_001_preprocessed.bam
345.02 MB
STAR
ZAG402A74_S46_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
36.91 MB
ZAG402A74_S46_L003_R1_001_preprocessed.bam
502.27 MB
ZAG402A74_S46_L003_R1_001_preprocessed.bam.bai
3.67 MB
ZAG402A74_S46_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A74_S46_L003_R1_001_preprocessed_SJ.out.tab
4.60 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.fastq.gz
52.53 MB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam.bai
5.09 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.88 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam
2.71 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_SJ.out.tab
61.13 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A81_S53_L003_R1_001_preprocessed.bam.bai
3.89 MB
ZAG402A81_S53_L003_R1_001_preprocessed.bam
478.17 MB
ZAG402A81_S53_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
35.69 MB
ZAG402A81_S53_L003_R1_001_preprocessed_SJ.out.tab
3.73 MB
ZAG402A81_S53_L003_R1_001_preprocessed_stats.txt
1.81 kB
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ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam
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ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam.bai
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Subsample FASTQ (single-end)
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ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.fastq.gz
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fastqc
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Subsample FASTQ (single-end)
fastqc
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48.88 MB
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ZAG402A87_S59_L003_R1_001_preprocessed.bam.bai
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fastqc
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50.88 MB
featureCounts
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ZAG402A85_S57_L003_R1_001_preprocessed_stats.txt
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ZAG402A91_S63_L003_R1_001_preprocessed.bam
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ZAG402A91_S63_L003_R1_001_preprocessed_stats.txt
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Subsample FASTQ (single-end)
fastqc
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51.78 MB
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ZAG402A89_S61_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
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ZAG402A89_S61_L003_R1_001_preprocessed.bam
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fastqc
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ZAG402A86_S58_L003_R1_001_preprocessed_stats.txt
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fastqc
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ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.fastq.gz
51.47 MB
BBDuk (single-end)
fastqc
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238.37 MB
ZAG402A88_S60_L003_R1_001_statistics.txt.gz
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ZAG402A92_S64_L003_R1_001_preprocessed_stats.txt
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46.47 MB
MultiQC
multiqc_data
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1.23 MB
BBDuk (single-end)
fastqc
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ZAG402A80_S52_L003_R1_001_preprocessed.bw
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ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam
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ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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Subsample FASTQ (single-end)
fastqc
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ZAG402A90_S62_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
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ZAG402A90_S62_L003_R1_001_preprocessed.bam.bai
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featureCounts
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ZAG402A49_S21_L003_R1_001_preprocessed_stats.txt
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Subsample FASTQ (single-end)
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.fastq.gz
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fastqc
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ZAG402A93_S65_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
53.25 MB
ZAG402A93_S65_L003_R1_001_preprocessed.bam.bai
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Subsample FASTQ (single-end)
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MultiQC
multiqc_report.html
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multiqc_data
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ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam
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ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam
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ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.fastq.gz
49.39 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A66_S38_L003_R1_001.fastq.gz
295.36 MB
ZAG402A66_S38_L003_R1_001_fastqc.zip
437.88 kB
STAR
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam
2.00 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.72 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_SJ.out.tab
10.49 kB
QoRTs QC
qorts_report.zip
9.28 MB
qorts_output
Directory
STAR
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.39 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam
2.30 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.52 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam.bai
4.56 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A57_S29_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A57_S29_L003_R1_001_preprocessed_fpkm.tab.gz
345.86 kB
ZAG402A57_S29_L003_R1_001_preprocessed_rc.tab.gz
233.34 kB
ZAG402A57_S29_L003_R1_001_preprocessed_cpm.tab.gz
216.85 kB
ZAG402A57_S29_L003_R1_001_preprocessed_expressions.txt.gz
947.38 kB
ZAG402A57_S29_L003_R1_001_preprocessed_tpm.tab.gz
346.43 kB
STAR
ZAG402A96_S68_L003_R1_001_preprocessed.bam.bai
3.68 MB
ZAG402A96_S68_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
71.35 MB
ZAG402A96_S68_L003_R1_001_preprocessed.bam
910.05 MB
ZAG402A96_S68_L003_R1_001_preprocessed_SJ.out.tab
5.89 MB
ZAG402A96_S68_L003_R1_001_preprocessed_stats.txt
1.82 kB
STAR
ZAG402A94_S66_L003_R1_001_preprocessed.bam
825.71 MB
ZAG402A94_S66_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
67.58 MB
ZAG402A94_S66_L003_R1_001_preprocessed_stats.txt
1.82 kB
ZAG402A94_S66_L003_R1_001_preprocessed_SJ.out.tab
5.55 MB
ZAG402A94_S66_L003_R1_001_preprocessed.bam.bai
3.63 MB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.59 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam.bai
4.95 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam
2.63 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_SJ.out.tab
62.99 kB
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam
2.43 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.24 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam.bai
4.93 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_SJ.out.tab
52.51 kB
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A56_S28_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A56_S28_L003_R1_001_preprocessed_expressions.txt.gz
980.10 kB
ZAG402A56_S28_L003_R1_001_preprocessed_tpm.tab.gz
363.55 kB
ZAG402A56_S28_L003_R1_001_preprocessed_fpkm.tab.gz
363.11 kB
ZAG402A56_S28_L003_R1_001_preprocessed_cpm.tab.gz
214.38 kB
ZAG402A56_S28_L003_R1_001_preprocessed_rc.tab.gz
232.70 kB
STAR
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam
1.72 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.44 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_SJ.out.tab
9.26 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam
2.36 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam.bai
4.45 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.85 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_SJ.out.tab
50.64 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A53_S25_L003_R1_001.fastq.gz
285.74 MB
stderr.txt
1.09 kB
ZAG402A53_S25_L003_R1_001_fastqc.zip
440.22 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A51_S23_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A51_S23_L003_R1_001_preprocessed_rc.tab.gz
236.34 kB
ZAG402A51_S23_L003_R1_001_preprocessed_cpm.tab.gz
223.60 kB
ZAG402A51_S23_L003_R1_001_preprocessed_tpm.tab.gz
372.71 kB
ZAG402A51_S23_L003_R1_001_preprocessed_fpkm.tab.gz
372.44 kB
ZAG402A51_S23_L003_R1_001_preprocessed_expressions.txt.gz
1015.27 kB
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam
2.22 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.26 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam.bai
4.45 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_SJ.out.tab
45.85 kB
Samtools idxstats
idxstat_report.txt
5.90 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A58_S30_L003_R1_001_fastqc.zip
442.82 kB
stderr.txt
1.09 kB
ZAG402A58_S30_L003_R1_001.fastq.gz
376.25 MB
featureCounts
ZAG402A50_S22_L003_R1_001_preprocessed_fpkm.tab.gz
388.06 kB
featureCounts_rc.txt.summary
358 B
ZAG402A50_S22_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A50_S22_L003_R1_001_preprocessed_tpm.tab.gz
388.31 kB
ZAG402A50_S22_L003_R1_001_preprocessed_rc.tab.gz
235.16 kB
ZAG402A50_S22_L003_R1_001_preprocessed_cpm.tab.gz
219.71 kB
ZAG402A50_S22_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.39 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_SJ.out.tab
8.37 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam
1.52 MB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A79_S51_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A79_S51_L003_R1_001_preprocessed_fpkm.tab.gz
323.09 kB
ZAG402A79_S51_L003_R1_001_preprocessed_rc.tab.gz
231.00 kB
ZAG402A79_S51_L003_R1_001_preprocessed_tpm.tab.gz
323.55 kB
ZAG402A79_S51_L003_R1_001_preprocessed_cpm.tab.gz
212.02 kB
ZAG402A79_S51_L003_R1_001_preprocessed_expressions.txt.gz
891.89 kB
results
Directory
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.67 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam.bai
4.73 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam
2.38 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.20 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
FASTQ file (single-end)
ZAG402A55_S27_L003_R1_001.fastq.gz
241.70 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A55_S27_L003_R1_001_fastqc.zip
443.74 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
ZAG402A58_S30_L003_R1_001_preprocessed_rc.tab.gz
234.85 kB
ZAG402A58_S30_L003_R1_001_preprocessed_tpm.tab.gz
365.14 kB
ZAG402A58_S30_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
358 B
ZAG402A58_S30_L003_R1_001_preprocessed_fpkm.tab.gz
365.15 kB
ZAG402A58_S30_L003_R1_001_preprocessed_expressions.txt.gz
993.17 kB
ZAG402A58_S30_L003_R1_001_preprocessed_cpm.tab.gz
220.00 kB
FASTQ file (single-end)
ZAG402A54_S26_L003_R1_001.fastq.gz
206.62 MB
stderr.txt
1.09 kB
fastqc
Directory
ZAG402A54_S26_L003_R1_001_fastqc.zip
434.64 kB
STAR
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam
2.45 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.15 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.69 kB
FASTQ file (single-end)
ZAG402A52_S24_L003_R1_001_fastqc.zip
435.35 kB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A52_S24_L003_R1_001.fastq.gz
329.84 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A51_S23_L003_R1_001.fastq.gz
439.40 MB
stderr.txt
1.09 kB
ZAG402A51_S23_L003_R1_001_fastqc.zip
436.36 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A50_S22_L003_R1_001_fastqc.zip
436.82 kB
ZAG402A50_S22_L003_R1_001.fastq.gz
346.32 MB
Samtools idxstats
idxstat_report.txt
5.89 kB
STAR
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.24 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam.bai
4.52 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam
2.24 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.64 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A59_S31_L003_R1_001.fastq.gz
384.19 MB
ZAG402A59_S31_L003_R1_001_fastqc.zip
430.40 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A61_S33_L003_R1_001.fastq.gz
377.11 MB
stderr.txt
1.09 kB
ZAG402A61_S33_L003_R1_001_fastqc.zip
432.96 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A60_S32_L003_R1_001.fastq.gz
419.07 MB
ZAG402A60_S32_L003_R1_001_fastqc.zip
436.31 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
ZAG402A63_S35_L003_R1_001.fastq.gz
396.67 MB
fastqc
Directory
ZAG402A63_S35_L003_R1_001_fastqc.zip
442.53 kB
stderr.txt
1.09 kB
STAR
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam
2.36 MB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.32 kB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.23 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A64_S36_L003_R1_001_fastqc.zip
440.74 kB
ZAG402A64_S36_L003_R1_001.fastq.gz
401.79 MB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
featureCounts
ZAG402A59_S31_L003_R1_001_preprocessed_rc.tab.gz
234.64 kB
ZAG402A59_S31_L003_R1_001_preprocessed_fpkm.tab.gz
355.50 kB
featureCounts_rc.txt.summary
358 B
ZAG402A59_S31_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A59_S31_L003_R1_001_preprocessed_tpm.tab.gz
355.67 kB
ZAG402A59_S31_L003_R1_001_preprocessed_cpm.tab.gz
220.07 kB
ZAG402A59_S31_L003_R1_001_preprocessed_expressions.txt.gz
972.53 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A69_S41_L003_R1_001.fastq.gz
224.47 MB
ZAG402A69_S41_L003_R1_001_fastqc.zip
440.81 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A71_S43_L003_R1_001.fastq.gz
429.13 MB
stderr.txt
1.09 kB
ZAG402A71_S43_L003_R1_001_fastqc.zip
441.94 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A73_S45_L003_R1_001.fastq.gz
339.90 MB
ZAG402A73_S45_L003_R1_001_fastqc.zip
434.39 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A74_S46_L003_R1_001.fastq.gz
386.49 MB
ZAG402A74_S46_L003_R1_001_fastqc.zip
440.37 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
ZAG402A75_S47_L003_R1_001.fastq.gz
415.68 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A75_S47_L003_R1_001_fastqc.zip
434.81 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A77_S49_L003_R1_001.fastq.gz
351.09 MB
ZAG402A77_S49_L003_R1_001_fastqc.zip
439.04 kB
stderr.txt
1.09 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A62_S34_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A62_S34_L003_R1_001_preprocessed_fpkm.tab.gz
426.94 kB
ZAG402A62_S34_L003_R1_001_preprocessed_rc.tab.gz
237.14 kB
ZAG402A62_S34_L003_R1_001_preprocessed_tpm.tab.gz
427.50 kB
ZAG402A62_S34_L003_R1_001_preprocessed_cpm.tab.gz
221.87 kB
ZAG402A62_S34_L003_R1_001_preprocessed_expressions.txt.gz
1.11 MB
FASTQ file (single-end)
ZAG402A78_S50_L003_R1_001.fastq.gz
251.57 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A78_S50_L003_R1_001_fastqc.zip
439.04 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A79_S51_L003_R1_001.fastq.gz
264.89 MB
ZAG402A79_S51_L003_R1_001_fastqc.zip
438.47 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
ZAG402A80_S52_L003_R1_001.fastq.gz
121.41 MB
fastqc
Directory
ZAG402A80_S52_L003_R1_001_fastqc.zip
459.92 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A84_S56_L003_R1_001.fastq.gz
446.87 MB
ZAG402A84_S56_L003_R1_001_fastqc.zip
446.03 kB
STAR
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam
2.61 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.94 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_SJ.out.tab
53.02 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam.bai
5.20 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A86_S58_L003_R1_001.fastq.gz
653.78 MB
ZAG402A86_S58_L003_R1_001_fastqc.zip
431.35 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A87_S59_L003_R1_001_fastqc.zip
444.70 kB
ZAG402A87_S59_L003_R1_001.fastq.gz
396.13 MB
FASTQ file (single-end)
ZAG402A88_S60_L003_R1_001.fastq.gz
348.71 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A88_S60_L003_R1_001_fastqc.zip
446.91 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A91_S63_L003_R1_001.fastq.gz
453.19 MB
ZAG402A91_S63_L003_R1_001_fastqc.zip
445.85 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A90_S62_L003_R1_001.fastq.gz
369.36 MB
ZAG402A90_S62_L003_R1_001_fastqc.zip
444.17 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
ZAG402A68_S40_L003_R1_001.fastq.gz
440.37 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A68_S40_L003_R1_001_fastqc.zip
445.63 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A93_S65_L003_R1_001.fastq.gz
607.35 MB
stderr.txt
1.09 kB
ZAG402A93_S65_L003_R1_001_fastqc.zip
431.49 kB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.50 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.35 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam
2.37 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
Samtools idxstats
idxstat_report.txt
5.93 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A81_S53_L003_R1_001.fastq.gz
386.69 MB
stderr.txt
1.09 kB
ZAG402A81_S53_L003_R1_001_fastqc.zip
428.81 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A70_S42_L003_R1_001.fastq.gz
375.47 MB
stderr.txt
1.09 kB
ZAG402A70_S42_L003_R1_001_fastqc.zip
445.09 kB
STAR
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.23 MB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam
2.25 MB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam.bai
4.47 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_SJ.out.tab
55.73 kB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.41 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam.bai
4.88 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_SJ.out.tab
50.76 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam
2.45 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A72_S44_L003_R1_001.fastq.gz
577.26 MB
ZAG402A72_S44_L003_R1_001_fastqc.zip
437.69 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A82_S54_L003_R1_001.fastq.gz
304.44 MB
ZAG402A82_S54_L003_R1_001_fastqc.zip
435.50 kB
stderr.txt
1.09 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A63_S35_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A63_S35_L003_R1_001_preprocessed_tpm.tab.gz
378.29 kB
ZAG402A63_S35_L003_R1_001_preprocessed_rc.tab.gz
235.45 kB
ZAG402A63_S35_L003_R1_001_preprocessed_fpkm.tab.gz
377.84 kB
ZAG402A63_S35_L003_R1_001_preprocessed_expressions.txt.gz
1023.56 kB
ZAG402A63_S35_L003_R1_001_preprocessed_cpm.tab.gz
221.14 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A89_S61_L003_R1_001.fastq.gz
430.14 MB
ZAG402A89_S61_L003_R1_001_fastqc.zip
443.11 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
ZAG402A94_S66_L003_R1_001.fastq.gz
679.99 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A94_S66_L003_R1_001_fastqc.zip
441.25 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A68_S40_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A68_S40_L003_R1_001_preprocessed_fpkm.tab.gz
387.62 kB
ZAG402A68_S40_L003_R1_001_preprocessed_rc.tab.gz
236.00 kB
ZAG402A68_S40_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
ZAG402A68_S40_L003_R1_001_preprocessed_tpm.tab.gz
388.08 kB
ZAG402A68_S40_L003_R1_001_preprocessed_cpm.tab.gz
222.20 kB
STAR
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.11 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.39 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam
2.16 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam.bai
4.98 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.82 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam
2.51 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_SJ.out.tab
51.16 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
ZAG402A60_S32_L003_R1_001_preprocessed_fpkm.tab.gz
358.63 kB
featureCounts_rc.txt.summary
358 B
ZAG402A60_S32_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A60_S32_L003_R1_001_preprocessed_rc.tab.gz
234.98 kB
ZAG402A60_S32_L003_R1_001_preprocessed_tpm.tab.gz
359.15 kB
ZAG402A60_S32_L003_R1_001_preprocessed_cpm.tab.gz
221.86 kB
ZAG402A60_S32_L003_R1_001_preprocessed_expressions.txt.gz
981.47 kB
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A76_S48_L003_R1_001_preprocessed_fpkm.tab.gz
322.16 kB
ZAG402A76_S48_L003_R1_001_preprocessed_rc.tab.gz
229.35 kB
ZAG402A76_S48_L003_R1_001_preprocessed_tpm.tab.gz
322.88 kB
ZAG402A76_S48_L003_R1_001_preprocessed_cpm.tab.gz
207.44 kB
ZAG402A76_S48_L003_R1_001_preprocessed_expressions.txt.gz
882.03 kB
ZAG402A76_S48_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
STAR
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam.bai
4.12 kB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.24 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam
1.95 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_SJ.out.tab
44.84 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.01 MB
QoRTs QC
qorts_report.zip
8.67 MB
qorts_output
Directory
STAR
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.34 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam
2.97 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_SJ.out.tab
15.41 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam.bai
4.34 kB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.99 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_SJ.out.tab
44.30 kB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam
2.02 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.12 MB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.02 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.95 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam
2.16 MB
STAR
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.23 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam
3.10 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_SJ.out.tab
17.34 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.03 MB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.68 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam
2.51 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam.bai
5.09 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_SJ.out.tab
50.74 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A69_S41_L003_R1_001_preprocessed_rc.tab.gz
231.45 kB
ZAG402A69_S41_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A69_S41_L003_R1_001_preprocessed_tpm.tab.gz
334.78 kB
ZAG402A69_S41_L003_R1_001_preprocessed_fpkm.tab.gz
334.58 kB
ZAG402A69_S41_L003_R1_001_preprocessed_expressions.txt.gz
917.48 kB
ZAG402A69_S41_L003_R1_001_preprocessed_cpm.tab.gz
212.55 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.fastq.gz
53.25 MB
STAR
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.50 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam
3.21 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_SJ.out.tab
16.67 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A64_S36_L003_R1_001_preprocessed_tpm.tab.gz
386.37 kB
ZAG402A64_S36_L003_R1_001_preprocessed_rc.tab.gz
236.05 kB
ZAG402A64_S36_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A64_S36_L003_R1_001_preprocessed_fpkm.tab.gz
386.00 kB
ZAG402A64_S36_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
ZAG402A64_S36_L003_R1_001_preprocessed_cpm.tab.gz
222.65 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.41 MB
STAR
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.13 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_SJ.out.tab
52.01 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam
2.48 MB
ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam.bai
5.05 kB
Samtools idxstats
idxstat_report.txt
5.91 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
STAR
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.49 MB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam.bai
4.65 kB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.83 kB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam
2.40 MB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.fastq.gz
50.79 MB
featureCounts
ZAG402A61_S33_L003_R1_001_preprocessed_fpkm.tab.gz
343.44 kB
ZAG402A61_S33_L003_R1_001_preprocessed_tpm.tab.gz
343.53 kB
featureCounts_rc.txt.summary
358 B
ZAG402A61_S33_L003_R1_001_preprocessed_rc.tab.gz
233.67 kB
ZAG402A61_S33_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A61_S33_L003_R1_001_preprocessed_expressions.txt.gz
944.15 kB
ZAG402A61_S33_L003_R1_001_preprocessed_cpm.tab.gz
218.03 kB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam
1.48 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_SJ.out.tab
7.83 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.73 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A52_S24_L003_R1_001_preprocessed.fastq.gz
274.27 MB
ZAG402A52_S24_L003_R1_001_statistics.txt.gz
485 B
QoRTs QC
qorts_output
Directory
qorts_report.zip
8.92 MB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.91 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam
2.47 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam.bai
4.91 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_SJ.out.tab
51.30 kB
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam
2.51 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.44 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.22 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
ZAG402A65_S37_L003_R1_001_preprocessed_rc.tab.gz
236.04 kB
featureCounts_rc.txt.summary
358 B
ZAG402A65_S37_L003_R1_001_preprocessed_cpm.tab.gz
222.19 kB
ZAG402A65_S37_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A65_S37_L003_R1_001_preprocessed_expressions.txt.gz
1.00 MB
ZAG402A65_S37_L003_R1_001_preprocessed_tpm.tab.gz
377.92 kB
ZAG402A65_S37_L003_R1_001_preprocessed_fpkm.tab.gz
377.68 kB
STAR
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.64 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_SJ.out.tab
9.93 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam
1.92 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.17 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam.bai
4.97 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_SJ.out.tab
49.32 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam
2.46 MB
BBDuk (single-end)
ZAG402A82_S54_L003_R1_001_preprocessed.fastq.gz
214.94 MB
fastqc
Directory
ZAG402A82_S54_L003_R1_001_statistics.txt.gz
812 B
STAR
ZAG402A60_S32_L003_R1_001_preprocessed.bam
495.71 MB
ZAG402A60_S32_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
30.48 MB
ZAG402A60_S32_L003_R1_001_preprocessed.bam.bai
2.87 MB
ZAG402A60_S32_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A60_S32_L003_R1_001_preprocessed_SJ.out.tab
2.92 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A84_S56_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
35.01 MB
ZAG402A84_S56_L003_R1_001_preprocessed.bam.bai
2.84 MB
ZAG402A84_S56_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A84_S56_L003_R1_001_preprocessed.bam
504.09 MB
ZAG402A84_S56_L003_R1_001_preprocessed_SJ.out.tab
3.47 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.fastq.gz
51.71 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.17 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
QoRTs QC
qorts_report.zip
9.26 MB
qorts_output
Directory
STAR
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.bam
2.25 MB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.19 kB
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.30 MB
featureCounts
ZAG402A66_S38_L003_R1_001_preprocessed_fpkm.tab.gz
341.75 kB
ZAG402A66_S38_L003_R1_001_preprocessed_rc.tab.gz
231.77 kB
ZAG402A66_S38_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
featureCounts_rc.txt.summary
358 B
ZAG402A66_S38_L003_R1_001_preprocessed_tpm.tab.gz
342.16 kB
ZAG402A66_S38_L003_R1_001_preprocessed_cpm.tab.gz
213.67 kB
ZAG402A66_S38_L003_R1_001_preprocessed_expressions.txt.gz
933.06 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.fastq.gz
46.96 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.fastq.gz
48.81 MB
Samtools idxstats
idxstat_report.txt
5.93 kB
featureCounts
ZAG402A67_S39_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A67_S39_L003_R1_001_preprocessed_tpm.tab.gz
308.00 kB
ZAG402A67_S39_L003_R1_001_preprocessed_rc.tab.gz
225.22 kB
ZAG402A67_S39_L003_R1_001_preprocessed_fpkm.tab.gz
307.09 kB
ZAG402A67_S39_L003_R1_001_preprocessed_cpm.tab.gz
198.56 kB
ZAG402A67_S39_L003_R1_001_preprocessed_expressions.txt.gz
833.81 kB
featureCounts_rc.txt.summary
356 B
BBDuk (single-end)
ZAG402A50_S22_L003_R1_001_preprocessed.fastq.gz
246.64 MB
fastqc
Directory
ZAG402A50_S22_L003_R1_001_statistics.txt.gz
813 B
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam
4.16 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.55 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_SJ.out.tab
19.71 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Subsample FASTQ (single-end)
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.fastq.gz
51.30 MB
fastqc
Directory
STAR
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam
2.39 MB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.bam.bai
5.11 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_SJ.out.tab
47.37 kB
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.03 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A58_S30_L003_R1_001_preprocessed_downsampled.fastq.gz
44.48 MB
featureCounts
ZAG402A80_S52_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
featureCounts_rc.txt.summary
356 B
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STAR
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MultiQC
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Subsample FASTQ (single-end)
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fastqc
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fastqc
Directory
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51.62 MB
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qorts_output
Directory
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MultiQC
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Directory
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featureCounts
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Directory
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fastqc
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fastqc
Directory
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50.64 MB
STAR
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MultiQC
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Directory
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51.49 MB
fastqc
Directory
STAR
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Subsample FASTQ (single-end)
fastqc
Directory
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49.88 MB
STAR
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fastqc
Directory
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STAR
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fastqc
Directory
Subsample FASTQ (single-end)
fastqc
Directory
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QoRTs QC
qorts_report.zip
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qorts_output
Directory
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Directory
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Directory
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STAR
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ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_stats.txt
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MultiQC
multiqc_data
Directory
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Subsample FASTQ (single-end)
fastqc
Directory
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featureCounts
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BBDuk (single-end)
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Directory
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87.22 MB
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Subsample FASTQ (single-end)
fastqc
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50.26 MB
STAR
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
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BBDuk (single-end)
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STAR
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QoRTs QC
qorts_output
Directory
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MultiQC
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Directory
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BBDuk (single-end)
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Directory
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ZAG402A54_S26_L003_R1_001_preprocessed.fastq.gz
171.61 MB
QoRTs QC
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qorts_output
Directory
MultiQC
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Directory
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1.23 MB
STAR
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fastqc
Directory
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featureCounts
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results
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featureCounts
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4.42 MB
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Subsample FASTQ (single-end)
fastqc
Directory
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52.68 MB
STAR
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam.bai
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STAR
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MultiQC
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1.23 MB
multiqc_data
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QoRTs QC
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qorts_output
Directory
STAR
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336 B
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam
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44.77 MB
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Samtools idxstats
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QoRTs QC
qorts_report.zip
9.30 MB
qorts_output
Directory
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QoRTs QC
qorts_output
Directory
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featureCounts
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358 B
ZAG402A71_S43_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
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BBDuk (single-end)
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295.61 MB
fastqc
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STAR
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336 B
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2.23 MB
STAR
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52.26 MB
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1.79 MB
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featureCounts
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4.42 MB
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374.24 kB
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1011.32 kB
Samtools idxstats
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5.89 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
8.88 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.89 kB
STAR
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
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48.08 MB
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4.17 MB
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20.02 kB
BBDuk (single-end)
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364.65 MB
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965 B
fastqc
Directory
STAR
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4.64 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.69 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam
2.15 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_SJ.out.tab
41.61 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
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359 B
ZAG402A77_S49_L003_R1_001_preprocessed_fpkm.tab.gz
350.09 kB
ZAG402A77_S49_L003_R1_001_preprocessed_expressions.txt.gz
972.98 kB
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225.37 kB
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4.42 MB
ZAG402A77_S49_L003_R1_001_preprocessed_rc.tab.gz
236.02 kB
ZAG402A77_S49_L003_R1_001_preprocessed_tpm.tab.gz
350.00 kB
STAR
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Subsample FASTQ (single-end)
fastqc
Directory
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46.34 MB
BBDuk (single-end)
fastqc
Directory
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ZAG402A62_S34_L003_R1_001_preprocessed.fastq.gz
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BBDuk (single-end)
fastqc
Directory
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198.15 MB
ZAG402A55_S27_L003_R1_001_statistics.txt.gz
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STAR
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featureCounts
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Subsample FASTQ (single-end)
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fastqc
Directory
STAR
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ZAG402A62_S34_L003_R1_001_preprocessed_SJ.out.tab
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ZAG402A62_S34_L003_R1_001_preprocessed.bam
513.72 MB
ZAG402A62_S34_L003_R1_001_preprocessed_stats.txt
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STAR
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ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam
3.35 MB
STAR
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam
2.03 MB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.68 MB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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featureCounts
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4.42 MB
featureCounts_rc.txt.summary
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Subsample FASTQ (single-end)
fastqc
Directory
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50.40 MB
STAR
ZAG402A93_S65_L003_R1_001_preprocessed_stats.txt
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ZAG402A93_S65_L003_R1_001_preprocessed.bam
729.27 MB
ZAG402A93_S65_L003_R1_001_preprocessed.bam.bai
2.08 MB
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STAR
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_stats.txt
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3.29 MB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_SJ.out.tab
17.82 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
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QoRTs QC
qorts_report.zip
10.06 MB
qorts_output
Directory
BBDuk (single-end)
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Directory
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ZAG402A58_S30_L003_R1_001_statistics.txt.gz
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STAR
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ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_stats.txt
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51.11 MB
Samtools idxstats
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MultiQC
multiqc_data
Directory
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Samtools idxstats
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5.92 kB
Samtools idxstats
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5.92 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.73 MB
MultiQC
multiqc_data
Directory
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1.23 MB
featureCounts
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359 B
ZAG402A81_S53_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
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223.74 kB
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QoRTs QC
qorts_report.zip
9.99 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
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1.23 MB
Samtools idxstats
idxstat_report.txt
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QoRTs QC
qorts_output
Directory
qorts_report.zip
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BBDuk (single-end)
fastqc
Directory
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238.34 MB
ZAG402A53_S25_L003_R1_001_statistics.txt.gz
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featureCounts
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STAR
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ZAG402A66_S38_L003_R1_001_preprocessed.bam
371.41 MB
ZAG402A66_S38_L003_R1_001_preprocessed_SJ.out.tab
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ZAG402A66_S38_L003_R1_001_preprocessed_stats.txt
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Samtools idxstats
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MultiQC
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Directory
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STAR
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.21 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_stats.txt
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2.76 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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Samtools idxstats
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QoRTs QC
qorts_output
Directory
qorts_report.zip
9.36 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam.bai
3.95 kB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
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ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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STAR
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ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam
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ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_stats.txt
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Subsample FASTQ (single-end)
fastqc
Directory
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46.45 MB
BBDuk (single-end)
fastqc
Directory
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224.04 MB
ZAG402A83_S55_L003_R1_001_statistics.txt.gz
771 B
STAR
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ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_stats.txt
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1.51 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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BBDuk (single-end)
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Directory
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ZAG402A57_S29_L003_R1_001_statistics.txt.gz
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BBDuk (single-end)
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fastqc
Directory
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BBDuk (single-end)
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fastqc
Directory
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BBDuk (single-end)
fastqc
Directory
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295.06 MB
ZAG402A58_S30_L003_R1_001_statistics.txt.gz
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featureCounts
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4.42 MB
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BBDuk (single-end)
fastqc
Directory
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315.99 MB
ZAG402A62_S34_L003_R1_001_statistics.txt.gz
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BBDuk (single-end)
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fastqc
Directory
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BBDuk (single-end)
fastqc
Directory
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323.77 MB
ZAG402A63_S35_L003_R1_001_statistics.txt.gz
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featureCounts
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4.42 MB
featureCounts_rc.txt.summary
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featureCounts
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Directory
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BBDuk (single-end)
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fastqc
Directory
STAR
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ZAG402A54_S26_L003_R1_001_preprocessed.bam
271.38 MB
ZAG402A54_S26_L003_R1_001_preprocessed.bam.bai
3.67 MB
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STAR
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3.48 MB
BBDuk (single-end)
fastqc
Directory
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482 B
ZAG402A60_S32_L003_R1_001_preprocessed.fastq.gz
341.80 MB
STAR
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1.97 MB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam.bai
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50.34 MB
STAR
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ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam.bai
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STAR
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ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_stats.txt
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BBDuk (single-end)
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fastqc
Directory
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BBDuk (single-end)
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Directory
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ZAG402A69_S41_L003_R1_001_statistics.txt.gz
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BBDuk (single-end)
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fastqc
Directory
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325.04 MB
STAR
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49.45 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam
2.26 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam.bai
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BBDuk (single-end)
fastqc
Directory
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306.61 MB
ZAG402A61_S33_L003_R1_001_statistics.txt.gz
471 B
STAR
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44.86 MB
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336 B
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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featureCounts
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359 B
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4.42 MB
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BBDuk (single-end)
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336.97 MB
fastqc
Directory
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STAR
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50.55 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam
1.82 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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BBDuk (single-end)
fastqc
Directory
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461.22 MB
ZAG402A72_S44_L003_R1_001_statistics.txt.gz
487 B
BBDuk (single-end)
fastqc
Directory
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240.78 MB
ZAG402A66_S38_L003_R1_001_statistics.txt.gz
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STAR
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BBDuk (single-end)
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fastqc
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STAR
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BBDuk (single-end)
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Directory
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ZAG402A80_S52_L003_R1_001_preprocessed.fastq.gz
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BBDuk (single-end)
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Directory
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ZAG402A75_S47_L003_R1_001_preprocessed.fastq.gz
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BBDuk (single-end)
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Directory
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ZAG402A73_S45_L003_R1_001_statistics.txt.gz
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STAR
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BBDuk (single-end)
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Directory
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STAR
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BBDuk (single-end)
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Directory
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BBDuk (single-end)
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BBDuk (single-end)
fastqc
Directory
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BBDuk (single-end)
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fastqc
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BBDuk (single-end)
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fastqc
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MultiQC
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Directory
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featureCounts
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4.42 MB
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BBDuk (single-end)
fastqc
Directory
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207.07 MB
ZAG402A78_S50_L003_R1_001_statistics.txt.gz
470 B
STAR
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STAR
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STAR
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BBDuk (single-end)
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STAR
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BBDuk (single-end)
fastqc
Directory
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Subsample FASTQ (single-end)
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fastqc
Directory
STAR
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21.88 MB
ZAG402A55_S27_L003_R1_001_preprocessed.bam.bai
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featureCounts
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BBDuk (single-end)
fastqc
Directory
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ZAG402A65_S37_L003_R1_001_statistics.txt.gz
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STAR
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ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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STAR
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426.92 MB
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3.14 MB
ZAG402A52_S24_L003_R1_001_preprocessed.bam.bai
3.84 MB
BBDuk (single-end)
fastqc
Directory
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ZAG402A82_S54_L003_R1_001_preprocessed.fastq.gz
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MultiQC
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Directory
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featureCounts
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359 B
ZAG402A95_S67_L003_R1_001_preprocessed_fpkm.tab.gz
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4.42 MB
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BBDuk (single-end)
fastqc
Directory
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ZAG402A87_S59_L003_R1_001_preprocessed.fastq.gz
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BBDuk (single-end)
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279.97 MB
fastqc
Directory
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BBDuk (single-end)
fastqc
Directory
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ZAG402A87_S59_L003_R1_001_preprocessed.fastq.gz
322.15 MB
STAR
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ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.bam
1.71 MB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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BBDuk (single-end)
fastqc
Directory
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ZAG402A85_S57_L003_R1_001_preprocessed.fastq.gz
431.12 MB
STAR
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ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam
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47.51 MB
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STAR
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam
1.69 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_SJ.out.tab
33.25 kB
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ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_stats.txt
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STAR
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ZAG402A77_S49_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
22.69 MB
ZAG402A77_S49_L003_R1_001_preprocessed_stats.txt
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ZAG402A77_S49_L003_R1_001_preprocessed.bam
436.90 MB
ZAG402A77_S49_L003_R1_001_preprocessed_SJ.out.tab
3.77 MB
featureCounts
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241.40 kB
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4.43 MB
ZAG402A86_S58_L003_R1_001_preprocessed_tpm.tab.gz
372.02 kB
ZAG402A86_S58_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
ZAG402A86_S58_L003_R1_001_preprocessed_cpm.tab.gz
243.06 kB
STAR
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336 B
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11.13 kB
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2.21 MB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.20 MB
STAR
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3.83 kB
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50.29 MB
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1.80 MB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_stats.txt
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STAR
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24.76 MB
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3.33 MB
ZAG402A95_S67_L003_R1_001_preprocessed.bam.bai
2.74 MB
ZAG402A95_S67_L003_R1_001_preprocessed.bam
431.30 MB
featureCounts
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4.43 MB
ZAG402A92_S64_L003_R1_001_preprocessed_tpm.tab.gz
371.38 kB
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239.24 kB
ZAG402A92_S64_L003_R1_001_preprocessed_fpkm.tab.gz
371.61 kB
featureCounts_rc.txt.summary
359 B
ZAG402A92_S64_L003_R1_001_preprocessed_cpm.tab.gz
234.73 kB
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1.01 MB
STAR
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336 B
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
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1014.77 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.79 MB
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5.83 kB
STAR
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48.61 MB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam.bai
4.79 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_SJ.out.tab
54.47 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam
2.43 MB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
BBDuk (single-end)
fastqc
Directory
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276.85 MB
ZAG402A63_S35_L003_R1_001_statistics.txt.gz
863 B
featureCounts
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359 B
ZAG402A90_S62_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
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236.00 kB
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347.16 kB
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346.96 kB
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225.69 kB
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966.87 kB
Subsample FASTQ (single-end)
fastqc
Directory
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45.99 MB
featureCounts
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358 B
ZAG402A49_S21_L003_R1_001_preprocessed_fpkm.tab.gz
366.89 kB
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234.85 kB
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220.95 kB
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366.86 kB
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998.02 kB
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4.42 MB
STAR
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.55 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam
2.12 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
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11.17 kB
STAR
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam
3.26 MB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.16 MB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_SJ.out.tab
16.94 kB
STAR
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.25 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam
2.43 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam.bai
4.89 kB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_SJ.out.tab
51.46 kB
featureCounts
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358 B
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ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.bam
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ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam
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BBDuk (single-end)
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ZAG402A68_S40_L003_R1_001_statistics.txt.gz
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ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam
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ZAG402A71_S43_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
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ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam
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ZAG402A92_S64_L003_R1_001_statistics.txt.gz
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ZAG402A61_S33_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
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ZAG402A61_S33_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A94_S66_L003_R1_001_preprocessed.bam.bai
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featureCounts
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ZAG402A64_S36_L003_R1_001_statistics.txt.gz
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ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
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ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A79_S51_L003_R1_001_preprocessed_stats.txt
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ZAG402A95_S67_L003_R1_001_preprocessed.fastq.gz
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ZAG402A86_S58_L003_R1_001_preprocessed_SJ.out.tab
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ZAG402A73_S45_L003_R1_001_preprocessed.fastq.gz
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ZAG402A78_S50_L003_R1_001_preprocessed.bam.bai
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ZAG402A78_S50_L003_R1_001_preprocessed_SJ.out.tab
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ZAG402A78_S50_L003_R1_001_preprocessed.bam
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ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.fastq.gz
46.79 MB
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ZAG402A88_S60_L003_R1_001_preprocessed.bam.bai
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ZAG402A88_S60_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
25.20 MB
ZAG402A88_S60_L003_R1_001_preprocessed_stats.txt
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ZAG402A88_S60_L003_R1_001_preprocessed.bam
408.99 MB
ZAG402A88_S60_L003_R1_001_preprocessed_SJ.out.tab
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Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A67_S39_L003_R1_001_preprocessed_downsampled.fastq.gz
47.45 MB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A69_S41_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
results
Directory
ZAG402A69_S41_L003_R1_001_preprocessed_rc.tab.gz
231.35 kB
ZAG402A69_S41_L003_R1_001_preprocessed_fpkm.tab.gz
336.08 kB
ZAG402A69_S41_L003_R1_001_preprocessed_cpm.tab.gz
212.06 kB
ZAG402A69_S41_L003_R1_001_preprocessed_expressions.txt.gz
918.14 kB
ZAG402A69_S41_L003_R1_001_preprocessed_tpm.tab.gz
336.28 kB
BBDuk (single-end)
ZAG402A75_S47_L003_R1_001_preprocessed.fastq.gz
294.24 MB
fastqc
Directory
ZAG402A75_S47_L003_R1_001_statistics.txt.gz
849 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.fastq.gz
47.49 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.82 MB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam
2.44 MB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.56 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A94_S66_L003_R1_001_preprocessed.fastq.gz
459.91 MB
ZAG402A94_S66_L003_R1_001_statistics.txt.gz
916 B
STAR
ZAG402A82_S54_L003_R1_001_preprocessed.bam
355.43 MB
ZAG402A82_S54_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
23.16 MB
ZAG402A82_S54_L003_R1_001_preprocessed.bam.bai
2.74 MB
ZAG402A82_S54_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A82_S54_L003_R1_001_preprocessed_SJ.out.tab
2.48 MB
STAR
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam.bai
3.59 kB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam
1.91 MB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.80 MB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_SJ.out.tab
47.51 kB
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A56_S28_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A56_S28_L003_R1_001_preprocessed_rc.tab.gz
232.43 kB
results
Directory
ZAG402A56_S28_L003_R1_001_preprocessed_fpkm.tab.gz
363.54 kB
ZAG402A56_S28_L003_R1_001_preprocessed_tpm.tab.gz
363.95 kB
ZAG402A56_S28_L003_R1_001_preprocessed_cpm.tab.gz
213.19 kB
ZAG402A56_S28_L003_R1_001_preprocessed_expressions.txt.gz
979.09 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A74_S46_L003_R1_001_statistics.txt.gz
836 B
ZAG402A74_S46_L003_R1_001_preprocessed.fastq.gz
260.74 MB
BBDuk (single-end)
ZAG402A96_S68_L003_R1_001_statistics.txt.gz
960 B
fastqc
Directory
ZAG402A96_S68_L003_R1_001_preprocessed.fastq.gz
518.00 MB
STAR
ZAG402A73_S45_L003_R1_001_preprocessed.bam
420.00 MB
ZAG402A73_S45_L003_R1_001_preprocessed.bam.bai
2.76 MB
ZAG402A73_S45_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A73_S45_L003_R1_001_preprocessed_SJ.out.tab
2.59 MB
ZAG402A73_S45_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.35 MB
STAR
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam
1.96 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.18 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.70 MB
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
29.92 MB
ZAG402A51_S23_L003_R1_001_preprocessed.bam
525.73 MB
ZAG402A51_S23_L003_R1_001_preprocessed.bam.bai
2.82 MB
ZAG402A51_S23_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A51_S23_L003_R1_001_preprocessed_SJ.out.tab
3.00 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.fastq.gz
48.65 MB
featureCounts
ZAG402A71_S43_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
results
Directory
ZAG402A71_S43_L003_R1_001_preprocessed_fpkm.tab.gz
351.89 kB
featureCounts_rc.txt.summary
358 B
ZAG402A71_S43_L003_R1_001_preprocessed_rc.tab.gz
234.16 kB
ZAG402A71_S43_L003_R1_001_preprocessed_tpm.tab.gz
352.30 kB
ZAG402A71_S43_L003_R1_001_preprocessed_expressions.txt.gz
963.21 kB
ZAG402A71_S43_L003_R1_001_preprocessed_cpm.tab.gz
219.08 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.fastq.gz
45.40 MB
STAR
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam.bai
5.07 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_SJ.out.tab
63.71 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam
2.70 MB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.70 MB
STAR
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam.bai
5.05 kB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam
2.64 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.09 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_SJ.out.tab
59.48 kB
STAR
ZAG402A81_S53_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.28 MB
ZAG402A81_S53_L003_R1_001_preprocessed.bam
452.65 MB
ZAG402A81_S53_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A81_S53_L003_R1_001_preprocessed.bam.bai
2.84 MB
ZAG402A81_S53_L003_R1_001_preprocessed_SJ.out.tab
3.07 MB
BBDuk (single-end)
ZAG402A77_S49_L003_R1_001_preprocessed.fastq.gz
251.20 MB
fastqc
Directory
ZAG402A77_S49_L003_R1_001_statistics.txt.gz
782 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.fastq.gz
46.62 MB
STAR
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam.bai
3.86 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.35 MB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam
2.07 MB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_SJ.out.tab
49.30 kB
STAR
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.49 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam
2.68 MB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_SJ.out.tab
66.22 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A51_S23_L003_R1_001_preprocessed_downsampled.bam.bai
5.05 kB
featureCounts
ZAG402A65_S37_L003_R1_001_preprocessed_rc.tab.gz
235.71 kB
ZAG402A65_S37_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
358 B
ZAG402A65_S37_L003_R1_001_preprocessed_fpkm.tab.gz
377.17 kB
results
Directory
ZAG402A65_S37_L003_R1_001_preprocessed_cpm.tab.gz
222.29 kB
ZAG402A65_S37_L003_R1_001_preprocessed_expressions.txt.gz
1.00 MB
ZAG402A65_S37_L003_R1_001_preprocessed_tpm.tab.gz
377.32 kB
BBDuk (single-end)
ZAG402A55_S27_L003_R1_001_preprocessed.fastq.gz
169.98 MB
fastqc
Directory
ZAG402A55_S27_L003_R1_001_statistics.txt.gz
729 B
STAR
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam.bai
5.16 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam
2.79 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_SJ.out.tab
62.49 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.38 MB
STAR
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.75 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam
2.53 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.69 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam
3.28 MB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_SJ.out.tab
18.23 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.37 MB
STAR
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.23 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam.bai
4.73 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam
2.52 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_SJ.out.tab
55.33 kB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.22 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.40 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam
2.35 MB
STAR
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.65 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam
1.88 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_SJ.out.tab
8.43 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.fastq.gz
45.97 MB
STAR
ZAG402A91_S63_L003_R1_001_preprocessed.bam
513.55 MB
ZAG402A91_S63_L003_R1_001_preprocessed.bam.bai
2.78 MB
ZAG402A91_S63_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
32.04 MB
ZAG402A91_S63_L003_R1_001_preprocessed_SJ.out.tab
3.40 MB
ZAG402A91_S63_L003_R1_001_preprocessed_stats.txt
1.81 kB
featureCounts
ZAG402A73_S45_L003_R1_001_preprocessed_rc.tab.gz
232.76 kB
ZAG402A73_S45_L003_R1_001_preprocessed_tpm.tab.gz
332.10 kB
ZAG402A73_S45_L003_R1_001_preprocessed_cpm.tab.gz
216.59 kB
featureCounts_rc.txt.summary
358 B
ZAG402A73_S45_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A73_S45_L003_R1_001_preprocessed_expressions.txt.gz
917.79 kB
results
Directory
ZAG402A73_S45_L003_R1_001_preprocessed_fpkm.tab.gz
331.53 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.fastq.gz
44.78 MB
STAR
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam
2.65 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.69 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam.bai
4.94 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_SJ.out.tab
61.10 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
357 B
ZAG402A62_S34_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A62_S34_L003_R1_001_preprocessed_tpm.tab.gz
424.63 kB
ZAG402A62_S34_L003_R1_001_preprocessed_cpm.tab.gz
220.94 kB
ZAG402A62_S34_L003_R1_001_preprocessed_fpkm.tab.gz
424.54 kB
ZAG402A62_S34_L003_R1_001_preprocessed_expressions.txt.gz
1.10 MB
ZAG402A62_S34_L003_R1_001_preprocessed_rc.tab.gz
236.67 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.fastq.gz
47.16 MB
BBDuk (single-end)
ZAG402A79_S51_L003_R1_001_statistics.txt.gz
757 B
fastqc
Directory
ZAG402A79_S51_L003_R1_001_preprocessed.fastq.gz
186.56 MB
Subsample FASTQ (single-end)
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.fastq.gz
48.94 MB
fastqc
Directory
Subsample FASTQ (single-end)
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.fastq.gz
45.74 MB
fastqc
Directory
STAR
ZAG402A50_S22_L003_R1_001_preprocessed.bam
431.12 MB
ZAG402A50_S22_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
22.36 MB
ZAG402A50_S22_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A50_S22_L003_R1_001_preprocessed_SJ.out.tab
2.77 MB
ZAG402A50_S22_L003_R1_001_preprocessed.bam.bai
2.66 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
BBDuk (single-end)
fastqc
Directory
ZAG402A78_S50_L003_R1_001_statistics.txt.gz
716 B
ZAG402A78_S50_L003_R1_001_preprocessed.fastq.gz
176.91 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.fastq.gz
47.85 MB
featureCounts
ZAG402A57_S29_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A57_S29_L003_R1_001_preprocessed_tpm.tab.gz
348.43 kB
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A57_S29_L003_R1_001_preprocessed_rc.tab.gz
233.26 kB
ZAG402A57_S29_L003_R1_001_preprocessed_fpkm.tab.gz
347.66 kB
ZAG402A57_S29_L003_R1_001_preprocessed_cpm.tab.gz
216.47 kB
ZAG402A57_S29_L003_R1_001_preprocessed_expressions.txt.gz
950.43 kB
STAR
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.74 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam
1.63 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam.bai
3.14 kB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_SJ.out.tab
41.39 kB
STAR
ZAG402A75_S47_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A75_S47_L003_R1_001_preprocessed.bam.bai
2.78 MB
ZAG402A75_S47_L003_R1_001_preprocessed.bam
481.58 MB
ZAG402A75_S47_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.59 MB
ZAG402A75_S47_L003_R1_001_preprocessed_SJ.out.tab
3.68 MB
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
42.68 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam
1.56 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_SJ.out.tab
7.94 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A81_S53_L003_R1_001_statistics.txt.gz
867 B
ZAG402A81_S53_L003_R1_001_preprocessed.fastq.gz
274.85 MB
STAR
ZAG402A69_S41_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
15.84 MB
ZAG402A69_S41_L003_R1_001_preprocessed.bam.bai
2.65 MB
ZAG402A69_S41_L003_R1_001_preprocessed.bam
282.18 MB
ZAG402A69_S41_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A69_S41_L003_R1_001_preprocessed_SJ.out.tab
2.56 MB
STAR
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.92 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam
2.36 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.34 kB
STAR
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
36.76 MB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_SJ.out.tab
20.83 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam
4.02 MB
Samtools idxstats
idxstat_report.txt
5.87 kB
STAR
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.44 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.42 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam
2.00 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A49_S21_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.34 MB
ZAG402A49_S21_L003_R1_001_preprocessed.bam.bai
2.85 MB
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STAR
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Subsample FASTQ (single-end)
fastqc
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47.89 MB
featureCounts
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BBDuk (single-end)
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fastqc
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BBDuk (single-end)
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MultiQC
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STAR
ZAG402A52_S24_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
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Subsample FASTQ (single-end)
fastqc
Directory
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48.13 MB
featureCounts
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MultiQC
multiqc_data
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featureCounts
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Subsample FASTQ (single-end)
fastqc
Directory
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STAR
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2.46 MB
MultiQC
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featureCounts
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BBDuk (single-end)
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2.87 MB
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Samtools idxstats
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Subsample FASTQ (single-end)
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fastqc
Directory
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ZAG402A90_S62_L003_R1_001_preprocessed.bam
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ZAG402A90_S62_L003_R1_001_preprocessed_SJ.out.tab
3.37 MB
MultiQC
multiqc_data
Directory
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1.20 MB
Subsample FASTQ (single-end)
fastqc
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44.20 MB
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ZAG402A74_S46_L003_R1_001_preprocessed.bam.bai
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462.78 MB
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27.19 MB
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ZAG402A74_S46_L003_R1_001_preprocessed_stats.txt
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STAR
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29.61 MB
ZAG402A68_S40_L003_R1_001_preprocessed.bam
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ZAG402A68_S40_L003_R1_001_preprocessed_stats.txt
1.81 kB
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3.08 MB
Subsample FASTQ (single-end)
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.fastq.gz
46.21 MB
fastqc
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Subsample FASTQ (single-end)
fastqc
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BBDuk (single-end)
fastqc
Directory
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ZAG402A53_S25_L003_R1_001_preprocessed.fastq.gz
205.90 MB
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ZAG402A53_S25_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
18.27 MB
ZAG402A53_S25_L003_R1_001_preprocessed.bam
362.08 MB
ZAG402A53_S25_L003_R1_001_preprocessed_stats.txt
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STAR
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3.32 MB
ZAG402A83_S55_L003_R1_001_preprocessed.bam.bai
2.68 MB
ZAG402A83_S55_L003_R1_001_preprocessed.bam
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Subsample FASTQ (single-end)
fastqc
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40.10 MB
STAR
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam
3.07 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.86 kB
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44.83 MB
Subsample FASTQ (single-end)
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.fastq.gz
47.40 MB
fastqc
Directory
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ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.26 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam.bai
5.02 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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2.64 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_stats.txt
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featureCounts
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results
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4.42 MB
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featureCounts
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358 B
ZAG402A82_S54_L003_R1_001_preprocessed_rc.tab.gz
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328.32 kB
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216.38 kB
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4.42 MB
ZAG402A82_S54_L003_R1_001_preprocessed_expressions.txt.gz
911.69 kB
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STAR
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46.24 MB
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1.79 kB
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ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.bam
2.11 MB
STAR
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.63 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam
2.03 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
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47.14 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam
2.74 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_SJ.out.tab
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ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam
3.25 MB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
42.84 MB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_SJ.out.tab
20.28 kB
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ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.74 MB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_SJ.out.tab
41.11 kB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam
1.56 MB
featureCounts
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4.42 MB
ZAG402A91_S63_L003_R1_001_preprocessed_rc.tab.gz
236.97 kB
featureCounts_rc.txt.summary
359 B
ZAG402A91_S63_L003_R1_001_preprocessed_fpkm.tab.gz
351.32 kB
results
Directory
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978.09 kB
ZAG402A91_S63_L003_R1_001_preprocessed_tpm.tab.gz
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STAR
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47.64 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_stats.txt
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ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam
2.14 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam.bai
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ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam
2.68 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.37 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_SJ.out.tab
15.90 kB
featureCounts
ZAG402A49_S21_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A49_S21_L003_R1_001_preprocessed_rc.tab.gz
234.70 kB
featureCounts_rc.txt.summary
358 B
ZAG402A49_S21_L003_R1_001_preprocessed_fpkm.tab.gz
368.60 kB
ZAG402A49_S21_L003_R1_001_preprocessed_tpm.tab.gz
369.04 kB
ZAG402A49_S21_L003_R1_001_preprocessed_cpm.tab.gz
220.08 kB
ZAG402A49_S21_L003_R1_001_preprocessed_expressions.txt.gz
1002.06 kB
results
Directory
STAR
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.70 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam
2.27 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.53 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam.bai
3.70 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.67 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.34 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam
1.99 MB
featureCounts
ZAG402A85_S57_L003_R1_001_preprocessed_rc.tab.gz
239.72 kB
featureCounts_rc.txt.summary
359 B
ZAG402A85_S57_L003_R1_001_preprocessed_tpm.tab.gz
367.14 kB
ZAG402A85_S57_L003_R1_001_preprocessed_fpkm.tab.gz
367.50 kB
results
Directory
ZAG402A85_S57_L003_R1_001_preprocessed_cpm.tab.gz
237.67 kB
ZAG402A85_S57_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A85_S57_L003_R1_001_preprocessed_expressions.txt.gz
1.00 MB
STAR
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.36 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam
2.10 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.28 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.28 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_SJ.out.tab
45.78 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam.bai
3.42 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam
1.81 MB
featureCounts
ZAG402A83_S55_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
359 B
ZAG402A83_S55_L003_R1_001_preprocessed_fpkm.tab.gz
342.27 kB
ZAG402A83_S55_L003_R1_001_preprocessed_rc.tab.gz
234.49 kB
results
Directory
ZAG402A83_S55_L003_R1_001_preprocessed_cpm.tab.gz
221.26 kB
ZAG402A83_S55_L003_R1_001_preprocessed_expressions.txt.gz
948.82 kB
ZAG402A83_S55_L003_R1_001_preprocessed_tpm.tab.gz
342.74 kB
STAR
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam.bai
3.31 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam
1.55 MB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_SJ.out.tab
39.04 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.88 MB
STAR
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.11 MB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam
3.07 MB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_SJ.out.tab
22.05 kB

15. Chromatin, XRN2, siMATR3, aux

QoRTs QC
qorts_output
Directory
qorts_report.zip
9.34 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A63_S35_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A63_S35_L003_R1_001_preprocessed_rc.tab.gz
235.12 kB
ZAG402A63_S35_L003_R1_001_preprocessed_fpkm.tab.gz
377.43 kB
ZAG402A63_S35_L003_R1_001_preprocessed_tpm.tab.gz
377.47 kB
ZAG402A63_S35_L003_R1_001_preprocessed_expressions.txt.gz
1020.60 kB
ZAG402A63_S35_L003_R1_001_preprocessed_cpm.tab.gz
219.70 kB
Samtools idxstats
idxstat_report.txt
5.93 kB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
Samtools idxstats
idxstat_report.txt
5.95 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A63_S35_L003_R1_001_preprocessed.bam.bai
3.58 MB
ZAG402A63_S35_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
35.80 MB
ZAG402A63_S35_L003_R1_001_preprocessed.bam
526.39 MB
ZAG402A63_S35_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A63_S35_L003_R1_001_preprocessed_SJ.out.tab
3.53 MB
FASTQ file (single-end)
ZAG402A63_S35_L003_R1_001.fastq.gz
396.67 MB
fastqc
Directory
ZAG402A63_S35_L003_R1_001_fastqc.zip
442.53 kB
stderr.txt
1.09 kB
STAR
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam
2.61 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.94 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_SJ.out.tab
53.02 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam.bai
5.20 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A63_S35_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A63_S35_L003_R1_001_preprocessed_tpm.tab.gz
378.29 kB
ZAG402A63_S35_L003_R1_001_preprocessed_rc.tab.gz
235.45 kB
ZAG402A63_S35_L003_R1_001_preprocessed_fpkm.tab.gz
377.84 kB
ZAG402A63_S35_L003_R1_001_preprocessed_expressions.txt.gz
1023.56 kB
ZAG402A63_S35_L003_R1_001_preprocessed_cpm.tab.gz
221.14 kB
Subsample FASTQ (single-end)
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.fastq.gz
51.49 MB
fastqc
Directory
STAR
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.38 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_SJ.out.tab
10.53 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam
2.04 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A63_S35_L003_R1_001_preprocessed.fastq.gz
323.77 MB
ZAG402A63_S35_L003_R1_001_statistics.txt.gz
482 B
BBDuk (single-end)
fastqc
Directory
ZAG402A63_S35_L003_R1_001_preprocessed.fastq.gz
276.85 MB
ZAG402A63_S35_L003_R1_001_statistics.txt.gz
863 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.fastq.gz
47.40 MB
STAR
ZAG402A63_S35_L003_R1_001_preprocessed.bam.bai
2.76 MB
ZAG402A63_S35_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A63_S35_L003_R1_001_preprocessed_SJ.out.tab
2.92 MB
ZAG402A63_S35_L003_R1_001_preprocessed.bam
481.11 MB
ZAG402A63_S35_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.80 MB
STAR
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.44 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.42 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam
2.00 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.86 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled_SJ.out.tab
67.83 kB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam
2.87 MB
ZAG402A63_S35_L003_R1_001_preprocessed_downsampled.bam.bai
5.27 kB

17. Chromatin, XRN2, siMATR3, dmso

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A65_S37_L003_R1_001_fastqc.zip
441.29 kB
ZAG402A65_S37_L003_R1_001.fastq.gz
420.71 MB
stderr.txt
1.09 kB
Samtools idxstats
idxstat_report.txt
5.93 kB
STAR
ZAG402A65_S37_L003_R1_001_preprocessed.bam.bai
2.76 MB
ZAG402A65_S37_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
29.58 MB
ZAG402A65_S37_L003_R1_001_preprocessed.bam
505.16 MB
ZAG402A65_S37_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A65_S37_L003_R1_001_preprocessed_SJ.out.tab
3.06 MB
STAR
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.95 MB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam
1.88 MB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_SJ.out.tab
10.78 kB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
Samtools idxstats
idxstat_report.txt
5.94 kB
QoRTs QC
qorts_report.zip
9.40 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A65_S37_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
39.31 MB
ZAG402A65_S37_L003_R1_001_preprocessed.bam.bai
3.55 MB
ZAG402A65_S37_L003_R1_001_preprocessed.bam
555.30 MB
ZAG402A65_S37_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A65_S37_L003_R1_001_preprocessed_SJ.out.tab
3.72 MB
STAR
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.49 MB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam.bai
4.65 kB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.83 kB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam
2.40 MB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
ZAG402A65_S37_L003_R1_001_preprocessed_rc.tab.gz
236.04 kB
featureCounts_rc.txt.summary
358 B
ZAG402A65_S37_L003_R1_001_preprocessed_cpm.tab.gz
222.19 kB
ZAG402A65_S37_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A65_S37_L003_R1_001_preprocessed_expressions.txt.gz
1.00 MB
ZAG402A65_S37_L003_R1_001_preprocessed_tpm.tab.gz
377.92 kB
ZAG402A65_S37_L003_R1_001_preprocessed_fpkm.tab.gz
377.68 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.fastq.gz
49.88 MB
BBDuk (single-end)
ZAG402A65_S37_L003_R1_001_preprocessed.fastq.gz
336.97 MB
fastqc
Directory
ZAG402A65_S37_L003_R1_001_statistics.txt.gz
489 B
BBDuk (single-end)
fastqc
Directory
ZAG402A65_S37_L003_R1_001_preprocessed.fastq.gz
288.01 MB
ZAG402A65_S37_L003_R1_001_statistics.txt.gz
780 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.fastq.gz
46.09 MB
STAR
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam
2.55 MB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam.bai
4.91 kB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_SJ.out.tab
62.56 kB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.71 MB
STAR
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.28 MB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled.bam
1.87 MB
ZAG402A65_S37_L003_R1_001_preprocessed_downsampled_SJ.out.tab
9.57 kB
featureCounts
ZAG402A65_S37_L003_R1_001_preprocessed_rc.tab.gz
235.71 kB
ZAG402A65_S37_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
358 B
ZAG402A65_S37_L003_R1_001_preprocessed_fpkm.tab.gz
377.17 kB
results
Directory
ZAG402A65_S37_L003_R1_001_preprocessed_cpm.tab.gz
222.29 kB
ZAG402A65_S37_L003_R1_001_preprocessed_expressions.txt.gz
1.00 MB
ZAG402A65_S37_L003_R1_001_preprocessed_tpm.tab.gz
377.32 kB

23. Chromatin, XRN2, siMATR3/EXOSC3, aux

Samtools idxstats
idxstat_report.txt
5.93 kB
Samtools idxstats
idxstat_report.txt
5.90 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A71_S43_L003_R1_001_statistics.txt.gz
840 B
ZAG402A71_S43_L003_R1_001_preprocessed.fastq.gz
295.66 MB
STAR
ZAG402A71_S43_L003_R1_001_preprocessed.bam.bai
3.71 MB
ZAG402A71_S43_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
40.33 MB
ZAG402A71_S43_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A71_S43_L003_R1_001_preprocessed_SJ.out.tab
3.61 MB
ZAG402A71_S43_L003_R1_001_preprocessed.bam
559.59 MB
STAR
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam
2.36 MB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.32 kB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.23 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A71_S43_L003_R1_001.fastq.gz
429.13 MB
stderr.txt
1.09 kB
ZAG402A71_S43_L003_R1_001_fastqc.zip
441.94 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.fastq.gz
50.26 MB
STAR
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.92 MB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam
2.35 MB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.42 kB
STAR
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam.bai
4.68 kB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.90 MB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam
2.32 MB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.72 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.35 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A71_S43_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A71_S43_L003_R1_001_preprocessed_tpm.tab.gz
353.19 kB
ZAG402A71_S43_L003_R1_001_preprocessed_fpkm.tab.gz
352.95 kB
ZAG402A71_S43_L003_R1_001_preprocessed_rc.tab.gz
234.45 kB
ZAG402A71_S43_L003_R1_001_preprocessed_cpm.tab.gz
219.82 kB
ZAG402A71_S43_L003_R1_001_preprocessed_expressions.txt.gz
966.46 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.fastq.gz
46.45 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A71_S43_L003_R1_001_statistics.txt.gz
480 B
ZAG402A71_S43_L003_R1_001_preprocessed.fastq.gz
345.85 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.11 MB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam
2.45 MB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled.bam.bai
4.71 kB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A71_S43_L003_R1_001_preprocessed_downsampled_SJ.out.tab
55.89 kB
STAR
ZAG402A71_S43_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
30.68 MB
ZAG402A71_S43_L003_R1_001_preprocessed.bam
511.46 MB
ZAG402A71_S43_L003_R1_001_preprocessed.bam.bai
2.84 MB
ZAG402A71_S43_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A71_S43_L003_R1_001_preprocessed_SJ.out.tab
2.90 MB
featureCounts
ZAG402A71_S43_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
results
Directory
ZAG402A71_S43_L003_R1_001_preprocessed_fpkm.tab.gz
351.89 kB
featureCounts_rc.txt.summary
358 B
ZAG402A71_S43_L003_R1_001_preprocessed_rc.tab.gz
234.16 kB
ZAG402A71_S43_L003_R1_001_preprocessed_tpm.tab.gz
352.30 kB
ZAG402A71_S43_L003_R1_001_preprocessed_expressions.txt.gz
963.21 kB
ZAG402A71_S43_L003_R1_001_preprocessed_cpm.tab.gz
219.08 kB

22. Chromatin, XRN2, siMATR3/EXOSC3, aux

Samtools idxstats
idxstat_report.txt
5.91 kB
STAR
ZAG402A70_S42_L003_R1_001_preprocessed.bam
472.72 MB
ZAG402A70_S42_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A70_S42_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.33 MB
ZAG402A70_S42_L003_R1_001_preprocessed_SJ.out.tab
2.86 MB
ZAG402A70_S42_L003_R1_001_preprocessed.bam.bai
2.78 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A70_S42_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A70_S42_L003_R1_001_preprocessed_rc.tab.gz
234.30 kB
ZAG402A70_S42_L003_R1_001_preprocessed_fpkm.tab.gz
373.36 kB
ZAG402A70_S42_L003_R1_001_preprocessed_cpm.tab.gz
218.46 kB
ZAG402A70_S42_L003_R1_001_preprocessed_tpm.tab.gz
373.92 kB
ZAG402A70_S42_L003_R1_001_preprocessed_expressions.txt.gz
1009.99 kB
Subsample FASTQ (single-end)
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.fastq.gz
46.50 MB
fastqc
Directory
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
Samtools idxstats
idxstat_report.txt
5.93 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A70_S42_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
31.43 MB
ZAG402A70_S42_L003_R1_001_preprocessed.bam
518.68 MB
ZAG402A70_S42_L003_R1_001_preprocessed.bam.bai
3.59 MB
ZAG402A70_S42_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A70_S42_L003_R1_001_preprocessed_SJ.out.tab
3.42 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A70_S42_L003_R1_001.fastq.gz
375.47 MB
stderr.txt
1.09 kB
ZAG402A70_S42_L003_R1_001_fastqc.zip
445.09 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.fastq.gz
50.26 MB
QoRTs QC
qorts_report.zip
9.28 MB
qorts_output
Directory
STAR
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.28 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam
1.90 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_SJ.out.tab
9.03 kB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.84 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam
2.42 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam.bai
4.81 kB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.44 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A70_S42_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A70_S42_L003_R1_001_preprocessed_rc.tab.gz
234.66 kB
ZAG402A70_S42_L003_R1_001_preprocessed_cpm.tab.gz
218.80 kB
ZAG402A70_S42_L003_R1_001_preprocessed_fpkm.tab.gz
374.29 kB
ZAG402A70_S42_L003_R1_001_preprocessed_tpm.tab.gz
374.24 kB
ZAG402A70_S42_L003_R1_001_preprocessed_expressions.txt.gz
1011.32 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A70_S42_L003_R1_001_preprocessed.fastq.gz
303.15 MB
ZAG402A70_S42_L003_R1_001_statistics.txt.gz
488 B
BBDuk (single-end)
ZAG402A70_S42_L003_R1_001_statistics.txt.gz
840 B
fastqc
Directory
ZAG402A70_S42_L003_R1_001_preprocessed.fastq.gz
260.60 MB
STAR
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam.bai
5.05 kB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam
2.64 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.09 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_SJ.out.tab
59.48 kB
STAR
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.65 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled.bam
1.88 MB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A70_S42_L003_R1_001_preprocessed_downsampled_SJ.out.tab
8.43 kB

5. Chromatin, TIR1, siMATR3, aux

featureCounts
results
Directory
featureCounts_rc.txt.summary
357 B
ZAG402A53_S25_L003_R1_001_preprocessed_rc.tab.gz
233.55 kB
ZAG402A53_S25_L003_R1_001_preprocessed_fpkm.tab.gz
385.20 kB
ZAG402A53_S25_L003_R1_001_preprocessed_cpm.tab.gz
213.78 kB
ZAG402A53_S25_L003_R1_001_preprocessed_tpm.tab.gz
385.57 kB
ZAG402A53_S25_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A53_S25_L003_R1_001_preprocessed_expressions.txt.gz
1.01 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.93 kB
Samtools idxstats
idxstat_report.txt
5.93 kB
STAR
ZAG402A53_S25_L003_R1_001_preprocessed.bam
382.28 MB
ZAG402A53_S25_L003_R1_001_preprocessed.bam.bai
3.75 MB
ZAG402A53_S25_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
22.75 MB
ZAG402A53_S25_L003_R1_001_preprocessed_SJ.out.tab
2.69 MB
ZAG402A53_S25_L003_R1_001_preprocessed_stats.txt
1.81 kB
STAR
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam
2.55 MB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam.bai
4.85 kB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.73 MB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_SJ.out.tab
59.78 kB
STAR
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.85 MB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam
2.25 MB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam.bai
4.67 kB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_SJ.out.tab
47.59 kB
STAR
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam
2.21 MB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.08 kB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.99 MB
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A53_S25_L003_R1_001_preprocessed_fpkm.tab.gz
383.38 kB
ZAG402A53_S25_L003_R1_001_preprocessed_tpm.tab.gz
384.14 kB
ZAG402A53_S25_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A53_S25_L003_R1_001_preprocessed_cpm.tab.gz
216.17 kB
ZAG402A53_S25_L003_R1_001_preprocessed_expressions.txt.gz
1.00 MB
ZAG402A53_S25_L003_R1_001_preprocessed_rc.tab.gz
233.67 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A53_S25_L003_R1_001.fastq.gz
285.74 MB
stderr.txt
1.09 kB
ZAG402A53_S25_L003_R1_001_fastqc.zip
440.22 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.01 MB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.fastq.gz
53.25 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A53_S25_L003_R1_001_preprocessed.fastq.gz
238.34 MB
ZAG402A53_S25_L003_R1_001_statistics.txt.gz
483 B
STAR
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.bam
2.13 MB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.07 MB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.47 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A53_S25_L003_R1_001_preprocessed_downsampled.fastq.gz
48.13 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A53_S25_L003_R1_001_statistics.txt.gz
801 B
ZAG402A53_S25_L003_R1_001_preprocessed.fastq.gz
205.90 MB
STAR
ZAG402A53_S25_L003_R1_001_preprocessed.bam.bai
2.73 MB
ZAG402A53_S25_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
18.27 MB
ZAG402A53_S25_L003_R1_001_preprocessed.bam
362.08 MB
ZAG402A53_S25_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A53_S25_L003_R1_001_preprocessed_SJ.out.tab
2.31 MB

1. Nucleoplasm, TIR1, siCTRL, aux

Samtools idxstats
idxstat_report.txt
5.90 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.88 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.04 MB
STAR
ZAG402A73_S45_L003_R1_001_preprocessed.bam
438.18 MB
ZAG402A73_S45_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A73_S45_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
35.05 MB
ZAG402A73_S45_L003_R1_001_preprocessed.bam.bai
3.79 MB
ZAG402A73_S45_L003_R1_001_preprocessed_SJ.out.tab
3.18 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A73_S45_L003_R1_001.fastq.gz
339.90 MB
ZAG402A73_S45_L003_R1_001_fastqc.zip
434.39 kB
STAR
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.54 MB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.bam.bai
4.89 kB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_SJ.out.tab
66.23 kB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.bam
2.62 MB
STAR
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.89 MB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.bam
4.42 MB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_SJ.out.tab
21.84 kB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
Subsample FASTQ (single-end)
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.fastq.gz
53.06 MB
fastqc
Directory
STAR
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.59 MB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_SJ.out.tab
52.00 kB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.bam
2.27 MB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.bam.bai
4.85 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
ZAG402A73_S45_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
358 B
ZAG402A73_S45_L003_R1_001_preprocessed_rc.tab.gz
232.86 kB
ZAG402A73_S45_L003_R1_001_preprocessed_expressions.txt.gz
912.38 kB
ZAG402A73_S45_L003_R1_001_preprocessed_fpkm.tab.gz
329.30 kB
ZAG402A73_S45_L003_R1_001_preprocessed_cpm.tab.gz
216.61 kB
ZAG402A73_S45_L003_R1_001_preprocessed_tpm.tab.gz
329.91 kB
STAR
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.19 MB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled_SJ.out.tab
23.60 kB
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.bam
4.32 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A73_S45_L003_R1_001_preprocessed.fastq.gz
280.99 MB
ZAG402A73_S45_L003_R1_001_statistics.txt.gz
486 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A73_S45_L003_R1_001_preprocessed_downsampled.fastq.gz
48.02 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A73_S45_L003_R1_001_statistics.txt.gz
781 B
ZAG402A73_S45_L003_R1_001_preprocessed.fastq.gz
240.75 MB
STAR
ZAG402A73_S45_L003_R1_001_preprocessed.bam
420.00 MB
ZAG402A73_S45_L003_R1_001_preprocessed.bam.bai
2.76 MB
ZAG402A73_S45_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A73_S45_L003_R1_001_preprocessed_SJ.out.tab
2.59 MB
ZAG402A73_S45_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.35 MB
featureCounts
ZAG402A73_S45_L003_R1_001_preprocessed_rc.tab.gz
232.76 kB
ZAG402A73_S45_L003_R1_001_preprocessed_tpm.tab.gz
332.10 kB
ZAG402A73_S45_L003_R1_001_preprocessed_cpm.tab.gz
216.59 kB
featureCounts_rc.txt.summary
358 B
ZAG402A73_S45_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A73_S45_L003_R1_001_preprocessed_expressions.txt.gz
917.79 kB
results
Directory
ZAG402A73_S45_L003_R1_001_preprocessed_fpkm.tab.gz
331.53 kB

15. Nucleoplasm, XRN2, siMATR3, aux

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
featureCounts
ZAG402A87_S59_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A87_S59_L003_R1_001_preprocessed_rc.tab.gz
236.50 kB
ZAG402A87_S59_L003_R1_001_preprocessed_fpkm.tab.gz
351.91 kB
ZAG402A87_S59_L003_R1_001_preprocessed_cpm.tab.gz
226.99 kB
featureCounts_rc.txt.summary
359 B
ZAG402A87_S59_L003_R1_001_preprocessed_tpm.tab.gz
351.72 kB
ZAG402A87_S59_L003_R1_001_preprocessed_expressions.txt.gz
975.27 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
359 B
ZAG402A87_S59_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A87_S59_L003_R1_001_preprocessed_fpkm.tab.gz
350.13 kB
ZAG402A87_S59_L003_R1_001_preprocessed_rc.tab.gz
236.33 kB
ZAG402A87_S59_L003_R1_001_preprocessed_tpm.tab.gz
350.07 kB
ZAG402A87_S59_L003_R1_001_preprocessed_cpm.tab.gz
226.44 kB
ZAG402A87_S59_L003_R1_001_preprocessed_expressions.txt.gz
972.33 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.45 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.91 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.fastq.gz
51.76 MB
STAR
ZAG402A87_S59_L003_R1_001_preprocessed.bam.bai
3.78 MB
ZAG402A87_S59_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A87_S59_L003_R1_001_preprocessed_SJ.out.tab
4.27 MB
ZAG402A87_S59_L003_R1_001_preprocessed.bam
498.79 MB
ZAG402A87_S59_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
36.83 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A87_S59_L003_R1_001_fastqc.zip
444.70 kB
ZAG402A87_S59_L003_R1_001.fastq.gz
396.13 MB
STAR
ZAG402A87_S59_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.15 MB
ZAG402A87_S59_L003_R1_001_preprocessed.bam.bai
2.75 MB
ZAG402A87_S59_L003_R1_001_preprocessed.bam
457.01 MB
ZAG402A87_S59_L003_R1_001_preprocessed_SJ.out.tab
3.60 MB
ZAG402A87_S59_L003_R1_001_preprocessed_stats.txt
1.81 kB
STAR
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.45 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam
2.26 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.18 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.55 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam
1.82 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam.bai
3.87 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_SJ.out.tab
37.81 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A87_S59_L003_R1_001_statistics.txt.gz
869 B
ZAG402A87_S59_L003_R1_001_preprocessed.fastq.gz
272.77 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A87_S59_L003_R1_001_statistics.txt.gz
488 B
ZAG402A87_S59_L003_R1_001_preprocessed.fastq.gz
322.15 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.fastq.gz
47.89 MB
Samtools idxstats
idxstat_report.txt
5.88 kB
STAR
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.70 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam
2.27 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.53 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam.bai
3.70 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.67 MB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.34 kB
ZAG402A87_S59_L003_R1_001_preprocessed_downsampled.bam
1.99 MB

2. Nucleoplasm, TIR1, siCTRL, aux

featureCounts
results
Directory
featureCounts_rc.txt.summary
359 B
ZAG402A74_S46_L003_R1_001_preprocessed_rc.tab.gz
237.55 kB
ZAG402A74_S46_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A74_S46_L003_R1_001_preprocessed_fpkm.tab.gz
357.98 kB
ZAG402A74_S46_L003_R1_001_preprocessed_cpm.tab.gz
231.01 kB
ZAG402A74_S46_L003_R1_001_preprocessed_expressions.txt.gz
995.60 kB
ZAG402A74_S46_L003_R1_001_preprocessed_tpm.tab.gz
357.57 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.fastq.gz
49.64 MB
Samtools idxstats
idxstat_report.txt
5.88 kB
STAR
ZAG402A74_S46_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
36.91 MB
ZAG402A74_S46_L003_R1_001_preprocessed.bam
502.27 MB
ZAG402A74_S46_L003_R1_001_preprocessed.bam.bai
3.67 MB
ZAG402A74_S46_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A74_S46_L003_R1_001_preprocessed_SJ.out.tab
4.60 MB
STAR
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.bam.bai
2.61 kB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.04 MB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.bam
1.40 MB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_SJ.out.tab
37.27 kB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.17 MB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.62 kB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.bam
1.81 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A74_S46_L003_R1_001.fastq.gz
386.49 MB
ZAG402A74_S46_L003_R1_001_fastqc.zip
440.37 kB
stderr.txt
1.09 kB
Samtools idxstats
idxstat_report.txt
5.90 kB
QoRTs QC
qorts_report.zip
9.54 MB
qorts_output
Directory
STAR
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.74 MB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_SJ.out.tab
10.17 kB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.bam
1.80 MB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.bam
1.25 MB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.73 MB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.bam.bai
2.80 kB
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled_SJ.out.tab
27.74 kB
featureCounts
ZAG402A74_S46_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
359 B
ZAG402A74_S46_L003_R1_001_preprocessed_tpm.tab.gz
358.04 kB
ZAG402A74_S46_L003_R1_001_preprocessed_rc.tab.gz
237.65 kB
ZAG402A74_S46_L003_R1_001_preprocessed_fpkm.tab.gz
358.12 kB
ZAG402A74_S46_L003_R1_001_preprocessed_expressions.txt.gz
997.48 kB
ZAG402A74_S46_L003_R1_001_preprocessed_cpm.tab.gz
231.52 kB
BBDuk (single-end)
ZAG402A74_S46_L003_R1_001_statistics.txt.gz
463 B
ZAG402A74_S46_L003_R1_001_preprocessed.fastq.gz
306.42 MB
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A74_S46_L003_R1_001_statistics.txt.gz
836 B
ZAG402A74_S46_L003_R1_001_preprocessed.fastq.gz
260.74 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A74_S46_L003_R1_001_preprocessed_downsampled.fastq.gz
45.97 MB
STAR
ZAG402A74_S46_L003_R1_001_preprocessed.bam.bai
2.80 MB
ZAG402A74_S46_L003_R1_001_preprocessed.bam
462.78 MB
ZAG402A74_S46_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.19 MB
ZAG402A74_S46_L003_R1_001_preprocessed_SJ.out.tab
4.02 MB
ZAG402A74_S46_L003_R1_001_preprocessed_stats.txt
1.81 kB

14. Chromatin, XRN2, siMATR3, aux

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A62_S34_L003_R1_001.fastq.gz
409.02 MB
ZAG402A62_S34_L003_R1_001_fastqc.zip
446.53 kB
QoRTs QC
qorts_report.zip
9.39 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.97 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
41.88 MB
ZAG402A62_S34_L003_R1_001_preprocessed.bam.bai
3.01 MB
ZAG402A62_S34_L003_R1_001_preprocessed.bam
592.05 MB
ZAG402A62_S34_L003_R1_001_preprocessed_SJ.out.tab
3.71 MB
ZAG402A62_S34_L003_R1_001_preprocessed_stats.txt
1.81 kB
Samtools idxstats
idxstat_report.txt
5.94 kB
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.39 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_SJ.out.tab
8.37 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam
1.52 MB
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.67 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam.bai
4.73 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam
2.38 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.20 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A62_S34_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A62_S34_L003_R1_001_preprocessed_fpkm.tab.gz
426.94 kB
ZAG402A62_S34_L003_R1_001_preprocessed_rc.tab.gz
237.14 kB
ZAG402A62_S34_L003_R1_001_preprocessed_tpm.tab.gz
427.50 kB
ZAG402A62_S34_L003_R1_001_preprocessed_cpm.tab.gz
221.87 kB
ZAG402A62_S34_L003_R1_001_preprocessed_expressions.txt.gz
1.11 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.fastq.gz
46.96 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A62_S34_L003_R1_001_statistics.txt.gz
940 B
ZAG402A62_S34_L003_R1_001_preprocessed.fastq.gz
267.75 MB
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
30.21 MB
ZAG402A62_S34_L003_R1_001_preprocessed_SJ.out.tab
3.00 MB
ZAG402A62_S34_L003_R1_001_preprocessed.bam.bai
2.28 MB
ZAG402A62_S34_L003_R1_001_preprocessed.bam
513.72 MB
ZAG402A62_S34_L003_R1_001_preprocessed_stats.txt
1.81 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A62_S34_L003_R1_001_preprocessed.fastq.gz
315.99 MB
ZAG402A62_S34_L003_R1_001_statistics.txt.gz
477 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
357 B
ZAG402A62_S34_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A62_S34_L003_R1_001_preprocessed_tpm.tab.gz
424.63 kB
ZAG402A62_S34_L003_R1_001_preprocessed_cpm.tab.gz
220.94 kB
ZAG402A62_S34_L003_R1_001_preprocessed_fpkm.tab.gz
424.54 kB
ZAG402A62_S34_L003_R1_001_preprocessed_expressions.txt.gz
1.10 MB
ZAG402A62_S34_L003_R1_001_preprocessed_rc.tab.gz
236.67 kB
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
42.68 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam
1.56 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_SJ.out.tab
7.94 kB
STAR
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam
2.54 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
42.90 MB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled_SJ.out.tab
58.27 kB
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.bam.bai
4.66 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A62_S34_L003_R1_001_preprocessed_downsampled.fastq.gz
44.20 MB

16. Chromatin, XRN2, siMATR3, dmso

Samtools idxstats
idxstat_report.txt
5.93 kB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.01 MB
ZAG402A64_S36_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A64_S36_L003_R1_001_preprocessed.bam
504.86 MB
ZAG402A64_S36_L003_R1_001_preprocessed.bam.bai
2.73 MB
ZAG402A64_S36_L003_R1_001_preprocessed_SJ.out.tab
2.96 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.36 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam
2.11 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.41 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.32 MB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed.bam.bai
3.56 MB
ZAG402A64_S36_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
34.91 MB
ZAG402A64_S36_L003_R1_001_preprocessed.bam
550.91 MB
ZAG402A64_S36_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A64_S36_L003_R1_001_preprocessed_SJ.out.tab
3.57 MB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam.bai
5.09 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.88 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam
2.71 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_SJ.out.tab
61.13 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A64_S36_L003_R1_001_fastqc.zip
440.74 kB
ZAG402A64_S36_L003_R1_001.fastq.gz
401.79 MB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.02 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.95 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam
2.16 MB
STAR
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.68 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam
2.51 MB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.bam.bai
5.09 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled_SJ.out.tab
50.74 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A64_S36_L003_R1_001_preprocessed_tpm.tab.gz
386.37 kB
ZAG402A64_S36_L003_R1_001_preprocessed_rc.tab.gz
236.05 kB
ZAG402A64_S36_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A64_S36_L003_R1_001_preprocessed_fpkm.tab.gz
386.00 kB
ZAG402A64_S36_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
ZAG402A64_S36_L003_R1_001_preprocessed_cpm.tab.gz
222.65 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.fastq.gz
50.13 MB
Samtools idxstats
idxstat_report.txt
5.94 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A64_S36_L003_R1_001_preprocessed_downsampled.fastq.gz
46.34 MB
BBDuk (single-end)
ZAG402A64_S36_L003_R1_001_statistics.txt.gz
483 B
fastqc
Directory
ZAG402A64_S36_L003_R1_001_preprocessed.fastq.gz
325.04 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A64_S36_L003_R1_001_preprocessed.fastq.gz
280.45 MB
ZAG402A64_S36_L003_R1_001_statistics.txt.gz
831 B
featureCounts
results
Directory
ZAG402A64_S36_L003_R1_001_preprocessed_rc.tab.gz
235.94 kB
ZAG402A64_S36_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
358 B
ZAG402A64_S36_L003_R1_001_preprocessed_tpm.tab.gz
386.14 kB
ZAG402A64_S36_L003_R1_001_preprocessed_fpkm.tab.gz
385.66 kB
ZAG402A64_S36_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
ZAG402A64_S36_L003_R1_001_preprocessed_cpm.tab.gz
221.59 kB

18. Chromatin, XRN2, siMATR3, dmso

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.91 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.fastq.gz
46.71 MB
STAR
ZAG402A66_S38_L003_R1_001_preprocessed.bam.bai
3.76 MB
ZAG402A66_S38_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.78 MB
ZAG402A66_S38_L003_R1_001_preprocessed.bam
405.15 MB
ZAG402A66_S38_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A66_S38_L003_R1_001_preprocessed_SJ.out.tab
3.09 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A66_S38_L003_R1_001.fastq.gz
295.36 MB
ZAG402A66_S38_L003_R1_001_fastqc.zip
437.88 kB
STAR
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.64 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_SJ.out.tab
9.93 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam
1.92 MB
STAR
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.17 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam.bai
4.97 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_SJ.out.tab
49.32 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam
2.46 MB
featureCounts
ZAG402A66_S38_L003_R1_001_preprocessed_fpkm.tab.gz
341.75 kB
ZAG402A66_S38_L003_R1_001_preprocessed_rc.tab.gz
231.77 kB
ZAG402A66_S38_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
featureCounts_rc.txt.summary
358 B
ZAG402A66_S38_L003_R1_001_preprocessed_tpm.tab.gz
342.16 kB
ZAG402A66_S38_L003_R1_001_preprocessed_cpm.tab.gz
213.67 kB
ZAG402A66_S38_L003_R1_001_preprocessed_expressions.txt.gz
933.06 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.fastq.gz
50.64 MB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.12 MB
STAR
ZAG402A66_S38_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
19.05 MB
ZAG402A66_S38_L003_R1_001_preprocessed.bam.bai
2.80 MB
ZAG402A66_S38_L003_R1_001_preprocessed.bam
371.41 MB
ZAG402A66_S38_L003_R1_001_preprocessed_SJ.out.tab
2.64 MB
ZAG402A66_S38_L003_R1_001_preprocessed_stats.txt
1.81 kB
STAR
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam
1.86 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.86 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_SJ.out.tab
10.83 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A66_S38_L003_R1_001_preprocessed.fastq.gz
240.78 MB
ZAG402A66_S38_L003_R1_001_statistics.txt.gz
491 B
Samtools idxstats
idxstat_report.txt
5.89 kB
featureCounts
results
Directory
ZAG402A66_S38_L003_R1_001_preprocessed_rc.tab.gz
231.52 kB
ZAG402A66_S38_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A66_S38_L003_R1_001_preprocessed_fpkm.tab.gz
342.74 kB
featureCounts_rc.txt.summary
358 B
ZAG402A66_S38_L003_R1_001_preprocessed_tpm.tab.gz
343.14 kB
ZAG402A66_S38_L003_R1_001_preprocessed_expressions.txt.gz
934.57 kB
ZAG402A66_S38_L003_R1_001_preprocessed_cpm.tab.gz
212.68 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A66_S38_L003_R1_001_statistics.txt.gz
807 B
ZAG402A66_S38_L003_R1_001_preprocessed.fastq.gz
206.93 MB
STAR
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.26 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam.bai
5.02 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_SJ.out.tab
59.02 kB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled.bam
2.64 MB
ZAG402A66_S38_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB

2. Chromatin, TIR1, siCTRL, aux

Samtools idxstats
idxstat_report.txt
5.93 kB
Samtools idxstats
idxstat_report.txt
5.93 kB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
STAR
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.13 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam.bai
4.98 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam
2.58 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_SJ.out.tab
62.30 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.fastq.gz
52.28 MB
STAR
ZAG402A50_S22_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.25 MB
ZAG402A50_S22_L003_R1_001_preprocessed.bam.bai
3.56 MB
ZAG402A50_S22_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A50_S22_L003_R1_001_preprocessed.bam
461.22 MB
ZAG402A50_S22_L003_R1_001_preprocessed_SJ.out.tab
3.22 MB
featureCounts
ZAG402A50_S22_L003_R1_001_preprocessed_rc.tab.gz
234.88 kB
featureCounts_rc.txt.summary
358 B
ZAG402A50_S22_L003_R1_001_preprocessed_tpm.tab.gz
389.72 kB
ZAG402A50_S22_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A50_S22_L003_R1_001_preprocessed_cpm.tab.gz
219.22 kB
ZAG402A50_S22_L003_R1_001_preprocessed_fpkm.tab.gz
389.07 kB
results
Directory
ZAG402A50_S22_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
QoRTs QC
qorts_report.zip
9.28 MB
qorts_output
Directory
STAR
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam
1.72 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.44 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_SJ.out.tab
9.26 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam
2.36 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam.bai
4.45 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.85 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_SJ.out.tab
50.64 kB
featureCounts
ZAG402A50_S22_L003_R1_001_preprocessed_fpkm.tab.gz
388.06 kB
featureCounts_rc.txt.summary
358 B
ZAG402A50_S22_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A50_S22_L003_R1_001_preprocessed_tpm.tab.gz
388.31 kB
ZAG402A50_S22_L003_R1_001_preprocessed_rc.tab.gz
235.16 kB
ZAG402A50_S22_L003_R1_001_preprocessed_cpm.tab.gz
219.71 kB
ZAG402A50_S22_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A50_S22_L003_R1_001_fastqc.zip
436.82 kB
ZAG402A50_S22_L003_R1_001.fastq.gz
346.32 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (single-end)
ZAG402A50_S22_L003_R1_001_preprocessed.fastq.gz
246.64 MB
fastqc
Directory
ZAG402A50_S22_L003_R1_001_statistics.txt.gz
813 B
BBDuk (single-end)
ZAG402A50_S22_L003_R1_001_statistics.txt.gz
480 B
fastqc
Directory
ZAG402A50_S22_L003_R1_001_preprocessed.fastq.gz
286.08 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.fastq.gz
47.56 MB
STAR
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled.bam
1.67 MB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_SJ.out.tab
7.58 kB
ZAG402A50_S22_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.86 MB
STAR
ZAG402A50_S22_L003_R1_001_preprocessed.bam
431.12 MB
ZAG402A50_S22_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
22.36 MB
ZAG402A50_S22_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A50_S22_L003_R1_001_preprocessed_SJ.out.tab
2.77 MB
ZAG402A50_S22_L003_R1_001_preprocessed.bam.bai
2.66 MB

20. Chromatin, XRN2, siEXOSC3, aux

Samtools idxstats
idxstat_report.txt
5.93 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed.bam.bai
3.45 MB
ZAG402A68_S40_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.46 MB
ZAG402A68_S40_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A68_S40_L003_R1_001_preprocessed_SJ.out.tab
3.75 MB
ZAG402A68_S40_L003_R1_001_preprocessed.bam
632.39 MB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam.bai
5.09 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam
2.71 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.99 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_SJ.out.tab
63.00 kB
FASTQ file (single-end)
ZAG402A68_S40_L003_R1_001.fastq.gz
440.37 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A68_S40_L003_R1_001_fastqc.zip
445.63 kB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.50 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.35 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam
2.37 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.41 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam.bai
4.88 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_SJ.out.tab
50.76 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam
2.45 MB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A68_S40_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A68_S40_L003_R1_001_preprocessed_fpkm.tab.gz
387.62 kB
ZAG402A68_S40_L003_R1_001_preprocessed_rc.tab.gz
236.00 kB
ZAG402A68_S40_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
ZAG402A68_S40_L003_R1_001_preprocessed_tpm.tab.gz
388.08 kB
ZAG402A68_S40_L003_R1_001_preprocessed_cpm.tab.gz
222.20 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.fastq.gz
48.81 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.41 MB
Samtools idxstats
idxstat_report.txt
5.95 kB
BBDuk (single-end)
ZAG402A68_S40_L003_R1_001_preprocessed.fastq.gz
351.41 MB
ZAG402A68_S40_L003_R1_001_statistics.txt.gz
482 B
fastqc
Directory
BBDuk (single-end)
fastqc
Directory
ZAG402A68_S40_L003_R1_001_preprocessed.fastq.gz
303.31 MB
ZAG402A68_S40_L003_R1_001_statistics.txt.gz
826 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.fastq.gz
45.40 MB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.22 MB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.40 kB
ZAG402A68_S40_L003_R1_001_preprocessed_downsampled.bam
2.35 MB
featureCounts
ZAG402A68_S40_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
358 B
ZAG402A68_S40_L003_R1_001_preprocessed_fpkm.tab.gz
387.65 kB
results
Directory
ZAG402A68_S40_L003_R1_001_preprocessed_tpm.tab.gz
388.30 kB
ZAG402A68_S40_L003_R1_001_preprocessed_cpm.tab.gz
221.58 kB
ZAG402A68_S40_L003_R1_001_preprocessed_rc.tab.gz
235.75 kB
ZAG402A68_S40_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
STAR
ZAG402A68_S40_L003_R1_001_preprocessed.bam.bai
2.70 MB
ZAG402A68_S40_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
29.61 MB
ZAG402A68_S40_L003_R1_001_preprocessed.bam
574.81 MB
ZAG402A68_S40_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A68_S40_L003_R1_001_preprocessed_SJ.out.tab
3.08 MB

7. Chromatin, XRN2, siCTRL, aux

STAR
ZAG402A55_S27_L003_R1_001_preprocessed.bam
331.88 MB
ZAG402A55_S27_L003_R1_001_preprocessed_SJ.out.tab
2.60 MB
ZAG402A55_S27_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A55_S27_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
21.88 MB
ZAG402A55_S27_L003_R1_001_preprocessed.bam.bai
3.86 MB
Samtools idxstats
idxstat_report.txt
5.90 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
8.86 MB
STAR
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.15 MB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.51 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam
2.49 MB
STAR
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.22 MB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam
2.40 MB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam.bai
4.96 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.08 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A55_S27_L003_R1_001_preprocessed_rc.tab.gz
231.15 kB
ZAG402A55_S27_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A55_S27_L003_R1_001_preprocessed_fpkm.tab.gz
353.83 kB
ZAG402A55_S27_L003_R1_001_preprocessed_cpm.tab.gz
210.49 kB
ZAG402A55_S27_L003_R1_001_preprocessed_expressions.txt.gz
953.64 kB
ZAG402A55_S27_L003_R1_001_preprocessed_tpm.tab.gz
354.16 kB
FASTQ file (single-end)
ZAG402A55_S27_L003_R1_001.fastq.gz
241.70 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A55_S27_L003_R1_001_fastqc.zip
443.74 kB
Samtools idxstats
idxstat_report.txt
5.91 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A55_S27_L003_R1_001_preprocessed.fastq.gz
198.15 MB
ZAG402A55_S27_L003_R1_001_statistics.txt.gz
469 B
Subsample FASTQ (single-end)
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.fastq.gz
51.67 MB
fastqc
Directory
STAR
ZAG402A55_S27_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
17.02 MB
ZAG402A55_S27_L003_R1_001_preprocessed.bam
307.33 MB
ZAG402A55_S27_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A55_S27_L003_R1_001_preprocessed.bam.bai
2.92 MB
ZAG402A55_S27_L003_R1_001_preprocessed_SJ.out.tab
2.21 MB
STAR
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.82 MB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam
2.44 MB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.56 kB
STAR
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam.bai
5.07 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_SJ.out.tab
63.71 kB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.bam
2.70 MB
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.70 MB
BBDuk (single-end)
ZAG402A55_S27_L003_R1_001_preprocessed.fastq.gz
169.98 MB
fastqc
Directory
ZAG402A55_S27_L003_R1_001_statistics.txt.gz
729 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A55_S27_L003_R1_001_preprocessed_downsampled.fastq.gz
47.16 MB
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A55_S27_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A55_S27_L003_R1_001_preprocessed_fpkm.tab.gz
353.83 kB
results
Directory
ZAG402A55_S27_L003_R1_001_preprocessed_rc.tab.gz
230.98 kB
ZAG402A55_S27_L003_R1_001_preprocessed_expressions.txt.gz
953.39 kB
ZAG402A55_S27_L003_R1_001_preprocessed_cpm.tab.gz
210.45 kB
ZAG402A55_S27_L003_R1_001_preprocessed_tpm.tab.gz
354.53 kB

21. Chromatin, XRN2, siEXOSC3, aux

Samtools idxstats
idxstat_report.txt
5.87 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A69_S41_L003_R1_001_statistics.txt.gz
721 B
ZAG402A69_S41_L003_R1_001_preprocessed.fastq.gz
157.70 MB
STAR
ZAG402A69_S41_L003_R1_001_preprocessed.bam
304.69 MB
ZAG402A69_S41_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
20.24 MB
ZAG402A69_S41_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A69_S41_L003_R1_001_preprocessed_SJ.out.tab
2.96 MB
ZAG402A69_S41_L003_R1_001_preprocessed.bam.bai
3.82 MB
STAR
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam
2.93 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.14 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_SJ.out.tab
16.15 kB
STAR
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.56 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam
2.26 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam.bai
4.33 kB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_SJ.out.tab
57.28 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A69_S41_L003_R1_001.fastq.gz
224.47 MB
ZAG402A69_S41_L003_R1_001_fastqc.zip
440.81 kB
STAR
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.34 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam
2.97 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_SJ.out.tab
15.41 kB
STAR
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam.bai
4.34 kB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.99 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_SJ.out.tab
44.30 kB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.bam
2.02 MB
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A69_S41_L003_R1_001_preprocessed_rc.tab.gz
231.45 kB
ZAG402A69_S41_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A69_S41_L003_R1_001_preprocessed_tpm.tab.gz
334.78 kB
ZAG402A69_S41_L003_R1_001_preprocessed_fpkm.tab.gz
334.58 kB
ZAG402A69_S41_L003_R1_001_preprocessed_expressions.txt.gz
917.48 kB
ZAG402A69_S41_L003_R1_001_preprocessed_cpm.tab.gz
212.55 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
8.92 MB
Subsample FASTQ (single-end)
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.fastq.gz
52.29 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
5.88 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A69_S41_L003_R1_001_preprocessed.fastq.gz
184.63 MB
ZAG402A69_S41_L003_R1_001_statistics.txt.gz
457 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A69_S41_L003_R1_001_preprocessed_downsampled.fastq.gz
47.88 MB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A69_S41_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
results
Directory
ZAG402A69_S41_L003_R1_001_preprocessed_rc.tab.gz
231.35 kB
ZAG402A69_S41_L003_R1_001_preprocessed_fpkm.tab.gz
336.08 kB
ZAG402A69_S41_L003_R1_001_preprocessed_cpm.tab.gz
212.06 kB
ZAG402A69_S41_L003_R1_001_preprocessed_expressions.txt.gz
918.14 kB
ZAG402A69_S41_L003_R1_001_preprocessed_tpm.tab.gz
336.28 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A69_S41_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
15.84 MB
ZAG402A69_S41_L003_R1_001_preprocessed.bam.bai
2.65 MB
ZAG402A69_S41_L003_R1_001_preprocessed.bam
282.18 MB
ZAG402A69_S41_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A69_S41_L003_R1_001_preprocessed_SJ.out.tab
2.56 MB

24. Chromatin, XRN2, siMATR3/EXOSC3, aux

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.96 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.94 kB
BBDuk (single-end)
ZAG402A72_S44_L003_R1_001_preprocessed.fastq.gz
395.85 MB
fastqc
Directory
ZAG402A72_S44_L003_R1_001_statistics.txt.gz
880 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.fastq.gz
45.99 MB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed.bam.bai
2.60 MB
ZAG402A72_S44_L003_R1_001_preprocessed.bam
676.94 MB
ZAG402A72_S44_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.98 MB
ZAG402A72_S44_L003_R1_001_preprocessed_SJ.out.tab
3.48 MB
ZAG402A72_S44_L003_R1_001_preprocessed_stats.txt
1.81 kB
QoRTs QC
qorts_report.zip
9.81 MB
qorts_output
Directory
STAR
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.48 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_SJ.out.tab
8.68 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam
1.48 MB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed.bam
750.33 MB
ZAG402A72_S44_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
50.90 MB
ZAG402A72_S44_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A72_S44_L003_R1_001_preprocessed.bam.bai
3.21 MB
ZAG402A72_S44_L003_R1_001_preprocessed_SJ.out.tab
4.34 MB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.59 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam.bai
4.95 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam
2.63 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_SJ.out.tab
62.99 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A72_S44_L003_R1_001.fastq.gz
577.26 MB
ZAG402A72_S44_L003_R1_001_fastqc.zip
437.69 kB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam
1.48 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_SJ.out.tab
7.83 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.73 MB
STAR
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.91 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam
2.47 MB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.bam.bai
4.91 kB
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled_SJ.out.tab
51.30 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A72_S44_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A72_S44_L003_R1_001_preprocessed_tpm.tab.gz
405.36 kB
ZAG402A72_S44_L003_R1_001_preprocessed_fpkm.tab.gz
405.30 kB
ZAG402A72_S44_L003_R1_001_preprocessed_rc.tab.gz
238.80 kB
ZAG402A72_S44_L003_R1_001_preprocessed_cpm.tab.gz
228.84 kB
ZAG402A72_S44_L003_R1_001_preprocessed_expressions.txt.gz
1.07 MB
Subsample FASTQ (single-end)
ZAG402A72_S44_L003_R1_001_preprocessed_downsampled.fastq.gz
49.31 MB
fastqc
Directory
BBDuk (single-end)
fastqc
Directory
ZAG402A72_S44_L003_R1_001_preprocessed.fastq.gz
461.22 MB
ZAG402A72_S44_L003_R1_001_statistics.txt.gz
487 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A72_S44_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A72_S44_L003_R1_001_preprocessed_rc.tab.gz
238.48 kB
ZAG402A72_S44_L003_R1_001_preprocessed_fpkm.tab.gz
403.45 kB
ZAG402A72_S44_L003_R1_001_preprocessed_tpm.tab.gz
403.72 kB
ZAG402A72_S44_L003_R1_001_preprocessed_cpm.tab.gz
226.94 kB
ZAG402A72_S44_L003_R1_001_preprocessed_expressions.txt.gz
1.07 MB

4. Chromatin, TIR1, siMATR3, aux

Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.fastq.gz
53.12 MB
Samtools idxstats
idxstat_report.txt
5.91 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.fastq.gz
48.15 MB
STAR
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.48 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.89 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam
2.62 MB
STAR
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.66 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam.bai
4.90 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam
2.34 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_SJ.out.tab
49.40 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A52_S24_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A52_S24_L003_R1_001_preprocessed_rc.tab.gz
233.57 kB
ZAG402A52_S24_L003_R1_001_preprocessed_fpkm.tab.gz
350.68 kB
ZAG402A52_S24_L003_R1_001_preprocessed_tpm.tab.gz
351.33 kB
ZAG402A52_S24_L003_R1_001_preprocessed_cpm.tab.gz
216.70 kB
ZAG402A52_S24_L003_R1_001_preprocessed_expressions.txt.gz
957.87 kB
FASTQ file (single-end)
ZAG402A52_S24_L003_R1_001_fastqc.zip
435.35 kB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A52_S24_L003_R1_001.fastq.gz
329.84 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.12 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A52_S24_L003_R1_001_preprocessed.fastq.gz
274.27 MB
ZAG402A52_S24_L003_R1_001_statistics.txt.gz
485 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A52_S24_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.88 MB
ZAG402A52_S24_L003_R1_001_preprocessed.bam
426.92 MB
ZAG402A52_S24_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A52_S24_L003_R1_001_preprocessed_SJ.out.tab
3.14 MB
ZAG402A52_S24_L003_R1_001_preprocessed.bam.bai
3.84 MB
STAR
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.75 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam
2.53 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.69 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam
2.65 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.69 MB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled.bam.bai
4.94 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A52_S24_L003_R1_001_preprocessed_downsampled_SJ.out.tab
61.10 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A52_S24_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A52_S24_L003_R1_001_preprocessed_tpm.tab.gz
353.83 kB
ZAG402A52_S24_L003_R1_001_preprocessed_fpkm.tab.gz
353.49 kB
ZAG402A52_S24_L003_R1_001_preprocessed_expressions.txt.gz
962.93 kB
ZAG402A52_S24_L003_R1_001_preprocessed_cpm.tab.gz
216.48 kB
ZAG402A52_S24_L003_R1_001_preprocessed_rc.tab.gz
233.40 kB
STAR
ZAG402A52_S24_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
22.06 MB
ZAG402A52_S24_L003_R1_001_preprocessed.bam
405.89 MB
ZAG402A52_S24_L003_R1_001_preprocessed.bam.bai
2.94 MB
ZAG402A52_S24_L003_R1_001_preprocessed_SJ.out.tab
2.64 MB
ZAG402A52_S24_L003_R1_001_preprocessed_stats.txt
1.81 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A52_S24_L003_R1_001_preprocessed.fastq.gz
236.36 MB
ZAG402A52_S24_L003_R1_001_statistics.txt.gz
802 B

8. Chromatin, XRN2, siCTRL, aux

MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.91 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A56_S28_L003_R1_001.fastq.gz
298.64 MB
stderr.txt
1.09 kB
ZAG402A56_S28_L003_R1_001_fastqc.zip
438.31 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A56_S28_L003_R1_001_statistics.txt.gz
469 B
ZAG402A56_S28_L003_R1_001_preprocessed.fastq.gz
243.16 MB
STAR
ZAG402A56_S28_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
26.08 MB
ZAG402A56_S28_L003_R1_001_preprocessed.bam.bai
3.75 MB
ZAG402A56_S28_L003_R1_001_preprocessed_SJ.out.tab
2.89 MB
ZAG402A56_S28_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A56_S28_L003_R1_001_preprocessed.bam
401.55 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
STAR
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam
2.00 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.72 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_SJ.out.tab
10.49 kB
STAR
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.39 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam
2.30 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.52 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam.bai
4.56 kB
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A56_S28_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A56_S28_L003_R1_001_preprocessed_expressions.txt.gz
980.10 kB
ZAG402A56_S28_L003_R1_001_preprocessed_tpm.tab.gz
363.55 kB
ZAG402A56_S28_L003_R1_001_preprocessed_fpkm.tab.gz
363.11 kB
ZAG402A56_S28_L003_R1_001_preprocessed_cpm.tab.gz
214.38 kB
ZAG402A56_S28_L003_R1_001_preprocessed_rc.tab.gz
232.70 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.03 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.fastq.gz
50.79 MB
BBDuk (single-end)
ZAG402A56_S28_L003_R1_001_preprocessed.fastq.gz
210.41 MB
fastqc
Directory
ZAG402A56_S28_L003_R1_001_statistics.txt.gz
806 B
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A56_S28_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A56_S28_L003_R1_001_preprocessed_rc.tab.gz
232.43 kB
results
Directory
ZAG402A56_S28_L003_R1_001_preprocessed_fpkm.tab.gz
363.54 kB
ZAG402A56_S28_L003_R1_001_preprocessed_tpm.tab.gz
363.95 kB
ZAG402A56_S28_L003_R1_001_preprocessed_cpm.tab.gz
213.19 kB
ZAG402A56_S28_L003_R1_001_preprocessed_expressions.txt.gz
979.09 kB
STAR
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam
1.96 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.18 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.70 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.fastq.gz
46.62 MB
STAR
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.23 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam.bai
4.73 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled.bam
2.52 MB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A56_S28_L003_R1_001_preprocessed_downsampled_SJ.out.tab
55.33 kB
STAR
ZAG402A56_S28_L003_R1_001_preprocessed.bam
373.20 MB
ZAG402A56_S28_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
20.51 MB
ZAG402A56_S28_L003_R1_001_preprocessed.bam.bai
2.85 MB
ZAG402A56_S28_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A56_S28_L003_R1_001_preprocessed_SJ.out.tab
2.46 MB

9. Chromatin, XRN2, siCTRL,aux

Samtools idxstats
idxstat_report.txt
5.91 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A57_S29_L003_R1_001_fastqc.zip
438.30 kB
ZAG402A57_S29_L003_R1_001.fastq.gz
350.01 MB
stderr.txt
1.09 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A57_S29_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A57_S29_L003_R1_001_preprocessed.bam
458.06 MB
ZAG402A57_S29_L003_R1_001_preprocessed.bam.bai
3.81 MB
ZAG402A57_S29_L003_R1_001_preprocessed_SJ.out.tab
3.24 MB
ZAG402A57_S29_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
31.46 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A57_S29_L003_R1_001_preprocessed.fastq.gz
247.27 MB
ZAG402A57_S29_L003_R1_001_statistics.txt.gz
875 B
STAR
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.09 MB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam
2.60 MB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.51 kB
STAR
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_SJ.out.tab
51.66 kB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.28 MB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam.bai
4.75 kB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam
2.33 MB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A57_S29_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A57_S29_L003_R1_001_preprocessed_fpkm.tab.gz
345.86 kB
ZAG402A57_S29_L003_R1_001_preprocessed_rc.tab.gz
233.34 kB
ZAG402A57_S29_L003_R1_001_preprocessed_cpm.tab.gz
216.85 kB
ZAG402A57_S29_L003_R1_001_preprocessed_expressions.txt.gz
947.38 kB
ZAG402A57_S29_L003_R1_001_preprocessed_tpm.tab.gz
346.43 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.fastq.gz
51.71 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.17 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam
2.55 MB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.77 MB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.43 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A57_S29_L003_R1_001_preprocessed.fastq.gz
286.98 MB
ZAG402A57_S29_L003_R1_001_statistics.txt.gz
486 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.fastq.gz
47.20 MB
STAR
ZAG402A57_S29_L003_R1_001_preprocessed.bam
430.91 MB
ZAG402A57_S29_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.56 MB
ZAG402A57_S29_L003_R1_001_preprocessed_SJ.out.tab
2.70 MB
ZAG402A57_S29_L003_R1_001_preprocessed.bam.bai
2.88 MB
ZAG402A57_S29_L003_R1_001_preprocessed_stats.txt
1.81 kB
STAR
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam
2.67 MB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled.bam.bai
5.02 kB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.72 MB
ZAG402A57_S29_L003_R1_001_preprocessed_downsampled_SJ.out.tab
62.33 kB
featureCounts
ZAG402A57_S29_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A57_S29_L003_R1_001_preprocessed_tpm.tab.gz
348.43 kB
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A57_S29_L003_R1_001_preprocessed_rc.tab.gz
233.26 kB
ZAG402A57_S29_L003_R1_001_preprocessed_fpkm.tab.gz
347.66 kB
ZAG402A57_S29_L003_R1_001_preprocessed_cpm.tab.gz
216.47 kB
ZAG402A57_S29_L003_R1_001_preprocessed_expressions.txt.gz
950.43 kB

11. Nucleoplasm, XRN2, siCTRL, dmso

FASTQ file (single-end)
fastqc
Directory
ZAG402A83_S55_L003_R1_001_fastqc.zip
432.75 kB
ZAG402A83_S55_L003_R1_001.fastq.gz
310.64 MB
stderr.txt
1.09 kB
featureCounts
ZAG402A83_S55_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
359 B
ZAG402A83_S55_L003_R1_001_preprocessed_tpm.tab.gz
338.81 kB
ZAG402A83_S55_L003_R1_001_preprocessed_fpkm.tab.gz
338.79 kB
ZAG402A83_S55_L003_R1_001_preprocessed_rc.tab.gz
234.34 kB
ZAG402A83_S55_L003_R1_001_preprocessed_expressions.txt.gz
940.61 kB
ZAG402A83_S55_L003_R1_001_preprocessed_cpm.tab.gz
220.89 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
QoRTs QC
qorts_report.zip
9.27 MB
qorts_output
Directory
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.fastq.gz
54.03 MB
STAR
ZAG402A83_S55_L003_R1_001_preprocessed.bam.bai
3.61 MB
ZAG402A83_S55_L003_R1_001_preprocessed.bam
398.69 MB
ZAG402A83_S55_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
26.47 MB
ZAG402A83_S55_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A83_S55_L003_R1_001_preprocessed_SJ.out.tab
3.77 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.89 kB
STAR
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.21 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam
2.76 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.44 kB
STAR
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam.bai
3.95 kB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam
1.86 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.74 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_SJ.out.tab
40.08 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A83_S55_L003_R1_001_preprocessed.fastq.gz
224.04 MB
ZAG402A83_S55_L003_R1_001_statistics.txt.gz
771 B
BBDuk (single-end)
ZAG402A83_S55_L003_R1_001_statistics.txt.gz
481 B
fastqc
Directory
ZAG402A83_S55_L003_R1_001_preprocessed.fastq.gz
259.90 MB
Subsample FASTQ (single-end)
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.fastq.gz
48.94 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
5.88 kB
STAR
ZAG402A83_S55_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
21.45 MB
ZAG402A83_S55_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A83_S55_L003_R1_001_preprocessed_SJ.out.tab
3.32 MB
ZAG402A83_S55_L003_R1_001_preprocessed.bam.bai
2.68 MB
ZAG402A83_S55_L003_R1_001_preprocessed.bam
382.11 MB
STAR
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_SJ.out.tab
51.79 kB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.64 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam
2.14 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam.bai
4.16 kB
STAR
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam
2.68 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.37 MB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A83_S55_L003_R1_001_preprocessed_downsampled_SJ.out.tab
15.90 kB
featureCounts
ZAG402A83_S55_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
359 B
ZAG402A83_S55_L003_R1_001_preprocessed_fpkm.tab.gz
342.27 kB
ZAG402A83_S55_L003_R1_001_preprocessed_rc.tab.gz
234.49 kB
results
Directory
ZAG402A83_S55_L003_R1_001_preprocessed_cpm.tab.gz
221.26 kB
ZAG402A83_S55_L003_R1_001_preprocessed_expressions.txt.gz
948.82 kB
ZAG402A83_S55_L003_R1_001_preprocessed_tpm.tab.gz
342.74 kB

13. Nucleoplasm, XRN2, siMATR3, aux

MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
FASTQ file (single-end)
ZAG402A85_S57_L003_R1_001.fastq.gz
547.64 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A85_S57_L003_R1_001_fastqc.zip
443.75 kB
QoRTs QC
qorts_report.zip
9.86 MB
qorts_output
Directory
Samtools idxstats
idxstat_report.txt
5.90 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.fastq.gz
48.88 MB
STAR
ZAG402A85_S57_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
56.62 MB
ZAG402A85_S57_L003_R1_001_preprocessed.bam.bai
3.56 MB
ZAG402A85_S57_L003_R1_001_preprocessed.bam
752.25 MB
ZAG402A85_S57_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A85_S57_L003_R1_001_preprocessed_SJ.out.tab
5.32 MB
Samtools idxstats
idxstat_report.txt
5.93 kB
BBDuk (single-end)
ZAG402A85_S57_L003_R1_001_preprocessed.fastq.gz
364.65 MB
ZAG402A85_S57_L003_R1_001_statistics.txt.gz
965 B
fastqc
Directory
STAR
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam.bai
2.59 kB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam
1.44 MB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.88 MB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_SJ.out.tab
30.49 kB
STAR
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_SJ.out.tab
18.47 kB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam
3.17 MB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.91 MB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A85_S57_L003_R1_001_preprocessed_rc.tab.gz
239.92 kB
ZAG402A85_S57_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A85_S57_L003_R1_001_preprocessed_cpm.tab.gz
238.88 kB
ZAG402A85_S57_L003_R1_001_preprocessed_fpkm.tab.gz
372.43 kB
ZAG402A85_S57_L003_R1_001_preprocessed_expressions.txt.gz
1.01 MB
ZAG402A85_S57_L003_R1_001_preprocessed_tpm.tab.gz
372.02 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A85_S57_L003_R1_001_statistics.txt.gz
486 B
ZAG402A85_S57_L003_R1_001_preprocessed.fastq.gz
431.12 MB
Subsample FASTQ (single-end)
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.fastq.gz
45.74 MB
fastqc
Directory
STAR
ZAG402A85_S57_L003_R1_001_preprocessed.bam
677.82 MB
ZAG402A85_S57_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
42.02 MB
ZAG402A85_S57_L003_R1_001_preprocessed_stats.txt
1.82 kB
ZAG402A85_S57_L003_R1_001_preprocessed.bam.bai
2.91 MB
ZAG402A85_S57_L003_R1_001_preprocessed_SJ.out.tab
4.36 MB
STAR
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam
3.25 MB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
42.84 MB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_SJ.out.tab
20.28 kB
STAR
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam.bai
2.98 kB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.74 MB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled_SJ.out.tab
41.11 kB
ZAG402A85_S57_L003_R1_001_preprocessed_downsampled.bam
1.56 MB
featureCounts
ZAG402A85_S57_L003_R1_001_preprocessed_rc.tab.gz
239.72 kB
featureCounts_rc.txt.summary
359 B
ZAG402A85_S57_L003_R1_001_preprocessed_tpm.tab.gz
367.14 kB
ZAG402A85_S57_L003_R1_001_preprocessed_fpkm.tab.gz
367.50 kB
results
Directory
ZAG402A85_S57_L003_R1_001_preprocessed_cpm.tab.gz
237.67 kB
ZAG402A85_S57_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A85_S57_L003_R1_001_preprocessed_expressions.txt.gz
1.00 MB

21. Nucleoplasm, XRN2, siEXOSC3, aux

STAR
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_SJ.out.tab
5.43 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.12 MB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam
990.08 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.84 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A93_S65_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
ZAG402A93_S65_L003_R1_001_preprocessed_rc.tab.gz
242.02 kB
ZAG402A93_S65_L003_R1_001_preprocessed_tpm.tab.gz
472.06 kB
ZAG402A93_S65_L003_R1_001_preprocessed_cpm.tab.gz
227.77 kB
ZAG402A93_S65_L003_R1_001_preprocessed_expressions.txt.gz
1.22 MB
ZAG402A93_S65_L003_R1_001_preprocessed_fpkm.tab.gz
470.93 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam.bai
5.03 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.84 MB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam
2.65 MB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_SJ.out.tab
62.82 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A93_S65_L003_R1_001_preprocessed.fastq.gz
491.30 MB
ZAG402A93_S65_L003_R1_001_statistics.txt.gz
492 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.fastq.gz
49.97 MB
STAR
ZAG402A93_S65_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
53.25 MB
ZAG402A93_S65_L003_R1_001_preprocessed.bam.bai
2.65 MB
ZAG402A93_S65_L003_R1_001_preprocessed.bam
801.75 MB
ZAG402A93_S65_L003_R1_001_preprocessed_SJ.out.tab
3.93 MB
ZAG402A93_S65_L003_R1_001_preprocessed_stats.txt
1.81 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A93_S65_L003_R1_001.fastq.gz
607.35 MB
stderr.txt
1.09 kB
ZAG402A93_S65_L003_R1_001_fastqc.zip
431.49 kB
Samtools idxstats
idxstat_report.txt
6.01 kB
STAR
ZAG402A93_S65_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A93_S65_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
41.77 MB
ZAG402A93_S65_L003_R1_001_preprocessed.bam
729.27 MB
ZAG402A93_S65_L003_R1_001_preprocessed.bam.bai
2.08 MB
ZAG402A93_S65_L003_R1_001_preprocessed_SJ.out.tab
3.23 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Samtools idxstats
idxstat_report.txt
5.98 kB
STAR
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam
1014.77 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.79 MB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_SJ.out.tab
5.83 kB
STAR
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.61 MB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam.bai
4.79 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_SJ.out.tab
54.47 kB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.bam
2.43 MB
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A93_S65_L003_R1_001_preprocessed_fpkm.tab.gz
471.49 kB
ZAG402A93_S65_L003_R1_001_preprocessed_rc.tab.gz
242.37 kB
ZAG402A93_S65_L003_R1_001_preprocessed_tpm.tab.gz
473.28 kB
ZAG402A93_S65_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.44 MB
ZAG402A93_S65_L003_R1_001_preprocessed_expressions.txt.gz
1.23 MB
ZAG402A93_S65_L003_R1_001_preprocessed_cpm.tab.gz
228.99 kB
BBDuk (single-end)
ZAG402A93_S65_L003_R1_001_statistics.txt.gz
975 B
fastqc
Directory
ZAG402A93_S65_L003_R1_001_preprocessed.fastq.gz
425.23 MB
Subsample FASTQ (single-end)
ZAG402A93_S65_L003_R1_001_preprocessed_downsampled.fastq.gz
46.21 MB
fastqc
Directory

23. Nucleoplasm, XRN2, siMATR3/EXOSC3, aux

Samtools idxstats
idxstat_report.txt
5.88 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A95_S67_L003_R1_001.fastq.gz
364.44 MB
ZAG402A95_S67_L003_R1_001_fastqc.zip
438.41 kB
stderr.txt
1.09 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.fastq.gz
47.62 MB
STAR
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.44 MB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.bam.bai
3.63 kB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.bam
1.94 MB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_SJ.out.tab
47.80 kB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
QoRTs QC
qorts_report.zip
9.37 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A95_S67_L003_R1_001_preprocessed.fastq.gz
297.97 MB
ZAG402A95_S67_L003_R1_001_statistics.txt.gz
476 B
featureCounts
results
Directory
featureCounts_rc.txt.summary
359 B
ZAG402A95_S67_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A95_S67_L003_R1_001_preprocessed_rc.tab.gz
235.52 kB
ZAG402A95_S67_L003_R1_001_preprocessed_fpkm.tab.gz
350.40 kB
ZAG402A95_S67_L003_R1_001_preprocessed_tpm.tab.gz
350.50 kB
ZAG402A95_S67_L003_R1_001_preprocessed_expressions.txt.gz
967.89 kB
ZAG402A95_S67_L003_R1_001_preprocessed_cpm.tab.gz
224.32 kB
STAR
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.63 MB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.bam
2.02 MB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.84 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.fastq.gz
51.81 MB
STAR
ZAG402A95_S67_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
31.39 MB
ZAG402A95_S67_L003_R1_001_preprocessed.bam.bai
3.82 MB
ZAG402A95_S67_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A95_S67_L003_R1_001_preprocessed.bam
461.77 MB
ZAG402A95_S67_L003_R1_001_preprocessed_SJ.out.tab
3.89 MB
Samtools idxstats
idxstat_report.txt
5.90 kB
STAR
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.67 MB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.50 kB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.bam
2.05 MB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A95_S67_L003_R1_001_preprocessed_fpkm.tab.gz
348.83 kB
ZAG402A95_S67_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A95_S67_L003_R1_001_preprocessed_rc.tab.gz
235.47 kB
ZAG402A95_S67_L003_R1_001_preprocessed_cpm.tab.gz
224.54 kB
ZAG402A95_S67_L003_R1_001_preprocessed_tpm.tab.gz
348.66 kB
ZAG402A95_S67_L003_R1_001_preprocessed_expressions.txt.gz
964.88 kB
STAR
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.bam.bai
3.57 kB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.65 MB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled.bam
1.71 MB
ZAG402A95_S67_L003_R1_001_preprocessed_downsampled_SJ.out.tab
38.03 kB
STAR
ZAG402A95_S67_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.76 MB
ZAG402A95_S67_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A95_S67_L003_R1_001_preprocessed_SJ.out.tab
3.33 MB
ZAG402A95_S67_L003_R1_001_preprocessed.bam.bai
2.74 MB
ZAG402A95_S67_L003_R1_001_preprocessed.bam
431.30 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A95_S67_L003_R1_001_statistics.txt.gz
803 B
ZAG402A95_S67_L003_R1_001_preprocessed.fastq.gz
256.31 MB

10. Nucleoplasm, XRN2, siCTRL, dmso

Samtools idxstats
idxstat_report.txt
5.88 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
8.97 MB
STAR
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam
3.46 MB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.35 MB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_SJ.out.tab
18.06 kB
STAR
ZAG402A82_S54_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
29.31 MB
ZAG402A82_S54_L003_R1_001_preprocessed.bam
378.37 MB
ZAG402A82_S54_L003_R1_001_preprocessed.bam.bai
3.97 MB
ZAG402A82_S54_L003_R1_001_preprocessed_SJ.out.tab
3.07 MB
ZAG402A82_S54_L003_R1_001_preprocessed_stats.txt
1.81 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.fastq.gz
51.67 MB
STAR
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.23 MB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam
2.25 MB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam.bai
4.47 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_SJ.out.tab
55.73 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A82_S54_L003_R1_001.fastq.gz
304.44 MB
ZAG402A82_S54_L003_R1_001_fastqc.zip
435.50 kB
stderr.txt
1.09 kB
BBDuk (single-end)
ZAG402A82_S54_L003_R1_001_preprocessed.fastq.gz
214.94 MB
fastqc
Directory
ZAG402A82_S54_L003_R1_001_statistics.txt.gz
812 B
Samtools idxstats
idxstat_report.txt
5.90 kB
featureCounts
ZAG402A82_S54_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
359 B
ZAG402A82_S54_L003_R1_001_preprocessed_fpkm.tab.gz
328.28 kB
ZAG402A82_S54_L003_R1_001_preprocessed_rc.tab.gz
232.84 kB
ZAG402A82_S54_L003_R1_001_preprocessed_tpm.tab.gz
328.72 kB
ZAG402A82_S54_L003_R1_001_preprocessed_cpm.tab.gz
216.73 kB
ZAG402A82_S54_L003_R1_001_preprocessed_expressions.txt.gz
911.62 kB
STAR
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.21 MB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_SJ.out.tab
15.58 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam
3.48 MB
STAR
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam
1.97 MB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.bam.bai
4.36 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_SJ.out.tab
42.38 kB
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.34 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A82_S54_L003_R1_001_statistics.txt.gz
486 B
ZAG402A82_S54_L003_R1_001_preprocessed.fastq.gz
249.22 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A82_S54_L003_R1_001_preprocessed_downsampled.fastq.gz
47.58 MB
STAR
ZAG402A82_S54_L003_R1_001_preprocessed.bam
355.43 MB
ZAG402A82_S54_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
23.16 MB
ZAG402A82_S54_L003_R1_001_preprocessed.bam.bai
2.74 MB
ZAG402A82_S54_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A82_S54_L003_R1_001_preprocessed_SJ.out.tab
2.48 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A82_S54_L003_R1_001_preprocessed_rc.tab.gz
232.77 kB
ZAG402A82_S54_L003_R1_001_preprocessed_fpkm.tab.gz
328.32 kB
ZAG402A82_S54_L003_R1_001_preprocessed_cpm.tab.gz
216.38 kB
ZAG402A82_S54_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A82_S54_L003_R1_001_preprocessed_expressions.txt.gz
911.69 kB
ZAG402A82_S54_L003_R1_001_preprocessed_tpm.tab.gz
329.18 kB

3. Nucleoplasm, TIR1, siCTRL, aux

Samtools idxstats
idxstat_report.txt
5.89 kB
featureCounts
featureCounts_rc.txt.summary
359 B
results
Directory
ZAG402A75_S47_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A75_S47_L003_R1_001_preprocessed_tpm.tab.gz
348.94 kB
ZAG402A75_S47_L003_R1_001_preprocessed_fpkm.tab.gz
348.89 kB
ZAG402A75_S47_L003_R1_001_preprocessed_rc.tab.gz
236.89 kB
ZAG402A75_S47_L003_R1_001_preprocessed_cpm.tab.gz
229.02 kB
ZAG402A75_S47_L003_R1_001_preprocessed_expressions.txt.gz
974.49 kB
Samtools idxstats
idxstat_report.txt
5.91 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A75_S47_L003_R1_001_preprocessed.bam.bai
3.77 MB
ZAG402A75_S47_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
36.62 MB
ZAG402A75_S47_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A75_S47_L003_R1_001_preprocessed_SJ.out.tab
4.36 MB
ZAG402A75_S47_L003_R1_001_preprocessed.bam
509.29 MB
FASTQ file (single-end)
ZAG402A75_S47_L003_R1_001.fastq.gz
415.68 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A75_S47_L003_R1_001_fastqc.zip
434.81 kB
STAR
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.28 MB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.bam
2.57 MB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_SJ.out.tab
15.33 kB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.67 MB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_SJ.out.tab
38.43 kB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.bam.bai
3.80 kB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.bam
1.78 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.fastq.gz
52.86 MB
QoRTs QC
qorts_report.zip
9.52 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
ZAG402A75_S47_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A75_S47_L003_R1_001_preprocessed_rc.tab.gz
236.88 kB
featureCounts_rc.txt.summary
359 B
ZAG402A75_S47_L003_R1_001_preprocessed_fpkm.tab.gz
347.11 kB
ZAG402A75_S47_L003_R1_001_preprocessed_tpm.tab.gz
347.23 kB
ZAG402A75_S47_L003_R1_001_preprocessed_expressions.txt.gz
971.04 kB
ZAG402A75_S47_L003_R1_001_preprocessed_cpm.tab.gz
229.38 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A75_S47_L003_R1_001_statistics.txt.gz
494 B
ZAG402A75_S47_L003_R1_001_preprocessed.fastq.gz
343.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.fastq.gz
48.35 MB
STAR
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.95 MB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.bam
2.54 MB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.21 kB
BBDuk (single-end)
ZAG402A75_S47_L003_R1_001_preprocessed.fastq.gz
294.24 MB
fastqc
Directory
ZAG402A75_S47_L003_R1_001_statistics.txt.gz
849 B
STAR
ZAG402A75_S47_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A75_S47_L003_R1_001_preprocessed.bam.bai
2.78 MB
ZAG402A75_S47_L003_R1_001_preprocessed.bam
481.58 MB
ZAG402A75_S47_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.59 MB
ZAG402A75_S47_L003_R1_001_preprocessed_SJ.out.tab
3.68 MB
STAR
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.bam
1.96 MB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.15 MB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled.bam.bai
3.79 kB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A75_S47_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.50 kB

4. Nucleoplasm, TIR1, siMATR3, aux

FASTQ file (single-end)
fastqc
Directory
ZAG402A76_S48_L003_R1_001.fastq.gz
176.62 MB
ZAG402A76_S48_L003_R1_001_fastqc.zip
437.97 kB
stderr.txt
1.09 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
357 B
ZAG402A76_S48_L003_R1_001_preprocessed_tpm.tab.gz
325.03 kB
ZAG402A76_S48_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A76_S48_L003_R1_001_preprocessed_rc.tab.gz
229.42 kB
ZAG402A76_S48_L003_R1_001_preprocessed_cpm.tab.gz
207.37 kB
ZAG402A76_S48_L003_R1_001_preprocessed_expressions.txt.gz
887.86 kB
ZAG402A76_S48_L003_R1_001_preprocessed_fpkm.tab.gz
324.81 kB
STAR
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.75 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam
2.27 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam.bai
4.27 kB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_SJ.out.tab
55.29 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A76_S48_L003_R1_001_preprocessed.fastq.gz
124.45 MB
ZAG402A76_S48_L003_R1_001_statistics.txt.gz
769 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
8.71 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.fastq.gz
51.52 MB
STAR
ZAG402A76_S48_L003_R1_001_preprocessed.bam.bai
3.75 MB
ZAG402A76_S48_L003_R1_001_preprocessed.bam
240.24 MB
ZAG402A76_S48_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
16.92 MB
ZAG402A76_S48_L003_R1_001_preprocessed_SJ.out.tab
2.60 MB
ZAG402A76_S48_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A76_S48_L003_R1_001_preprocessed.bw
10.39 MB
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A76_S48_L003_R1_001_preprocessed_fpkm.tab.gz
322.16 kB
ZAG402A76_S48_L003_R1_001_preprocessed_rc.tab.gz
229.35 kB
ZAG402A76_S48_L003_R1_001_preprocessed_tpm.tab.gz
322.88 kB
ZAG402A76_S48_L003_R1_001_preprocessed_cpm.tab.gz
207.44 kB
ZAG402A76_S48_L003_R1_001_preprocessed_expressions.txt.gz
882.03 kB
ZAG402A76_S48_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
STAR
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam.bai
4.12 kB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.24 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam
1.95 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_SJ.out.tab
44.84 kB
STAR
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.23 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam
3.10 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_SJ.out.tab
17.34 kB
STAR
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.46 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_SJ.out.tab
17.49 kB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.bam
3.13 MB
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
Subsample FASTQ (single-end)
ZAG402A76_S48_L003_R1_001_preprocessed_downsampled.fastq.gz
47.08 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
5.87 kB
BBDuk (single-end)
ZAG402A76_S48_L003_R1_001_preprocessed.fastq.gz
144.81 MB
fastqc
Directory
ZAG402A76_S48_L003_R1_001_statistics.txt.gz
460 B
STAR
ZAG402A76_S48_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
13.24 MB
ZAG402A76_S48_L003_R1_001_preprocessed.bam
225.29 MB
ZAG402A76_S48_L003_R1_001_preprocessed.bam.bai
2.68 MB
ZAG402A76_S48_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A76_S48_L003_R1_001_preprocessed_SJ.out.tab
2.26 MB
Samtools idxstats
idxstat_report.txt
5.86 kB

5. Nucleoplasm, TIR1, siMATR3, aux

Samtools idxstats
idxstat_report.txt
5.88 kB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
QoRTs QC
qorts_report.zip
9.51 MB
qorts_output
Directory
STAR
ZAG402A77_S49_L003_R1_001_preprocessed.bam
459.58 MB
ZAG402A77_S49_L003_R1_001_preprocessed.bam.bai
3.68 MB
ZAG402A77_S49_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.24 MB
ZAG402A77_S49_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A77_S49_L003_R1_001_preprocessed_SJ.out.tab
4.21 MB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A77_S49_L003_R1_001_preprocessed_fpkm.tab.gz
354.15 kB
ZAG402A77_S49_L003_R1_001_preprocessed_rc.tab.gz
236.07 kB
results
Directory
ZAG402A77_S49_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A77_S49_L003_R1_001_preprocessed_cpm.tab.gz
225.72 kB
ZAG402A77_S49_L003_R1_001_preprocessed_tpm.tab.gz
354.01 kB
ZAG402A77_S49_L003_R1_001_preprocessed_expressions.txt.gz
979.54 kB
STAR
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam
2.17 MB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.95 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.47 MB
Samtools idxstats
idxstat_report.txt
5.90 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A77_S49_L003_R1_001.fastq.gz
351.09 MB
ZAG402A77_S49_L003_R1_001_fastqc.zip
439.04 kB
stderr.txt
1.09 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.fastq.gz
53.46 MB
STAR
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.15 MB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.78 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam
2.23 MB
STAR
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.26 MB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam.bai
3.85 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam
1.79 MB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_SJ.out.tab
40.56 kB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A77_S49_L003_R1_001_preprocessed_fpkm.tab.gz
350.09 kB
ZAG402A77_S49_L003_R1_001_preprocessed_expressions.txt.gz
972.98 kB
ZAG402A77_S49_L003_R1_001_preprocessed_cpm.tab.gz
225.37 kB
ZAG402A77_S49_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A77_S49_L003_R1_001_preprocessed_rc.tab.gz
236.02 kB
ZAG402A77_S49_L003_R1_001_preprocessed_tpm.tab.gz
350.00 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A77_S49_L003_R1_001_preprocessed.fastq.gz
291.66 MB
ZAG402A77_S49_L003_R1_001_statistics.txt.gz
473 B
STAR
ZAG402A77_S49_L003_R1_001_preprocessed.bam.bai
2.80 MB
ZAG402A77_S49_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
22.69 MB
ZAG402A77_S49_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A77_S49_L003_R1_001_preprocessed.bam
436.90 MB
ZAG402A77_S49_L003_R1_001_preprocessed_SJ.out.tab
3.77 MB
BBDuk (single-end)
ZAG402A77_S49_L003_R1_001_preprocessed.fastq.gz
251.20 MB
fastqc
Directory
ZAG402A77_S49_L003_R1_001_statistics.txt.gz
782 B
STAR
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam.bai
3.86 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.35 MB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.bam
2.07 MB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled_SJ.out.tab
49.30 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A77_S49_L003_R1_001_preprocessed_downsampled.fastq.gz
48.60 MB

6. Nucleoplasm, TIR1, siMATR3, aux

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.87 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.fastq.gz
52.53 MB
STAR
ZAG402A78_S50_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
23.98 MB
ZAG402A78_S50_L003_R1_001_preprocessed.bam.bai
3.93 MB
ZAG402A78_S50_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A78_S50_L003_R1_001_preprocessed.bam
322.47 MB
ZAG402A78_S50_L003_R1_001_preprocessed_SJ.out.tab
2.87 MB
featureCounts
results
Directory
ZAG402A78_S50_L003_R1_001_preprocessed_cpm.tab.gz
212.06 kB
ZAG402A78_S50_L003_R1_001_preprocessed_rc.tab.gz
231.26 kB
featureCounts_rc.txt.summary
358 B
ZAG402A78_S50_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A78_S50_L003_R1_001_preprocessed_fpkm.tab.gz
326.26 kB
ZAG402A78_S50_L003_R1_001_preprocessed_tpm.tab.gz
326.90 kB
ZAG402A78_S50_L003_R1_001_preprocessed_expressions.txt.gz
899.22 kB
STAR
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam.bai
4.73 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.74 MB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam
2.45 MB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_SJ.out.tab
58.72 kB
FASTQ file (single-end)
ZAG402A78_S50_L003_R1_001.fastq.gz
251.57 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A78_S50_L003_R1_001_fastqc.zip
439.04 kB
Samtools idxstats
idxstat_report.txt
5.89 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
8.88 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam
3.29 MB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_SJ.out.tab
17.82 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.29 MB
STAR
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam
2.18 MB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam.bai
4.59 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_SJ.out.tab
44.89 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.11 MB
featureCounts
ZAG402A78_S50_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A78_S50_L003_R1_001_preprocessed_tpm.tab.gz
327.49 kB
ZAG402A78_S50_L003_R1_001_preprocessed_fpkm.tab.gz
326.87 kB
featureCounts_rc.txt.summary
358 B
ZAG402A78_S50_L003_R1_001_preprocessed_rc.tab.gz
231.41 kB
ZAG402A78_S50_L003_R1_001_preprocessed_cpm.tab.gz
212.55 kB
ZAG402A78_S50_L003_R1_001_preprocessed_expressions.txt.gz
901.58 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A78_S50_L003_R1_001_preprocessed.fastq.gz
207.07 MB
ZAG402A78_S50_L003_R1_001_statistics.txt.gz
470 B
STAR
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam
3.26 MB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.16 MB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled_SJ.out.tab
16.94 kB
Subsample FASTQ (single-end)
ZAG402A78_S50_L003_R1_001_preprocessed_downsampled.fastq.gz
48.18 MB
fastqc
Directory
STAR
ZAG402A78_S50_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A78_S50_L003_R1_001_preprocessed.bam.bai
2.67 MB
ZAG402A78_S50_L003_R1_001_preprocessed_SJ.out.tab
2.40 MB
ZAG402A78_S50_L003_R1_001_preprocessed.bam
299.89 MB
ZAG402A78_S50_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
18.82 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A78_S50_L003_R1_001_statistics.txt.gz
716 B
ZAG402A78_S50_L003_R1_001_preprocessed.fastq.gz
176.91 MB

7. Nucleoplasm, XRN2, siCTRL, aux

MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Subsample FASTQ (single-end)
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.fastq.gz
52.09 MB
fastqc
Directory
QoRTs QC
qorts_report.zip
8.83 MB
qorts_output
Directory
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
STAR
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.35 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam.bai
4.54 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_SJ.out.tab
55.62 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam
2.41 MB
STAR
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.04 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam
4.13 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_SJ.out.tab
22.44 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A79_S51_L003_R1_001_preprocessed.bam.bai
3.96 MB
ZAG402A79_S51_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
26.16 MB
ZAG402A79_S51_L003_R1_001_preprocessed_SJ.out.tab
2.72 MB
ZAG402A79_S51_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A79_S51_L003_R1_001_preprocessed.bam
345.02 MB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A79_S51_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A79_S51_L003_R1_001_preprocessed_fpkm.tab.gz
323.09 kB
ZAG402A79_S51_L003_R1_001_preprocessed_rc.tab.gz
231.00 kB
ZAG402A79_S51_L003_R1_001_preprocessed_tpm.tab.gz
323.55 kB
ZAG402A79_S51_L003_R1_001_preprocessed_cpm.tab.gz
212.02 kB
ZAG402A79_S51_L003_R1_001_preprocessed_expressions.txt.gz
891.89 kB
results
Directory
Samtools idxstats
idxstat_report.txt
5.89 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A79_S51_L003_R1_001.fastq.gz
264.89 MB
ZAG402A79_S51_L003_R1_001_fastqc.zip
438.47 kB
stderr.txt
1.09 kB
STAR
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.08 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam
4.17 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_SJ.out.tab
20.02 kB
STAR
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam.bai
4.64 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.69 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.bam
2.15 MB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_SJ.out.tab
41.61 kB
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A79_S51_L003_R1_001_preprocessed_fpkm.tab.gz
322.91 kB
ZAG402A79_S51_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A79_S51_L003_R1_001_preprocessed_cpm.tab.gz
211.93 kB
ZAG402A79_S51_L003_R1_001_preprocessed_tpm.tab.gz
323.33 kB
ZAG402A79_S51_L003_R1_001_preprocessed_expressions.txt.gz
892.69 kB
ZAG402A79_S51_L003_R1_001_preprocessed_rc.tab.gz
231.11 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A79_S51_L003_R1_001_preprocessed.fastq.gz
217.05 MB
ZAG402A79_S51_L003_R1_001_statistics.txt.gz
481 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A79_S51_L003_R1_001_preprocessed_downsampled.fastq.gz
47.77 MB
STAR
ZAG402A79_S51_L003_R1_001_preprocessed.bam.bai
2.68 MB
ZAG402A79_S51_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
20.87 MB
ZAG402A79_S51_L003_R1_001_preprocessed.bam
323.68 MB
ZAG402A79_S51_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A79_S51_L003_R1_001_preprocessed_SJ.out.tab
2.21 MB
BBDuk (single-end)
ZAG402A79_S51_L003_R1_001_statistics.txt.gz
757 B
fastqc
Directory
ZAG402A79_S51_L003_R1_001_preprocessed.fastq.gz
186.56 MB
Samtools idxstats
idxstat_report.txt
5.87 kB

12. Nucleoplasm, XRN2, siCTRL, dmso

Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.88 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
42.45 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.37 kB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam
2.47 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A84_S56_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
46.07 MB
ZAG402A84_S56_L003_R1_001_preprocessed.bam
557.80 MB
ZAG402A84_S56_L003_R1_001_preprocessed.bam.bai
3.77 MB
ZAG402A84_S56_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A84_S56_L003_R1_001_preprocessed_SJ.out.tab
4.40 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A84_S56_L003_R1_001.fastq.gz
446.87 MB
ZAG402A84_S56_L003_R1_001_fastqc.zip
446.03 kB
STAR
ZAG402A84_S56_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
35.01 MB
ZAG402A84_S56_L003_R1_001_preprocessed.bam.bai
2.84 MB
ZAG402A84_S56_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A84_S56_L003_R1_001_preprocessed.bam
504.09 MB
ZAG402A84_S56_L003_R1_001_preprocessed_SJ.out.tab
3.47 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.39 MB
STAR
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam
2.39 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.94 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.40 kB
STAR
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam.bai
3.13 kB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.31 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam
1.51 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_SJ.out.tab
30.60 kB
featureCounts
ZAG402A84_S56_L003_R1_001_preprocessed_rc.tab.gz
237.75 kB
ZAG402A84_S56_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A84_S56_L003_R1_001_preprocessed_cpm.tab.gz
231.38 kB
ZAG402A84_S56_L003_R1_001_preprocessed_tpm.tab.gz
352.91 kB
featureCounts_rc.txt.summary
359 B
ZAG402A84_S56_L003_R1_001_preprocessed_fpkm.tab.gz
353.04 kB
ZAG402A84_S56_L003_R1_001_preprocessed_expressions.txt.gz
983.87 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A84_S56_L003_R1_001_statistics.txt.gz
473 B
ZAG402A84_S56_L003_R1_001_preprocessed.fastq.gz
346.88 MB
Subsample FASTQ (single-end)
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.fastq.gz
47.33 MB
fastqc
Directory
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.fastq.gz
44.78 MB
STAR
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.74 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam
1.63 MB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled.bam.bai
3.14 kB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A84_S56_L003_R1_001_preprocessed_downsampled_SJ.out.tab
41.39 kB
BBDuk (single-end)
ZAG402A84_S56_L003_R1_001_preprocessed.fastq.gz
297.87 MB
ZAG402A84_S56_L003_R1_001_statistics.txt.gz
915 B
fastqc
Directory
featureCounts
results
Directory
featureCounts_rc.txt.summary
359 B
ZAG402A84_S56_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A84_S56_L003_R1_001_preprocessed_rc.tab.gz
237.32 kB
ZAG402A84_S56_L003_R1_001_preprocessed_fpkm.tab.gz
348.31 kB
ZAG402A84_S56_L003_R1_001_preprocessed_cpm.tab.gz
230.19 kB
ZAG402A84_S56_L003_R1_001_preprocessed_tpm.tab.gz
348.26 kB
ZAG402A84_S56_L003_R1_001_preprocessed_expressions.txt.gz
973.28 kB

8. Nucleoplasm, XRN2, siCTRL, aux

BBDuk (single-end)
fastqc
Directory
ZAG402A80_S52_L003_R1_001_preprocessed.fastq.gz
72.46 MB
ZAG402A80_S52_L003_R1_001_statistics.txt.gz
774 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.fastq.gz
41.38 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
8.27 MB
Samtools idxstats
idxstat_report.txt
5.84 kB
Samtools idxstats
idxstat_report.txt
5.88 kB
STAR
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
39.05 MB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_SJ.out.tab
47.21 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam.bai
3.77 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam
1.81 MB
STAR
ZAG402A80_S52_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
17.26 MB
ZAG402A80_S52_L003_R1_001_preprocessed.bam.bai
4.26 MB
ZAG402A80_S52_L003_R1_001_preprocessed.bam
171.71 MB
ZAG402A80_S52_L003_R1_001_preprocessed_SJ.out.tab
1.74 MB
ZAG402A80_S52_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A80_S52_L003_R1_001_preprocessed.bw
9.42 MB
featureCounts
ZAG402A80_S52_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
results
Directory
featureCounts_rc.txt.summary
356 B
ZAG402A80_S52_L003_R1_001_preprocessed_tpm.tab.gz
307.96 kB
ZAG402A80_S52_L003_R1_001_preprocessed_cpm.tab.gz
199.99 kB
ZAG402A80_S52_L003_R1_001_preprocessed_rc.tab.gz
225.68 kB
ZAG402A80_S52_L003_R1_001_preprocessed_expressions.txt.gz
836.06 kB
ZAG402A80_S52_L003_R1_001_preprocessed_fpkm.tab.gz
307.67 kB
STAR
ZAG402A80_S52_L003_R1_001_preprocessed.bam.bai
2.60 MB
ZAG402A80_S52_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A80_S52_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
12.46 MB
ZAG402A80_S52_L003_R1_001_preprocessed.bam
142.02 MB
ZAG402A80_S52_L003_R1_001_preprocessed_SJ.out.tab
1.35 MB
ZAG402A80_S52_L003_R1_001_preprocessed.bw
5.65 MB
FASTQ file (single-end)
ZAG402A80_S52_L003_R1_001.fastq.gz
121.41 MB
fastqc
Directory
ZAG402A80_S52_L003_R1_001_fastqc.zip
459.92 kB
stderr.txt
1.09 kB
featureCounts
ZAG402A80_S52_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
featureCounts_rc.txt.summary
356 B
ZAG402A80_S52_L003_R1_001_preprocessed_rc.tab.gz
226.02 kB
ZAG402A80_S52_L003_R1_001_preprocessed_tpm.tab.gz
312.59 kB
ZAG402A80_S52_L003_R1_001_preprocessed_expressions.txt.gz
847.63 kB
ZAG402A80_S52_L003_R1_001_preprocessed_cpm.tab.gz
200.56 kB
ZAG402A80_S52_L003_R1_001_preprocessed_fpkm.tab.gz
312.02 kB
STAR
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam
3.62 MB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
38.18 MB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_SJ.out.tab
18.21 kB
STAR
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
40.32 MB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam.bai
4.09 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam
1.85 MB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_SJ.out.tab
33.39 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A80_S52_L003_R1_001_statistics.txt.gz
462 B
ZAG402A80_S52_L003_R1_001_preprocessed.fastq.gz
87.07 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
STAR
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
36.76 MB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_SJ.out.tab
20.83 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.bam
4.02 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A80_S52_L003_R1_001_preprocessed_downsampled.fastq.gz
40.10 MB

9. Nucleoplasm, XRN2, siCTRL,aux

Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.fastq.gz
53.04 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.fastq.gz
48.43 MB
STAR
ZAG402A81_S53_L003_R1_001_preprocessed.bam.bai
3.89 MB
ZAG402A81_S53_L003_R1_001_preprocessed.bam
478.17 MB
ZAG402A81_S53_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
35.69 MB
ZAG402A81_S53_L003_R1_001_preprocessed_SJ.out.tab
3.73 MB
ZAG402A81_S53_L003_R1_001_preprocessed_stats.txt
1.81 kB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
FASTQ file (single-end)
fastqc
Directory
ZAG402A81_S53_L003_R1_001.fastq.gz
386.69 MB
stderr.txt
1.09 kB
ZAG402A81_S53_L003_R1_001_fastqc.zip
428.81 kB
Samtools idxstats
idxstat_report.txt
5.91 kB
QoRTs QC
qorts_report.zip
9.30 MB
qorts_output
Directory
STAR
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.73 MB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_SJ.out.tab
17.12 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam
3.35 MB
STAR
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam
2.03 MB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.68 MB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_SJ.out.tab
43.48 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam.bai
4.49 kB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A81_S53_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A81_S53_L003_R1_001_preprocessed_fpkm.tab.gz
340.10 kB
ZAG402A81_S53_L003_R1_001_preprocessed_tpm.tab.gz
340.53 kB
ZAG402A81_S53_L003_R1_001_preprocessed_rc.tab.gz
235.15 kB
ZAG402A81_S53_L003_R1_001_preprocessed_cpm.tab.gz
223.74 kB
ZAG402A81_S53_L003_R1_001_preprocessed_expressions.txt.gz
947.97 kB
BBDuk (single-end)
ZAG402A81_S53_L003_R1_001_statistics.txt.gz
489 B
fastqc
Directory
ZAG402A81_S53_L003_R1_001_preprocessed.fastq.gz
319.85 MB
STAR
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam
2.28 MB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam.bai
4.59 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.07 MB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_SJ.out.tab
55.97 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
ZAG402A81_S53_L003_R1_001_preprocessed_rc.tab.gz
235.21 kB
featureCounts_rc.txt.summary
359 B
ZAG402A81_S53_L003_R1_001_preprocessed_fpkm.tab.gz
341.95 kB
ZAG402A81_S53_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A81_S53_L003_R1_001_preprocessed_tpm.tab.gz
342.25 kB
ZAG402A81_S53_L003_R1_001_preprocessed_cpm.tab.gz
222.66 kB
ZAG402A81_S53_L003_R1_001_preprocessed_expressions.txt.gz
949.71 kB
results
Directory
STAR
ZAG402A81_S53_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
28.28 MB
ZAG402A81_S53_L003_R1_001_preprocessed.bam
452.65 MB
ZAG402A81_S53_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A81_S53_L003_R1_001_preprocessed.bam.bai
2.84 MB
ZAG402A81_S53_L003_R1_001_preprocessed_SJ.out.tab
3.07 MB
STAR
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled.bam
3.28 MB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_SJ.out.tab
18.23 kB
ZAG402A81_S53_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.37 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A81_S53_L003_R1_001_statistics.txt.gz
867 B
ZAG402A81_S53_L003_R1_001_preprocessed.fastq.gz
274.85 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.89 kB

14. Nucleoplasm, XRN2, siMATR3, aux

Samtools idxstats
idxstat_report.txt
5.90 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
BBDuk (single-end)
ZAG402A86_S58_L003_R1_001_statistics.txt.gz
493 B
ZAG402A86_S58_L003_R1_001_preprocessed.fastq.gz
534.51 MB
fastqc
Directory
featureCounts
results
Directory
ZAG402A86_S58_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A86_S58_L003_R1_001_preprocessed_rc.tab.gz
241.45 kB
ZAG402A86_S58_L003_R1_001_preprocessed_cpm.tab.gz
243.16 kB
ZAG402A86_S58_L003_R1_001_preprocessed_tpm.tab.gz
373.41 kB
ZAG402A86_S58_L003_R1_001_preprocessed_fpkm.tab.gz
373.80 kB
ZAG402A86_S58_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
featureCounts_rc.txt.summary
359 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.fastq.gz
51.78 MB
STAR
ZAG402A86_S58_L003_R1_001_preprocessed.bam.bai
3.76 MB
ZAG402A86_S58_L003_R1_001_preprocessed.bam
779.99 MB
ZAG402A86_S58_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
60.39 MB
ZAG402A86_S58_L003_R1_001_preprocessed_stats.txt
1.82 kB
ZAG402A86_S58_L003_R1_001_preprocessed_SJ.out.tab
5.49 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A86_S58_L003_R1_001.fastq.gz
653.78 MB
ZAG402A86_S58_L003_R1_001_fastqc.zip
431.35 kB
stderr.txt
1.09 kB
QoRTs QC
qorts_report.zip
10.06 MB
qorts_output
Directory
Samtools idxstats
idxstat_report.txt
5.93 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.60 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.91 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam
2.13 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_SJ.out.tab
35.29 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam.bai
3.54 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam
1.59 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.68 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A86_S58_L003_R1_001_preprocessed_rc.tab.gz
241.40 kB
ZAG402A86_S58_L003_R1_001_preprocessed_fpkm.tab.gz
372.53 kB
ZAG402A86_S58_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A86_S58_L003_R1_001_preprocessed_tpm.tab.gz
372.02 kB
ZAG402A86_S58_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
ZAG402A86_S58_L003_R1_001_preprocessed_cpm.tab.gz
243.06 kB
BBDuk (single-end)
ZAG402A86_S58_L003_R1_001_preprocessed.fastq.gz
459.38 MB
fastqc
Directory
ZAG402A86_S58_L003_R1_001_statistics.txt.gz
891 B
STAR
ZAG402A86_S58_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
46.73 MB
ZAG402A86_S58_L003_R1_001_preprocessed.bam.bai
3.04 MB
ZAG402A86_S58_L003_R1_001_preprocessed.bam
743.71 MB
ZAG402A86_S58_L003_R1_001_preprocessed_stats.txt
1.82 kB
ZAG402A86_S58_L003_R1_001_preprocessed_SJ.out.tab
4.53 MB
Subsample FASTQ (single-end)
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.fastq.gz
47.40 MB
fastqc
Directory
STAR
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.36 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam
2.10 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.28 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.28 MB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_SJ.out.tab
45.78 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam.bai
3.42 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A86_S58_L003_R1_001_preprocessed_downsampled.bam
1.81 MB

16. Nucleoplasm, XRN2, siMATR3, dmso

Samtools idxstats
idxstat_report.txt
5.88 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.91 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.32 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam
2.34 MB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.73 MB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.83 kB
Subsample FASTQ (single-end)
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.fastq.gz
50.43 MB
fastqc
Directory
STAR
ZAG402A88_S60_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
32.78 MB
ZAG402A88_S60_L003_R1_001_preprocessed.bam.bai
3.84 MB
ZAG402A88_S60_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A88_S60_L003_R1_001_preprocessed.bam
450.71 MB
ZAG402A88_S60_L003_R1_001_preprocessed_SJ.out.tab
4.00 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A88_S60_L003_R1_001_preprocessed.fastq.gz
238.37 MB
ZAG402A88_S60_L003_R1_001_statistics.txt.gz
813 B
FASTQ file (single-end)
ZAG402A88_S60_L003_R1_001.fastq.gz
348.71 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A88_S60_L003_R1_001_fastqc.zip
446.91 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.fastq.gz
46.97 MB
STAR
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.07 MB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.88 kB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam
2.32 MB
STAR
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam.bai
3.87 kB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.27 MB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_SJ.out.tab
35.37 kB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam
1.77 MB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A88_S60_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A88_S60_L003_R1_001_preprocessed_rc.tab.gz
235.53 kB
ZAG402A88_S60_L003_R1_001_preprocessed_cpm.tab.gz
224.26 kB
ZAG402A88_S60_L003_R1_001_preprocessed_fpkm.tab.gz
347.91 kB
ZAG402A88_S60_L003_R1_001_preprocessed_expressions.txt.gz
964.39 kB
ZAG402A88_S60_L003_R1_001_preprocessed_tpm.tab.gz
347.77 kB
BBDuk (single-end)
ZAG402A88_S60_L003_R1_001_preprocessed.fastq.gz
279.97 MB
fastqc
Directory
ZAG402A88_S60_L003_R1_001_statistics.txt.gz
476 B
STAR
ZAG402A88_S60_L003_R1_001_preprocessed.bam.bai
2.74 MB
ZAG402A88_S60_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
25.20 MB
ZAG402A88_S60_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A88_S60_L003_R1_001_preprocessed.bam
408.99 MB
ZAG402A88_S60_L003_R1_001_preprocessed_SJ.out.tab
3.36 MB
STAR
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam.bai
3.59 kB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled.bam
1.91 MB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.80 MB
ZAG402A88_S60_L003_R1_001_preprocessed_downsampled_SJ.out.tab
47.51 kB
featureCounts
ZAG402A88_S60_L003_R1_001_preprocessed_expressions.txt.gz
959.68 kB
results
Directory
ZAG402A88_S60_L003_R1_001_preprocessed_fpkm.tab.gz
346.20 kB
ZAG402A88_S60_L003_R1_001_preprocessed_cpm.tab.gz
223.55 kB
featureCounts_rc.txt.summary
359 B
ZAG402A88_S60_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A88_S60_L003_R1_001_preprocessed_tpm.tab.gz
346.32 kB
ZAG402A88_S60_L003_R1_001_preprocessed_rc.tab.gz
235.41 kB

17. Nucleoplasm, XRN2, siMATR3, dmso

QoRTs QC
qorts_report.zip
9.66 MB
qorts_output
Directory
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
Samtools idxstats
idxstat_report.txt
5.88 kB
BBDuk (single-end)
ZAG402A89_S61_L003_R1_001_preprocessed.fastq.gz
346.40 MB
fastqc
Directory
ZAG402A89_S61_L003_R1_001_statistics.txt.gz
482 B
featureCounts
results
Directory
ZAG402A89_S61_L003_R1_001_preprocessed_rc.tab.gz
237.99 kB
ZAG402A89_S61_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
359 B
ZAG402A89_S61_L003_R1_001_preprocessed_fpkm.tab.gz
357.32 kB
ZAG402A89_S61_L003_R1_001_preprocessed_tpm.tab.gz
357.24 kB
ZAG402A89_S61_L003_R1_001_preprocessed_cpm.tab.gz
232.70 kB
ZAG402A89_S61_L003_R1_001_preprocessed_expressions.txt.gz
996.41 kB
STAR
ZAG402A89_S61_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.83 MB
ZAG402A89_S61_L003_R1_001_preprocessed.bam.bai
3.73 MB
ZAG402A89_S61_L003_R1_001_preprocessed_SJ.out.tab
4.71 MB
ZAG402A89_S61_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A89_S61_L003_R1_001_preprocessed.bam
583.10 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A89_S61_L003_R1_001.fastq.gz
430.14 MB
ZAG402A89_S61_L003_R1_001_fastqc.zip
443.11 kB
stderr.txt
1.09 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.fastq.gz
46.88 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.fastq.gz
50.40 MB
STAR
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam
3.07 MB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.48 MB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_SJ.out.tab
19.59 kB
STAR
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.40 MB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_SJ.out.tab
31.87 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam.bai
3.30 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam
1.46 MB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A89_S61_L003_R1_001_preprocessed_rc.tab.gz
238.18 kB
ZAG402A89_S61_L003_R1_001_preprocessed_fpkm.tab.gz
357.75 kB
ZAG402A89_S61_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A89_S61_L003_R1_001_preprocessed_cpm.tab.gz
232.72 kB
ZAG402A89_S61_L003_R1_001_preprocessed_tpm.tab.gz
357.36 kB
ZAG402A89_S61_L003_R1_001_preprocessed_expressions.txt.gz
999.08 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A89_S61_L003_R1_001_preprocessed.fastq.gz
297.02 MB
ZAG402A89_S61_L003_R1_001_statistics.txt.gz
817 B
STAR
ZAG402A89_S61_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
29.73 MB
ZAG402A89_S61_L003_R1_001_preprocessed.bam.bai
2.80 MB
ZAG402A89_S61_L003_R1_001_preprocessed.bam
533.58 MB
ZAG402A89_S61_L003_R1_001_preprocessed_SJ.out.tab
4.02 MB
ZAG402A89_S61_L003_R1_001_preprocessed_stats.txt
1.81 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam.bai
3.31 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam
1.55 MB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_SJ.out.tab
39.04 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.88 MB
STAR
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.11 MB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled.bam
3.07 MB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A89_S61_L003_R1_001_preprocessed_downsampled_SJ.out.tab
22.05 kB

18. Nucleoplasm, XRN2, siMATR3, dmso

MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.91 kB
featureCounts
ZAG402A90_S62_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
359 B
ZAG402A90_S62_L003_R1_001_preprocessed_cpm.tab.gz
225.28 kB
ZAG402A90_S62_L003_R1_001_preprocessed_fpkm.tab.gz
345.29 kB
results
Directory
ZAG402A90_S62_L003_R1_001_preprocessed_tpm.tab.gz
345.56 kB
ZAG402A90_S62_L003_R1_001_preprocessed_expressions.txt.gz
960.98 kB
ZAG402A90_S62_L003_R1_001_preprocessed_rc.tab.gz
235.76 kB
STAR
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.69 MB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.bam
2.24 MB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.34 kB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
BBDuk (single-end)
ZAG402A90_S62_L003_R1_001_preprocessed.fastq.gz
300.68 MB
fastqc
Directory
ZAG402A90_S62_L003_R1_001_statistics.txt.gz
486 B
STAR
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.65 MB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.bam.bai
3.86 kB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_SJ.out.tab
50.42 kB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.bam
1.97 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.fastq.gz
51.47 MB
STAR
ZAG402A90_S62_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
33.17 MB
ZAG402A90_S62_L003_R1_001_preprocessed.bam.bai
3.83 MB
ZAG402A90_S62_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A90_S62_L003_R1_001_preprocessed.bam
462.45 MB
ZAG402A90_S62_L003_R1_001_preprocessed_SJ.out.tab
4.08 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A90_S62_L003_R1_001.fastq.gz
369.36 MB
ZAG402A90_S62_L003_R1_001_fastqc.zip
444.17 kB
stderr.txt
1.09 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.36 MB
STAR
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.13 kB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.bam
2.21 MB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.20 MB
STAR
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.bam.bai
3.83 kB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.29 MB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.bam
1.80 MB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled_SJ.out.tab
38.64 kB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A90_S62_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A90_S62_L003_R1_001_preprocessed_rc.tab.gz
236.00 kB
ZAG402A90_S62_L003_R1_001_preprocessed_fpkm.tab.gz
347.16 kB
ZAG402A90_S62_L003_R1_001_preprocessed_tpm.tab.gz
346.96 kB
ZAG402A90_S62_L003_R1_001_preprocessed_cpm.tab.gz
225.69 kB
ZAG402A90_S62_L003_R1_001_preprocessed_expressions.txt.gz
966.87 kB
BBDuk (single-end)
ZAG402A90_S62_L003_R1_001_preprocessed.fastq.gz
256.32 MB
fastqc
Directory
ZAG402A90_S62_L003_R1_001_statistics.txt.gz
809 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A90_S62_L003_R1_001_preprocessed_downsampled.fastq.gz
47.85 MB
Samtools idxstats
idxstat_report.txt
5.88 kB
STAR
ZAG402A90_S62_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
25.69 MB
ZAG402A90_S62_L003_R1_001_preprocessed.bam.bai
2.72 MB
ZAG402A90_S62_L003_R1_001_preprocessed.bam
421.14 MB
ZAG402A90_S62_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A90_S62_L003_R1_001_preprocessed_SJ.out.tab
3.37 MB

19. Nucleoplasm, XRN2, siEXOSC3, aux

QoRTs QC
qorts_output
Directory
qorts_report.zip
9.49 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
Samtools idxstats
idxstat_report.txt
5.89 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A91_S63_L003_R1_001_preprocessed.fastq.gz
366.38 MB
ZAG402A91_S63_L003_R1_001_statistics.txt.gz
474 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.fastq.gz
50.88 MB
STAR
ZAG402A91_S63_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
41.90 MB
ZAG402A91_S63_L003_R1_001_preprocessed_SJ.out.tab
4.28 MB
ZAG402A91_S63_L003_R1_001_preprocessed.bam.bai
3.81 MB
ZAG402A91_S63_L003_R1_001_preprocessed.bam
569.62 MB
ZAG402A91_S63_L003_R1_001_preprocessed_stats.txt
1.81 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A91_S63_L003_R1_001.fastq.gz
453.19 MB
ZAG402A91_S63_L003_R1_001_fastqc.zip
445.85 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A91_S63_L003_R1_001_preprocessed.fastq.gz
311.61 MB
ZAG402A91_S63_L003_R1_001_statistics.txt.gz
945 B
STAR
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_SJ.out.tab
15.33 kB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.bam
2.75 MB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.91 MB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
Samtools idxstats
idxstat_report.txt
5.92 kB
STAR
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.18 MB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.bam
2.72 MB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.43 kB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.63 MB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.bam
1.98 MB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.bam.bai
4.10 kB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_SJ.out.tab
41.18 kB
featureCounts
ZAG402A91_S63_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A91_S63_L003_R1_001_preprocessed_rc.tab.gz
237.33 kB
featureCounts_rc.txt.summary
359 B
ZAG402A91_S63_L003_R1_001_preprocessed_fpkm.tab.gz
355.35 kB
ZAG402A91_S63_L003_R1_001_preprocessed_tpm.tab.gz
355.20 kB
ZAG402A91_S63_L003_R1_001_preprocessed_expressions.txt.gz
986.77 kB
ZAG402A91_S63_L003_R1_001_preprocessed_cpm.tab.gz
229.13 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.fastq.gz
47.49 MB
STAR
ZAG402A91_S63_L003_R1_001_preprocessed.bam
513.55 MB
ZAG402A91_S63_L003_R1_001_preprocessed.bam.bai
2.78 MB
ZAG402A91_S63_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
32.04 MB
ZAG402A91_S63_L003_R1_001_preprocessed_SJ.out.tab
3.40 MB
ZAG402A91_S63_L003_R1_001_preprocessed_stats.txt
1.81 kB
STAR
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.24 MB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled_SJ.out.tab
53.30 kB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.bam.bai
4.23 kB
ZAG402A91_S63_L003_R1_001_preprocessed_downsampled.bam
2.11 MB
featureCounts
ZAG402A91_S63_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A91_S63_L003_R1_001_preprocessed_rc.tab.gz
236.97 kB
featureCounts_rc.txt.summary
359 B
ZAG402A91_S63_L003_R1_001_preprocessed_fpkm.tab.gz
351.32 kB
results
Directory
ZAG402A91_S63_L003_R1_001_preprocessed_expressions.txt.gz
978.09 kB
ZAG402A91_S63_L003_R1_001_preprocessed_tpm.tab.gz
351.53 kB
ZAG402A91_S63_L003_R1_001_preprocessed_cpm.tab.gz
227.99 kB

20. Nucleoplasm, XRN2, siEXOSC3, aux

STAR
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.73 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam.bai
2.83 kB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam
1.69 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_SJ.out.tab
42.13 kB
FASTQ file (single-end)
ZAG402A92_S64_L003_R1_001_fastqc.zip
449.38 kB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A92_S64_L003_R1_001.fastq.gz
488.87 MB
featureCounts
results
Directory
ZAG402A92_S64_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A92_S64_L003_R1_001_preprocessed_rc.tab.gz
238.77 kB
ZAG402A92_S64_L003_R1_001_preprocessed_fpkm.tab.gz
365.45 kB
featureCounts_rc.txt.summary
359 B
ZAG402A92_S64_L003_R1_001_preprocessed_tpm.tab.gz
365.42 kB
ZAG402A92_S64_L003_R1_001_preprocessed_cpm.tab.gz
233.62 kB
ZAG402A92_S64_L003_R1_001_preprocessed_expressions.txt.gz
1014.57 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.80 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_SJ.out.tab
13.06 kB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam
2.08 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
BBDuk (single-end)
fastqc
Directory
ZAG402A92_S64_L003_R1_001_statistics.txt.gz
480 B
ZAG402A92_S64_L003_R1_001_preprocessed.fastq.gz
388.94 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.fastq.gz
49.58 MB
STAR
ZAG402A92_S64_L003_R1_001_preprocessed.bam
645.60 MB
ZAG402A92_S64_L003_R1_001_preprocessed.bam.bai
3.62 MB
ZAG402A92_S64_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A92_S64_L003_R1_001_preprocessed_SJ.out.tab
4.93 MB
ZAG402A92_S64_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
43.36 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.73 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam
2.03 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.51 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.52 kB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam
1.69 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_SJ.out.tab
33.25 kB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.49 MB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.bam.bai
3.57 kB
featureCounts
ZAG402A92_S64_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A92_S64_L003_R1_001_preprocessed_tpm.tab.gz
371.38 kB
ZAG402A92_S64_L003_R1_001_preprocessed_rc.tab.gz
239.24 kB
ZAG402A92_S64_L003_R1_001_preprocessed_fpkm.tab.gz
371.61 kB
featureCounts_rc.txt.summary
359 B
ZAG402A92_S64_L003_R1_001_preprocessed_cpm.tab.gz
234.73 kB
ZAG402A92_S64_L003_R1_001_preprocessed_expressions.txt.gz
1.01 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A92_S64_L003_R1_001_preprocessed.fastq.gz
328.98 MB
ZAG402A92_S64_L003_R1_001_statistics.txt.gz
882 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A92_S64_L003_R1_001_preprocessed_downsampled.fastq.gz
46.79 MB
STAR
ZAG402A92_S64_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
32.60 MB
ZAG402A92_S64_L003_R1_001_preprocessed.bam
566.10 MB
ZAG402A92_S64_L003_R1_001_preprocessed.bam.bai
2.83 MB
ZAG402A92_S64_L003_R1_001_preprocessed_SJ.out.tab
4.05 MB
ZAG402A92_S64_L003_R1_001_preprocessed_stats.txt
1.81 kB
Samtools idxstats
idxstat_report.txt
5.89 kB

22. Nucleoplasm, XRN2, siMATR3/EXOSC3, aux

Samtools idxstats
idxstat_report.txt
162 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
STAR
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
43.95 MB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.bam
2.15 MB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.12 kB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.bam.bai
3.34 kB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.bam
1.80 MB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_SJ.out.tab
46.69 kB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.89 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.bam.bai
3.55 kB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.30 MB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_SJ.out.tab
38.13 kB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.bam
1.67 MB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A94_S66_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A94_S66_L003_R1_001_preprocessed_fpkm.tab.gz
372.96 kB
ZAG402A94_S66_L003_R1_001_preprocessed_rc.tab.gz
241.17 kB
ZAG402A94_S66_L003_R1_001_preprocessed_tpm.tab.gz
372.36 kB
ZAG402A94_S66_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
ZAG402A94_S66_L003_R1_001_preprocessed_cpm.tab.gz
242.36 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A94_S66_L003_R1_001_preprocessed.fastq.gz
538.82 MB
ZAG402A94_S66_L003_R1_001_statistics.txt.gz
479 B
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.fastq.gz
49.39 MB
STAR
ZAG402A94_S66_L003_R1_001_preprocessed.bam
825.71 MB
ZAG402A94_S66_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
67.58 MB
ZAG402A94_S66_L003_R1_001_preprocessed_stats.txt
1.82 kB
ZAG402A94_S66_L003_R1_001_preprocessed_SJ.out.tab
5.55 MB
ZAG402A94_S66_L003_R1_001_preprocessed.bam.bai
3.63 MB
FASTQ file (single-end)
ZAG402A94_S66_L003_R1_001.fastq.gz
679.99 MB
fastqc
Directory
stderr.txt
1.09 kB
ZAG402A94_S66_L003_R1_001_fastqc.zip
441.25 kB
QoRTs QC
qorts_report.zip
9.99 MB
qorts_output
Directory
Samtools idxstats
idxstat_report.txt
5.93 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.fastq.gz
45.99 MB
STAR
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.23 MB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled.bam
2.14 MB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.23 kB
ZAG402A94_S66_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
Samtools idxstats
idxstat_report.txt
5.90 kB
STAR
ZAG402A94_S66_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
51.80 MB
ZAG402A94_S66_L003_R1_001_preprocessed.bam
756.16 MB
ZAG402A94_S66_L003_R1_001_preprocessed.bam.bai
2.98 MB
ZAG402A94_S66_L003_R1_001_preprocessed_stats.txt
1.82 kB
ZAG402A94_S66_L003_R1_001_preprocessed_SJ.out.tab
4.33 MB
featureCounts
ZAG402A94_S66_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
featureCounts_rc.txt.summary
359 B
ZAG402A94_S66_L003_R1_001_preprocessed_fpkm.tab.gz
370.47 kB
results
Directory
ZAG402A94_S66_L003_R1_001_preprocessed_tpm.tab.gz
370.13 kB
ZAG402A94_S66_L003_R1_001_preprocessed_expressions.txt.gz
1.01 MB
ZAG402A94_S66_L003_R1_001_preprocessed_rc.tab.gz
241.08 kB
ZAG402A94_S66_L003_R1_001_preprocessed_cpm.tab.gz
241.65 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A94_S66_L003_R1_001_preprocessed.fastq.gz
459.91 MB
ZAG402A94_S66_L003_R1_001_statistics.txt.gz
916 B

24. Nucleoplasm, XRN2, siMATR3/EXOSC3, aux

Samtools idxstats
idxstat_report.txt
5.90 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.94 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A96_S68_L003_R1_001.fastq.gz
762.29 MB
stderr.txt
1.09 kB
ZAG402A96_S68_L003_R1_001_fastqc.zip
436.49 kB
STAR
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.46 MB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.bam
1.88 MB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_SJ.out.tab
10.15 kB
QoRTs QC
qorts_report.zip
10.15 MB
qorts_output
Directory
featureCounts
results
Directory
featureCounts_rc.txt.summary
359 B
ZAG402A96_S68_L003_R1_001_preprocessed_fpkm.tab.gz
374.21 kB
ZAG402A96_S68_L003_R1_001_preprocessed_tpm.tab.gz
373.62 kB
ZAG402A96_S68_L003_R1_001_preprocessed_rc.tab.gz
242.24 kB
ZAG402A96_S68_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A96_S68_L003_R1_001_preprocessed_cpm.tab.gz
243.59 kB
ZAG402A96_S68_L003_R1_001_preprocessed_expressions.txt.gz
1.02 MB
STAR
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.bam
1.64 MB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.bam.bai
2.99 kB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_SJ.out.tab
42.49 kB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.28 MB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
featureCounts_rc.txt.summary
359 B
ZAG402A96_S68_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.43 MB
ZAG402A96_S68_L003_R1_001_preprocessed_rc.tab.gz
242.53 kB
ZAG402A96_S68_L003_R1_001_preprocessed_fpkm.tab.gz
378.24 kB
ZAG402A96_S68_L003_R1_001_preprocessed_tpm.tab.gz
377.39 kB
ZAG402A96_S68_L003_R1_001_preprocessed_expressions.txt.gz
1.03 MB
ZAG402A96_S68_L003_R1_001_preprocessed_cpm.tab.gz
247.71 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A96_S68_L003_R1_001_statistics.txt.gz
493 B
ZAG402A96_S68_L003_R1_001_preprocessed.fastq.gz
606.72 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.fastq.gz
49.74 MB
STAR
ZAG402A96_S68_L003_R1_001_preprocessed.bam.bai
3.68 MB
ZAG402A96_S68_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
71.35 MB
ZAG402A96_S68_L003_R1_001_preprocessed.bam
910.05 MB
ZAG402A96_S68_L003_R1_001_preprocessed_SJ.out.tab
5.89 MB
ZAG402A96_S68_L003_R1_001_preprocessed_stats.txt
1.82 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Subsample FASTQ (single-end)
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.fastq.gz
46.30 MB
fastqc
Directory
STAR
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.78 MB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.bam
1.90 MB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.37 kB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.bam
1.52 MB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
48.74 MB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled.bam.bai
3.28 kB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_SJ.out.tab
35.02 kB
ZAG402A96_S68_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
BBDuk (single-end)
ZAG402A96_S68_L003_R1_001_statistics.txt.gz
960 B
fastqc
Directory
ZAG402A96_S68_L003_R1_001_preprocessed.fastq.gz
518.00 MB
STAR
ZAG402A96_S68_L003_R1_001_preprocessed.bam
833.58 MB
ZAG402A96_S68_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
54.23 MB
ZAG402A96_S68_L003_R1_001_preprocessed_stats.txt
1.82 kB
ZAG402A96_S68_L003_R1_001_preprocessed.bam.bai
3.07 MB
ZAG402A96_S68_L003_R1_001_preprocessed_SJ.out.tab
4.57 MB

1. Chromatin, TIR1, siCTRL, aux

FASTQ file (single-end)
fastqc
Directory
ZAG402A49_S21_L003_R1_001.fastq.gz
379.91 MB
stderr.txt
1.09 kB
ZAG402A49_S21_L003_R1_001_fastqc.zip
436.11 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A49_S21_L003_R1_001_preprocessed.fastq.gz
318.88 MB
ZAG402A49_S21_L003_R1_001_statistics.txt.gz
480 B
STAR
ZAG402A49_S21_L003_R1_001_preprocessed.bam.bai
3.73 MB
ZAG402A49_S21_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
30.19 MB
ZAG402A49_S21_L003_R1_001_preprocessed.bam
482.35 MB
ZAG402A49_S21_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A49_S21_L003_R1_001_preprocessed_SJ.out.tab
3.35 MB
Subsample FASTQ (single-end)
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.fastq.gz
53.77 MB
fastqc
Directory
BBDuk (single-end)
fastqc
Directory
ZAG402A49_S21_L003_R1_001_preprocessed.fastq.gz
275.57 MB
ZAG402A49_S21_L003_R1_001_statistics.txt.gz
789 B
Samtools idxstats
idxstat_report.txt
5.93 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
9.36 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
featureCounts_rc.txt.summary
358 B
ZAG402A49_S21_L003_R1_001_preprocessed_fpkm.tab.gz
366.89 kB
ZAG402A49_S21_L003_R1_001_preprocessed_rc.tab.gz
234.85 kB
ZAG402A49_S21_L003_R1_001_preprocessed_cpm.tab.gz
220.95 kB
ZAG402A49_S21_L003_R1_001_preprocessed_tpm.tab.gz
366.86 kB
ZAG402A49_S21_L003_R1_001_preprocessed_expressions.txt.gz
998.02 kB
ZAG402A49_S21_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
STAR
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.55 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam
2.12 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.17 kB
STAR
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.25 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam
2.43 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam.bai
4.89 kB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_SJ.out.tab
51.46 kB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.fastq.gz
48.65 MB
STAR
ZAG402A49_S21_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
24.34 MB
ZAG402A49_S21_L003_R1_001_preprocessed.bam.bai
2.85 MB
ZAG402A49_S21_L003_R1_001_preprocessed.bam
459.91 MB
ZAG402A49_S21_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A49_S21_L003_R1_001_preprocessed_SJ.out.tab
2.88 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
STAR
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.63 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam
2.03 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_SJ.out.tab
10.08 kB
STAR
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
47.14 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam
2.74 MB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled.bam.bai
5.09 kB
ZAG402A49_S21_L003_R1_001_preprocessed_downsampled_SJ.out.tab
61.90 kB
featureCounts
ZAG402A49_S21_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A49_S21_L003_R1_001_preprocessed_rc.tab.gz
234.70 kB
featureCounts_rc.txt.summary
358 B
ZAG402A49_S21_L003_R1_001_preprocessed_fpkm.tab.gz
368.60 kB
ZAG402A49_S21_L003_R1_001_preprocessed_tpm.tab.gz
369.04 kB
ZAG402A49_S21_L003_R1_001_preprocessed_cpm.tab.gz
220.08 kB
ZAG402A49_S21_L003_R1_001_preprocessed_expressions.txt.gz
1002.06 kB
results
Directory

6. Chromatin, TIR1, siMATR3, aux

Samtools idxstats
idxstat_report.txt
5.88 kB
featureCounts
featureCounts_rc.txt.summary
357 B
ZAG402A54_S26_L003_R1_001_preprocessed_rc.tab.gz
228.67 kB
results
Directory
ZAG402A54_S26_L003_R1_001_preprocessed_cpm.tab.gz
205.82 kB
ZAG402A54_S26_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A54_S26_L003_R1_001_preprocessed_tpm.tab.gz
320.92 kB
ZAG402A54_S26_L003_R1_001_preprocessed_expressions.txt.gz
874.80 kB
ZAG402A54_S26_L003_R1_001_preprocessed_fpkm.tab.gz
320.13 kB
BBDuk (single-end)
fastqc
Directory
ZAG402A54_S26_L003_R1_001_preprocessed.fastq.gz
148.41 MB
ZAG402A54_S26_L003_R1_001_statistics.txt.gz
715 B
Subsample FASTQ (single-end)
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.fastq.gz
47.71 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
5.89 kB
STAR
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam.bai
5.05 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
46.23 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam
2.61 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_SJ.out.tab
61.30 kB
STAR
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.51 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam
3.17 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_SJ.out.tab
14.81 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
STAR
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam
2.27 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_SJ.out.tab
50.81 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.20 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam.bai
4.78 kB
featureCounts
ZAG402A54_S26_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.41 MB
ZAG402A54_S26_L003_R1_001_preprocessed_rc.tab.gz
228.59 kB
featureCounts_rc.txt.summary
357 B
ZAG402A54_S26_L003_R1_001_preprocessed_fpkm.tab.gz
317.10 kB
ZAG402A54_S26_L003_R1_001_preprocessed_tpm.tab.gz
317.49 kB
ZAG402A54_S26_L003_R1_001_preprocessed_expressions.txt.gz
867.30 kB
ZAG402A54_S26_L003_R1_001_preprocessed_cpm.tab.gz
205.72 kB
FASTQ file (single-end)
ZAG402A54_S26_L003_R1_001.fastq.gz
206.62 MB
stderr.txt
1.09 kB
fastqc
Directory
ZAG402A54_S26_L003_R1_001_fastqc.zip
434.64 kB
QoRTs QC
qorts_report.zip
8.67 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (single-end)
fastqc
Directory
ZAG402A54_S26_L003_R1_001_statistics.txt.gz
466 B
ZAG402A54_S26_L003_R1_001_preprocessed.fastq.gz
171.61 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.fastq.gz
52.68 MB
STAR
ZAG402A54_S26_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
18.81 MB
ZAG402A54_S26_L003_R1_001_preprocessed.bam
271.38 MB
ZAG402A54_S26_L003_R1_001_preprocessed.bam.bai
3.67 MB
ZAG402A54_S26_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A54_S26_L003_R1_001_preprocessed_SJ.out.tab
2.32 MB
ZAG402A54_S26_L003_R1_001_preprocessed.bw
11.62 MB
MultiQC
multiqc_report.html
1.20 MB
multiqc_data
Directory
STAR
ZAG402A54_S26_L003_R1_001_preprocessed.bam.bai
2.72 MB
ZAG402A54_S26_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
14.94 MB
ZAG402A54_S26_L003_R1_001_preprocessed.bam
259.47 MB
ZAG402A54_S26_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A54_S26_L003_R1_001_preprocessed_SJ.out.tab
1.97 MB
ZAG402A54_S26_L003_R1_001_preprocessed.bw
12.29 MB
STAR
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled.bam
3.07 MB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.86 kB
ZAG402A54_S26_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.83 MB

12. Chromatin, XRN2, siCTRL, dmso

Samtools idxstats
idxstat_report.txt
5.93 kB
Samtools idxstats
idxstat_report.txt
5.94 kB
QoRTs QC
qorts_report.zip
9.34 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A60_S32_L003_R1_001_preprocessed.bam.bai
3.76 MB
ZAG402A60_S32_L003_R1_001_preprocessed.bam
525.39 MB
ZAG402A60_S32_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
38.52 MB
ZAG402A60_S32_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A60_S32_L003_R1_001_preprocessed_SJ.out.tab
3.53 MB
FASTQ file (single-end)
fastqc
Directory
ZAG402A60_S32_L003_R1_001.fastq.gz
419.07 MB
ZAG402A60_S32_L003_R1_001_fastqc.zip
436.31 kB
stderr.txt
1.09 kB
STAR
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.11 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.39 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam
2.16 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
STAR
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam.bai
4.98 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.82 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam
2.51 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_SJ.out.tab
51.16 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
featureCounts
ZAG402A60_S32_L003_R1_001_preprocessed_fpkm.tab.gz
358.63 kB
featureCounts_rc.txt.summary
358 B
ZAG402A60_S32_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A60_S32_L003_R1_001_preprocessed_rc.tab.gz
234.98 kB
ZAG402A60_S32_L003_R1_001_preprocessed_tpm.tab.gz
359.15 kB
ZAG402A60_S32_L003_R1_001_preprocessed_cpm.tab.gz
221.86 kB
ZAG402A60_S32_L003_R1_001_preprocessed_expressions.txt.gz
981.47 kB
STAR
ZAG402A60_S32_L003_R1_001_preprocessed.bam
495.71 MB
ZAG402A60_S32_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
30.48 MB
ZAG402A60_S32_L003_R1_001_preprocessed.bam.bai
2.87 MB
ZAG402A60_S32_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A60_S32_L003_R1_001_preprocessed_SJ.out.tab
2.92 MB
Subsample FASTQ (single-end)
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.fastq.gz
51.30 MB
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
ZAG402A60_S32_L003_R1_001_preprocessed_rc.tab.gz
234.88 kB
results
Directory
ZAG402A60_S32_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
featureCounts_rc.txt.summary
358 B
ZAG402A60_S32_L003_R1_001_preprocessed_tpm.tab.gz
362.00 kB
ZAG402A60_S32_L003_R1_001_preprocessed_fpkm.tab.gz
361.23 kB
ZAG402A60_S32_L003_R1_001_preprocessed_expressions.txt.gz
987.32 kB
ZAG402A60_S32_L003_R1_001_preprocessed_cpm.tab.gz
221.36 kB
BBDuk (single-end)
ZAG402A60_S32_L003_R1_001_preprocessed.fastq.gz
295.61 MB
fastqc
Directory
ZAG402A60_S32_L003_R1_001_statistics.txt.gz
814 B
BBDuk (single-end)
fastqc
Directory
ZAG402A60_S32_L003_R1_001_statistics.txt.gz
482 B
ZAG402A60_S32_L003_R1_001_preprocessed.fastq.gz
341.80 MB
STAR
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam
2.12 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.84 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.44 kB
STAR
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam.bai
5.16 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.bam
2.79 MB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_SJ.out.tab
62.49 kB
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.38 MB
Subsample FASTQ (single-end)
ZAG402A60_S32_L003_R1_001_preprocessed_downsampled.fastq.gz
46.87 MB
fastqc
Directory

11. Chromatin, XRN2, siCTRL, dmso

Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.fastq.gz
51.64 MB
Subsample FASTQ (single-end)
fastqc
Directory
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.fastq.gz
47.19 MB
STAR
ZAG402A59_S31_L003_R1_001_preprocessed.bam.bai
2.91 MB
ZAG402A59_S31_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
27.32 MB
ZAG402A59_S31_L003_R1_001_preprocessed.bam
460.31 MB
ZAG402A59_S31_L003_R1_001_preprocessed_stats.txt
1.81 kB
ZAG402A59_S31_L003_R1_001_preprocessed_SJ.out.tab
2.75 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.20 MB
STAR
ZAG402A59_S31_L003_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
34.36 MB
ZAG402A59_S31_L003_R1_001_preprocessed.bam
488.14 MB
ZAG402A59_S31_L003_R1_001_preprocessed.bam.bai
3.80 MB
ZAG402A59_S31_L003_R1_001_preprocessed_SJ.out.tab
3.31 MB
ZAG402A59_S31_L003_R1_001_preprocessed_stats.txt
1.81 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
358 B
ZAG402A59_S31_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A59_S31_L003_R1_001_preprocessed_fpkm.tab.gz
358.12 kB
ZAG402A59_S31_L003_R1_001_preprocessed_rc.tab.gz
234.44 kB
ZAG402A59_S31_L003_R1_001_preprocessed_tpm.tab.gz
358.09 kB
ZAG402A59_S31_L003_R1_001_preprocessed_cpm.tab.gz
219.51 kB
ZAG402A59_S31_L003_R1_001_preprocessed_expressions.txt.gz
978.11 kB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
STAR
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam
2.45 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
49.15 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_SJ.out.tab
12.69 kB
STAR
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
50.24 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam.bai
4.52 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam
2.24 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_SJ.out.tab
48.64 kB
FASTQ file (single-end)
fastqc
Directory
ZAG402A59_S31_L003_R1_001.fastq.gz
384.19 MB
ZAG402A59_S31_L003_R1_001_fastqc.zip
430.40 kB
stderr.txt
1.09 kB
featureCounts
ZAG402A59_S31_L003_R1_001_preprocessed_rc.tab.gz
234.64 kB
ZAG402A59_S31_L003_R1_001_preprocessed_fpkm.tab.gz
355.50 kB
featureCounts_rc.txt.summary
358 B
ZAG402A59_S31_L003_R1_001_preprocessed_featureCounts_rc.txt.gz
4.42 MB
ZAG402A59_S31_L003_R1_001_preprocessed_tpm.tab.gz
355.67 kB
ZAG402A59_S31_L003_R1_001_preprocessed_cpm.tab.gz
220.07 kB
ZAG402A59_S31_L003_R1_001_preprocessed_expressions.txt.gz
972.53 kB
QoRTs QC
qorts_report.zip
9.26 MB
qorts_output
Directory
Samtools idxstats
idxstat_report.txt
5.93 kB
BBDuk (single-end)
ZAG402A59_S31_L003_R1_001_statistics.txt.gz
481 B
fastqc
Directory
ZAG402A59_S31_L003_R1_001_preprocessed.fastq.gz
315.70 MB
BBDuk (single-end)
ZAG402A59_S31_L003_R1_001_statistics.txt.gz
852 B
fastqc
Directory
ZAG402A59_S31_L003_R1_001_preprocessed.fastq.gz
273.60 MB
Samtools idxstats
idxstat_report.txt
5.92 kB
STAR
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
44.92 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam
2.36 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam.bai
336 B
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_SJ.out.tab
11.34 kB
STAR
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam.bai
4.94 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
45.79 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled.bam
2.51 MB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_stats.txt
1.79 kB
ZAG402A59_S31_L003_R1_001_preprocessed_downsampled_SJ.out.tab
57.31 kB