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CDKs iCLIP test
Rahul Arora
June 27, 2019
iCLIP was performed as previously described 3 with only minor modifications described below. Briefly, F-CDK11 293 Flp-in cells as well as F-CDK11 (226-783) 293 Flp-in cells were plated onto 150 cm2 plates to reach 75% confluency at the day of crosslinking. CDK11 was induced with 1 µg/ml of doxycycline 24 h before crosslinking. We used two methods to crosslink RNA and proteins: either by UV-C (254 nm, 200 mJ/cm2) or by UV-A (365 nm, 200 mJ/cm2) after 100 µM final concentration of 4-thiouridine (Sigma, T4509) was added to the cells 6-8 h prior to the crosslinking. Cells from one 150 cm2 plate were used per one immunoprecipitation and two technical replicates were performed for each condition, both of them were mixed together after reverse transcription step. Composition of all buffers was the same as described in 3. Each cell pellet (originally from one 150 cm2 plate) was lysed in 1 ml of lysis buffer and the lysate was homogenized by passing three-times through an insulin syringe (B.BROWN, Omnican U-100, 32G). Lysate was treated with 4 U/ml Turbo DNase (Thermo Fisher Scientific, AM2238), 12 U/ml RNase I (Thermo Fisher Scientific, AM2295) shaking at 1100 rpm and 37°C for 3 min. Clarified extracts (21000g for 30 min) were incubated for 2 h with 2 µg of flag antibody (Sigma, F1804) pre-bound to 50 µl of protein G Dynabeads. After series of stringent washes, adenylated L3 RNA adapter was ligated to the 3’end of crosslinked RNAs. Crosslinked protein-RNA complexes were resolved by SDS-PAGE (NuPAGE 4-12% Bis-Tris Protein Gel, Thermo Fisher Scientific, NP0322) and transferred to nitrocellulose membrane. The region of the membrane containing the radioactively labeled crosslinked protein–RNA complexes was excised, RNA was isolated and reverse transcribed to cDNA (technical replicates were mixed together after this step). cDNA was size-selected using urea denaturing gel electrophoresis and three fractions running between 70-85 nt (L-low), 85-120 nt (M-medium) and 120-200 nt (H-high) were isolated. Each fraction was independently circularized by single-stranded DNA ligase, annealed to an oligonucleotide complementary to the restriction site and cut between the two adapter regions by BamHI. After final PCR amplification using P3 and P5 Solexa primers all three fractions were pooled together in ratio 1:5:5 (L:M:H). Multiplexed libraries were sequenced as 50bp single-end reads on Illumina sequencer (EMBL, Heidelberg).
CEAB6ANXX_3_20200630B_20200701_122701.fastq.gz
FASTQ file (single-end)
CEAB6ANXX_3_20200630B_20200701_122701_fastqc.zip
505.98 kB
CEAB6ANXX_3_20200630B_20200701_122701.fastq.gz
3.03 GB
CEAB6ANXX_4_20200630B_20200701_122702.fastq.gz
FASTQ file (single-end)
CEAB6ANXX_4_20200630B_20200701_122702.fastq.gz
2.48 GB
CEAB6ANXX_4_20200630B_20200701_122702_fastqc.zip
430.86 kB
demux_nomatch.fastq.gz
FASTQ file (CLIP)
demux_nomatch_fastqc.zip
409.17 kB
demux_nomatch.fastq.gz
151.71 MB
demux_nomatch.fastq.gz
FASTQ file (CLIP)
demux_nomatch_fastqc.zip
452.03 kB
demux_nomatch.fastq.gz
208.38 MB
Cyclins_and_CDKs.fastq.gz
FASTQ file (single-end)
Cyclins_and_CDKs.fastq.gz
5.10 GB
Cyclins_and_CDKs_fastqc.zip
452.82 kB
CDK11b_293Flp_1del226_nFLAG_4SU_365_20150611_Bz1
FASTQ file (single-end)
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1.fastq.gz
66.45 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_fastqc.zip
429.21 kB
iCount RNA-maps
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single.tar.gz
876.71 kB
PEKA
4mer analysis of cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome.tar.gz
336.04 kB
Cutadapt (single-end)
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed.fastq.gz
67.69 MB
STAR
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
13.30 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed.bam.bai
3.35 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed.bam
144.12 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed_stats.txt
1.81 kB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed.bw
37.01 kB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed_SJ.out.tab
314.43 kB
iCount xlsites
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single.bed.gz
1.72 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single.bedgraph
7.41 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_reads_single.bed.gz
1.87 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
3.24 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_skipped.bam
2.90 kB
iCount summary
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_type.tsv
435 B
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
1012 B
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
1.38 MB
Paraclu
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
9.38 kB
CDK11b_293Flp_nFLAG_noUV_20150611_Bz1
FASTQ file (single-end)
cdk11b-293flp-nflag-nouv-20150611-bz1.fastq.gz
7.73 MB
cdk11b-293flp-nflag-nouv-20150611-bz1_fastqc.zip
504.17 kB
iCount RNA-maps
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single.tar.gz
406.82 kB
Paraclu
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
1.14 kB
PEKA
4mer analysis of cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome.tar.gz
168 B
Cutadapt (single-end)
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed.fastq.gz
5.39 MB
STAR
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
1.74 MB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed.bam.bai
1.78 MB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed_stats.txt
1.79 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed_SJ.out.tab
18.69 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed.bam
14.00 MB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed.bw
21.03 kB
iCount xlsites
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
352.36 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_reads_single.bed.gz
72.86 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single.bed.gz
68.80 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single.bedgraph
242.61 kB
iCount summary
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single_summary_type.tsv
418 B
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
308.09 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
975 B
CDK11_20150611_Bz1.fastq.gz
FASTQ file (single-end)
CDK11_20150611_Bz1.fastq.gz
753.24 MB
CDK11_20150611_Bz1_fastqc.zip
459.17 kB
CDK11_20160908_Blazek.fastq.gz
FASTQ file (single-end)
CDK11_20160908_Blazek.fastq.gz
1.52 GB
CDK11_20160908_Blazek_fastqc.zip
444.99 kB
CDK11b_293Flp_nFLAG_254_20150611_Bz1
PEKA
4mer analysis of cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome.tar.gz
366.52 kB
FASTQ file (single-end)
cdk11b-293flp-nflag-254-20150611-bz1_fastqc.zip
417.94 kB
cdk11b-293flp-nflag-254-20150611-bz1.fastq.gz
109.53 MB
Paraclu
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
20.69 kB
iCount RNA-maps
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single.tar.gz
1.23 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-254-20150611-bz1_trimmed.fastq.gz
105.46 MB
STAR
cdk11b-293flp-nflag-254-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
13.27 MB
cdk11b-293flp-nflag-254-20150611-bz1_trimmed.bam
356.24 MB
cdk11b-293flp-nflag-254-20150611-bz1_trimmed.bam.bai
3.48 MB
cdk11b-293flp-nflag-254-20150611-bz1_trimmed_SJ.out.tab
744.52 kB
cdk11b-293flp-nflag-254-20150611-bz1_trimmed_stats.txt
1.81 kB
iCount xlsites
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_skipped.bam
3.06 kB
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_reads_single.bed.gz
2.58 MB
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
4.63 MB
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single.bed.gz
2.35 MB
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single.bedgraph
10.49 MB
iCount summary
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
1016 B
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single_summary_type.tsv
444 B
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
1.47 MB
CDK11b_293Flp_nFLAG_4SU_365_noAb_20150611_Bz1
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1.fastq.gz
4.33 MB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_fastqc.zip
512.99 kB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed.fastq.gz
1.55 MB
iCount summary
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
287.15 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
961 B
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single_summary_type.tsv
417 B
Paraclu
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
513 B
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome.tar.gz
173 B
STAR
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed.bam.bai
1.67 MB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed.bam
2.87 MB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed_stats.txt
1.79 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed_SJ.out.tab
7.18 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed.bw
19.51 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
737.99 kB
iCount xlsites
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
137.32 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single.bed.gz
50.93 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single.bedgraph
179.17 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_reads_single.bed.gz
54.42 kB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single.tar.gz
381.11 kB
demux_nomatch.fastq.gz
FASTQ file (single-end)
demux_nomatch.fastq.gz
188.95 MB
demux_nomatch_fastqc.zip
400.07 kB
CDK11b_293Flp_nFLAG_noUV_20160908_Blazek
FASTQ file (single-end)
cdk11b-293flp-nflag-nouv-20160908-blazek_fastqc.zip
520.11 kB
cdk11b-293flp-nflag-nouv-20160908-blazek.fastq.gz
8.76 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed.fastq.gz
4.89 MB
iCount summary
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
903 B
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single_summary_type.tsv
414 B
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
167.51 kB
iCount RNA-maps
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single.tar.gz
359.33 kB
Paraclu
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
381 B
PEKA
4mer analysis of cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome.tar.gz
172 B
STAR
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed.bam.bai
1.69 MB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
2.77 MB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed.bam
12.67 MB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed_stats.txt
1.79 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed.bw
20.59 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed_SJ.out.tab
10.17 kB
iCount xlsites
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single.bed.gz
32.45 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
272.74 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single.bedgraph
110.75 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_reads_single.bed.gz
34.83 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_skipped.bam
2.90 kB
CDK11b_293Flp_nFLAG_4SU_365_noAb_20160908_Blazek
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek.fastq.gz
27.99 MB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_fastqc.zip
495.75 kB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single.tar.gz
441.07 kB
Paraclu
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
530 B
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome.tar.gz
60.21 kB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed.fastq.gz
7.88 MB
STAR
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed_stats.txt
1.79 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed.bam
17.23 MB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed.bam.bai
2.12 MB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed_SJ.out.tab
27.93 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
3.17 MB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed.bw
22.52 kB
iCount xlsites
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single.bed.gz
162.35 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_reads_single.bed.gz
181.11 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
482.21 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single.bedgraph
609.56 kB
iCount summary
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single_summary_type.tsv
417 B
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
980 B
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
614.91 kB
CDK11b_293Flp_nFLAG_4SU_365_20181026_Blazek
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-20181026-blazek.fastq.gz
414.62 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_fastqc.zip
388.71 kB
iCount xlsites
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
15.74 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
10.69 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
42.52 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
3.34 kB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
9.43 MB
Paraclu
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
76.97 kB
iCount summary
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
444 B
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.15 MB
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
476.91 kB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
2.24 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
422.13 MB
STAR
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
96.70 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed.bam.bai
3.87 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
2.10 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.81 kB
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed.bam
723.96 MB
CDK11b_293Flp_226del783_nFLAG_4SU_365_20160908_Blazek
FASTQ file (single-end)
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_fastqc.zip
375.67 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek.fastq.gz
127.08 MB
Cutadapt (single-end)
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed.fastq.gz
129.22 MB
iCount RNA-maps
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single.tar.gz
1.75 MB
Paraclu
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
18.58 kB
PEKA
4mer analysis of cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome.tar.gz
383.11 kB
STAR
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
26.47 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed_stats.txt
1.81 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed.bam
188.85 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed.bam.bai
3.77 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed.bw
56.07 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed_SJ.out.tab
1.19 MB
iCount xlsites
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_skipped.bam
3.43 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bed.gz
4.90 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_reads_single.bed.gz
5.50 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
8.32 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bedgraph
22.36 MB
iCount summary
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_type.tsv
441 B
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
1021 B
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
1.70 MB
CDK11b_293Flp_226del783_nFLAG_4SU_365_20160908_Blazek_1
FASTQ file (single-end)
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1.fastq.gz
83.18 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_fastqc.zip
411.61 kB
iCount RNA-maps
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single.tar.gz
1.25 MB
PEKA
4mer analysis of cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome.tar.gz
341.08 kB
Cutadapt (single-end)
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed.fastq.gz
69.95 MB
STAR
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed_unmapped.out.mate1.fastq.gz
14.40 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed.bam.bai
3.56 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed.bw
40.90 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed.bam
105.04 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed_SJ.out.tab
664.92 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed_stats.txt
1.81 kB
iCount xlsites
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single.bed.gz
2.48 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_reads_single.bed.gz
2.81 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_singleAndMulti.bed.gz
4.52 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single.bedgraph
11.03 MB
iCount summary
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single_summary_type.tsv
440 B
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single_summary_subtype.tsv
1010 B
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single_summary_gene.tsv
1.46 MB
Paraclu
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single_peaks.bed.gz
2.74 kB
No Sample
FASTQ file (single-end)
cdk11b-293flp-nflag-254-20150611-bz1.fastq.gz
109.53 MB
cdk11b-293flp-nflag-254-20150611-bz1_fastqc.zip
417.94 kB
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-20150611-bz1_fastqc.zip
399.24 kB
cdk11b-293flp-nflag-4su-365-20150611-bz1.fastq.gz
259.13 MB
FASTQ file (single-end)
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1.fastq.gz
83.18 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_fastqc.zip
411.61 kB
iCount xlsites
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.bed.gz
9.00 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_reads_single.bed.gz
10.00 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.bedgraph
39.48 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_skipped.bam
4.29 kB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
24.69 MB
Paraclu
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
34.37 kB
iCount xlsites
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
23.52 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
109.06 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
5.22 kB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
25.92 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
41.72 MB
Paraclu
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
306.70 kB
iCount xlsites
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
3.82 kB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
13.42 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
14.99 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
22.29 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
61.75 MB
PEKA
4mer analysis of cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome.tar.gz
366.52 kB
iCount xlsites
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
19.73 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_reads_single.bed.gz
8.49 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_skipped.bam
3.58 kB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.bed.gz
7.48 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.bedgraph
32.41 MB
iCount RNA-maps
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.tar.gz
1.43 MB
iCount xlsites
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
15.74 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
10.69 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
42.52 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
3.34 kB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
9.43 MB
Paraclu
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
76.97 kB
Paraclu
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
1.38 kB
iCount RNA-maps
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.tar.gz
479.90 kB
iCount RNA-maps
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.tar.gz
1.16 MB
iCount summary
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_type.tsv
441 B
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.02 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
iCount summary
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_type.tsv
444 B
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.34 MB
iCount summary
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
448 B
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.59 MB
iCount summary
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single_summary_type.tsv
425 B
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.15 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
991 B
FASTQ file (single-end)
demux_nomatch_fastqc.zip
387.47 kB
demux_nomatch.fastq.gz
1.08 GB
iCount summary
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
447 B
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.18 MB
Paraclu
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
128.10 kB
iCount summary
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1021 B
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.17 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_type.tsv
434 B
Paraclu
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
18.28 kB
iCount summary
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
444 B
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.15 MB
PEKA
4mer analysis of cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
137.98 kB
PEKA
4mer analysis of ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome.tar.gz
443.07 kB
PEKA
4mer analysis of ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome.tar.gz
335.92 kB
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
476.91 kB
FASTQ file (single-end)
CDK11_20150611_Bz1.fastq.gz
753.24 MB
CDK11_20150611_Bz1_fastqc.zip
459.17 kB
Upload iCount sample annotation
Blazek_2015_annotation_sheet.xlsx
15.58 kB
Blazek_2015_annotation_sheet.tab.gz
1.87 kB
FASTQ file (single-end)
CDK11_20160908_Blazek.fastq.gz
1.52 GB
CDK11_20160908_Blazek_fastqc.zip
444.99 kB
Upload iCount sample annotation
Blazek_2018_annotation_file.xlsx
16.84 kB
Blazek_2018_annotation_file.tab.gz
2.12 kB
Upload iCount sample annotation
Blazek_2016_annotation_sheet.tab.gz
1.96 kB
Blazek_2016_annotation_sheet.xlsx
16.00 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
732 B
FASTQ file (single-end)
Cyclins_and_CDKs.fastq.gz
5.10 GB
Cyclins_and_CDKs_fastqc.zip
452.82 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
988 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
554 B
FASTQ file (single-end)
cdk11b-293flp-nflag-nouv-20150611-bz1.fastq.gz
7.73 MB
cdk11b-293flp-nflag-nouv-20150611-bz1_fastqc.zip
504.17 kB
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-20160908-blazek.fastq.gz
176.31 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_fastqc.zip
385.10 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
627.84 MB
demux_nomatch_fastqc.zip
391.61 kB
FASTQ file (single-end)
cdk11b-293flp-nflag-254-20160908-blazek.fastq.gz
206.99 MB
cdk11b-293flp-nflag-254-20160908-blazek_fastqc.zip
425.79 kB
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek.fastq.gz
27.99 MB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_fastqc.zip
495.75 kB
FASTQ file (single-end)
cdk11b-293flp-1del226-nflag-254-20150611-bz1_fastqc.zip
448.45 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1.fastq.gz
18.81 MB
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1.fastq.gz
4.33 MB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_fastqc.zip
512.99 kB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed.fastq.gz
1.55 MB
iCount summary
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
287.15 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
961 B
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single_summary_type.tsv
417 B
Paraclu
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
513 B
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome.tar.gz
173 B
iCount summary
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
1003.05 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single_summary_type.tsv
428 B
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
987 B
iCount RNA-maps
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single.tar.gz
565.79 kB
PEKA
4mer analysis of cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome.tar.gz
274.47 kB
Paraclu
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
20.69 kB
iCount RNA-maps
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single.tar.gz
1.23 MB
iCount RNA-maps
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single.tar.gz
406.82 kB
Paraclu
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
1.14 kB
PEKA
4mer analysis of cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome.tar.gz
168 B
FASTQ file (single-end)
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1.fastq.gz
66.45 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_fastqc.zip
429.21 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
188.95 MB
demux_nomatch_fastqc.zip
400.07 kB
iCount RNA-maps
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single.tar.gz
876.71 kB
PEKA
4mer analysis of cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome.tar.gz
336.04 kB
Paraclu
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
78.29 kB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single.tar.gz
2.23 MB
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome.tar.gz
446.37 kB
FASTQ file (single-end)
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek.fastq.gz
18.20 MB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_fastqc.zip
424.82 kB
FASTQ file (single-end)
cdk11b-293flp-nflag-nouv-20160908-blazek_fastqc.zip
520.11 kB
cdk11b-293flp-nflag-nouv-20160908-blazek.fastq.gz
8.76 MB
FASTQ file (single-end)
cdk11b-293flp-1del226-nflag-254-20160908-blazek.fastq.gz
34.10 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_fastqc.zip
428.18 kB
FASTQ file (single-end)
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_fastqc.zip
375.67 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek.fastq.gz
127.08 MB
iCount RNA-maps
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single.tar.gz
1.25 MB
PEKA
4mer analysis of cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome.tar.gz
341.08 kB
Cutadapt (single-end)
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed.fastq.gz
129.22 MB
iCount RNA-maps
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single.tar.gz
1.75 MB
Paraclu
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
18.58 kB
PEKA
4mer analysis of cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome.tar.gz
383.11 kB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single.tar.gz
441.07 kB
Paraclu
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
530 B
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome.tar.gz
60.21 kB
iCount summary
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single_summary_type.tsv
433 B
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
994 B
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
1022.09 kB
iCount RNA-maps
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single.tar.gz
593.97 kB
PEKA
4mer analysis of cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome.tar.gz
278.61 kB
iCount RNA-maps
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single.tar.gz
1.47 MB
PEKA
4mer analysis of cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome.tar.gz
371.59 kB
Paraclu
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
18.20 kB
Cutadapt (single-end)
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed.fastq.gz
4.89 MB
iCount summary
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
903 B
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single_summary_type.tsv
414 B
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
167.51 kB
iCount RNA-maps
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single.tar.gz
359.33 kB
Paraclu
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
381 B
PEKA
4mer analysis of cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome.tar.gz
172 B
iCount RNA-maps
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single.tar.gz
543.22 kB
Paraclu
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
2.61 kB
PEKA
4mer analysis of cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome.tar.gz
270.28 kB
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome.tar.gz
411.28 kB
Paraclu
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
31.91 kB
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-20181026-blazek.fastq.gz
414.62 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_fastqc.zip
388.71 kB
FASTQ file (single-end)
cdk13-293flp-nflag-4su-365-20181026-blazek.fastq.gz
648.61 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_fastqc.zip
399.47 kB
FASTQ file (single-end)
ccnt2-293flp-cflag-4su-365-2-20181026-blazek.fastq.gz
345.05 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_fastqc.zip
395.59 kB
FASTQ file (single-end)
ccnt2-293flp-cflag-4su-365-1-20181026-blazek.fastq.gz
353.16 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_fastqc.zip
430.72 kB
FASTQ file (single-end)
cdk12-293flp-nflag-4su-365-20181026-blazek.fastq.gz
348.58 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_fastqc.zip
403.48 kB
Cutadapt (single-end)
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed.fastq.gz
18.92 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-254-20150611-bz1_trimmed.fastq.gz
105.46 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed.fastq.gz
5.39 MB
Cutadapt (single-end)
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed.fastq.gz
67.69 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed.fastq.gz
264.71 MB
Cutadapt (single-end)
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed.fastq.gz
69.95 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed.fastq.gz
7.88 MB
Cutadapt (single-end)
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed.fastq.gz
32.86 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-254-20160908-blazek_trimmed.fastq.gz
174.02 MB
Cutadapt (single-end)
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed.fastq.gz
18.29 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed.fastq.gz
178.55 MB
FASTQ file (single-end)
ccnt1-293flp-cflag-4su-365-2-20181026-blazek.fastq.gz
403.76 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_fastqc.zip
431.82 kB
FASTQ file (single-end)
ccnt1-293flp-cflag-nouv-20181026-blazek.fastq.gz
117.03 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_fastqc.zip
487.81 kB
FASTQ file (single-end)
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek.fastq.gz
417.16 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_fastqc.zip
383.03 kB
FASTQ file (single-end)
ccnt2-293flp-cflag-nouv-20181026-blazek.fastq.gz
90.34 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_fastqc.zip
496.36 kB
FASTQ file (single-end)
ccnt1-293flp-cflag-4su-365-1-20181026-blazek.fastq.gz
391.85 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_fastqc.zip
397.14 kB
FASTQ file (single-end)
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_fastqc.zip
464.65 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek.fastq.gz
27.97 MB
FASTQ file (single-end)
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_fastqc.zip
490.07 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek.fastq.gz
89.65 MB
iCount summary
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
422 B
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.10 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
990 B
Paraclu
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
576 B
iCount RNA-maps
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single.tar.gz
494.28 kB
PEKA
4mer analysis of ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome.tar.gz
134.62 kB
iCount summary
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
445 B
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.11 MB
iCount RNA-maps
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
2.29 MB
Paraclu
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
83.01 kB
PEKA
4mer analysis of cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
464.79 kB
Cutadapt (single-end)
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed.fastq.gz
30.98 MB
iCount summary
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_type.tsv
431 B
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.31 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
997 B
Paraclu
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
2.46 kB
PEKA
4mer analysis of ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome.tar.gz
218.56 kB
iCount RNA-maps
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
3.25 MB
PEKA
4mer analysis of cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
524.53 kB
iCount RNA-maps
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.tar.gz
1.43 MB
Paraclu
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
20.07 kB
iCount summary
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_type.tsv
440 B
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.86 MB
Paraclu
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
14.54 kB
PEKA
4mer analysis of ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome.tar.gz
427.87 kB
iCount summary
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1007 B
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_type.tsv
432 B
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.44 MB
iCount RNA-maps
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.tar.gz
613.82 kB
Paraclu
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
3.92 kB
iCount RNA-maps
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.tar.gz
1.70 MB
PEKA
4mer analysis of ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome.tar.gz
433.12 kB
PEKA
4mer analysis of ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome.tar.gz
442.90 kB
iCount RNA-maps
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
2.69 MB
PEKA
4mer analysis of cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
496.22 kB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
2.24 MB
STAR
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed.bam.bai
1.67 MB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed.bam
2.87 MB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed_stats.txt
1.79 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed_SJ.out.tab
7.18 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed.bw
19.51 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
737.99 kB
STAR
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
1.74 MB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed.bam.bai
1.78 MB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed_stats.txt
1.79 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed_SJ.out.tab
18.69 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed.bam
14.00 MB
cdk11b-293flp-nflag-nouv-20150611-bz1_trimmed.bw
21.03 kB
STAR
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
52.62 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed.bam
541.71 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed_stats.txt
1.81 kB
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed.bam.bai
3.82 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed_SJ.out.tab
1.67 MB
STAR
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed.bam.bai
2.47 MB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed_stats.txt
1.80 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
3.18 MB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed_SJ.out.tab
116.07 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed.bw
24.41 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed.bam
53.72 MB
STAR
cdk11b-293flp-nflag-254-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
13.27 MB
cdk11b-293flp-nflag-254-20150611-bz1_trimmed.bam
356.24 MB
cdk11b-293flp-nflag-254-20150611-bz1_trimmed.bam.bai
3.48 MB
cdk11b-293flp-nflag-254-20150611-bz1_trimmed_SJ.out.tab
744.52 kB
cdk11b-293flp-nflag-254-20150611-bz1_trimmed_stats.txt
1.81 kB
STAR
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
13.30 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed.bam.bai
3.35 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed.bam
144.12 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed_stats.txt
1.81 kB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed.bw
37.01 kB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_trimmed_SJ.out.tab
314.43 kB
STAR
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed_unmapped.out.mate1.fastq.gz
14.40 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed.bam.bai
3.56 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed.bw
40.90 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed.bam
105.04 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed_SJ.out.tab
664.92 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_trimmed_stats.txt
1.81 kB
STAR
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
26.47 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed_stats.txt
1.81 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed.bam
188.85 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed.bam.bai
3.77 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed.bw
56.07 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_trimmed_SJ.out.tab
1.19 MB
STAR
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed_stats.txt
1.79 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed.bam
17.23 MB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed.bam.bai
2.12 MB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed_SJ.out.tab
27.93 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
3.17 MB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_trimmed.bw
22.52 kB
STAR
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed.bam.bai
2.88 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
5.73 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed.bam
118.69 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed_SJ.out.tab
140.26 kB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed_stats.txt
1.80 kB
STAR
cdk11b-293flp-nflag-254-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
24.20 MB
cdk11b-293flp-nflag-254-20160908-blazek_trimmed.bam.bai
4.07 MB
cdk11b-293flp-nflag-254-20160908-blazek_trimmed_SJ.out.tab
1006.72 kB
cdk11b-293flp-nflag-254-20160908-blazek_trimmed.bam
623.37 MB
cdk11b-293flp-nflag-254-20160908-blazek_trimmed_stats.txt
1.81 kB
STAR
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed.bam.bai
1.69 MB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
2.77 MB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed.bam
12.67 MB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed_stats.txt
1.79 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed.bw
20.59 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_trimmed_SJ.out.tab
10.17 kB
STAR
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed.bam.bai
3.80 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
37.41 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed_stats.txt
1.81 kB
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed.bam
296.38 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed_SJ.out.tab
1.37 MB
Cutadapt (single-end)
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
354.49 MB
Cutadapt (single-end)
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
646.00 MB
STAR
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
5.60 MB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed_stats.txt
1.80 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed.bam
34.09 MB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed_SJ.out.tab
80.21 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed.bam.bai
2.59 MB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed.bw
25.13 kB
Cutadapt (single-end)
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
9.26 MB
Cutadapt (single-end)
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed.fastq.gz
18.50 MB
Cutadapt (single-end)
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed.fastq.gz
347.34 MB
Cutadapt (single-end)
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed.fastq.gz
357.14 MB
Cutadapt (single-end)
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed.fastq.gz
279.63 MB
Cutadapt (single-end)
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed.fastq.gz
392.43 MB
Cutadapt (single-end)
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed.fastq.gz
75.43 MB
Cutadapt (single-end)
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
423.46 MB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
422.13 MB
iCount xlsites
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_skipped.bam
3.07 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
1.04 MB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single.bedgraph
1.75 MB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_reads_single.bed.gz
475.43 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single.bed.gz
441.57 kB
iCount xlsites
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_skipped.bam
3.06 kB
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_reads_single.bed.gz
2.58 MB
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
4.63 MB
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single.bed.gz
2.35 MB
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single.bedgraph
10.49 MB
iCount xlsites
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
137.32 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single.bed.gz
50.93 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single.bedgraph
179.17 kB
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_reads_single.bed.gz
54.42 kB
iCount xlsites
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single.bed.gz
1.72 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single.bedgraph
7.41 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_reads_single.bed.gz
1.87 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
3.24 MB
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_skipped.bam
2.90 kB
iCount xlsites
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
352.36 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_reads_single.bed.gz
72.86 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single.bed.gz
68.80 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single.bedgraph
242.61 kB
iCount xlsites
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_skipped.bam
3.79 kB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
14.61 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single.bed.gz
8.59 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single.bedgraph
39.67 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_reads_single.bed.gz
9.34 MB
iCount xlsites
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single.bed.gz
2.48 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_reads_single.bed.gz
2.81 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_singleAndMulti.bed.gz
4.52 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single.bedgraph
11.03 MB
iCount xlsites
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_skipped.bam
3.43 kB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bed.gz
4.90 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_reads_single.bed.gz
5.50 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
8.32 MB
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bedgraph
22.36 MB
iCount xlsites
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single.bed.gz
162.35 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_reads_single.bed.gz
181.11 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
482.21 kB
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single.bedgraph
609.56 kB
iCount xlsites
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
1.40 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_reads_single.bed.gz
581.63 kB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single.bedgraph
2.05 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single.bed.gz
517.53 kB
iCount xlsites
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
7.03 MB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_skipped.bam
3.26 kB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single.bed.gz
3.56 MB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single.bedgraph
16.03 MB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_reads_single.bed.gz
4.02 MB
iCount xlsites
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single.bed.gz
32.45 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
272.74 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_single.bedgraph
110.75 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_reads_single.bed.gz
34.83 kB
cdk11b-293flp-nflag-nouv-20160908-blazek_mapped_to_genome_skipped.bam
2.90 kB
iCount xlsites
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bed.gz
426.34 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_reads_single.bed.gz
477.19 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
971.82 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bedgraph
1.67 MB
FASTQ file (CLIP)
demux_nomatch_fastqc.zip
409.17 kB
demux_nomatch.fastq.gz
151.71 MB
iCount xlsites
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_skipped.bam
3.45 kB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
10.01 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bedgraph
26.35 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bed.gz
5.76 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_reads_single.bed.gz
6.46 MB
STAR
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed.bam
60.77 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed.bam.bai
4.49 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed_stats.txt
1.80 kB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed_SJ.out.tab
42.63 kB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
9.98 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed.bw
53.34 kB
STAR
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
48.60 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed.bam.bai
4.40 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.81 kB
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed.bam
1.14 GB
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
2.05 MB
STAR
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed.bam.bai
3.59 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed.bam
16.73 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
2.36 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.80 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
29.14 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed.bw
44.31 kB
STAR
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed.bam.bai
3.98 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed_stats.txt
1.81 kB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed_SJ.out.tab
1006.73 kB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
59.27 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed.bam
591.48 MB
STAR
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed.bam
25.50 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed_SJ.out.tab
21.32 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
12.12 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed.bam.bai
4.03 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed.bw
45.58 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed_stats.txt
1.80 kB
STAR
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
132.07 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed.bam
1.26 GB
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.82 kB
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
3.15 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed.bam.bai
3.58 MB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-noab-20150611-bz1_mapped_to_genome_single.tar.gz
381.11 kB
iCount summary
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_type.tsv
435 B
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
1012 B
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
1.38 MB
iCount summary
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_type.tsv
444 B
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
1.95 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
Paraclu
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
4.75 kB
Paraclu
cdk11b-293flp-1del226-nflag-4su-365-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
9.38 kB
STAR
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
21.93 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed.bam.bai
4.27 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed_stats.txt
1.81 kB
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed.bam
152.22 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed_SJ.out.tab
204.59 kB
STAR
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed.bam.bai
3.35 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
96.95 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed_stats.txt
1.81 kB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed.bam
798.14 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed_SJ.out.tab
1.69 MB
STAR
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
96.70 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed.bam.bai
3.87 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
2.10 MB
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.81 kB
cdk11b-293flp-nflag-4su-365-20181026-blazek_trimmed.bam
723.96 MB
iCount summary
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
1016 B
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single_summary_type.tsv
444 B
cdk11b-293flp-nflag-254-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
1.47 MB
STAR
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed_stats.txt
1.81 kB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
63.84 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed.bam
474.55 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed.bam.bai
4.11 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed_SJ.out.tab
839.60 kB
iCount summary
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single_summary_type.tsv
440 B
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single_summary_subtype.tsv
1010 B
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single_summary_gene.tsv
1.46 MB
iCount summary
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single_summary_type.tsv
418 B
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
308.09 kB
cdk11b-293flp-nflag-nouv-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
975 B
Paraclu
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek-1_mapped_to_genome_single_peaks.bed.gz
2.74 kB
Paraclu
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
2.80 kB
iCount summary
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_type.tsv
441 B
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
1021 B
cdk11b-293flp-226del783-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
1.70 MB
iCount summary
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single_summary_type.tsv
438 B
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
1.56 MB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
1016 B
iCount summary
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single_summary_type.tsv
417 B
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
980 B
cdk11b-293flp-nflag-4su-365-noab-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
614.91 kB
STAR
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
94.87 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed_SJ.out.tab
1.21 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed.bam
712.14 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed.bam.bai
3.70 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed_stats.txt
1.81 kB
STAR
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
102.82 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed.bam
798.60 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed.bam.bai
3.78 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.81 kB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
2.73 MB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single.tar.gz
1.85 MB
iCount summary
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_type.tsv
444 B
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
1.78 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
1019 B
iCount summary
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
986 B
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_type.tsv
422 B
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
969.39 kB
iCount xlsites
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_skipped.bam
4.08 kB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.bed.gz
7.41 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
13.83 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_reads_single.bed.gz
8.44 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.bedgraph
32.40 MB
iCount xlsites
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
3.39 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.bed.gz
1.35 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_skipped.bam
3.32 kB
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_reads_single.bed.gz
1.50 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.bedgraph
5.35 MB
iCount xlsites
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
4.58 kB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
19.48 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
9.88 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
45.20 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
10.99 MB
iCount xlsites
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.bed.gz
4.81 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_skipped.bam
3.90 kB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_reads_single.bed.gz
5.51 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
11.43 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.bedgraph
20.77 MB
iCount xlsites
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
1.25 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
750.97 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
2.68 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
719.84 kB
iCount RNA-maps
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
495.04 kB
iCount xlsites
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single.bed.gz
982.77 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_skipped.bam
2.90 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_reads_single.bed.gz
1015.63 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
1.48 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single.bedgraph
3.71 MB
iCount xlsites
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_skipped.bam
2.90 kB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.bed.gz
1.55 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.bedgraph
6.09 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
2.53 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_reads_single.bed.gz
1.62 MB
Upload iCount sample annotation
122701_annotation_sheet-1.tab.gz
730 B
122701_annotation_sheet-1.xlsx
220.68 kB
Upload iCount sample annotation
122702_annotation_sheet-2.xlsx
220.60 kB
122702_annotation_sheet-2.tab.gz
721 B
FASTQ file (single-end)
CEAB6ANXX_3_20200630B_20200701_122701_fastqc.zip
505.98 kB
CEAB6ANXX_3_20200630B_20200701_122701.fastq.gz
3.03 GB
FASTQ file (single-end)
CEAB6ANXX_4_20200630B_20200701_122702.fastq.gz
2.48 GB
CEAB6ANXX_4_20200630B_20200701_122702_fastqc.zip
430.86 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
713 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
668 B
FASTQ file (CLIP)
demux_nomatch_fastqc.zip
452.03 kB
demux_nomatch.fastq.gz
208.38 MB
Upload iCount sample annotation
R10666_annotation_sheet.xlsx
223.02 kB
R10666_annotation_sheet.tab.gz
754 B
Upload iCount sample annotation
R10666_annotation_sheet.xlsx
223.35 kB
R10666_annotation_sheet.tab.gz
755 B
FASTQ file (single-end)
CD5C9ANXX_3_20201130B_20201201.fastq.gz
4.25 GB
CD5C9ANXX_3_20201130B_20201201_fastqc.zip
432.08 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
721 B
FASTQ file (CLIP)
demux_nomatch.fastq.gz
263.57 MB
demux_nomatch_fastqc.zip
429.14 kB
demux_nomatch.fastq.gz
FASTQ file (single-end)
demux_nomatch.fastq.gz
627.84 MB
demux_nomatch_fastqc.zip
391.61 kB
CDK11b_HCT116:Flp_nFLAG_4SU_365_20181026_Blazek
iCount xlsites
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
3.82 kB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
13.42 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
14.99 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
22.29 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
61.75 MB
iCount summary
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
447 B
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.18 MB
Paraclu
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
128.10 kB
FASTQ file (single-end)
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek.fastq.gz
417.16 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_fastqc.zip
383.03 kB
iCount RNA-maps
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
2.69 MB
PEKA
4mer analysis of cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
496.22 kB
Cutadapt (single-end)
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
423.46 MB
STAR
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
102.82 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed.bam
798.60 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed.bam.bai
3.78 MB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.81 kB
cdk11b-hct116-flp-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
2.73 MB
CCNT1_293Flp_cFLAG_4SU_365_1_20181026_Blazek
iCount xlsites
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
19.73 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_reads_single.bed.gz
8.49 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_skipped.bam
3.58 kB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.bed.gz
7.48 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.bedgraph
32.41 MB
iCount RNA-maps
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.tar.gz
1.43 MB
iCount summary
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1021 B
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.17 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_type.tsv
434 B
Paraclu
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
18.28 kB
FASTQ file (single-end)
ccnt1-293flp-cflag-4su-365-1-20181026-blazek.fastq.gz
391.85 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_fastqc.zip
397.14 kB
PEKA
4mer analysis of ccnt1-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome.tar.gz
442.90 kB
Cutadapt (single-end)
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed.fastq.gz
392.43 MB
STAR
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
94.87 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed_SJ.out.tab
1.21 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed.bam
712.14 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed.bam.bai
3.70 MB
ccnt1-293flp-cflag-4su-365-1-20181026-blazek_trimmed_stats.txt
1.81 kB
CCNT2_293Flp_cFLAG_4SU_365_1_20181026_Blazek
iCount RNA-maps
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.tar.gz
1.16 MB
FASTQ file (single-end)
ccnt2-293flp-cflag-4su-365-1-20181026-blazek.fastq.gz
353.16 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_fastqc.zip
430.72 kB
iCount summary
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_type.tsv
440 B
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.86 MB
Paraclu
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
14.54 kB
PEKA
4mer analysis of ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome.tar.gz
427.87 kB
Cutadapt (single-end)
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed.fastq.gz
279.63 MB
STAR
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed_stats.txt
1.81 kB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
63.84 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed.bam
474.55 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed.bam.bai
4.11 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_trimmed_SJ.out.tab
839.60 kB
iCount xlsites
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.bed.gz
4.81 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_skipped.bam
3.90 kB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_reads_single.bed.gz
5.51 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
11.43 MB
ccnt2-293flp-cflag-4su-365-1-20181026-blazek_mapped_to_genome_single.bedgraph
20.77 MB
CCNT2_293Flp_cFLAG_noUV_20181026_Blazek
iCount RNA-maps
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.tar.gz
479.90 kB
FASTQ file (single-end)
ccnt2-293flp-cflag-nouv-20181026-blazek.fastq.gz
90.34 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_fastqc.zip
496.36 kB
Cutadapt (single-end)
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed.fastq.gz
30.98 MB
iCount summary
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_type.tsv
431 B
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.31 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
997 B
Paraclu
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
2.46 kB
PEKA
4mer analysis of ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome.tar.gz
218.56 kB
STAR
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed.bam
60.77 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed.bam.bai
4.49 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed_stats.txt
1.80 kB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed_SJ.out.tab
42.63 kB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
9.98 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_trimmed.bw
53.34 kB
iCount xlsites
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_skipped.bam
2.90 kB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.bed.gz
1.55 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.bedgraph
6.09 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
2.53 MB
ccnt2-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_reads_single.bed.gz
1.62 MB
CDK13_293Flp_nFLAG_4SU_365_20181026_Blazek
iCount xlsites
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
23.52 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
109.06 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
5.22 kB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
25.92 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
41.72 MB
Paraclu
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
306.70 kB
iCount summary
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
448 B
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.59 MB
FASTQ file (single-end)
cdk13-293flp-nflag-4su-365-20181026-blazek.fastq.gz
648.61 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_fastqc.zip
399.47 kB
iCount RNA-maps
cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
3.25 MB
PEKA
4mer analysis of cdk13-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
524.53 kB
Cutadapt (single-end)
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
646.00 MB
STAR
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
132.07 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed.bam
1.26 GB
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.82 kB
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
3.15 MB
cdk13-293flp-nflag-4su-365-20181026-blazek_trimmed.bam.bai
3.58 MB
CDK11b_293Flp_ctrl_nFLAG_4SU_365_20181026_Blazek
PEKA
4mer analysis of cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
137.98 kB
FASTQ file (single-end)
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_fastqc.zip
464.65 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek.fastq.gz
27.97 MB
iCount summary
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
422 B
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.10 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
990 B
Paraclu
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
576 B
Cutadapt (single-end)
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
9.26 MB
STAR
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed.bam.bai
3.59 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed.bam
16.73 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
2.36 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.80 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
29.14 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_trimmed.bw
44.31 kB
iCount xlsites
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
1.25 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
750.97 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
2.68 MB
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
719.84 kB
iCount RNA-maps
cdk11b-293flp-ctrl-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
495.04 kB
demux_nomatch.fastq.gz
FASTQ file (single-end)
demux_nomatch_fastqc.zip
387.47 kB
demux_nomatch.fastq.gz
1.08 GB
CD5C9ANXX_3_20201130B_20201201.fastq.gz
FASTQ file (single-end)
CD5C9ANXX_3_20201130B_20201201.fastq.gz
4.25 GB
CD5C9ANXX_3_20201130B_20201201_fastqc.zip
432.08 kB
demux_nomatch.fastq.gz
FASTQ file (CLIP)
demux_nomatch.fastq.gz
263.57 MB
demux_nomatch_fastqc.zip
429.14 kB
CDK11b_293Flp_nFLAG_4SU_365_20150611_Bz1
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-20150611-bz1_fastqc.zip
399.24 kB
cdk11b-293flp-nflag-4su-365-20150611-bz1.fastq.gz
259.13 MB
Paraclu
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
78.29 kB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single.tar.gz
2.23 MB
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome.tar.gz
446.37 kB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed.fastq.gz
264.71 MB
STAR
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
52.62 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed.bam
541.71 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed_stats.txt
1.81 kB
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed.bam.bai
3.82 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_trimmed_SJ.out.tab
1.67 MB
iCount xlsites
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_skipped.bam
3.79 kB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
14.61 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single.bed.gz
8.59 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single.bedgraph
39.67 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_reads_single.bed.gz
9.34 MB
iCount summary
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_type.tsv
444 B
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
1.95 MB
cdk11b-293flp-nflag-4su-365-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
CDK11b_293Flp_1del226_nFLAG_254_20150611_Bz1
FASTQ file (single-end)
cdk11b-293flp-1del226-nflag-254-20150611-bz1_fastqc.zip
448.45 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1.fastq.gz
18.81 MB
iCount summary
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single_summary_gene.tsv
1003.05 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single_summary_type.tsv
428 B
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single_summary_subtype.tsv
987 B
iCount RNA-maps
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single.tar.gz
565.79 kB
PEKA
4mer analysis of cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome.tar.gz
274.47 kB
Cutadapt (single-end)
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed.fastq.gz
18.92 MB
STAR
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed.bam.bai
2.47 MB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed_stats.txt
1.80 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed_unmapped.out.mate1.fastq.gz
3.18 MB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed_SJ.out.tab
116.07 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed.bw
24.41 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_trimmed.bam
53.72 MB
iCount xlsites
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_skipped.bam
3.07 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_singleAndMulti.bed.gz
1.04 MB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single.bedgraph
1.75 MB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_reads_single.bed.gz
475.43 kB
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single.bed.gz
441.57 kB
Paraclu
cdk11b-293flp-1del226-nflag-254-20150611-bz1_mapped_to_genome_single_peaks.bed.gz
4.75 kB
CDK11b_293Flp_nFLAG_4SU_365_20160908_Blazek
FASTQ file (single-end)
cdk11b-293flp-nflag-4su-365-20160908-blazek.fastq.gz
176.31 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_fastqc.zip
385.10 kB
PEKA
4mer analysis of cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome.tar.gz
411.28 kB
Paraclu
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
31.91 kB
Cutadapt (single-end)
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed.fastq.gz
178.55 MB
STAR
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed.bam.bai
3.80 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
37.41 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed_stats.txt
1.81 kB
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed.bam
296.38 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_trimmed_SJ.out.tab
1.37 MB
iCount xlsites
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_skipped.bam
3.45 kB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
10.01 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bedgraph
26.35 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bed.gz
5.76 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_reads_single.bed.gz
6.46 MB
iCount RNA-maps
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single.tar.gz
1.85 MB
iCount summary
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_type.tsv
444 B
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
1.78 MB
cdk11b-293flp-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
1019 B
CDK11b_293Flp_1del226_nFLAG_4SU_365_20160908_Blazek
FASTQ file (single-end)
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek.fastq.gz
18.20 MB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_fastqc.zip
424.82 kB
iCount RNA-maps
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single.tar.gz
543.22 kB
Paraclu
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
2.61 kB
PEKA
4mer analysis of cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome.tar.gz
270.28 kB
Cutadapt (single-end)
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed.fastq.gz
18.29 MB
STAR
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
5.60 MB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed_stats.txt
1.80 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed.bam
34.09 MB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed_SJ.out.tab
80.21 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed.bam.bai
2.59 MB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_trimmed.bw
25.13 kB
iCount xlsites
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bed.gz
426.34 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_reads_single.bed.gz
477.19 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
971.82 kB
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single.bedgraph
1.67 MB
iCount summary
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
986 B
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_type.tsv
422 B
cdk11b-293flp-1del226-nflag-4su-365-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
969.39 kB
CDK12_293Flp_nFLAG_4SU_365_20181026_Blazek
FASTQ file (single-end)
cdk12-293flp-nflag-4su-365-20181026-blazek.fastq.gz
348.58 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_fastqc.zip
403.48 kB
iCount summary
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_type.tsv
445 B
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.11 MB
iCount RNA-maps
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.tar.gz
2.29 MB
Paraclu
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
83.01 kB
PEKA
4mer analysis of cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome.tar.gz
464.79 kB
Cutadapt (single-end)
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed.fastq.gz
354.49 MB
STAR
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
48.60 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed.bam.bai
4.40 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed_stats.txt
1.81 kB
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed.bam
1.14 GB
cdk12-293flp-nflag-4su-365-20181026-blazek_trimmed_SJ.out.tab
2.05 MB
iCount xlsites
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_skipped.bam
4.58 kB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
19.48 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bed.gz
9.88 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_single.bedgraph
45.20 MB
cdk12-293flp-nflag-4su-365-20181026-blazek_mapped_to_genome_reads_single.bed.gz
10.99 MB
CDK11b_293Flp_nFLAG_254_20160908_Blazek
FASTQ file (single-end)
cdk11b-293flp-nflag-254-20160908-blazek.fastq.gz
206.99 MB
cdk11b-293flp-nflag-254-20160908-blazek_fastqc.zip
425.79 kB
iCount RNA-maps
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single.tar.gz
1.47 MB
PEKA
4mer analysis of cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome.tar.gz
371.59 kB
Paraclu
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
18.20 kB
Cutadapt (single-end)
cdk11b-293flp-nflag-254-20160908-blazek_trimmed.fastq.gz
174.02 MB
STAR
cdk11b-293flp-nflag-254-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
24.20 MB
cdk11b-293flp-nflag-254-20160908-blazek_trimmed.bam.bai
4.07 MB
cdk11b-293flp-nflag-254-20160908-blazek_trimmed_SJ.out.tab
1006.72 kB
cdk11b-293flp-nflag-254-20160908-blazek_trimmed.bam
623.37 MB
cdk11b-293flp-nflag-254-20160908-blazek_trimmed_stats.txt
1.81 kB
iCount xlsites
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
7.03 MB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_skipped.bam
3.26 kB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single.bed.gz
3.56 MB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single.bedgraph
16.03 MB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_reads_single.bed.gz
4.02 MB
iCount summary
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single_summary_type.tsv
438 B
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
1.56 MB
cdk11b-293flp-nflag-254-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
1016 B
CDK11b_293Flp_1del226_nFLAG_254_20160908_Blazek
FASTQ file (single-end)
cdk11b-293flp-1del226-nflag-254-20160908-blazek.fastq.gz
34.10 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_fastqc.zip
428.18 kB
iCount summary
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single_summary_type.tsv
433 B
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single_summary_subtype.tsv
994 B
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single_summary_gene.tsv
1022.09 kB
iCount RNA-maps
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single.tar.gz
593.97 kB
PEKA
4mer analysis of cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome.tar.gz
278.61 kB
Cutadapt (single-end)
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed.fastq.gz
32.86 MB
STAR
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed.bam.bai
2.88 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed_unmapped.out.mate1.fastq.gz
5.73 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed.bam
118.69 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed_SJ.out.tab
140.26 kB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_trimmed_stats.txt
1.80 kB
iCount xlsites
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_skipped.bam
2.90 kB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_singleAndMulti.bed.gz
1.40 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_reads_single.bed.gz
581.63 kB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single.bedgraph
2.05 MB
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single.bed.gz
517.53 kB
Paraclu
cdk11b-293flp-1del226-nflag-254-20160908-blazek_mapped_to_genome_single_peaks.bed.gz
2.80 kB
CCNT1_293Flp_cFLAG_4SU_365_2_20181026_Blazek
iCount xlsites
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.bed.gz
9.00 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_reads_single.bed.gz
10.00 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.bedgraph
39.48 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_skipped.bam
4.29 kB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
24.69 MB
Paraclu
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
34.37 kB
iCount summary
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_type.tsv
444 B
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.34 MB
FASTQ file (single-end)
ccnt1-293flp-cflag-4su-365-2-20181026-blazek.fastq.gz
403.76 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_fastqc.zip
431.82 kB
iCount RNA-maps
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.tar.gz
1.70 MB
PEKA
4mer analysis of ccnt1-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome.tar.gz
433.12 kB
Cutadapt (single-end)
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed.fastq.gz
357.14 MB
STAR
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed.bam.bai
3.35 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
96.95 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed_stats.txt
1.81 kB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed.bam
798.14 MB
ccnt1-293flp-cflag-4su-365-2-20181026-blazek_trimmed_SJ.out.tab
1.69 MB
CCNT1_293Flp_cFLAG_noUV_20181026_Blazek
PEKA
4mer analysis of ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome.tar.gz
335.92 kB
FASTQ file (single-end)
ccnt1-293flp-cflag-nouv-20181026-blazek.fastq.gz
117.03 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_fastqc.zip
487.81 kB
iCount summary
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1007 B
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_type.tsv
432 B
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.44 MB
iCount RNA-maps
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.tar.gz
613.82 kB
Paraclu
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
3.92 kB
Cutadapt (single-end)
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed.fastq.gz
75.43 MB
STAR
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
21.93 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed.bam.bai
4.27 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed_stats.txt
1.81 kB
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed.bam
152.22 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_trimmed_SJ.out.tab
204.59 kB
iCount xlsites
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
3.39 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.bed.gz
1.35 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_skipped.bam
3.32 kB
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_reads_single.bed.gz
1.50 MB
ccnt1-293flp-cflag-nouv-20181026-blazek_mapped_to_genome_single.bedgraph
5.35 MB
CCNT2_293Flp_cFLAG_4SU_365_2_20181026_Blazek
iCount summary
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_type.tsv
441 B
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
2.02 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
PEKA
4mer analysis of ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome.tar.gz
443.07 kB
FASTQ file (single-end)
ccnt2-293flp-cflag-4su-365-2-20181026-blazek.fastq.gz
345.05 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_fastqc.zip
395.59 kB
iCount RNA-maps
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.tar.gz
1.43 MB
Paraclu
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
20.07 kB
Cutadapt (single-end)
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed.fastq.gz
347.34 MB
STAR
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed.bam.bai
3.98 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed_stats.txt
1.81 kB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed_SJ.out.tab
1006.73 kB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
59.27 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_trimmed.bam
591.48 MB
iCount xlsites
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_skipped.bam
4.08 kB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.bed.gz
7.41 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
13.83 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_reads_single.bed.gz
8.44 MB
ccnt2-293flp-cflag-4su-365-2-20181026-blazek_mapped_to_genome_single.bedgraph
32.40 MB
CCNT1_293Flp_FLAG_4SU_365_noAb_20181026_Blazek
Paraclu
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single_peaks.bed.gz
1.38 kB
iCount summary
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single_summary_type.tsv
425 B
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single_summary_gene.tsv
1.15 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single_summary_subtype.tsv
991 B
FASTQ file (single-end)
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_fastqc.zip
490.07 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek.fastq.gz
89.65 MB
iCount RNA-maps
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single.tar.gz
494.28 kB
PEKA
4mer analysis of ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome.tar.gz
134.62 kB
Cutadapt (single-end)
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed.fastq.gz
18.50 MB
STAR
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed.bam
25.50 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed_SJ.out.tab
21.32 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed_unmapped.out.mate1.fastq.gz
12.12 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed.bam.bai
4.03 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed.bw
45.58 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_trimmed_stats.txt
1.80 kB
iCount xlsites
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single.bed.gz
982.77 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_skipped.bam
2.90 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_reads_single.bed.gz
1015.63 kB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_singleAndMulti.bed.gz
1.48 MB
ccnt1-293flp-flag-4su-365-noab-20181026-blazek_mapped_to_genome_single.bedgraph
3.71 MB