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Folder iconMethylation of Vault noncoding RNA

Rahul Arora
June 14, 2019
Autosomal-recessive loss of the NSUN2 gene has been identified as a causative link to intellectual disability disorders in humans. NSun2 is an RNA methyltransferase modifying cytosine-5 in transfer RNAs (tRNAs), yet the identification of cytosine methylation in other RNA species has been hampered by the lack of sensitive and reliable molecular techniques. Here, we describe miCLIP as an additional approach for identifying RNA methylation sites in transcriptomes. miCLIP is a customized version of the individual-nucleotide-resolution crosslinking and immunoprecipitation (iCLIP) method. We confirm site-specific methylation in tRNAs and additional messenger and noncoding RNAs (ncRNAs). Among these, vault ncRNAs contained six NSun2-methylated cytosines, three of which were confirmed by RNA bisulfite sequencing. Using patient cells lacking the NSun2 protein, we further show that loss of cytosine-5 methylation in vault RNAs causes aberrant processing into Argonaute-associated small RNA fragments that can function as microRNAs. Thus, impaired processing of vault ncRNA may contribute to the etiology of NSun2-deficiency human disorders.

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nsun2-hek293t-untreated-20120806-lue56-2_trimmed_unmapped.out.mate1.fastq.gz
20.21 MB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed.bam.bai
2.43 MB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed.bam
457.36 MB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_stats.txt
1.81 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_SJ.out.tab
90.60 kB
STAR
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_unmapped.out.mate1.fastq.gz
12.80 MB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed.bam.bai
1.90 MB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed.bam
406.52 MB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_SJ.out.tab
33.17 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_stats.txt
1.81 kB
STAR
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_SJ.out.tab
131.52 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed.bam.bai
2.93 MB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_stats.txt
1.81 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_unmapped.out.mate1.fastq.gz
103.13 MB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed.bam
1.01 GB
STAR
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_unmapped.out.mate1.fastq.gz
16.96 MB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed.bam
377.96 MB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed.bam.bai
2.27 MB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_SJ.out.tab
102.86 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_stats.txt
1.81 kB
STAR
nsun2-hek293t-untreated-20120628-lue49-2_trimmed.bam.bai
1.45 MB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed.bam
16.60 MB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_stats.txt
1.79 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed.bw
16.29 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_SJ.out.tab
1.56 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_unmapped.out.mate1.fastq.gz
1.24 MB
STAR
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_unmapped.out.mate1.fastq.gz
2.98 MB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed.bam.bai
1.57 MB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed.bam
83.14 MB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_SJ.out.tab
6.33 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_stats.txt
1.80 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed.bw
16.86 kB
STAR
nsun2-hek293t-untreated-20120628-lue49_trimmed_unmapped.out.mate1.fastq.gz
7.11 MB
nsun2-hek293t-untreated-20120628-lue49_trimmed.bam
121.29 MB
nsun2-hek293t-untreated-20120628-lue49_trimmed.bam.bai
1.57 MB
nsun2-hek293t-untreated-20120628-lue49_trimmed_stats.txt
1.80 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_SJ.out.tab
5.84 kB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single.bed.gz
19.90 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_skipped.bam
2.90 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_singleAndMulti.bed.gz
82.54 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_reads_single.bed.gz
21.70 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single.bedgraph
72.62 kB
iCount xlsites
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single.bed.gz
586 B
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_reads_single.bed.gz
628 B
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_singleAndMulti.bed.gz
2.37 kB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single.bedgraph
1.64 kB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_skipped.bam
2.90 kB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue49_trimmed_single.bed.gz
21.93 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_skipped.bam
3.19 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_singleAndMulti.bed.gz
92.85 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_reads_single.bed.gz
23.93 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_single.bedgraph
77.98 kB
iCount xlsites
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single.bed.gz
26.69 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_skipped.bam
2.90 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_reads_single.bed.gz
28.89 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single.bedgraph
92.74 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_singleAndMulti.bed.gz
110.15 kB
iCount xlsites
nsun2-hek293t-untreated-20111026-lue42_trimmed_single.bed.gz
100.12 kB
nsun2-hek293t-untreated-20111026-lue42_trimmed_skipped.bam
3.05 kB
nsun2-hek293t-untreated-20111026-lue42_trimmed_reads_single.bed.gz
105.97 kB
nsun2-hek293t-untreated-20111026-lue42_trimmed_singleAndMulti.bed.gz
422.37 kB
nsun2-hek293t-untreated-20111026-lue42_trimmed_single.bedgraph
351.66 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_skipped.bam
3.55 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_singleAndMulti.bed.gz
187.06 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_reads_single.bed.gz
52.86 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_single.bedgraph
186.80 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_single.bed.gz
47.25 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue55_trimmed_skipped.bam
5.27 kB
nsun2-hek293t-untreated-20120806-lue55_trimmed_reads_single.bed.gz
55.64 kB
nsun2-hek293t-untreated-20120806-lue55_trimmed_single.bed.gz
50.28 kB
nsun2-hek293t-untreated-20120806-lue55_trimmed_singleAndMulti.bed.gz
203.14 kB
nsun2-hek293t-untreated-20120806-lue55_trimmed_single.bedgraph
194.98 kB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue50_trimmed_reads_single.bed.gz
33.03 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_singleAndMulti.bed.gz
147.50 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_skipped.bam
2.90 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_single.bed.gz
31.53 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_single.bedgraph
125.77 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_skipped.bam
9.28 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single.bed.gz
94.26 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single.bedgraph
365.78 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_reads_single.bed.gz
102.08 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_singleAndMulti.bed.gz
369.61 kB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_single.bed.gz
438.09 kB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_skipped.bam
7.16 kB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_reads_single.bed.gz
454.21 kB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_single.bedgraph
1.70 MB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_singleAndMulti.bed.gz
1.61 MB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_single.bed.gz
316.24 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_skipped.bam
5.91 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_reads_single.bed.gz
330.79 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_singleAndMulti.bed.gz
1.39 MB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_single.bedgraph
1.19 MB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single.bedgraph
963.04 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single.bed.gz
243.69 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_singleAndMulti.bed.gz
928.12 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_reads_single.bed.gz
252.95 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_skipped.bam
15.51 kB
FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120628-lue49-2_fastqc.zip
500.12 kB
stderr.txt
1.44 kB
nsun2-hek293t-untreated-20120628-lue49-2.fastq.gz
5.33 MB
FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120628-lue49-1.fastq.gz
41.29 MB
stderr.txt
1.44 kB
nsun2-hek293t-untreated-20120628-lue49-1_fastqc.zip
461.62 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
111.53 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
679.93 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_skipped.bam
8.70 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single.bed.gz
99.64 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_reads_single.bed.gz
108.27 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_singleAndMulti.bed.gz
375.49 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single.bedgraph
395.28 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_skipped.bam
12.67 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_singleAndMulti.bed.gz
817.81 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_reads_single.bed.gz
248.02 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_single.bedgraph
915.54 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_single.bed.gz
230.62 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue56_trimmed_singleAndMulti.bed.gz
1.12 MB
nsun2-hek293t-untreated-20120806-lue56_trimmed_skipped.bam
21.97 kB
nsun2-hek293t-untreated-20120806-lue56_trimmed_reads_single.bed.gz
328.17 kB
nsun2-hek293t-untreated-20120806-lue56_trimmed_single.bedgraph
1.23 MB
nsun2-hek293t-untreated-20120806-lue56_trimmed_single.bed.gz
314.14 kB
iCount summary
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single_summary_subtype.tsv
512 B
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single_summary_type.tsv
410 B
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single_summary_gene.tsv
10.88 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120806-lue56_trimmed_single.tar.gz
423.36 kB
iCount summary
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single_summary_type.tsv
426 B
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single_summary_gene.tsv
62.12 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single_summary_subtype.tsv
725 B
iCount summary
nsun2-hek293t-untreated-20120806-lue55_trimmed_single_summary_subtype.tsv
989 B
nsun2-hek293t-untreated-20120806-lue55_trimmed_single_summary_type.tsv
426 B
nsun2-hek293t-untreated-20120806-lue55_trimmed_single_summary_gene.tsv
98.31 kB
iCount summary
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single_summary_type.tsv
223 B
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single_summary_gene.tsv
1.16 kB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single_summary_subtype.tsv
303 B
iCount summary
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single_summary_subtype.tsv
1003 B
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single_summary_type.tsv
431 B
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single_summary_gene.tsv
223.04 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single.tar.gz
207.17 kB
iCount summary
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single_summary_subtype.tsv
1016 B
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single_summary_gene.tsv
600.85 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single_summary_type.tsv
435 B
iCount xlsites
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single.bed.gz
3.78 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_skipped.bam
2.90 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_reads_single.bed.gz
4.10 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_singleAndMulti.bed.gz
18.72 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single.bedgraph
11.81 kB
Paraclu
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single_peaks.bed.gz
135 B
K-mers
nsun2-hek293t-untreated-20120628-lue49-2.tar.gz
141 B
iCount RNA-maps
nsun2-hek293t-untreated-20120628-lue49_trimmed_single.tar.gz
268.59 kB
iCount summary
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single_summary_type.tsv
421 B
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single_summary_subtype.tsv
785 B
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single_summary_gene.tsv
33.34 kB
Paraclu
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single_peaks.bed.gz
2.17 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single.tar.gz
253.21 kB
K-mers
nsun2-hek293t-untreated-20120628-lue49-1.tar.gz
141 B
iCount summary
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single_summary_subtype.tsv
1012 B
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single_summary_gene.tsv
228.72 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single_summary_type.tsv
436 B
iCount summary
nsun2-hek293t-untreated-20120628-lue49_trimmed_single_summary_type.tsv
422 B
nsun2-hek293t-untreated-20120628-lue49_trimmed_single_summary_gene.tsv
45.75 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_single_summary_subtype.tsv
651 B
Paraclu
nsun2-hek293t-untreated-20120628-lue49_trimmed_single_peaks.bed.gz
1.82 kB
K-mers
nsun2-hek293t-untreated-20120806-lue56.tar.gz
296.86 kB
iCount summary
nsun2-hek293t-untreated-20120806-lue56_trimmed_single_summary_subtype.tsv
1015 B
nsun2-hek293t-untreated-20120806-lue56_trimmed_single_summary_gene.tsv
724.23 kB
nsun2-hek293t-untreated-20120806-lue56_trimmed_single_summary_type.tsv
436 B

20111026_LUe42_SLX-4426.CRIRUN_724.s_2.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20111026_LUe42_SLX-4426.CRIRUN_724.s_2.sequence_fastqc.zip
613.78 kB
20111026_LUe42_SLX-4426.CRIRUN_724.s_2.sequence.fastq.gz
925.18 MB

20120628_LUe49_SLX-4939.CRIRUN_863.s_2.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20120628_LUe49_SLX-4939.CRIRUN_863.s_2.sequence_fastqc.zip
575.89 kB
20120628_LUe49_SLX-4939.CRIRUN_863.s_2.sequence.fastq.gz
290.72 MB

20120628_LUe50_SLX-4940.CRIRUN_863.s_3.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
20120628_LUe50_SLX-4940.CRIRUN_863.s_3.sequence_fastqc.zip
568.98 kB
stderr.txt
1.58 kB
20120628_LUe50_SLX-4940.CRIRUN_863.s_3.sequence.fastq.gz
1.22 GB

20120806_LUe55_SLX-5354.CRIRUN_881.s_2.sequence.fastq.gz

FASTQ file (single-end)
20120806_LUe55_SLX-5354.CRIRUN_881.s_2.sequence.fastq.gz
600.63 MB
fastqc
Directory
stderr.txt
1.58 kB
20120806_LUe55_SLX-5354.CRIRUN_881.s_2.sequence_fastqc.zip
571.92 kB

20120806_LUe56_SLX-5355.CRIRUN_881.s_3.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20120806_LUe56_SLX-5355.CRIRUN_881.s_3.sequence.fastq.gz
1.03 GB
20120806_LUe56_SLX-5355.CRIRUN_881.s_3.sequence_fastqc.zip
557.43 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
79.11 MB
demux_nomatch_fastqc.zip
557.47 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
234.43 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
611.48 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
166.59 MB
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
626.76 kB

NSUN2_HEK293T_Untreated_20111026_LUe42_2

K-mers
nsun2-hek293t-untreated-20111026-lue42-2.tar.gz
140 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.51 kB
nsun2-hek293t-untreated-20111026-lue42-2.fastq.gz
422.41 kB
nsun2-hek293t-untreated-20111026-lue42-2_fastqc.zip
687.04 kB
iCount RNA-maps
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single.tar.gz
960 B
Paraclu
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single_peaks.bed.gz
91 B
Cutadapt (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20111026-lue42-2_trimmed.fastq.gz
389.63 kB
report.txt
676 B
STAR
nsun2-hek293t-untreated-20111026-lue42-2_trimmed.bam.bai
1.33 MB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_unmapped.out.mate1.fastq.gz
267.85 kB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_stats.txt
1.78 kB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed.bam
950.57 kB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_SJ.out.tab
72 B
nsun2-hek293t-untreated-20111026-lue42-2_trimmed.bw
15.54 kB
iCount xlsites
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single.bed.gz
586 B
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_reads_single.bed.gz
628 B
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_singleAndMulti.bed.gz
2.37 kB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single.bedgraph
1.64 kB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_skipped.bam
2.90 kB
iCount summary
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single_summary_type.tsv
223 B
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single_summary_gene.tsv
1.16 kB
nsun2-hek293t-untreated-20111026-lue42-2_trimmed_single_summary_subtype.tsv
303 B

NSUN2_HEK293T_Untreated_20120806_LUe55

FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120806-lue55.fastq.gz
63.59 MB
nsun2-hek293t-untreated-20120806-lue55_fastqc.zip
465.05 kB
stderr.txt
1.40 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120806-lue55_trimmed_single.tar.gz
288.25 kB
K-mers
nsun2-hek293t-untreated-20120806-lue55.tar.gz
128.56 kB
Paraclu
nsun2-hek293t-untreated-20120806-lue55_trimmed_single_peaks.bed.gz
3.61 kB
Cutadapt (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120806-lue55_trimmed.fastq.gz
66.17 MB
report.txt
673 B
STAR
nsun2-hek293t-untreated-20120806-lue55_trimmed_unmapped.out.mate1.fastq.gz
7.78 MB
nsun2-hek293t-untreated-20120806-lue55_trimmed.bam.bai
1.71 MB
nsun2-hek293t-untreated-20120806-lue55_trimmed_stats.txt
1.80 kB
nsun2-hek293t-untreated-20120806-lue55_trimmed.bam
193.70 MB
nsun2-hek293t-untreated-20120806-lue55_trimmed_SJ.out.tab
13.41 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue55_trimmed_skipped.bam
5.27 kB
nsun2-hek293t-untreated-20120806-lue55_trimmed_reads_single.bed.gz
55.64 kB
nsun2-hek293t-untreated-20120806-lue55_trimmed_single.bed.gz
50.28 kB
nsun2-hek293t-untreated-20120806-lue55_trimmed_singleAndMulti.bed.gz
203.14 kB
nsun2-hek293t-untreated-20120806-lue55_trimmed_single.bedgraph
194.98 kB
iCount summary
nsun2-hek293t-untreated-20120806-lue55_trimmed_single_summary_subtype.tsv
989 B
nsun2-hek293t-untreated-20120806-lue55_trimmed_single_summary_type.tsv
426 B
nsun2-hek293t-untreated-20120806-lue55_trimmed_single_summary_gene.tsv
98.31 kB

NSUN2_HEK293T_Untreated_20120628_LUe50

FASTQ file (single-end)
stderr.txt
1.40 kB
fastqc
Directory
nsun2-hek293t-untreated-20120628-lue50.fastq.gz
6.19 MB
nsun2-hek293t-untreated-20120628-lue50_fastqc.zip
472.31 kB
iCount summary
nsun2-hek293t-untreated-20120628-lue50_trimmed_single_summary_gene.tsv
53.15 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_single_summary_type.tsv
418 B
nsun2-hek293t-untreated-20120628-lue50_trimmed_single_summary_subtype.tsv
841 B
iCount RNA-maps
nsun2-hek293t-untreated-20120628-lue50_trimmed_single.tar.gz
284.97 kB
K-mers
nsun2-hek293t-untreated-20120628-lue50.tar.gz
117.70 kB
Paraclu
nsun2-hek293t-untreated-20120628-lue50_trimmed_single_peaks.bed.gz
2.97 kB
Cutadapt (single-end)
report.txt
673 B
fastqc
Directory
nsun2-hek293t-untreated-20120628-lue50_trimmed.fastq.gz
6.31 MB
STAR
nsun2-hek293t-untreated-20120628-lue50_trimmed_unmapped.out.mate1.fastq.gz
1.63 MB
nsun2-hek293t-untreated-20120628-lue50_trimmed.bam
16.08 MB
nsun2-hek293t-untreated-20120628-lue50_trimmed_stats.txt
1.79 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed.bw
19.15 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_SJ.out.tab
7.63 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed.bam.bai
1.61 MB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue50_trimmed_reads_single.bed.gz
33.03 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_singleAndMulti.bed.gz
147.50 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_skipped.bam
2.90 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_single.bed.gz
31.53 kB
nsun2-hek293t-untreated-20120628-lue50_trimmed_single.bedgraph
125.77 kB

NSUN2_HEK293T_Untreated_20120628_LUe50_2

FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120628-lue50-2.fastq.gz
389.54 MB
stderr.txt
1.44 kB
nsun2-hek293t-untreated-20120628-lue50-2_fastqc.zip
456.36 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_single.tar.gz
386.43 kB
iCount summary
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_single_summary_gene.tsv
680.52 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_single_summary_type.tsv
435 B
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_single_summary_subtype.tsv
1016 B
K-mers
nsun2-hek293t-untreated-20120628-lue50-2.tar.gz
288.84 kB
Paraclu
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_single_peaks.bed.gz
15.40 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
nsun2-hek293t-untreated-20120628-lue50-2_trimmed.fastq.gz
402.78 MB
STAR
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_SJ.out.tab
131.52 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed.bam.bai
2.93 MB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_stats.txt
1.81 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_unmapped.out.mate1.fastq.gz
103.13 MB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed.bam
1.01 GB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_single.bed.gz
316.24 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_skipped.bam
5.91 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_reads_single.bed.gz
330.79 kB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_singleAndMulti.bed.gz
1.39 MB
nsun2-hek293t-untreated-20120628-lue50-2_trimmed_single.bedgraph
1.19 MB

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
35.34 MB
demux_nomatch_fastqc.zip
454.21 kB
fastqc
Directory
stderr.txt
935 B

NSUN2_HEK293T_Untreated_20120806_LUe56

Paraclu
nsun2-hek293t-untreated-20120806-lue56_trimmed_single_peaks.bed.gz
8.72 kB
FASTQ file (single-end)
nsun2-hek293t-untreated-20120806-lue56.fastq.gz
197.15 MB
fastqc
Directory
nsun2-hek293t-untreated-20120806-lue56_fastqc.zip
447.71 kB
stderr.txt
1.40 kB
Cutadapt (single-end)
report.txt
674 B
nsun2-hek293t-untreated-20120806-lue56_trimmed.fastq.gz
205.36 MB
fastqc
Directory
STAR
nsun2-hek293t-untreated-20120806-lue56_trimmed_stats.txt
1.81 kB
nsun2-hek293t-untreated-20120806-lue56_trimmed.bam
497.50 MB
nsun2-hek293t-untreated-20120806-lue56_trimmed_unmapped.out.mate1.fastq.gz
23.58 MB
nsun2-hek293t-untreated-20120806-lue56_trimmed_SJ.out.tab
146.93 kB
nsun2-hek293t-untreated-20120806-lue56_trimmed.bam.bai
2.59 MB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue56_trimmed_singleAndMulti.bed.gz
1.12 MB
nsun2-hek293t-untreated-20120806-lue56_trimmed_skipped.bam
21.97 kB
nsun2-hek293t-untreated-20120806-lue56_trimmed_reads_single.bed.gz
328.17 kB
nsun2-hek293t-untreated-20120806-lue56_trimmed_single.bedgraph
1.23 MB
nsun2-hek293t-untreated-20120806-lue56_trimmed_single.bed.gz
314.14 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120806-lue56_trimmed_single.tar.gz
423.36 kB
K-mers
nsun2-hek293t-untreated-20120806-lue56.tar.gz
296.86 kB
iCount summary
nsun2-hek293t-untreated-20120806-lue56_trimmed_single_summary_subtype.tsv
1015 B
nsun2-hek293t-untreated-20120806-lue56_trimmed_single_summary_gene.tsv
724.23 kB
nsun2-hek293t-untreated-20120806-lue56_trimmed_single_summary_type.tsv
436 B

NSUN2_HEK293T_Untreated_20120806_LUe55_1

FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120806-lue55-1_fastqc.zip
448.01 kB
nsun2-hek293t-untreated-20120806-lue55-1.fastq.gz
96.82 MB
stderr.txt
1.44 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single.tar.gz
315.41 kB
K-mers
nsun2-hek293t-untreated-20120806-lue55-1.tar.gz
139.50 kB
Paraclu
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single_peaks.bed.gz
4.96 kB
Cutadapt (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120806-lue55-1_trimmed.fastq.gz
100.64 MB
report.txt
675 B
STAR
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_unmapped.out.mate1.fastq.gz
11.87 MB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed.bam.bai
1.91 MB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_SJ.out.tab
28.56 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_stats.txt
1.81 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed.bam
279.37 MB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_skipped.bam
9.28 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single.bed.gz
94.26 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single.bedgraph
365.78 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_reads_single.bed.gz
102.08 kB
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_singleAndMulti.bed.gz
369.61 kB
iCount summary
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single_summary_subtype.tsv
1003 B
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single_summary_type.tsv
431 B
nsun2-hek293t-untreated-20120806-lue55-1_trimmed_single_summary_gene.tsv
223.04 kB

NSUN2_HEK293T_Untreated_20120628_LUe50_1

FASTQ file (single-end)
nsun2-hek293t-untreated-20120628-lue50-1.fastq.gz
291.48 MB
fastqc
Directory
stderr.txt
1.44 kB
nsun2-hek293t-untreated-20120628-lue50-1_fastqc.zip
440.14 kB
Cutadapt (single-end)
report.txt
676 B
fastqc
Directory
nsun2-hek293t-untreated-20120628-lue50-1_trimmed.fastq.gz
300.64 MB
K-mers
nsun2-hek293t-untreated-20120628-lue50-1.tar.gz
311.58 kB
iCount summary
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_single_summary_type.tsv
435 B
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_single_summary_gene.tsv
888.31 kB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_single_summary_subtype.tsv
1016 B
iCount RNA-maps
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_single.tar.gz
470.39 kB
Paraclu
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_single_peaks.bed.gz
13.92 kB
STAR
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_unmapped.out.mate1.fastq.gz
65.90 MB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed.bam.bai
2.97 MB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed.bam
767.41 MB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_stats.txt
1.81 kB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_SJ.out.tab
202.90 kB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_single.bed.gz
438.09 kB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_skipped.bam
7.16 kB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_reads_single.bed.gz
454.21 kB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_single.bedgraph
1.70 MB
nsun2-hek293t-untreated-20120628-lue50-1_trimmed_singleAndMulti.bed.gz
1.61 MB

NSUN2_HEK293T_Untreated_20120806_LUe56_1

iCount RNA-maps
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single.tar.gz
317.38 kB
K-mers
nsun2-hek293t-untreated-20120806-lue56-1.tar.gz
140.96 kB
FASTQ file (single-end)
nsun2-hek293t-untreated-20120806-lue56-1_fastqc.zip
454.89 kB
fastqc
Directory
stderr.txt
1.44 kB
nsun2-hek293t-untreated-20120806-lue56-1.fastq.gz
170.32 MB
Paraclu
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single_peaks.bed.gz
4.71 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
nsun2-hek293t-untreated-20120806-lue56-1_trimmed.fastq.gz
177.59 MB
STAR
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_unmapped.out.mate1.fastq.gz
12.80 MB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed.bam.bai
1.90 MB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed.bam
406.52 MB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_SJ.out.tab
33.17 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_stats.txt
1.81 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_skipped.bam
8.70 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single.bed.gz
99.64 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_reads_single.bed.gz
108.27 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_singleAndMulti.bed.gz
375.49 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single.bedgraph
395.28 kB
iCount summary
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single_summary_subtype.tsv
1012 B
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single_summary_gene.tsv
228.72 kB
nsun2-hek293t-untreated-20120806-lue56-1_trimmed_single_summary_type.tsv
436 B

NSUN2_HEK293T_Untreated_20120628_LUe49_2

Cutadapt (single-end)
nsun2-hek293t-untreated-20120628-lue49-2_trimmed.fastq.gz
5.26 MB
fastqc
Directory
report.txt
676 B
STAR
nsun2-hek293t-untreated-20120628-lue49-2_trimmed.bam.bai
1.45 MB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed.bam
16.60 MB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_stats.txt
1.79 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed.bw
16.29 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_SJ.out.tab
1.56 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_unmapped.out.mate1.fastq.gz
1.24 MB
FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120628-lue49-2_fastqc.zip
500.12 kB
stderr.txt
1.44 kB
nsun2-hek293t-untreated-20120628-lue49-2.fastq.gz
5.33 MB
iCount summary
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single_summary_subtype.tsv
512 B
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single_summary_type.tsv
410 B
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single_summary_gene.tsv
10.88 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single.tar.gz
207.17 kB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single.bed.gz
3.78 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_skipped.bam
2.90 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_reads_single.bed.gz
4.10 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_singleAndMulti.bed.gz
18.72 kB
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single.bedgraph
11.81 kB
Paraclu
nsun2-hek293t-untreated-20120628-lue49-2_trimmed_single_peaks.bed.gz
135 B
K-mers
nsun2-hek293t-untreated-20120628-lue49-2.tar.gz
141 B

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
111.53 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
679.93 kB

NSUN2_HEK293T_Untreated_20111026_LUe42

FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20111026-lue42_fastqc.zip
498.65 kB
nsun2-hek293t-untreated-20111026-lue42.fastq.gz
401.68 MB
stderr.txt
1.40 kB
iCount summary
nsun2-hek293t-untreated-20111026-lue42_trimmed_single_summary_type.tsv
429 B
nsun2-hek293t-untreated-20111026-lue42_trimmed_single_summary_subtype.tsv
798 B
nsun2-hek293t-untreated-20111026-lue42_trimmed_single_summary_gene.tsv
224.63 kB
iCount RNA-maps
nsun2-hek293t-untreated-20111026-lue42_trimmed_single.tar.gz
310.46 kB
Paraclu
nsun2-hek293t-untreated-20111026-lue42_trimmed_single_peaks.bed.gz
4.76 kB
K-mers
nsun2-hek293t-untreated-20111026-lue42.tar.gz
135.12 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
674 B
nsun2-hek293t-untreated-20111026-lue42_trimmed.fastq.gz
411.98 MB
STAR
nsun2-hek293t-untreated-20111026-lue42_trimmed.bam.bai
2.19 MB
nsun2-hek293t-untreated-20111026-lue42_trimmed.bam
987.57 MB
nsun2-hek293t-untreated-20111026-lue42_trimmed_SJ.out.tab
33.26 kB
nsun2-hek293t-untreated-20111026-lue42_trimmed_unmapped.out.mate1.fastq.gz
39.19 MB
nsun2-hek293t-untreated-20111026-lue42_trimmed_stats.txt
1.81 kB
iCount xlsites
nsun2-hek293t-untreated-20111026-lue42_trimmed_single.bed.gz
100.12 kB
nsun2-hek293t-untreated-20111026-lue42_trimmed_skipped.bam
3.05 kB
nsun2-hek293t-untreated-20111026-lue42_trimmed_reads_single.bed.gz
105.97 kB
nsun2-hek293t-untreated-20111026-lue42_trimmed_singleAndMulti.bed.gz
422.37 kB
nsun2-hek293t-untreated-20111026-lue42_trimmed_single.bedgraph
351.66 kB

NSUN2_HEK293T_Untreated_20111026_LUe42_1

K-mers
nsun2-hek293t-untreated-20111026-lue42-1.tar.gz
140 B
FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20111026-lue42-1_fastqc.zip
478.61 kB
nsun2-hek293t-untreated-20111026-lue42-1.fastq.gz
107.26 MB
stderr.txt
1.44 kB
iCount RNA-maps
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single.tar.gz
259.75 kB
Paraclu
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single_peaks.bed.gz
1.86 kB
Cutadapt (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20111026-lue42-1_trimmed.fastq.gz
110.50 MB
report.txt
675 B
STAR
nsun2-hek293t-untreated-20111026-lue42-1_trimmed.bam.bai
1.64 MB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_unmapped.out.mate1.fastq.gz
6.25 MB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed.bam
226.19 MB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_SJ.out.tab
7.52 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_stats.txt
1.80 kB
iCount xlsites
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single.bed.gz
26.69 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_skipped.bam
2.90 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_reads_single.bed.gz
28.89 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single.bedgraph
92.74 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_singleAndMulti.bed.gz
110.15 kB
iCount summary
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single_summary_type.tsv
426 B
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single_summary_gene.tsv
62.12 kB
nsun2-hek293t-untreated-20111026-lue42-1_trimmed_single_summary_subtype.tsv
725 B

NSUN2_HEK293T_Untreated_20120806_LUe55_2

Paraclu
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_single_peaks.bed.gz
3.32 kB
iCount summary
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_single_summary_type.tsv
426 B
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_single_summary_gene.tsv
89.84 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_single_summary_subtype.tsv
925 B
FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120806-lue55-2.fastq.gz
56.60 MB
nsun2-hek293t-untreated-20120806-lue55-2_fastqc.zip
469.42 kB
stderr.txt
1.44 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_single.tar.gz
293.09 kB
K-mers
nsun2-hek293t-untreated-20120806-lue55-2.tar.gz
127.76 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
675 B
nsun2-hek293t-untreated-20120806-lue55-2_trimmed.fastq.gz
58.98 MB
STAR
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_unmapped.out.mate1.fastq.gz
5.82 MB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed.bam.bai
1.66 MB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed.bam
163.79 MB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_stats.txt
1.80 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_SJ.out.tab
12.20 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_skipped.bam
3.55 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_singleAndMulti.bed.gz
187.06 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_reads_single.bed.gz
52.86 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_single.bedgraph
186.80 kB
nsun2-hek293t-untreated-20120806-lue55-2_trimmed_single.bed.gz
47.25 kB

NSUN2_HEK293T_Untreated_20120806_LUe56_2

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.44 kB
nsun2-hek293t-untreated-20120806-lue56-2.fastq.gz
169.68 MB
nsun2-hek293t-untreated-20120806-lue56-2_fastqc.zip
473.23 kB
Paraclu
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single_peaks.bed.gz
8.53 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single.tar.gz
380.07 kB
K-mers
nsun2-hek293t-untreated-20120806-lue56-2.tar.gz
222.53 kB
Cutadapt (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120806-lue56-2_trimmed.fastq.gz
176.57 MB
report.txt
676 B
STAR
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_unmapped.out.mate1.fastq.gz
20.21 MB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed.bam.bai
2.43 MB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed.bam
457.36 MB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_stats.txt
1.81 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_SJ.out.tab
90.60 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single.bedgraph
963.04 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single.bed.gz
243.69 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_singleAndMulti.bed.gz
928.12 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_reads_single.bed.gz
252.95 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_skipped.bam
15.51 kB
iCount summary
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single_summary_subtype.tsv
1016 B
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single_summary_gene.tsv
600.85 kB
nsun2-hek293t-untreated-20120806-lue56-2_trimmed_single_summary_type.tsv
435 B

NSUN2_HEK293T_Untreated_20120806_LUe56_3

K-mers
nsun2-hek293t-untreated-20120806-lue56-3.tar.gz
285.63 kB
FASTQ file (single-end)
nsun2-hek293t-untreated-20120806-lue56-3.fastq.gz
162.21 MB
fastqc
Directory
stderr.txt
1.44 kB
nsun2-hek293t-untreated-20120806-lue56-3_fastqc.zip
450.58 kB
iCount summary
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_single_summary_subtype.tsv
1009 B
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_single_summary_gene.tsv
586.54 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_single_summary_type.tsv
432 B
Paraclu
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_single_peaks.bed.gz
7.13 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_single.tar.gz
393.68 kB
Cutadapt (single-end)
nsun2-hek293t-untreated-20120806-lue56-3_trimmed.fastq.gz
167.89 MB
report.txt
676 B
fastqc
Directory
STAR
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_unmapped.out.mate1.fastq.gz
16.96 MB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed.bam
377.96 MB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed.bam.bai
2.27 MB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_SJ.out.tab
102.86 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_stats.txt
1.81 kB
iCount xlsites
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_skipped.bam
12.67 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_singleAndMulti.bed.gz
817.81 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_reads_single.bed.gz
248.02 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_single.bedgraph
915.54 kB
nsun2-hek293t-untreated-20120806-lue56-3_trimmed_single.bed.gz
230.62 kB

NSUN2_HEK293T_Untreated_20120628_LUe49

K-mers
nsun2-hek293t-untreated-20120628-lue49.tar.gz
140 B
Cutadapt (single-end)
report.txt
673 B
fastqc
Directory
nsun2-hek293t-untreated-20120628-lue49_trimmed.fastq.gz
56.63 MB
STAR
nsun2-hek293t-untreated-20120628-lue49_trimmed_unmapped.out.mate1.fastq.gz
7.11 MB
nsun2-hek293t-untreated-20120628-lue49_trimmed.bam
121.29 MB
nsun2-hek293t-untreated-20120628-lue49_trimmed.bam.bai
1.57 MB
nsun2-hek293t-untreated-20120628-lue49_trimmed_stats.txt
1.80 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_SJ.out.tab
5.84 kB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue49_trimmed_single.bed.gz
21.93 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_skipped.bam
3.19 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_singleAndMulti.bed.gz
92.85 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_reads_single.bed.gz
23.93 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_single.bedgraph
77.98 kB
FASTQ file (single-end)
nsun2-hek293t-untreated-20120628-lue49.fastq.gz
54.31 MB
fastqc
Directory
stderr.txt
1.40 kB
nsun2-hek293t-untreated-20120628-lue49_fastqc.zip
446.77 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120628-lue49_trimmed_single.tar.gz
268.59 kB
iCount summary
nsun2-hek293t-untreated-20120628-lue49_trimmed_single_summary_type.tsv
422 B
nsun2-hek293t-untreated-20120628-lue49_trimmed_single_summary_gene.tsv
45.75 kB
nsun2-hek293t-untreated-20120628-lue49_trimmed_single_summary_subtype.tsv
651 B
Paraclu
nsun2-hek293t-untreated-20120628-lue49_trimmed_single_peaks.bed.gz
1.82 kB

NSUN2_HEK293T_Untreated_20120628_LUe49_1

Cutadapt (single-end)
fastqc
Directory
report.txt
675 B
nsun2-hek293t-untreated-20120628-lue49-1_trimmed.fastq.gz
43.22 MB
STAR
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_unmapped.out.mate1.fastq.gz
2.98 MB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed.bam.bai
1.57 MB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed.bam
83.14 MB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_SJ.out.tab
6.33 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_stats.txt
1.80 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed.bw
16.86 kB
iCount xlsites
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single.bed.gz
19.90 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_skipped.bam
2.90 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_singleAndMulti.bed.gz
82.54 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_reads_single.bed.gz
21.70 kB
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single.bedgraph
72.62 kB
FASTQ file (single-end)
fastqc
Directory
nsun2-hek293t-untreated-20120628-lue49-1.fastq.gz
41.29 MB
stderr.txt
1.44 kB
nsun2-hek293t-untreated-20120628-lue49-1_fastqc.zip
461.62 kB
iCount summary
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single_summary_type.tsv
421 B
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single_summary_subtype.tsv
785 B
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single_summary_gene.tsv
33.34 kB
Paraclu
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single_peaks.bed.gz
2.17 kB
iCount RNA-maps
nsun2-hek293t-untreated-20120628-lue49-1_trimmed_single.tar.gz
253.21 kB
K-mers
nsun2-hek293t-untreated-20120628-lue49-1.tar.gz
141 B