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Folder iconRNA targets and splicing regulation by TDP-43

Rahul Arora
June 13, 2019
TDP-43 is a predominantly nuclear RNA-binding protein that forms inclusion bodies in frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). The mRNA targets of TDP-43 in the human brain and its role in RNA processing are largely unknown. Using individual-nucleotide resolution UV-crosslinking and immunoprecipitation (iCLIP), we demonstrated that TDP-43 preferentially binds long clusters of UG-rich sequences in vivo. Analysis of TDP-43 RNA binding in FTLD-TDP brains revealed the greatest increases in binding to MALAT1 and NEAT1 non-coding RNAs. We also showed that TDP-43 binding on pre-mRNAs influences alternative splicing in a similar position-dependent manner to Nova proteins. In addition, we identified unusually long clusters of TDP-43 binding at deep intronic positions downstream of silenced exons. A significant proportion of alternative mRNA isoforms regulated by TDP-43 encode proteins that regulate neuronal development or are implicated in neurological diseases, highlighting the importance of TDP-43 for splicing regulation in the brain.

TARDBP_Temporal_cortex_FTLD_F24_20090724_LUjt2

K-mers
tardbp-temporal-cortex-ftld-f24-20090724-lujt2.tar.gz
291.75 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-ftld-f24-20090724-lujt2.fastq.gz
49.21 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_fastqc.zip
384.15 kB
stderr.txt
1.67 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed.fastq.gz
49.78 MB
STAR
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_unmapped.out.mate1.fastq.gz
19.78 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_SJ.out.tab
115.57 kB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed.bam.bai
3.42 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed.bam
152.01 MB
iCount xlsites
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_singleAndMulti.bed.gz
1.83 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single.bedgraph
2.39 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_reads_single.bed.gz
680.25 kB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_skipped.bam
3.14 kB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single.bed.gz
610.41 kB
iCount RNA-maps
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single.tar.gz
500.70 kB
iCount summary
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single_summary_type.tsv
425 B
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single_summary_subtype.tsv
992 B
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single_summary_gene.tsv
995.54 kB
Paraclu
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single_peaks.bed.gz
2.41 kB

TARDBP_Temporal_cortex_Alzheimer_A12_20090724_LUjt2

FASTQ file (single-end)
stderr.txt
1.77 kB
fastqc
Directory
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_fastqc.zip
358.68 kB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2.fastq.gz
47.06 MB
Cutadapt (single-end)
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed.fastq.gz
48.12 MB
report.txt
686 B
fastqc
Directory
STAR
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed.bam
154.40 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed.bam.bai
3.57 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_unmapped.out.mate1.fastq.gz
10.62 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_SJ.out.tab
135.31 kB
iCount xlsites
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_skipped.bam
3.04 kB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_singleAndMulti.bed.gz
2.38 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_reads_single.bed.gz
1.08 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single.bedgraph
4.04 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single.bed.gz
988.25 kB
Paraclu
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single_peaks.bed.gz
4.16 kB
iCount summary
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single_summary_type.tsv
434 B
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single_summary_gene.tsv
1.10 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single_summary_subtype.tsv
996 B
K-mers
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2.tar.gz
323.63 kB
iCount RNA-maps
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single.tar.gz
575.17 kB

TARDBP_Temporal_cortex_FTLD_F21_20090724_LUjt1

Paraclu
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single_peaks.bed.gz
2.03 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-ftld-f21-20090724-lujt1.fastq.gz
48.61 MB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_fastqc.zip
363.84 kB
stderr.txt
1.67 kB
K-mers
tardbp-temporal-cortex-ftld-f21-20090724-lujt1.tar.gz
309.75 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed.fastq.gz
49.03 MB
STAR
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_unmapped.out.mate1.fastq.gz
14.76 MB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_SJ.out.tab
87.86 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed.bam
98.19 MB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed.bw
29.77 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed.bam.bai
3.50 MB
iCount xlsites
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single.bed.gz
632.34 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_skipped.bam
2.90 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_reads_single.bed.gz
730.32 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_singleAndMulti.bed.gz
1.76 MB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single.bedgraph
2.49 MB
iCount summary
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single_summary_subtype.tsv
993 B
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single_summary_gene.tsv
960.22 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single_summary_type.tsv
425 B
iCount RNA-maps
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single.tar.gz
489.96 kB

TARDBP_SHSY5Y__20100222_LUjt3A

iCount summary
tardbp-shsy5y-20100222-lujt3a_trimmed_single_summary_type.tsv
428 B
tardbp-shsy5y-20100222-lujt3a_trimmed_single_summary_subtype.tsv
1007 B
tardbp-shsy5y-20100222-lujt3a_trimmed_single_summary_gene.tsv
1.33 MB
iCount RNA-maps
tardbp-shsy5y-20100222-lujt3a_trimmed_single.tar.gz
756.69 kB
Paraclu
tardbp-shsy5y-20100222-lujt3a_trimmed_single_peaks.bed.gz
38.01 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-shsy5y-20100222-lujt3a.fastq.gz
130.46 MB
stderr.txt
1.34 kB
tardbp-shsy5y-20100222-lujt3a_fastqc.zip
380.93 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
tardbp-shsy5y-20100222-lujt3a_trimmed.fastq.gz
126.49 MB
STAR
tardbp-shsy5y-20100222-lujt3a_trimmed_unmapped.out.mate1.fastq.gz
10.32 MB
tardbp-shsy5y-20100222-lujt3a_trimmed.bam
177.02 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_SJ.out.tab
189.79 kB
tardbp-shsy5y-20100222-lujt3a_trimmed.bw
79.27 kB
tardbp-shsy5y-20100222-lujt3a_trimmed.bam.bai
4.15 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_stats.txt
1.80 kB
iCount xlsites
tardbp-shsy5y-20100222-lujt3a_trimmed_skipped.bam
3.49 kB
tardbp-shsy5y-20100222-lujt3a_trimmed_single.bed.gz
4.02 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_singleAndMulti.bed.gz
6.89 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_reads_single.bed.gz
4.49 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_single.bedgraph
18.33 MB
K-mers
tardbp-shsy5y-20100222-lujt3a.tar.gz
391.45 kB

TARDBP_SHSY5Y__20100222_LUjt3

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.32 kB
tardbp-shsy5y-20100222-lujt3_fastqc.zip
349.76 kB
tardbp-shsy5y-20100222-lujt3.fastq.gz
87.83 MB
Cutadapt (single-end)
report.txt
663 B
fastqc
Directory
tardbp-shsy5y-20100222-lujt3_trimmed.fastq.gz
89.06 MB
STAR
tardbp-shsy5y-20100222-lujt3_trimmed_stats.txt
1.80 kB
tardbp-shsy5y-20100222-lujt3_trimmed.bam
130.51 MB
tardbp-shsy5y-20100222-lujt3_trimmed_unmapped.out.mate1.fastq.gz
10.07 MB
tardbp-shsy5y-20100222-lujt3_trimmed_SJ.out.tab
133.74 kB
tardbp-shsy5y-20100222-lujt3_trimmed.bam.bai
4.16 MB
tardbp-shsy5y-20100222-lujt3_trimmed.bw
76.37 kB
iCount xlsites
tardbp-shsy5y-20100222-lujt3_trimmed_skipped.bam
2.90 kB
tardbp-shsy5y-20100222-lujt3_trimmed_singleAndMulti.bed.gz
6.52 MB
tardbp-shsy5y-20100222-lujt3_trimmed_single.bed.gz
3.75 MB
tardbp-shsy5y-20100222-lujt3_trimmed_single.bedgraph
17.07 MB
tardbp-shsy5y-20100222-lujt3_trimmed_reads_single.bed.gz
4.17 MB
Paraclu
tardbp-shsy5y-20100222-lujt3_trimmed_single_peaks.bed.gz
35.47 kB
iCount RNA-maps
tardbp-shsy5y-20100222-lujt3_trimmed_single.tar.gz
743.74 kB
iCount summary
tardbp-shsy5y-20100222-lujt3_trimmed_single_summary_type.tsv
431 B
tardbp-shsy5y-20100222-lujt3_trimmed_single_summary_subtype.tsv
1012 B
tardbp-shsy5y-20100222-lujt3_trimmed_single_summary_gene.tsv
1.33 MB
K-mers
tardbp-shsy5y-20100222-lujt3.tar.gz
398.33 kB

TARDBP_NSC__20100222_LUjt3

K-mers
tardbp-nsc-20100222-lujt3.tar.gz
453.22 kB
STAR
tardbp-nsc-20100222-lujt3_trimmed_unmapped.out.mate1.fastq.gz
16.93 MB
tardbp-nsc-20100222-lujt3_trimmed_stats.txt
1.80 kB
tardbp-nsc-20100222-lujt3_trimmed.bam
275.31 MB
tardbp-nsc-20100222-lujt3_trimmed_SJ.out.tab
329.75 kB
tardbp-nsc-20100222-lujt3_trimmed.bam.bai
4.26 MB
tardbp-nsc-20100222-lujt3_trimmed.bw
94.51 kB
iCount summary
tardbp-nsc-20100222-lujt3_trimmed_single_summary_type.tsv
435 B
tardbp-nsc-20100222-lujt3_trimmed_single_summary_gene.tsv
1.64 MB
tardbp-nsc-20100222-lujt3_trimmed_single_summary_subtype.tsv
1021 B
FASTQ file (single-end)
fastqc
Directory
tardbp-nsc-20100222-lujt3.fastq.gz
180.37 MB
stderr.txt
1.26 kB
tardbp-nsc-20100222-lujt3_fastqc.zip
350.10 kB
Cutadapt (single-end)
tardbp-nsc-20100222-lujt3_trimmed.fastq.gz
181.74 MB
fastqc
Directory
report.txt
661 B
iCount xlsites
tardbp-nsc-20100222-lujt3_trimmed_reads_single.bed.gz
10.57 MB
tardbp-nsc-20100222-lujt3_trimmed_single.bed.gz
9.76 MB
tardbp-nsc-20100222-lujt3_trimmed_skipped.bam
3.27 kB
tardbp-nsc-20100222-lujt3_trimmed_singleAndMulti.bed.gz
15.39 MB
tardbp-nsc-20100222-lujt3_trimmed_single.bedgraph
45.45 MB
iCount RNA-maps
tardbp-nsc-20100222-lujt3_trimmed_single.tar.gz
1.12 MB
Paraclu
tardbp-nsc-20100222-lujt3_trimmed_single_peaks.bed.gz
131.23 kB

20090724_LUjt1_090715_42L7HAAXX_s_4.fq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.34 kB
20090724_LUjt1_090715_42L7HAAXX_s_4_fastqc.zip
475.50 kB
20090724_LUjt1_090715_42L7HAAXX_s_4.fastq.gz
233.57 MB

20090724_LUjt2_090715_42L7HAAXX-s_5.fq.gz

FASTQ file (single-end)
fastqc
Directory
20090724_LUjt2_090715_42L7HAAXX-s_5_fastqc.zip
469.97 kB
stderr.txt
1.34 kB
20090724_LUjt2_090715_42L7HAAXX-s_5.fastq.gz
191.12 MB

20100222_LUjt3_090717_42L87AAXX_s_7.fq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.34 kB
20100222_LUjt3_090717_42L87AAXX_s_7.fastq.gz
549.87 MB
20100222_LUjt3_090717_42L87AAXX_s_7_fastqc.zip
453.07 kB

20100222_LUjt3A_SLX_1796_CRIRUN_320_s_6_sequence.fq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.60 kB
20100222_LUjt3A_SLX_1796_CRIRUN_320_s_6_sequence.fastq.gz
784.73 MB
20100222_LUjt3A_SLX_1796_CRIRUN_320_s_6_sequence_fastqc.zip
546.60 kB

20091102_LUjt5_091012_42RHWAAXX_s_3.fq.gz

FASTQ file (single-end)
fastqc
Directory
20091102_LUjt5_091012_42RHWAAXX_s_3.fastq.gz
701.82 MB
stderr.txt
1.34 kB
20091102_LUjt5_091012_42RHWAAXX_s_3_fastqc.zip
518.95 kB

20101125_LUjt8_SLX_3093_CRIRUN_502_s_5_sequence.fq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20101125_LUjt8_SLX_3093_CRIRUN_502_s_5_sequence.fastq.gz
955.28 MB
20101125_LUjt8_SLX_3093_CRIRUN_502_s_5_sequence_fastqc.zip
584.91 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
45.98 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
494.94 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch_fastqc.zip
462.01 kB
demux_nomatch.fastq.gz
10.12 MB
stderr.txt
935 B

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
215.13 MB
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
469.47 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
486.53 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
528.21 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
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demux_nomatch.fastq.gz
292.14 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
556.53 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
518.27 MB
fastqc
Directory
demux_nomatch_fastqc.zip
604.09 kB
stderr.txt
935 B

TARDBP_Temporal_cortex_Alzheimer_A11_20090724_LUjt2

iCount RNA-maps
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single.tar.gz
487.85 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2.fastq.gz
17.25 MB
stderr.txt
1.77 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_fastqc.zip
363.00 kB
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed.fastq.gz
17.42 MB
STAR
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_unmapped.out.mate1.fastq.gz
4.45 MB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_SJ.out.tab
62.60 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed.bw
24.92 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed.bam
44.41 MB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed.bam.bai
2.88 MB
iCount xlsites
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single.bed.gz
436.83 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_skipped.bam
2.90 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_singleAndMulti.bed.gz
1.10 MB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_reads_single.bed.gz
483.52 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single.bedgraph
1.70 MB
iCount summary
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single_summary_type.tsv
421 B
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single_summary_gene.tsv
875.33 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single_summary_subtype.tsv
985 B
Paraclu
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single_peaks.bed.gz
1.15 kB
K-mers
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2.tar.gz
218.07 kB

TARDBP_Temporal_cortex_C30_20090724_LUjt1

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.57 kB
tardbp-temporal-cortex-c30-20090724-lujt1.fastq.gz
68.70 MB
tardbp-temporal-cortex-c30-20090724-lujt1_fastqc.zip
367.91 kB
iCount RNA-maps
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single.tar.gz
524.58 kB
iCount summary
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single_summary_type.tsv
430 B
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single_summary_subtype.tsv
999 B
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single_summary_gene.tsv
1011.78 kB
Paraclu
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single_peaks.bed.gz
4.93 kB
Cutadapt (single-end)
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed.fastq.gz
68.73 MB
report.txt
676 B
fastqc
Directory
STAR
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_unmapped.out.mate1.fastq.gz
17.92 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed.bam
136.19 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed.bam.bai
3.62 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_SJ.out.tab
201.68 kB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed.bw
33.27 kB
iCount xlsites
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_singleAndMulti.bed.gz
2.32 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single.bed.gz
679.70 kB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_skipped.bam
3.24 kB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single.bedgraph
2.68 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_reads_single.bed.gz
784.17 kB
K-mers
tardbp-temporal-cortex-c30-20090724-lujt1.tar.gz
344.26 kB

TARDBP_Temporal_cortex_FTLD_F20_20090724_LUjt1

FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-ftld-f20-20090724-lujt1.fastq.gz
62.44 MB
stderr.txt
1.67 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_fastqc.zip
367.32 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed.fastq.gz
63.58 MB
STAR
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed.bam.bai
3.07 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed.bam
216.94 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_unmapped.out.mate1.fastq.gz
18.76 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_SJ.out.tab
77.96 kB
iCount xlsites
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single.bed.gz
432.82 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_reads_single.bed.gz
497.34 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single.bedgraph
1.65 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_singleAndMulti.bed.gz
1.42 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_skipped.bam
3.07 kB
iCount RNA-maps
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single.tar.gz
484.62 kB
Paraclu
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single_peaks.bed.gz
2.74 kB
iCount summary
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single_summary_type.tsv
428 B
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single_summary_gene.tsv
925.06 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single_summary_subtype.tsv
998 B
K-mers
tardbp-temporal-cortex-ftld-f20-20090724-lujt1.tar.gz
291.16 kB

TARDBP_SHSY5Y_Low_20091102_LUjt5

FASTQ file (single-end)
fastqc
Directory
tardbp-shsy5y-low-20091102-lujt5.fastq.gz
79.16 MB
tardbp-shsy5y-low-20091102-lujt5_fastqc.zip
373.66 kB
stderr.txt
1.40 kB
Cutadapt (single-end)
fastqc
Directory
tardbp-shsy5y-low-20091102-lujt5_trimmed.fastq.gz
73.14 MB
report.txt
668 B
STAR
tardbp-shsy5y-low-20091102-lujt5_trimmed.bam.bai
3.79 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_unmapped.out.mate1.fastq.gz
12.86 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_SJ.out.tab
117.00 kB
tardbp-shsy5y-low-20091102-lujt5_trimmed.bam
102.45 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_stats.txt
1.80 kB
tardbp-shsy5y-low-20091102-lujt5_trimmed.bw
41.99 kB
iCount xlsites
tardbp-shsy5y-low-20091102-lujt5_trimmed_skipped.bam
2.90 kB
tardbp-shsy5y-low-20091102-lujt5_trimmed_single.bed.gz
1.07 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_singleAndMulti.bed.gz
2.55 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_single.bedgraph
4.52 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_reads_single.bed.gz
1.27 MB
iCount RNA-maps
tardbp-shsy5y-low-20091102-lujt5_trimmed_single.tar.gz
529.69 kB
K-mers
tardbp-shsy5y-low-20091102-lujt5.tar.gz
337.83 kB
iCount summary
tardbp-shsy5y-low-20091102-lujt5_trimmed_single_summary_subtype.tsv
942 B
tardbp-shsy5y-low-20091102-lujt5_trimmed_single_summary_gene.tsv
1.02 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_single_summary_type.tsv
434 B
Paraclu
tardbp-shsy5y-low-20091102-lujt5_trimmed_single_peaks.bed.gz
4.97 kB

TARDBP_Temporal_cortex__20091102_LUjt5

iCount summary
tardbp-temporal-cortex-20091102-lujt5_trimmed_single_summary_subtype.tsv
997 B
tardbp-temporal-cortex-20091102-lujt5_trimmed_single_summary_type.tsv
428 B
tardbp-temporal-cortex-20091102-lujt5_trimmed_single_summary_gene.tsv
984.25 kB
iCount RNA-maps
tardbp-temporal-cortex-20091102-lujt5_trimmed_single.tar.gz
518.43 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-20091102-lujt5_fastqc.zip
400.26 kB
stderr.txt
1.49 kB
tardbp-temporal-cortex-20091102-lujt5.fastq.gz
30.37 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
tardbp-temporal-cortex-20091102-lujt5_trimmed.fastq.gz
24.44 MB
STAR
tardbp-temporal-cortex-20091102-lujt5_trimmed_unmapped.out.mate1.fastq.gz
4.67 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-20091102-lujt5_trimmed.bam.bai
3.36 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed_SJ.out.tab
79.84 kB
tardbp-temporal-cortex-20091102-lujt5_trimmed.bam
46.32 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed.bw
26.75 kB
iCount xlsites
tardbp-temporal-cortex-20091102-lujt5_trimmed_single.bed.gz
728.45 kB
tardbp-temporal-cortex-20091102-lujt5_trimmed_singleAndMulti.bed.gz
1.58 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed_single.bedgraph
2.81 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed_reads_single.bed.gz
808.57 kB
tardbp-temporal-cortex-20091102-lujt5_trimmed_skipped.bam
2.90 kB
Paraclu
tardbp-temporal-cortex-20091102-lujt5_trimmed_single_peaks.bed.gz
1.85 kB
K-mers
tardbp-temporal-cortex-20091102-lujt5.tar.gz
349.35 kB

TARDBP_NSC__20100222_LUjt3A

STAR
tardbp-nsc-20100222-lujt3a_trimmed_stats.txt
1.80 kB
tardbp-nsc-20100222-lujt3a_trimmed_unmapped.out.mate1.fastq.gz
14.65 MB
tardbp-nsc-20100222-lujt3a_trimmed.bam
316.80 MB
tardbp-nsc-20100222-lujt3a_trimmed.bam.bai
4.12 MB
tardbp-nsc-20100222-lujt3a_trimmed_SJ.out.tab
441.74 kB
iCount summary
tardbp-nsc-20100222-lujt3a_trimmed_single_summary_type.tsv
436 B
tardbp-nsc-20100222-lujt3a_trimmed_single_summary_subtype.tsv
1022 B
tardbp-nsc-20100222-lujt3a_trimmed_single_summary_gene.tsv
1.60 MB
FASTQ file (single-end)
stderr.txt
1.28 kB
fastqc
Directory
tardbp-nsc-20100222-lujt3a.fastq.gz
238.81 MB
tardbp-nsc-20100222-lujt3a_fastqc.zip
365.01 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
663 B
tardbp-nsc-20100222-lujt3a_trimmed.fastq.gz
231.35 MB
Paraclu
tardbp-nsc-20100222-lujt3a_trimmed_single_peaks.bed.gz
119.60 kB
iCount xlsites
tardbp-nsc-20100222-lujt3a_trimmed_single.bed.gz
9.54 MB
tardbp-nsc-20100222-lujt3a_trimmed_singleAndMulti.bed.gz
14.17 MB
tardbp-nsc-20100222-lujt3a_trimmed_reads_single.bed.gz
10.41 MB
tardbp-nsc-20100222-lujt3a_trimmed_skipped.bam
3.25 kB
tardbp-nsc-20100222-lujt3a_trimmed_single.bedgraph
44.41 MB
iCount RNA-maps
tardbp-nsc-20100222-lujt3a_trimmed_single.tar.gz
1.09 MB
K-mers
tardbp-nsc-20100222-lujt3a.tar.gz
449.53 kB

TARDBP_Hela__20100222_LUjt3A

iCount summary
tardbp-hela-20100222-lujt3a_trimmed_single_summary_type.tsv
420 B
tardbp-hela-20100222-lujt3a_trimmed_single_summary_subtype.tsv
976 B
tardbp-hela-20100222-lujt3a_trimmed_single_summary_gene.tsv
745.85 kB
FASTQ file (single-end)
tardbp-hela-20100222-lujt3a.fastq.gz
10.07 MB
fastqc
Directory
stderr.txt
1.30 kB
tardbp-hela-20100222-lujt3a_fastqc.zip
368.90 kB
K-mers
tardbp-hela-20100222-lujt3a.tar.gz
213.79 kB
Cutadapt (single-end)
fastqc
Directory
tardbp-hela-20100222-lujt3a_trimmed.fastq.gz
9.55 MB
report.txt
663 B
STAR
tardbp-hela-20100222-lujt3a_trimmed_unmapped.out.mate1.fastq.gz
1.54 MB
tardbp-hela-20100222-lujt3a_trimmed_stats.txt
1.79 kB
tardbp-hela-20100222-lujt3a_trimmed.bam.bai
2.42 MB
tardbp-hela-20100222-lujt3a_trimmed_SJ.out.tab
26.86 kB
tardbp-hela-20100222-lujt3a_trimmed.bam
13.88 MB
tardbp-hela-20100222-lujt3a_trimmed.bw
23.42 kB
iCount xlsites
tardbp-hela-20100222-lujt3a_trimmed_single.bed.gz
494.17 kB
tardbp-hela-20100222-lujt3a_trimmed_singleAndMulti.bed.gz
736.62 kB
tardbp-hela-20100222-lujt3a_trimmed_skipped.bam
2.90 kB
tardbp-hela-20100222-lujt3a_trimmed_reads_single.bed.gz
533.86 kB
tardbp-hela-20100222-lujt3a_trimmed_single.bedgraph
2.02 MB
iCount RNA-maps
tardbp-hela-20100222-lujt3a_trimmed_single.tar.gz
455.80 kB
Paraclu
tardbp-hela-20100222-lujt3a_trimmed_single_peaks.bed.gz
1.15 kB

TARDBP_SHSY5Y_Total_20101125_LUjt8

K-mers
tardbp-shsy5y-total-20101125-lujt8.tar.gz
358.69 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-shsy5y-total-20101125-lujt8.fastq.gz
213.25 MB
tardbp-shsy5y-total-20101125-lujt8_fastqc.zip
391.60 kB
stderr.txt
1.32 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
671 B
tardbp-shsy5y-total-20101125-lujt8_trimmed.fastq.gz
198.98 MB
STAR
tardbp-shsy5y-total-20101125-lujt8_trimmed.bam.bai
4.88 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed.bam
316.87 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_unmapped.out.mate1.fastq.gz
52.61 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_stats.txt
1.81 kB
tardbp-shsy5y-total-20101125-lujt8_trimmed_SJ.out.tab
196.38 kB
iCount xlsites
tardbp-shsy5y-total-20101125-lujt8_trimmed_reads_single.bed.gz
1.50 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_skipped.bam
3.12 kB
tardbp-shsy5y-total-20101125-lujt8_trimmed_singleAndMulti.bed.gz
6.13 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_single.bedgraph
5.25 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_single.bed.gz
1.27 MB
Paraclu
tardbp-shsy5y-total-20101125-lujt8_trimmed_single_peaks.bed.gz
7.36 kB
iCount summary
tardbp-shsy5y-total-20101125-lujt8_trimmed_single_summary_gene.tsv
1.15 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_single_summary_subtype.tsv
1016 B
tardbp-shsy5y-total-20101125-lujt8_trimmed_single_summary_type.tsv
434 B
iCount RNA-maps
tardbp-shsy5y-total-20101125-lujt8_trimmed_single.tar.gz
526.76 kB

No Sample

K-mers
tardbp-shsy5y-total-20101125-lujt8.tar.gz
358.69 kB
FASTQ file (single-end)
stderr.txt
1.77 kB
fastqc
Directory
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_fastqc.zip
358.68 kB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2.fastq.gz
47.06 MB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch_fastqc.zip
462.01 kB
demux_nomatch.fastq.gz
10.12 MB
stderr.txt
935 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.57 kB
tardbp-temporal-cortex-c30-20090724-lujt1.fastq.gz
68.70 MB
tardbp-temporal-cortex-c30-20090724-lujt1_fastqc.zip
367.91 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
518.27 MB
fastqc
Directory
demux_nomatch_fastqc.zip
604.09 kB
stderr.txt
935 B
iCount RNA-maps
tardbp-shsy5y-20100222-lujt3a_trimmed_single.tar.gz
756.69 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
45.98 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
494.94 kB
iCount RNA-maps
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single.tar.gz
524.58 kB
iCount RNA-maps
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single.tar.gz
487.85 kB
Paraclu
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single_peaks.bed.gz
2.03 kB
K-mers
tardbp-temporal-cortex-ftld-f24-20090724-lujt2.tar.gz
291.75 kB
Paraclu
tardbp-shsy5y-20100222-lujt3a_trimmed_single_peaks.bed.gz
38.01 kB
Upload iCount sample annotation
20100222_LUjt3A_annotation_sheet.xlsx
14.45 kB
20100222_LUjt3A_annotation_sheet.tab.gz
915 B
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
486.53 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
528.21 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
292.14 MB
stderr.txt
935 B
demux_nomatch_fastqc.zip
556.53 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2.fastq.gz
17.25 MB
stderr.txt
1.77 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_fastqc.zip
363.00 kB
STAR
tardbp-nsc-20100222-lujt3_trimmed_unmapped.out.mate1.fastq.gz
16.93 MB
tardbp-nsc-20100222-lujt3_trimmed_stats.txt
1.80 kB
tardbp-nsc-20100222-lujt3_trimmed.bam
275.31 MB
tardbp-nsc-20100222-lujt3_trimmed_SJ.out.tab
329.75 kB
tardbp-nsc-20100222-lujt3_trimmed.bam.bai
4.26 MB
tardbp-nsc-20100222-lujt3_trimmed.bw
94.51 kB
iCount summary
tardbp-nsc-20100222-lujt3_trimmed_single_summary_type.tsv
435 B
tardbp-nsc-20100222-lujt3_trimmed_single_summary_gene.tsv
1.64 MB
tardbp-nsc-20100222-lujt3_trimmed_single_summary_subtype.tsv
1021 B
iCount summary
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single_summary_type.tsv
430 B
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single_summary_subtype.tsv
999 B
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single_summary_gene.tsv
1011.78 kB
Paraclu
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single_peaks.bed.gz
4.93 kB
iCount summary
tardbp-temporal-cortex-20091102-lujt5_trimmed_single_summary_subtype.tsv
997 B
tardbp-temporal-cortex-20091102-lujt5_trimmed_single_summary_type.tsv
428 B
tardbp-temporal-cortex-20091102-lujt5_trimmed_single_summary_gene.tsv
984.25 kB
iCount summary
tardbp-hela-20100222-lujt3a_trimmed_single_summary_type.tsv
420 B
tardbp-hela-20100222-lujt3a_trimmed_single_summary_subtype.tsv
976 B
tardbp-hela-20100222-lujt3a_trimmed_single_summary_gene.tsv
745.85 kB
iCount summary
tardbp-nsc-20100222-lujt3a_trimmed_single_summary_type.tsv
436 B
tardbp-nsc-20100222-lujt3a_trimmed_single_summary_subtype.tsv
1022 B
tardbp-nsc-20100222-lujt3a_trimmed_single_summary_gene.tsv
1.60 MB
Upload iCount sample annotation
20091102_LUjt5_annotation_sheet.tab.gz
891 B
20091102_LUjt5_annotation_sheet.xlsx
14.34 kB
Upload iCount sample annotation
20090724_LUjt1_annotation_sheet.tab.gz
915 B
20090724_LUjt1_annotation_sheet.xlsx
14.56 kB
Upload iCount sample annotation
20090724_LUjt2_annotation_sheet.xlsx
14.62 kB
20090724_LUjt2_annotation_sheet.tab.gz
926 B
Upload iCount sample annotation
20100222_LUjt3_annotation_sheet.xlsx
14.31 kB
20100222_LUjt3_annotation_sheet.tab.gz
871 B
Upload iCount sample annotation
20101125_LUjt8_annotation_sheet.xlsx
14.22 kB
20101125_LUjt8_annotation_sheet.tab.gz
837 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.34 kB
20090724_LUjt1_090715_42L7HAAXX_s_4_fastqc.zip
475.50 kB
20090724_LUjt1_090715_42L7HAAXX_s_4.fastq.gz
233.57 MB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
363 B
FASTQ file (single-end)
fastqc
Directory
20090724_LUjt2_090715_42L7HAAXX-s_5_fastqc.zip
469.97 kB
stderr.txt
1.34 kB
20090724_LUjt2_090715_42L7HAAXX-s_5.fastq.gz
191.12 MB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
379 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.34 kB
20100222_LUjt3_090717_42L87AAXX_s_7.fastq.gz
549.87 MB
20100222_LUjt3_090717_42L87AAXX_s_7_fastqc.zip
453.07 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
260 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.60 kB
20100222_LUjt3A_SLX_1796_CRIRUN_320_s_6_sequence.fastq.gz
784.73 MB
20100222_LUjt3A_SLX_1796_CRIRUN_320_s_6_sequence_fastqc.zip
546.60 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
313 B
FASTQ file (single-end)
fastqc
Directory
20091102_LUjt5_091012_42RHWAAXX_s_3.fastq.gz
701.82 MB
stderr.txt
1.34 kB
20091102_LUjt5_091012_42RHWAAXX_s_3_fastqc.zip
518.95 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
276 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
20101125_LUjt8_SLX_3093_CRIRUN_502_s_5_sequence.fastq.gz
955.28 MB
20101125_LUjt8_SLX_3093_CRIRUN_502_s_5_sequence_fastqc.zip
584.91 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
216 B
FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-ftld-f24-20090724-lujt2.fastq.gz
49.21 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_fastqc.zip
384.15 kB
stderr.txt
1.67 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-ftld-f20-20090724-lujt1.fastq.gz
62.44 MB
stderr.txt
1.67 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_fastqc.zip
367.32 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-ftld-f21-20090724-lujt1.fastq.gz
48.61 MB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_fastqc.zip
363.84 kB
stderr.txt
1.67 kB
K-mers
tardbp-temporal-cortex-ftld-f21-20090724-lujt1.tar.gz
309.75 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-nsc-20100222-lujt3.fastq.gz
180.37 MB
stderr.txt
1.26 kB
tardbp-nsc-20100222-lujt3_fastqc.zip
350.10 kB
K-mers
tardbp-nsc-20100222-lujt3.tar.gz
453.22 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.32 kB
tardbp-shsy5y-20100222-lujt3_fastqc.zip
349.76 kB
tardbp-shsy5y-20100222-lujt3.fastq.gz
87.83 MB
FASTQ file (single-end)
demux_nomatch.fastq.gz
215.13 MB
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
469.47 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-shsy5y-low-20091102-lujt5.fastq.gz
79.16 MB
tardbp-shsy5y-low-20091102-lujt5_fastqc.zip
373.66 kB
stderr.txt
1.40 kB
iCount RNA-maps
tardbp-temporal-cortex-20091102-lujt5_trimmed_single.tar.gz
518.43 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-temporal-cortex-20091102-lujt5_fastqc.zip
400.26 kB
stderr.txt
1.49 kB
tardbp-temporal-cortex-20091102-lujt5.fastq.gz
30.37 MB
FASTQ file (single-end)
stderr.txt
1.28 kB
fastqc
Directory
tardbp-nsc-20100222-lujt3a.fastq.gz
238.81 MB
tardbp-nsc-20100222-lujt3a_fastqc.zip
365.01 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-shsy5y-20100222-lujt3a.fastq.gz
130.46 MB
stderr.txt
1.34 kB
tardbp-shsy5y-20100222-lujt3a_fastqc.zip
380.93 kB
FASTQ file (single-end)
tardbp-hela-20100222-lujt3a.fastq.gz
10.07 MB
fastqc
Directory
stderr.txt
1.30 kB
tardbp-hela-20100222-lujt3a_fastqc.zip
368.90 kB
K-mers
tardbp-hela-20100222-lujt3a.tar.gz
213.79 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-shsy5y-total-20101125-lujt8.fastq.gz
213.25 MB
tardbp-shsy5y-total-20101125-lujt8_fastqc.zip
391.60 kB
stderr.txt
1.32 kB
Cutadapt (single-end)
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed.fastq.gz
48.12 MB
report.txt
686 B
fastqc
Directory
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed.fastq.gz
17.42 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed.fastq.gz
49.78 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed.fastq.gz
49.03 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed.fastq.gz
63.58 MB
Cutadapt (single-end)
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed.fastq.gz
68.73 MB
report.txt
676 B
fastqc
Directory
Cutadapt (single-end)
tardbp-nsc-20100222-lujt3_trimmed.fastq.gz
181.74 MB
fastqc
Directory
report.txt
661 B
Cutadapt (single-end)
report.txt
663 B
fastqc
Directory
tardbp-shsy5y-20100222-lujt3_trimmed.fastq.gz
89.06 MB
Cutadapt (single-end)
fastqc
Directory
tardbp-shsy5y-low-20091102-lujt5_trimmed.fastq.gz
73.14 MB
report.txt
668 B
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
tardbp-temporal-cortex-20091102-lujt5_trimmed.fastq.gz
24.44 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
663 B
tardbp-nsc-20100222-lujt3a_trimmed.fastq.gz
231.35 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
tardbp-shsy5y-20100222-lujt3a_trimmed.fastq.gz
126.49 MB
Cutadapt (single-end)
fastqc
Directory
tardbp-hela-20100222-lujt3a_trimmed.fastq.gz
9.55 MB
report.txt
663 B
Cutadapt (single-end)
fastqc
Directory
report.txt
671 B
tardbp-shsy5y-total-20101125-lujt8_trimmed.fastq.gz
198.98 MB
STAR
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed.bam
154.40 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed.bam.bai
3.57 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_unmapped.out.mate1.fastq.gz
10.62 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_SJ.out.tab
135.31 kB
STAR
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_unmapped.out.mate1.fastq.gz
4.45 MB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_SJ.out.tab
62.60 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed.bw
24.92 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed.bam
44.41 MB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed.bam.bai
2.88 MB
STAR
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_unmapped.out.mate1.fastq.gz
19.78 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_SJ.out.tab
115.57 kB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed.bam.bai
3.42 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed.bam
152.01 MB
iCount xlsites
tardbp-nsc-20100222-lujt3_trimmed_single.bed.gz
9.76 MB
tardbp-nsc-20100222-lujt3_trimmed_reads_single.bed.gz
10.57 MB
tardbp-nsc-20100222-lujt3_trimmed_skipped.bam
3.27 kB
tardbp-nsc-20100222-lujt3_trimmed_singleAndMulti.bed.gz
15.39 MB
tardbp-nsc-20100222-lujt3_trimmed_single.bedgraph
45.45 MB
STAR
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_unmapped.out.mate1.fastq.gz
14.76 MB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_SJ.out.tab
87.86 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed.bam
98.19 MB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed.bw
29.77 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed.bam.bai
3.50 MB
STAR
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed.bam.bai
3.07 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed.bam
216.94 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_unmapped.out.mate1.fastq.gz
18.76 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_SJ.out.tab
77.96 kB
STAR
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_unmapped.out.mate1.fastq.gz
17.92 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed.bam
136.19 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed.bam.bai
3.62 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_SJ.out.tab
201.68 kB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed.bw
33.27 kB
STAR
tardbp-shsy5y-20100222-lujt3_trimmed_stats.txt
1.80 kB
tardbp-shsy5y-20100222-lujt3_trimmed.bam
130.51 MB
tardbp-shsy5y-20100222-lujt3_trimmed_unmapped.out.mate1.fastq.gz
10.07 MB
tardbp-shsy5y-20100222-lujt3_trimmed_SJ.out.tab
133.74 kB
tardbp-shsy5y-20100222-lujt3_trimmed.bam.bai
4.16 MB
tardbp-shsy5y-20100222-lujt3_trimmed.bw
76.37 kB
STAR
tardbp-shsy5y-low-20091102-lujt5_trimmed.bam.bai
3.79 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_unmapped.out.mate1.fastq.gz
12.86 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_SJ.out.tab
117.00 kB
tardbp-shsy5y-low-20091102-lujt5_trimmed.bam
102.45 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_stats.txt
1.80 kB
tardbp-shsy5y-low-20091102-lujt5_trimmed.bw
41.99 kB
STAR
tardbp-temporal-cortex-20091102-lujt5_trimmed_unmapped.out.mate1.fastq.gz
4.67 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed_stats.txt
1.80 kB
tardbp-temporal-cortex-20091102-lujt5_trimmed.bam.bai
3.36 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed_SJ.out.tab
79.84 kB
tardbp-temporal-cortex-20091102-lujt5_trimmed.bam
46.32 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed.bw
26.75 kB
STAR
tardbp-nsc-20100222-lujt3a_trimmed_unmapped.out.mate1.fastq.gz
14.65 MB
tardbp-nsc-20100222-lujt3a_trimmed.bam
316.80 MB
tardbp-nsc-20100222-lujt3a_trimmed_stats.txt
1.80 kB
tardbp-nsc-20100222-lujt3a_trimmed.bam.bai
4.12 MB
tardbp-nsc-20100222-lujt3a_trimmed_SJ.out.tab
441.74 kB
STAR
tardbp-shsy5y-20100222-lujt3a_trimmed_unmapped.out.mate1.fastq.gz
10.32 MB
tardbp-shsy5y-20100222-lujt3a_trimmed.bam
177.02 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_SJ.out.tab
189.79 kB
tardbp-shsy5y-20100222-lujt3a_trimmed.bw
79.27 kB
tardbp-shsy5y-20100222-lujt3a_trimmed.bam.bai
4.15 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_stats.txt
1.80 kB
STAR
tardbp-hela-20100222-lujt3a_trimmed_unmapped.out.mate1.fastq.gz
1.54 MB
tardbp-hela-20100222-lujt3a_trimmed_stats.txt
1.79 kB
tardbp-hela-20100222-lujt3a_trimmed.bam.bai
2.42 MB
tardbp-hela-20100222-lujt3a_trimmed_SJ.out.tab
26.86 kB
tardbp-hela-20100222-lujt3a_trimmed.bam
13.88 MB
tardbp-hela-20100222-lujt3a_trimmed.bw
23.42 kB
iCount xlsites
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single.bed.gz
436.83 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_skipped.bam
2.90 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_singleAndMulti.bed.gz
1.10 MB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_reads_single.bed.gz
483.52 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single.bedgraph
1.70 MB
STAR
tardbp-shsy5y-total-20101125-lujt8_trimmed.bam.bai
4.88 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed.bam
316.87 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_unmapped.out.mate1.fastq.gz
52.61 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_stats.txt
1.81 kB
tardbp-shsy5y-total-20101125-lujt8_trimmed_SJ.out.tab
196.38 kB
iCount xlsites
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_skipped.bam
3.04 kB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_singleAndMulti.bed.gz
2.38 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_reads_single.bed.gz
1.08 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single.bedgraph
4.04 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single.bed.gz
988.25 kB
iCount xlsites
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single.bed.gz
632.34 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_skipped.bam
2.90 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_reads_single.bed.gz
730.32 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_singleAndMulti.bed.gz
1.76 MB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single.bedgraph
2.49 MB
iCount xlsites
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_singleAndMulti.bed.gz
1.83 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single.bedgraph
2.39 MB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_reads_single.bed.gz
680.25 kB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_skipped.bam
3.14 kB
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single.bed.gz
610.41 kB
iCount RNA-maps
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single.tar.gz
500.70 kB
iCount xlsites
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_singleAndMulti.bed.gz
2.32 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single.bed.gz
679.70 kB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_skipped.bam
3.24 kB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_single.bedgraph
2.68 MB
tardbp-temporal-cortex-c30-20090724-lujt1_trimmed_reads_single.bed.gz
784.17 kB
iCount xlsites
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single.bed.gz
432.82 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_reads_single.bed.gz
497.34 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single.bedgraph
1.65 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_singleAndMulti.bed.gz
1.42 MB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_skipped.bam
3.07 kB
iCount xlsites
tardbp-shsy5y-low-20091102-lujt5_trimmed_skipped.bam
2.90 kB
tardbp-shsy5y-low-20091102-lujt5_trimmed_single.bed.gz
1.07 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_singleAndMulti.bed.gz
2.55 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_single.bedgraph
4.52 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_reads_single.bed.gz
1.27 MB
Paraclu
tardbp-nsc-20100222-lujt3a_trimmed_single_peaks.bed.gz
119.60 kB
iCount RNA-maps
tardbp-shsy5y-low-20091102-lujt5_trimmed_single.tar.gz
529.69 kB
iCount xlsites
tardbp-temporal-cortex-20091102-lujt5_trimmed_single.bed.gz
728.45 kB
tardbp-temporal-cortex-20091102-lujt5_trimmed_singleAndMulti.bed.gz
1.58 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed_single.bedgraph
2.81 MB
tardbp-temporal-cortex-20091102-lujt5_trimmed_reads_single.bed.gz
808.57 kB
tardbp-temporal-cortex-20091102-lujt5_trimmed_skipped.bam
2.90 kB
Paraclu
tardbp-temporal-cortex-20091102-lujt5_trimmed_single_peaks.bed.gz
1.85 kB
iCount xlsites
tardbp-shsy5y-20100222-lujt3_trimmed_skipped.bam
2.90 kB
tardbp-shsy5y-20100222-lujt3_trimmed_singleAndMulti.bed.gz
6.52 MB
tardbp-shsy5y-20100222-lujt3_trimmed_single.bed.gz
3.75 MB
tardbp-shsy5y-20100222-lujt3_trimmed_single.bedgraph
17.07 MB
tardbp-shsy5y-20100222-lujt3_trimmed_reads_single.bed.gz
4.17 MB
Paraclu
tardbp-shsy5y-20100222-lujt3_trimmed_single_peaks.bed.gz
35.47 kB
iCount RNA-maps
tardbp-shsy5y-20100222-lujt3_trimmed_single.tar.gz
743.74 kB
iCount RNA-maps
tardbp-nsc-20100222-lujt3_trimmed_single.tar.gz
1.12 MB
iCount xlsites
tardbp-shsy5y-20100222-lujt3a_trimmed_skipped.bam
3.49 kB
tardbp-shsy5y-20100222-lujt3a_trimmed_single.bed.gz
4.02 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_singleAndMulti.bed.gz
6.89 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_reads_single.bed.gz
4.49 MB
tardbp-shsy5y-20100222-lujt3a_trimmed_single.bedgraph
18.33 MB
iCount xlsites
tardbp-hela-20100222-lujt3a_trimmed_single.bed.gz
494.17 kB
tardbp-hela-20100222-lujt3a_trimmed_singleAndMulti.bed.gz
736.62 kB
tardbp-hela-20100222-lujt3a_trimmed_skipped.bam
2.90 kB
tardbp-hela-20100222-lujt3a_trimmed_reads_single.bed.gz
533.86 kB
tardbp-hela-20100222-lujt3a_trimmed_single.bedgraph
2.02 MB
iCount RNA-maps
tardbp-hela-20100222-lujt3a_trimmed_single.tar.gz
455.80 kB
Paraclu
tardbp-hela-20100222-lujt3a_trimmed_single_peaks.bed.gz
1.15 kB
iCount xlsites
tardbp-nsc-20100222-lujt3a_trimmed_single.bed.gz
9.54 MB
tardbp-nsc-20100222-lujt3a_trimmed_singleAndMulti.bed.gz
14.17 MB
tardbp-nsc-20100222-lujt3a_trimmed_reads_single.bed.gz
10.41 MB
tardbp-nsc-20100222-lujt3a_trimmed_skipped.bam
3.25 kB
tardbp-nsc-20100222-lujt3a_trimmed_single.bedgraph
44.41 MB
iCount summary
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single_summary_type.tsv
421 B
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single_summary_gene.tsv
875.33 kB
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single_summary_subtype.tsv
985 B
Paraclu
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2_trimmed_single_peaks.bed.gz
1.15 kB
Paraclu
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single_peaks.bed.gz
4.16 kB
K-mers
tardbp-temporal-cortex-alzheimer-a11-20090724-lujt2.tar.gz
218.07 kB
iCount summary
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single_summary_type.tsv
434 B
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single_summary_gene.tsv
1.10 MB
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single_summary_subtype.tsv
996 B
K-mers
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2.tar.gz
323.63 kB
iCount RNA-maps
tardbp-temporal-cortex-alzheimer-a12-20090724-lujt2_trimmed_single.tar.gz
575.17 kB
iCount summary
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single_summary_subtype.tsv
993 B
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single_summary_gene.tsv
960.22 kB
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single_summary_type.tsv
425 B
iCount RNA-maps
tardbp-temporal-cortex-ftld-f21-20090724-lujt1_trimmed_single.tar.gz
489.96 kB
iCount summary
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single_summary_type.tsv
425 B
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single_summary_subtype.tsv
992 B
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single_summary_gene.tsv
995.54 kB
Paraclu
tardbp-temporal-cortex-ftld-f24-20090724-lujt2_trimmed_single_peaks.bed.gz
2.41 kB
iCount xlsites
tardbp-shsy5y-total-20101125-lujt8_trimmed_reads_single.bed.gz
1.50 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_skipped.bam
3.12 kB
tardbp-shsy5y-total-20101125-lujt8_trimmed_singleAndMulti.bed.gz
6.13 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_single.bedgraph
5.25 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_single.bed.gz
1.27 MB
Paraclu
tardbp-shsy5y-total-20101125-lujt8_trimmed_single_peaks.bed.gz
7.36 kB
iCount RNA-maps
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single.tar.gz
484.62 kB
K-mers
tardbp-temporal-cortex-c30-20090724-lujt1.tar.gz
344.26 kB
Paraclu
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single_peaks.bed.gz
2.74 kB
iCount summary
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single_summary_type.tsv
428 B
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single_summary_gene.tsv
925.06 kB
tardbp-temporal-cortex-ftld-f20-20090724-lujt1_trimmed_single_summary_subtype.tsv
998 B
K-mers
tardbp-shsy5y-low-20091102-lujt5.tar.gz
337.83 kB
iCount summary
tardbp-shsy5y-low-20091102-lujt5_trimmed_single_summary_subtype.tsv
942 B
tardbp-shsy5y-low-20091102-lujt5_trimmed_single_summary_gene.tsv
1.02 MB
tardbp-shsy5y-low-20091102-lujt5_trimmed_single_summary_type.tsv
434 B
Paraclu
tardbp-shsy5y-low-20091102-lujt5_trimmed_single_peaks.bed.gz
4.97 kB
Paraclu
tardbp-nsc-20100222-lujt3_trimmed_single_peaks.bed.gz
131.23 kB
iCount summary
tardbp-shsy5y-20100222-lujt3a_trimmed_single_summary_subtype.tsv
1007 B
tardbp-shsy5y-20100222-lujt3a_trimmed_single_summary_type.tsv
428 B
tardbp-shsy5y-20100222-lujt3a_trimmed_single_summary_gene.tsv
1.33 MB
K-mers
tardbp-shsy5y-20100222-lujt3a.tar.gz
391.45 kB
iCount summary
tardbp-shsy5y-20100222-lujt3_trimmed_single_summary_type.tsv
431 B
tardbp-shsy5y-20100222-lujt3_trimmed_single_summary_subtype.tsv
1012 B
tardbp-shsy5y-20100222-lujt3_trimmed_single_summary_gene.tsv
1.33 MB
K-mers
tardbp-shsy5y-20100222-lujt3.tar.gz
398.33 kB
iCount RNA-maps
tardbp-nsc-20100222-lujt3a_trimmed_single.tar.gz
1.09 MB
iCount summary
tardbp-shsy5y-total-20101125-lujt8_trimmed_single_summary_gene.tsv
1.15 MB
tardbp-shsy5y-total-20101125-lujt8_trimmed_single_summary_subtype.tsv
1016 B
tardbp-shsy5y-total-20101125-lujt8_trimmed_single_summary_type.tsv
434 B
K-mers
tardbp-temporal-cortex-ftld-f20-20090724-lujt1.tar.gz
291.16 kB
iCount RNA-maps
tardbp-shsy5y-total-20101125-lujt8_trimmed_single.tar.gz
526.76 kB
K-mers
tardbp-temporal-cortex-20091102-lujt5.tar.gz
349.35 kB
K-mers
tardbp-nsc-20100222-lujt3a.tar.gz
449.53 kB