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Folder iconBinding of FUS regulates alternative splicing in brain

Rahul Arora
June 13, 2019
used in sarcoma (FUS) and TAR DNA-binding protein 43 (TDP-43) are RNA-binding proteins pathogenetically linked to amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration (FTLD), but it is not known if they regulate the same transcripts. We addressed this question using crosslinking and immunoprecipitation (iCLIP) in mouse brain, which showed that FUS binds along the whole length of the nascent RNA with limited sequence specificity to GGU and related motifs. A saw-tooth binding pattern in long genes demonstrated that FUS remains bound to pre-mRNAs until splicing is completed. Analysis of FUS−/− brain demonstrated a role for FUS in alternative splicing, with increased crosslinking of FUS in introns around the repressed exons. We did not observe a significant overlap in the RNA binding sites or the exons regulated by FUS and TDP-43. Nevertheless, we found that both proteins regulate genes that function in neuronal development.

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FASTQ file (single-end)
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fus-e18-brain-fus-wt-20110428-lul2_trimmed_single.bed.gz
6.17 MB
fus-e18-brain-fus-wt-20110428-lul2_trimmed_single.bedgraph
27.98 MB
iCount xlsites
u2af2-e18-brain-20090826-lud10-1_trimmed_skipped.bam
1.83 kB
u2af2-e18-brain-20090826-lud10-1_trimmed_single.bed.gz
6.34 MB
u2af2-e18-brain-20090826-lud10-1_trimmed_singleAndMulti.bed.gz
9.42 MB
u2af2-e18-brain-20090826-lud10-1_trimmed_reads_single.bed.gz
6.74 MB
u2af2-e18-brain-20090826-lud10-1_trimmed_single.bedgraph
28.98 MB
iCount xlsites
tardbp-e18-brain-20091102-lujt5_trimmed_reads_single.bed.gz
8.75 MB
tardbp-e18-brain-20091102-lujt5_trimmed_single.bed.gz
7.96 MB
tardbp-e18-brain-20091102-lujt5_trimmed_single.bedgraph
36.65 MB
tardbp-e18-brain-20091102-lujt5_trimmed_singleAndMulti.bed.gz
14.07 MB
tardbp-e18-brain-20091102-lujt5_trimmed_skipped.bam
3.42 kB
iCount summary
fus-e18-brain-20100222-lud12-1_trimmed_single_summary_type.tsv
425 B
fus-e18-brain-20100222-lud12-1_trimmed_single_summary_subtype.tsv
996 B
fus-e18-brain-20100222-lud12-1_trimmed_single_summary_gene.tsv
913.38 kB
iCount summary
fus-e18-brain-20100222-lud12-2_trimmed_single_summary_gene.tsv
1.01 MB
fus-e18-brain-20100222-lud12-2_trimmed_single_summary_type.tsv
427 B
fus-e18-brain-20100222-lud12-2_trimmed_single_summary_subtype.tsv
996 B
iCount summary
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single_summary_type.tsv
416 B
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single_summary_subtype.tsv
974 B
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single_summary_gene.tsv
199.71 kB
iCount summary
tardbp-e18-brain-20100222-lujt3_trimmed_single_summary_subtype.tsv
1019 B
tardbp-e18-brain-20100222-lujt3_trimmed_single_summary_type.tsv
437 B
tardbp-e18-brain-20100222-lujt3_trimmed_single_summary_gene.tsv
1.45 MB
iCount xlsites
u2af2-e18-brain-20090826-lud10_trimmed_skipped.bam
2.28 kB
u2af2-e18-brain-20090826-lud10_trimmed_singleAndMulti.bed.gz
21.33 MB
u2af2-e18-brain-20090826-lud10_trimmed_single.bedgraph
83.59 MB
u2af2-e18-brain-20090826-lud10_trimmed_reads_single.bed.gz
18.60 MB
u2af2-e18-brain-20090826-lud10_trimmed_single.bed.gz
17.72 MB
iCount xlsites
tardbp-e18-brain-20100222-lujt3_trimmed_skipped.bam
2.22 kB
tardbp-e18-brain-20100222-lujt3_trimmed_single.bed.gz
8.67 MB
tardbp-e18-brain-20100222-lujt3_trimmed_singleAndMulti.bed.gz
11.04 MB
tardbp-e18-brain-20100222-lujt3_trimmed_reads_single.bed.gz
9.46 MB
tardbp-e18-brain-20100222-lujt3_trimmed_single.bedgraph
40.55 MB
K-mers
fus-e18-brain-20100222-lud12-2.tar.gz
146.55 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
191.38 MB
demux_nomatch_fastqc.zip
519.61 kB

20100222_LUjt3_SLX-1796.CRIRUN_320.s_6.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
20100222_LUjt3_SLX-1796.CRIRUN_320.s_6.sequence_fastqc.zip
546.56 kB
20100222_LUjt3_SLX-1796.CRIRUN_320.s_6.sequence.fastq.gz
784.73 MB
stderr.txt
1.58 kB

20091102_LUjt5_LUjt5.091012.42RHWAAXX.s_3.fq.gz

FASTQ file (single-end)
fastqc
Directory
20091102_LUjt5_LUjt5.091012.42RHWAAXX.s_3.fastq.gz
701.82 MB
20091102_LUjt5_LUjt5.091012.42RHWAAXX.s_3_fastqc.zip
519.19 kB
stderr.txt
1.46 kB

20090826_LUd10_LUd10.090813.42KW6AAXX.s_5.fq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.46 kB
20090826_LUd10_LUd10.090813.42KW6AAXX.s_5_fastqc.zip
498.71 kB
20090826_LUd10_LUd10.090813.42KW6AAXX.s_5.fastq.gz
600.72 MB

20100222_LUd12_SLX-1797.CRIRUN_320.s_7.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
20100222_LUd12_SLX-1797.CRIRUN_320.s_7.sequence_fastqc.zip
528.30 kB
20100222_LUd12_SLX-1797.CRIRUN_320.s_7.sequence.fastq.gz
299.08 MB
stderr.txt
1.58 kB

20110428_LUl2_SLX-3809.CRIRUN_605.s_3.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
20110428_LUl2_SLX-3809.CRIRUN_605.s_3.sequence_fastqc.zip
527.26 kB
stderr.txt
1.56 kB
20110428_LUl2_SLX-3809.CRIRUN_605.s_3.sequence.fastq.gz
420.92 MB

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch_fastqc.zip
531.11 kB
fastqc
Directory
demux_nomatch.fastq.gz
218.52 MB
stderr.txt
935 B

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
9.29 MB
fastqc
Directory
demux_nomatch_fastqc.zip
523.83 kB
stderr.txt
935 B

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch_fastqc.zip
511.49 kB
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
401.91 MB

FUS_E18_brain_20100222_LUd12_1

FASTQ file (single-end)
stderr.txt
1.36 kB
fastqc
Directory
fus-e18-brain-20100222-lud12-1.fastq.gz
11.81 MB
fus-e18-brain-20100222-lud12-1_fastqc.zip
363.57 kB
Cutadapt (single-end)
fastqc
Directory
fus-e18-brain-20100222-lud12-1_trimmed.fastq.gz
11.78 MB
report.txt
665 B
Paraclu
fus-e18-brain-20100222-lud12-1_trimmed_single_peaks.bed.gz
654 B
iCount RNA-maps
fus-e18-brain-20100222-lud12-1_trimmed_single.tar.gz
526.94 kB
K-mers
fus-e18-brain-20100222-lud12-1.tar.gz
137.88 kB
STAR
fus-e18-brain-20100222-lud12-1_trimmed_unmapped.out.mate1.fastq.gz
1.61 MB
fus-e18-brain-20100222-lud12-1_trimmed.bam.bai
3.05 MB
fus-e18-brain-20100222-lud12-1_trimmed.bam
19.07 MB
fus-e18-brain-20100222-lud12-1_trimmed_stats.txt
1.79 kB
fus-e18-brain-20100222-lud12-1_trimmed_SJ.out.tab
33.12 kB
fus-e18-brain-20100222-lud12-1_trimmed.bw
6.84 kB
iCount xlsites
fus-e18-brain-20100222-lud12-1_trimmed_skipped.bam
1.38 kB
fus-e18-brain-20100222-lud12-1_trimmed_reads_single.bed.gz
1.08 MB
fus-e18-brain-20100222-lud12-1_trimmed_single.bed.gz
1.00 MB
fus-e18-brain-20100222-lud12-1_trimmed_single.bedgraph
4.27 MB
fus-e18-brain-20100222-lud12-1_trimmed_singleAndMulti.bed.gz
1.56 MB
iCount summary
fus-e18-brain-20100222-lud12-1_trimmed_single_summary_type.tsv
425 B
fus-e18-brain-20100222-lud12-1_trimmed_single_summary_subtype.tsv
996 B
fus-e18-brain-20100222-lud12-1_trimmed_single_summary_gene.tsv
913.38 kB

FUS_E18_brain_20100222_LUd12_2

Paraclu
fus-e18-brain-20100222-lud12-2_trimmed_single_peaks.bed.gz
937 B
FASTQ file (single-end)
fastqc
Directory
fus-e18-brain-20100222-lud12-2.fastq.gz
17.38 MB
fus-e18-brain-20100222-lud12-2_fastqc.zip
390.79 kB
stderr.txt
1.36 kB
iCount RNA-maps
fus-e18-brain-20100222-lud12-2_trimmed_single.tar.gz
598.34 kB
Cutadapt (single-end)
fastqc
Directory
fus-e18-brain-20100222-lud12-2_trimmed.fastq.gz
17.59 MB
report.txt
665 B
STAR
fus-e18-brain-20100222-lud12-2_trimmed_unmapped.out.mate1.fastq.gz
1.58 MB
fus-e18-brain-20100222-lud12-2_trimmed.bam
27.89 MB
fus-e18-brain-20100222-lud12-2_trimmed.bam.bai
2.79 MB
fus-e18-brain-20100222-lud12-2_trimmed_stats.txt
1.79 kB
fus-e18-brain-20100222-lud12-2_trimmed.bw
7.63 kB
fus-e18-brain-20100222-lud12-2_trimmed_SJ.out.tab
49.77 kB
iCount xlsites
fus-e18-brain-20100222-lud12-2_trimmed_skipped.bam
1.58 kB
fus-e18-brain-20100222-lud12-2_trimmed_singleAndMulti.bed.gz
1.90 MB
fus-e18-brain-20100222-lud12-2_trimmed_single.bedgraph
6.65 MB
fus-e18-brain-20100222-lud12-2_trimmed_single.bed.gz
1.52 MB
fus-e18-brain-20100222-lud12-2_trimmed_reads_single.bed.gz
1.64 MB
iCount summary
fus-e18-brain-20100222-lud12-2_trimmed_single_summary_gene.tsv
1.01 MB
fus-e18-brain-20100222-lud12-2_trimmed_single_summary_type.tsv
427 B
fus-e18-brain-20100222-lud12-2_trimmed_single_summary_subtype.tsv
996 B
K-mers
fus-e18-brain-20100222-lud12-2.tar.gz
146.55 kB

FUS_E18_brain_FUS_KO_20110428_LUl2

FASTQ file (single-end)
fus-e18-brain-fus-ko-20110428-lul2.fastq.gz
141.02 MB
fastqc
Directory
stderr.txt
1.32 kB
fus-e18-brain-fus-ko-20110428-lul2_fastqc.zip
360.67 kB
K-mers
fus-e18-brain-fus-ko-20110428-lul2.tar.gz
355.81 kB
iCount summary
fus-e18-brain-fus-ko-20110428-lul2_trimmed_single_summary_subtype.tsv
1008 B
fus-e18-brain-fus-ko-20110428-lul2_trimmed_single_summary_type.tsv
433 B
fus-e18-brain-fus-ko-20110428-lul2_trimmed_single_summary_gene.tsv
1.04 MB
Paraclu
fus-e18-brain-fus-ko-20110428-lul2_trimmed_single_peaks.bed.gz
1.65 kB
iCount RNA-maps
fus-e18-brain-fus-ko-20110428-lul2_trimmed_single.tar.gz
602.78 kB
Cutadapt (single-end)
fastqc
Directory
fus-e18-brain-fus-ko-20110428-lul2_trimmed.fastq.gz
132.19 MB
report.txt
671 B
STAR
fus-e18-brain-fus-ko-20110428-lul2_trimmed_unmapped.out.mate1.fastq.gz
13.93 MB
fus-e18-brain-fus-ko-20110428-lul2_trimmed.bam.bai
3.11 MB
fus-e18-brain-fus-ko-20110428-lul2_trimmed.bam
138.98 MB
fus-e18-brain-fus-ko-20110428-lul2_trimmed_stats.txt
1.80 kB
fus-e18-brain-fus-ko-20110428-lul2_trimmed_SJ.out.tab
81.98 kB
fus-e18-brain-fus-ko-20110428-lul2_trimmed.bw
8.89 kB
iCount xlsites
fus-e18-brain-fus-ko-20110428-lul2_trimmed_single.bed.gz
1.09 MB
fus-e18-brain-fus-ko-20110428-lul2_trimmed_skipped.bam
1.77 kB
fus-e18-brain-fus-ko-20110428-lul2_trimmed_single.bedgraph
4.52 MB
fus-e18-brain-fus-ko-20110428-lul2_trimmed_singleAndMulti.bed.gz
1.84 MB
fus-e18-brain-fus-ko-20110428-lul2_trimmed_reads_single.bed.gz
1.31 MB

U2AF2_E18_brain_20090826_LUd10

FASTQ file (single-end)
fastqc
Directory
u2af2-e18-brain-20090826-lud10.fastq.gz
229.60 MB
stderr.txt
1.36 kB
u2af2-e18-brain-20090826-lud10_fastqc.zip
349.14 kB
iCount summary
u2af2-e18-brain-20090826-lud10_trimmed_single_summary_type.tsv
437 B
u2af2-e18-brain-20090826-lud10_trimmed_single_summary_subtype.tsv
1.00 kB
u2af2-e18-brain-20090826-lud10_trimmed_single_summary_gene.tsv
1.77 MB
iCount RNA-maps
u2af2-e18-brain-20090826-lud10_trimmed_single.tar.gz
2.75 MB
Paraclu
u2af2-e18-brain-20090826-lud10_trimmed_single_peaks.bed.gz
141.61 kB
K-mers
u2af2-e18-brain-20090826-lud10.tar.gz
456.87 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
u2af2-e18-brain-20090826-lud10_trimmed.fastq.gz
229.42 MB
STAR
u2af2-e18-brain-20090826-lud10_trimmed_unmapped.out.mate1.fastq.gz
18.80 MB
u2af2-e18-brain-20090826-lud10_trimmed.bam
327.59 MB
u2af2-e18-brain-20090826-lud10_trimmed_stats.txt
1.80 kB
u2af2-e18-brain-20090826-lud10_trimmed.bam.bai
3.50 MB
u2af2-e18-brain-20090826-lud10_trimmed_SJ.out.tab
1.02 MB
iCount xlsites
u2af2-e18-brain-20090826-lud10_trimmed_skipped.bam
2.28 kB
u2af2-e18-brain-20090826-lud10_trimmed_singleAndMulti.bed.gz
21.33 MB
u2af2-e18-brain-20090826-lud10_trimmed_single.bedgraph
83.59 MB
u2af2-e18-brain-20090826-lud10_trimmed_reads_single.bed.gz
18.60 MB
u2af2-e18-brain-20090826-lud10_trimmed_single.bed.gz
17.72 MB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
497.43 MB
demux_nomatch_fastqc.zip
554.27 kB
stderr.txt
935 B

TARDBP_E18_brain_20091102_LUjt5

K-mers
tardbp-e18-brain-20091102-lujt5.tar.gz
465.42 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.38 kB
tardbp-e18-brain-20091102-lujt5.fastq.gz
185.94 MB
tardbp-e18-brain-20091102-lujt5_fastqc.zip
364.89 kB
iCount summary
tardbp-e18-brain-20091102-lujt5_trimmed_single_summary_type.tsv
440 B
tardbp-e18-brain-20091102-lujt5_trimmed_single_summary_subtype.tsv
1.00 kB
tardbp-e18-brain-20091102-lujt5_trimmed_single_summary_gene.tsv
1.75 MB
Paraclu
tardbp-e18-brain-20091102-lujt5_trimmed_single_peaks.bed.gz
154.43 kB
iCount RNA-maps
tardbp-e18-brain-20091102-lujt5_trimmed_single.tar.gz
1.11 MB
Cutadapt (single-end)
tardbp-e18-brain-20091102-lujt5_trimmed.fastq.gz
171.07 MB
fastqc
Directory
report.txt
668 B
STAR
tardbp-e18-brain-20091102-lujt5_trimmed.bam
286.45 MB
tardbp-e18-brain-20091102-lujt5_trimmed_unmapped.out.mate1.fastq.gz
26.12 MB
tardbp-e18-brain-20091102-lujt5_trimmed.bam.bai
3.06 MB
tardbp-e18-brain-20091102-lujt5_trimmed_stats.txt
1.80 kB
tardbp-e18-brain-20091102-lujt5_trimmed_SJ.out.tab
607.10 kB
iCount xlsites
tardbp-e18-brain-20091102-lujt5_trimmed_reads_single.bed.gz
8.75 MB
tardbp-e18-brain-20091102-lujt5_trimmed_single.bed.gz
7.96 MB
tardbp-e18-brain-20091102-lujt5_trimmed_single.bedgraph
36.65 MB
tardbp-e18-brain-20091102-lujt5_trimmed_singleAndMulti.bed.gz
14.07 MB
tardbp-e18-brain-20091102-lujt5_trimmed_skipped.bam
3.42 kB

FUS_E18_brain_20100222_LUd12

Paraclu
fus-e18-brain-20100222-lud12_trimmed_single_peaks.bed.gz
409 B
FASTQ file (single-end)
fastqc
Directory
fus-e18-brain-20100222-lud12.fastq.gz
6.18 MB
fus-e18-brain-20100222-lud12_fastqc.zip
368.33 kB
stderr.txt
1.32 kB
iCount summary
fus-e18-brain-20100222-lud12_trimmed_single_summary_type.tsv
418 B
fus-e18-brain-20100222-lud12_trimmed_single_summary_gene.tsv
737.73 kB
fus-e18-brain-20100222-lud12_trimmed_single_summary_subtype.tsv
858 B
iCount RNA-maps
fus-e18-brain-20100222-lud12_trimmed_single.tar.gz
452.98 kB
K-mers
fus-e18-brain-20100222-lud12.tar.gz
127.82 kB
Cutadapt (single-end)
fastqc
Directory
fus-e18-brain-20100222-lud12_trimmed.fastq.gz
6.23 MB
report.txt
663 B
STAR
fus-e18-brain-20100222-lud12_trimmed_unmapped.out.mate1.fastq.gz
841.76 kB
fus-e18-brain-20100222-lud12_trimmed.bam.bai
2.41 MB
fus-e18-brain-20100222-lud12_trimmed_stats.txt
1.79 kB
fus-e18-brain-20100222-lud12_trimmed.bam
9.89 MB
fus-e18-brain-20100222-lud12_trimmed.bw
5.77 kB
fus-e18-brain-20100222-lud12_trimmed_SJ.out.tab
16.06 kB
iCount xlsites
fus-e18-brain-20100222-lud12_trimmed_single.bed.gz
573.80 kB
fus-e18-brain-20100222-lud12_trimmed_single.bedgraph
2.33 MB
fus-e18-brain-20100222-lud12_trimmed_reads_single.bed.gz
615.63 kB
fus-e18-brain-20100222-lud12_trimmed_skipped.bam
1.38 kB
fus-e18-brain-20100222-lud12_trimmed_singleAndMulti.bed.gz
792.05 kB

FUS_E18_brain_FUS_WT_20110428_LUl2

K-mers
fus-e18-brain-fus-wt-20110428-lul2.tar.gz
361.37 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.32 kB
fus-e18-brain-fus-wt-20110428-lul2.fastq.gz
166.22 MB
fus-e18-brain-fus-wt-20110428-lul2_fastqc.zip
341.71 kB
iCount summary
fus-e18-brain-fus-wt-20110428-lul2_trimmed_single_summary_subtype.tsv
1019 B
fus-e18-brain-fus-wt-20110428-lul2_trimmed_single_summary_type.tsv
437 B
fus-e18-brain-fus-wt-20110428-lul2_trimmed_single_summary_gene.tsv
1.43 MB
iCount RNA-maps
fus-e18-brain-fus-wt-20110428-lul2_trimmed_single.tar.gz
988.79 kB
Paraclu
fus-e18-brain-fus-wt-20110428-lul2_trimmed_single_peaks.bed.gz
2.81 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
fus-e18-brain-fus-wt-20110428-lul2_trimmed.fastq.gz
165.94 MB
STAR
fus-e18-brain-fus-wt-20110428-lul2_trimmed.bam.bai
3.64 MB
fus-e18-brain-fus-wt-20110428-lul2_trimmed_stats.txt
1.80 kB
fus-e18-brain-fus-wt-20110428-lul2_trimmed_unmapped.out.mate1.fastq.gz
13.28 MB
fus-e18-brain-fus-wt-20110428-lul2_trimmed.bw
17.77 kB
fus-e18-brain-fus-wt-20110428-lul2_trimmed_SJ.out.tab
160.65 kB
fus-e18-brain-fus-wt-20110428-lul2_trimmed.bam
190.69 MB
iCount xlsites
fus-e18-brain-fus-wt-20110428-lul2_trimmed_skipped.bam
2.77 kB
fus-e18-brain-fus-wt-20110428-lul2_trimmed_singleAndMulti.bed.gz
7.82 MB
fus-e18-brain-fus-wt-20110428-lul2_trimmed_reads_single.bed.gz
7.03 MB
fus-e18-brain-fus-wt-20110428-lul2_trimmed_single.bed.gz
6.17 MB
fus-e18-brain-fus-wt-20110428-lul2_trimmed_single.bedgraph
27.98 MB

FUS_E18_brain_FUS_KO_pA_beads_20110428_LUl2

FASTQ file (single-end)
fastqc
Directory
fus-e18-brain-fus-ko-pa-beads-20110428-lul2.fastq.gz
16.56 MB
stderr.txt
1.58 kB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_fastqc.zip
386.39 kB
K-mers
fus-e18-brain-fus-ko-pa-beads-20110428-lul2.tar.gz
125.90 kB
Paraclu
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single_peaks.bed.gz
240 B
iCount RNA-maps
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single.tar.gz
376.60 kB
Cutadapt (single-end)
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed.fastq.gz
10.24 MB
report.txt
679 B
fastqc
Directory
STAR
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed.bam.bai
1.49 MB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_unmapped.out.mate1.fastq.gz
1.31 MB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed.bam
10.78 MB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_stats.txt
1.79 kB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed.bw
4.53 kB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_SJ.out.tab
3.71 kB
iCount xlsites
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_singleAndMulti.bed.gz
103.13 kB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single.bed.gz
41.84 kB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_skipped.bam
1.38 kB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single.bedgraph
144.32 kB
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_reads_single.bed.gz
48.87 kB
iCount summary
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single_summary_type.tsv
416 B
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single_summary_subtype.tsv
974 B
fus-e18-brain-fus-ko-pa-beads-20110428-lul2_trimmed_single_summary_gene.tsv
199.71 kB

U2AF2_E18_brain_20090826_LUd10_1

Paraclu
u2af2-e18-brain-20090826-lud10-1_trimmed_single_peaks.bed.gz
18.66 kB
FASTQ file (single-end)
fastqc
Directory
u2af2-e18-brain-20090826-lud10-1.fastq.gz
88.19 MB
stderr.txt
1.40 kB
u2af2-e18-brain-20090826-lud10-1_fastqc.zip
361.86 kB
Cutadapt (single-end)
fastqc
Directory
u2af2-e18-brain-20090826-lud10-1_trimmed.fastq.gz
87.18 MB
report.txt
667 B
iCount summary
u2af2-e18-brain-20090826-lud10-1_trimmed_single_summary_type.tsv
430 B
u2af2-e18-brain-20090826-lud10-1_trimmed_single_summary_subtype.tsv
1010 B
u2af2-e18-brain-20090826-lud10-1_trimmed_single_summary_gene.tsv
1.53 MB
iCount RNA-maps
u2af2-e18-brain-20090826-lud10-1_trimmed_single.tar.gz
1.50 MB
K-mers
u2af2-e18-brain-20090826-lud10-1.tar.gz
375.31 kB
STAR
u2af2-e18-brain-20090826-lud10-1_trimmed_unmapped.out.mate1.fastq.gz
11.87 MB
u2af2-e18-brain-20090826-lud10-1_trimmed.bam.bai
3.94 MB
u2af2-e18-brain-20090826-lud10-1_trimmed.bam
138.80 MB
u2af2-e18-brain-20090826-lud10-1_trimmed.bw
18.55 kB
u2af2-e18-brain-20090826-lud10-1_trimmed_SJ.out.tab
286.86 kB
u2af2-e18-brain-20090826-lud10-1_trimmed_stats.txt
1.80 kB
iCount xlsites
u2af2-e18-brain-20090826-lud10-1_trimmed_skipped.bam
1.83 kB
u2af2-e18-brain-20090826-lud10-1_trimmed_single.bed.gz
6.34 MB
u2af2-e18-brain-20090826-lud10-1_trimmed_singleAndMulti.bed.gz
9.42 MB
u2af2-e18-brain-20090826-lud10-1_trimmed_reads_single.bed.gz
6.74 MB
u2af2-e18-brain-20090826-lud10-1_trimmed_single.bedgraph
28.98 MB

TARDBP_E18_brain_20100222_LUjt3

Cutadapt (single-end)
report.txt
668 B
fastqc
Directory
tardbp-e18-brain-20100222-lujt3_trimmed.fastq.gz
190.71 MB
Paraclu
tardbp-e18-brain-20100222-lujt3_trimmed_single_peaks.bed.gz
89.92 kB
FASTQ file (single-end)
fastqc
Directory
tardbp-e18-brain-20100222-lujt3.fastq.gz
198.29 MB
tardbp-e18-brain-20100222-lujt3_fastqc.zip
372.05 kB
stderr.txt
1.38 kB
K-mers
tardbp-e18-brain-20100222-lujt3.tar.gz
411.93 kB
iCount RNA-maps
tardbp-e18-brain-20100222-lujt3_trimmed_single.tar.gz
986.24 kB
STAR
tardbp-e18-brain-20100222-lujt3_trimmed_unmapped.out.mate1.fastq.gz
12.74 MB
tardbp-e18-brain-20100222-lujt3_trimmed.bam.bai
3.67 MB
tardbp-e18-brain-20100222-lujt3_trimmed.bam
237.61 MB
tardbp-e18-brain-20100222-lujt3_trimmed_SJ.out.tab
232.58 kB
tardbp-e18-brain-20100222-lujt3_trimmed_stats.txt
1.80 kB
tardbp-e18-brain-20100222-lujt3_trimmed.bw
19.02 kB
iCount summary
tardbp-e18-brain-20100222-lujt3_trimmed_single_summary_subtype.tsv
1019 B
tardbp-e18-brain-20100222-lujt3_trimmed_single_summary_type.tsv
437 B
tardbp-e18-brain-20100222-lujt3_trimmed_single_summary_gene.tsv
1.45 MB
iCount xlsites
tardbp-e18-brain-20100222-lujt3_trimmed_skipped.bam
2.22 kB
tardbp-e18-brain-20100222-lujt3_trimmed_single.bed.gz
8.67 MB
tardbp-e18-brain-20100222-lujt3_trimmed_singleAndMulti.bed.gz
11.04 MB
tardbp-e18-brain-20100222-lujt3_trimmed_reads_single.bed.gz
9.46 MB
tardbp-e18-brain-20100222-lujt3_trimmed_single.bedgraph
40.55 MB