Back to Archive

Folder iconCompetition between hnRNP C and U2AF6 and uncontrolled exonization

Rahul Arora
June 13, 2019
There are ∼650,000 Alu elements in transcribed regions of the human genome. These elements contain cryptic splice sites, so they are in constant danger of aberrant incorporation into mature transcripts. Despite posing a major threat to transcriptome integrity, little is known about the molecular mechanisms preventing their inclusion. Here, we present a mechanism for protecting the human transcriptome from the aberrant exonization of transposable elements. Quantitative iCLIP data show that the RNA-binding protein hnRNP C competes with the splicing factor U2AF65 at many genuine and cryptic splice sites. Loss of hnRNP C leads to formation of previously suppressed Alu exons, which severely disrupt transcript function. Minigene experiments explain disease-associated mutations in Alu elements that hamper hnRNP C binding. Thus, by preventing U2AF65 binding to Alu elements, hnRNP C plays a critical role as a genome-wide sentinel protecting the transcriptome. The findings have important implications for human evolution and disease.

No Sample

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.60 kB
20110307_LUjh25_SLX-3272.CRIRUN_560.s_6.sequence.fastq.gz
949.59 MB
20110307_LUjh25_SLX-3272.CRIRUN_560.s_6.sequence_fastqc.zip
510.67 kB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed.fastq.gz
142.79 MB
K-mers
hnrnpc-hela-4h-20101116-lujh03-2.tar.gz
229.35 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
481.17 kB
demux_nomatch.fastq.gz
99.83 MB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25-5.fastq.gz
94.78 MB
stderr.txt
1.23 kB
hnrnpc-hela-20110307-lujh25-5_fastqc.zip
337.64 kB
K-mers
hnrnpc-hela-20110307-lujh25-7.tar.gz
491.37 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
273 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
272 B
Paraclu
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single_peaks.bed.gz
559 B
FASTQ file (single-end)
fastqc
Directory
u2af2-hela-kdhc2u4-20110223-lujh22.fastq.gz
357.73 MB
stderr.txt
1.39 kB
u2af2-hela-kdhc2u4-20110223-lujh22_fastqc.zip
332.79 kB
FASTQ file (single-end)
u2af2-hela-ctru7-20110223-lujh23.fastq.gz
490.46 MB
fastqc
Directory
stderr.txt
1.28 kB
u2af2-hela-ctru7-20110223-lujh23_fastqc.zip
341.17 kB
K-mers
hnrnpc-hela-20110307-lujh25-6.tar.gz
328.84 kB
K-mers
u2af2-hela-kdhc1u2-20110223-lujh21.tar.gz
491.76 kB
Paraclu
hnrnpc-hela-20110307-lujh25-4_trimmed_single_peaks.bed.gz
1.70 kB
K-mers
hnrnpc-hela-20110307-lujh25-4.tar.gz
328.39 kB
iCount xlsites
hnrnpc-hela-20110307-lujh25-1_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-1_trimmed_singleAndMulti.bed.gz
1.24 MB
hnrnpc-hela-20110307-lujh25-1_trimmed_single.bed.gz
698.66 kB
hnrnpc-hela-20110307-lujh25-1_trimmed_reads_single.bed.gz
799.42 kB
hnrnpc-hela-20110307-lujh25-1_trimmed_single.bedgraph
2.89 MB
iCount summary
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single_summary_type.tsv
440 B
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single_summary_gene.tsv
1.70 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single.tar.gz
490.49 kB
iCount summary
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single_summary_type.tsv
431 B
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single_summary_subtype.tsv
1012 B
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single_summary_gene.tsv
1.35 MB
Paraclu
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single_peaks.bed.gz
10.28 kB
iCount summary
u2af2-hela-noabu1-20110223-lujh22_trimmed_single_summary_type.tsv
405 B
u2af2-hela-noabu1-20110223-lujh22_trimmed_single_summary_subtype.tsv
639 B
u2af2-hela-noabu1-20110223-lujh22_trimmed_single_summary_gene.tsv
186.48 kB
iCount summary
hnrnpc-hela-4h-20101116-lujh03_trimmed_single_summary_subtype.tsv
1022 B
hnrnpc-hela-4h-20101116-lujh03_trimmed_single_summary_gene.tsv
1.54 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_single_summary_type.tsv
438 B
Paraclu
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single_peaks.bed.gz
41.39 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-5_trimmed_single.tar.gz
889.78 kB
iCount summary
hnrnpc-hela-20110307-lujh25-3_trimmed_single_summary_subtype.tsv
1019 B
hnrnpc-hela-20110307-lujh25-3_trimmed_single_summary_gene.tsv
1.43 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_single_summary_type.tsv
438 B
iCount summary
hnrnpc-hela-20110307-lujh25_trimmed_single_summary_subtype.tsv
936 B
hnrnpc-hela-20110307-lujh25_trimmed_single_summary_type.tsv
430 B
hnrnpc-hela-20110307-lujh25_trimmed_single_summary_gene.tsv
1022.06 kB
Paraclu
hnrnpc-hela-20110307-lujh25_trimmed_single_peaks.bed.gz
1.24 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
34.09 MB
fastqc
Directory
demux_nomatch_fastqc.zip
460.82 kB
stderr.txt
935 B
iCount RNA-maps
u2af2-hela-ctru6-20110223-lujh23_trimmed_single.tar.gz
2.05 MB
K-mers
u2af2-hela-ctru6-20110223-lujh23.tar.gz
453.53 kB
iCount summary
hnrnpc-hela-20110307-lujh25-2_trimmed_single_summary_subtype.tsv
936 B
hnrnpc-hela-20110307-lujh25-2_trimmed_single_summary_type.tsv
426 B
hnrnpc-hela-20110307-lujh25-2_trimmed_single_summary_gene.tsv
915.33 kB
iCount RNA-maps
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single.tar.gz
3.04 MB
iCount RNA-maps
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single.tar.gz
822.10 kB
Paraclu
hnrnpc-hela-20110307-lujh25-5_trimmed_single_peaks.bed.gz
13.63 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-6_trimmed_single.tar.gz
600.26 kB
iCount summary
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single_summary_type.tsv
428 B
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single_summary_subtype.tsv
872 B
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single_summary_gene.tsv
872.61 kB
iCount summary
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single_summary_type.tsv
438 B
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single_summary_gene.tsv
1.83 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
u2af2-hela-noabu1-20110223-lujh22_trimmed_single.tar.gz
315.66 kB
iCount summary
u2af2-hela-ctru6-20110223-lujh23_trimmed_single_summary_type.tsv
441 B
u2af2-hela-ctru6-20110223-lujh23_trimmed_single_summary_subtype.tsv
1023 B
u2af2-hela-ctru6-20110223-lujh23_trimmed_single_summary_gene.tsv
1.44 MB
iCount summary
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single_summary_type.tsv
438 B
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single_summary_gene.tsv
1.59 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single_summary_subtype.tsv
1.00 kB
iCount summary
hnrnpc-hela-20110307-lujh25-6_trimmed_single_summary_type.tsv
429 B
hnrnpc-hela-20110307-lujh25-6_trimmed_single_summary_gene.tsv
1.01 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_single_summary_subtype.tsv
1001 B
iCount RNA-maps
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single.tar.gz
3.88 MB
Paraclu
hnrnpc-hela-20110307-lujh25-6_trimmed_single_peaks.bed.gz
1.43 kB
iCount summary
hnrnpc-hela-20110307-lujh25-5_trimmed_single_summary_type.tsv
436 B
hnrnpc-hela-20110307-lujh25-5_trimmed_single_summary_subtype.tsv
1012 B
hnrnpc-hela-20110307-lujh25-5_trimmed_single_summary_gene.tsv
1.28 MB
iCount summary
hnrnpc-hela-20110307-lujh25-4_trimmed_single_summary_subtype.tsv
937 B
hnrnpc-hela-20110307-lujh25-4_trimmed_single_summary_type.tsv
426 B
hnrnpc-hela-20110307-lujh25-4_trimmed_single_summary_gene.tsv
1.03 MB
iCount RNA-maps
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single.tar.gz
1.02 MB
iCount summary
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single_summary_type.tsv
442 B
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single_summary_subtype.tsv
1.01 kB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single_summary_gene.tsv
1.99 MB
Paraclu
hnrnpc-hela-20110307-lujh25-3_trimmed_single_peaks.bed.gz
36.27 kB
iCount summary
hnrnpc-hela-20110307-lujh25-1_trimmed_single_summary_type.tsv
426 B
hnrnpc-hela-20110307-lujh25-1_trimmed_single_summary_subtype.tsv
867 B
hnrnpc-hela-20110307-lujh25-1_trimmed_single_summary_gene.tsv
804.92 kB
Paraclu
hnrnpc-hela-20110307-lujh25-1_trimmed_single_peaks.bed.gz
392 B
K-mers
hnrnpc-hela-20110307-lujh25-2.tar.gz
248.62 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-2_trimmed_single.tar.gz
514.45 kB
iCount summary
u2af2-hela-ctru7-20110223-lujh23_trimmed_single_summary_type.tsv
443 B
u2af2-hela-ctru7-20110223-lujh23_trimmed_single_summary_gene.tsv
2.19 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_single_summary_subtype.tsv
1.01 kB
iCount summary
hnrnpc-hela-20110307-lujh25-7_trimmed_single_summary_subtype.tsv
1.00 kB
hnrnpc-hela-20110307-lujh25-7_trimmed_single_summary_type.tsv
440 B
hnrnpc-hela-20110307-lujh25-7_trimmed_single_summary_gene.tsv
1.73 MB
Paraclu
hnrnpc-hela-20110307-lujh25-7_trimmed_single_peaks.bed.gz
239.80 kB
Upload iCount sample annotation
HNRNPC_20101116_LUjh03_annotation_sheet.tab.gz
937 B
HNRNPC_20101116_LUjh03_annotation_sheet.xlsx
14.55 kB
Upload iCount sample annotation
U2AF2_20110223_LUjh21_annotation_sheet.tab.gz
911 B
U2AF2_20110223_LUjh21_annotation_sheet.xlsx
14.35 kB
FASTQ file (single-end)
stderr.txt
1.60 kB
fastqc
Directory
20110223_LUjh22_SLX-3262.CRIRUN_555.s_4.sequence.fastq.gz
456.60 MB
20110223_LUjh22_SLX-3262.CRIRUN_555.s_4.sequence_fastqc.zip
507.00 kB
Upload iCount sample annotation
U2AF2_20110223_LUjh22_annotation_sheet.tab.gz
926 B
U2AF2_20110223_LUjh22_annotation_sheet.xlsx
14.33 kB
Upload iCount sample annotation
U2AF2_20110223_LUjh23_annotation_sheet.xlsx
14.29 kB
U2AF2_20110223_LUjh23_annotation_sheet.tab.gz
911 B
Upload iCount sample annotation
HNRNPC_20110307_LUjh25_annotation_sheet.xlsx
14.91 kB
HNRNPC_20110307_LUjh25_annotation_sheet.tab.gz
999 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.60 kB
20101116_LUjh03_SLX-2605.CRIRUN_501.s_4.sequence_fastqc.zip
517.92 kB
20101116_LUjh03_SLX-2605.CRIRUN_501.s_4.sequence.fastq.gz
868.59 MB
FASTQ file (single-end)
fastqc
Directory
20110223_LUjh21_SLX-3261.CRIRUN_555.s_3.sequence.fastq.gz
442.33 MB
20110223_LUjh21_SLX-3261.CRIRUN_555.s_3.sequence_fastqc.zip
485.61 kB
stderr.txt
1.60 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
269 B
FASTQ file (single-end)
fastqc
Directory
20110223_LUjh23_SLX-3263.CRIRUN_555.s_5.sequence_fastqc.zip
505.01 kB
20110223_LUjh23_SLX-3263.CRIRUN_555.s_5.sequence.fastq.gz
807.98 MB
stderr.txt
1.60 kB
Paraclu
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single_peaks.bed.gz
318.65 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
383 B
FASTQ file (single-end)
u2af2-hela-kdhc1u2-20110223-lujh21.fastq.gz
139.36 MB
stderr.txt
1.32 kB
fastqc
Directory
u2af2-hela-kdhc1u2-20110223-lujh21_fastqc.zip
333.73 kB
FASTQ file (single-end)
u2af2-hela-kdhc1u3-20110223-lujh21.fastq.gz
190.79 MB
stderr.txt
1.32 kB
fastqc
Directory
u2af2-hela-kdhc1u3-20110223-lujh21_fastqc.zip
330.88 kB
FASTQ file (single-end)
fastqc
Directory
u2af2-hela-noabu1-20110223-lujh22.fastq.gz
176.05 kB
stderr.txt
398 B
u2af2-hela-noabu1-20110223-lujh22_fastqc.zip
330.31 kB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch_fastqc.zip
483.31 kB
stderr.txt
983 B
demux_nomatch.fastq.gz
18.11 MB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
586 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
475.09 kB
demux_nomatch.fastq.gz
70.53 MB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25-6.fastq.gz
58.97 MB
hnrnpc-hela-20110307-lujh25-6_fastqc.zip
330.53 kB
stderr.txt
1.23 kB
Paraclu
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single_peaks.bed.gz
524.10 kB
iCount RNA-maps
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single.tar.gz
2.67 MB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-3_fastqc.zip
350.22 kB
stderr.txt
1.28 kB
hnrnpc-hela-4h-20101116-lujh03-3.fastq.gz
297.52 MB
Paraclu
u2af2-hela-noabu1-20110223-lujh22_trimmed_single_peaks.bed.gz
111 B
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-2.fastq.gz
24.66 MB
stderr.txt
1.28 kB
hnrnpc-hela-4h-20101116-lujh03-2_fastqc.zip
342.68 kB
iCount RNA-maps
hnrnpc-hela-4h-20101116-lujh03_trimmed_single.tar.gz
1.02 MB
FASTQ file (single-end)
hnrnpc-hela-4h-20101116-lujh03-1.fastq.gz
104.32 MB
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-1_fastqc.zip
349.18 kB
stderr.txt
1.28 kB
K-mers
hnrnpc-hela-4h-20101116-lujh03.tar.gz
415.53 kB
K-mers
hnrnpc-hela-4h-20101116-lujh03-1.tar.gz
377.15 kB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03.fastq.gz
177.53 MB
hnrnpc-hela-4h-20101116-lujh03_fastqc.zip
351.54 kB
stderr.txt
1.25 kB
Paraclu
hnrnpc-hela-4h-20101116-lujh03_trimmed_single_peaks.bed.gz
33.89 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
hnrnpc-hela-4h-20101116-lujh03-3_trimmed.fastq.gz
299.07 MB
K-mers
hnrnpc-hela-4h-20101116-lujh03-3.tar.gz
430.44 kB
K-mers
u2af2-hela-noabu1-20110223-lujh22.tar.gz
135 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.28 kB
u2af2-hela-ctru6-20110223-lujh23.fastq.gz
81.47 MB
u2af2-hela-ctru6-20110223-lujh23_fastqc.zip
347.05 kB
K-mers
u2af2-hela-kdhc2u4-20110223-lujh22.tar.gz
551.98 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
76.95 MB
demux_nomatch_fastqc.zip
463.46 kB
Paraclu
u2af2-hela-ctru6-20110223-lujh23_trimmed_single_peaks.bed.gz
150.78 kB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25.fastq.gz
63.58 MB
stderr.txt
1.19 kB
hnrnpc-hela-20110307-lujh25_fastqc.zip
326.25 kB
Paraclu
u2af2-hela-ctru7-20110223-lujh23_trimmed_single_peaks.bed.gz
1.41 MB
iCount RNA-maps
u2af2-hela-ctru7-20110223-lujh23_trimmed_single.tar.gz
4.32 MB
FASTQ file (single-end)
hnrnpc-hela-20110307-lujh25-4.fastq.gz
49.75 MB
fastqc
Directory
hnrnpc-hela-20110307-lujh25-4_fastqc.zip
334.20 kB
stderr.txt
1.23 kB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25-3.fastq.gz
127.64 MB
hnrnpc-hela-20110307-lujh25-3_fastqc.zip
338.60 kB
stderr.txt
1.23 kB
FASTQ file (single-end)
stderr.txt
1.23 kB
fastqc
Directory
hnrnpc-hela-20110307-lujh25-7.fastq.gz
262.06 MB
hnrnpc-hela-20110307-lujh25-7_fastqc.zip
333.88 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-4_trimmed_single.tar.gz
590.38 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-7_trimmed_single.tar.gz
1.61 MB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-3_trimmed_single.tar.gz
1.10 MB
FASTQ file (single-end)
hnrnpc-hela-20110307-lujh25-2.fastq.gz
39.61 MB
fastqc
Directory
stderr.txt
1.23 kB
hnrnpc-hela-20110307-lujh25-2_fastqc.zip
335.54 kB
Paraclu
hnrnpc-hela-20110307-lujh25-2_trimmed_single_peaks.bed.gz
677 B
FASTQ file (single-end)
hnrnpc-hela-20110307-lujh25-1.fastq.gz
18.88 MB
fastqc
Directory
hnrnpc-hela-20110307-lujh25-1_fastqc.zip
336.44 kB
stderr.txt
1.23 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-1_trimmed_single.tar.gz
459.91 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25_trimmed_single.tar.gz
578.01 kB
K-mers
hnrnpc-hela-20110307-lujh25-5.tar.gz
395.54 kB
K-mers
hnrnpc-hela-20110307-lujh25-1.tar.gz
224.04 kB
K-mers
u2af2-hela-ctru7-20110223-lujh23.tar.gz
566.01 kB
K-mers
hnrnpc-hela-20110307-lujh25-3.tar.gz
421.25 kB
K-mers
hnrnpc-hela-20110307-lujh25.tar.gz
324.59 kB
K-mers
u2af2-hela-kdhc1u3-20110223-lujh21.tar.gz
516.65 kB
Cutadapt (single-end)
fastqc
Directory
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed.fastq.gz
366.40 MB
report.txt
670 B
Cutadapt (single-end)
u2af2-hela-ctru7-20110223-lujh23_trimmed.fastq.gz
500.91 MB
fastqc
Directory
report.txt
668 B
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
u2af2-hela-ctru6-20110223-lujh23_trimmed.fastq.gz
83.26 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
hnrnpc-hela-20110307-lujh25-6_trimmed.fastq.gz
60.05 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
hnrnpc-hela-20110307-lujh25-5_trimmed.fastq.gz
96.60 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
665 B
hnrnpc-hela-20110307-lujh25-7_trimmed.fastq.gz
266.99 MB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed.fastq.gz
195.31 MB
Cutadapt (single-end)
report.txt
664 B
fastqc
Directory
hnrnpc-hela-20110307-lujh25-4_trimmed.fastq.gz
50.67 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
665 B
hnrnpc-hela-20110307-lujh25-3_trimmed.fastq.gz
130.14 MB
Cutadapt (single-end)
report.txt
664 B
fastqc
Directory
hnrnpc-hela-20110307-lujh25-2_trimmed.fastq.gz
40.37 MB
Cutadapt (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25-1_trimmed.fastq.gz
19.23 MB
report.txt
664 B
Cutadapt (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25_trimmed.fastq.gz
64.73 MB
report.txt
662 B
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-2_trimmed.fastq.gz
24.93 MB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-1_trimmed.fastq.gz
105.21 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
hnrnpc-hela-4h-20101116-lujh03_trimmed.fastq.gz
178.89 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
u2af2-hela-noabu1-20110223-lujh22_trimmed.fastq.gz
174.62 kB
STAR
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_stats.txt
1.81 kB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed.bam.bai
3.64 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_unmapped.out.mate1.fastq.gz
23.47 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed.bam
316.16 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_SJ.out.tab
994.73 kB
STAR
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed.bam.bai
3.69 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_stats.txt
1.80 kB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_unmapped.out.mate1.fastq.gz
17.37 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed.bw
106.62 kB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed.bam
232.08 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_SJ.out.tab
797.00 kB
STAR
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_unmapped.out.mate1.fastq.gz
3.00 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_SJ.out.tab
55.38 kB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed.bam
38.25 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed.bam.bai
3.16 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed.bw
34.74 kB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_stats.txt
1.79 kB
STAR
hnrnpc-hela-4h-20101116-lujh03-1_trimmed.bam
174.52 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_stats.txt
1.80 kB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed.bam.bai
3.91 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_SJ.out.tab
291.57 kB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_unmapped.out.mate1.fastq.gz
12.46 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed.bw
75.00 kB
STAR
hnrnpc-hela-4h-20101116-lujh03_trimmed.bam.bai
3.89 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_unmapped.out.mate1.fastq.gz
20.81 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed.bam
296.18 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_stats.txt
1.80 kB
hnrnpc-hela-4h-20101116-lujh03_trimmed_SJ.out.tab
494.28 kB
STAR
hnrnpc-hela-4h-20101116-lujh03-3_trimmed.bam.bai
3.91 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_unmapped.out.mate1.fastq.gz
36.03 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed.bam
457.52 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_SJ.out.tab
639.79 kB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_stats.txt
1.80 kB
STAR
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_stats.txt
1.81 kB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed.bam
565.74 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_unmapped.out.mate1.fastq.gz
38.02 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed.bam.bai
3.56 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_SJ.out.tab
1.48 MB
STAR
u2af2-hela-noabu1-20110223-lujh22_trimmed_stats.txt
1.78 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed.bam
298.96 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed.bw
16.98 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_unmapped.out.mate1.fastq.gz
13.79 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed.bam.bai
1.54 MB
u2af2-hela-noabu1-20110223-lujh22_trimmed_SJ.out.tab
1.48 kB
STAR
u2af2-hela-ctru6-20110223-lujh23_trimmed.bam.bai
3.69 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_unmapped.out.mate1.fastq.gz
4.55 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed.bam
128.05 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_stats.txt
1.80 kB
u2af2-hela-ctru6-20110223-lujh23_trimmed_SJ.out.tab
381.66 kB
u2af2-hela-ctru6-20110223-lujh23_trimmed.bw
76.56 kB
STAR
hnrnpc-hela-20110307-lujh25-6_trimmed_unmapped.out.mate1.fastq.gz
5.13 MB
hnrnpc-hela-20110307-lujh25-6_trimmed.bam.bai
3.48 MB
hnrnpc-hela-20110307-lujh25-6_trimmed.bam
78.91 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-6_trimmed_SJ.out.tab
71.67 kB
hnrnpc-hela-20110307-lujh25-6_trimmed.bw
43.37 kB
STAR
u2af2-hela-ctru7-20110223-lujh23_trimmed.bam.bai
2.91 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_stats.txt
1.81 kB
u2af2-hela-ctru7-20110223-lujh23_trimmed.bam
764.33 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_unmapped.out.mate1.fastq.gz
59.40 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_SJ.out.tab
1.78 MB
STAR
hnrnpc-hela-20110307-lujh25-5_trimmed_unmapped.out.mate1.fastq.gz
8.28 MB
hnrnpc-hela-20110307-lujh25-5_trimmed.bam.bai
3.88 MB
hnrnpc-hela-20110307-lujh25-5_trimmed.bam
143.22 MB
hnrnpc-hela-20110307-lujh25-5_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-5_trimmed.bw
69.59 kB
hnrnpc-hela-20110307-lujh25-5_trimmed_SJ.out.tab
157.83 kB
STAR
hnrnpc-hela-20110307-lujh25-4_trimmed_unmapped.out.mate1.fastq.gz
4.95 MB
hnrnpc-hela-20110307-lujh25-4_trimmed.bam
70.54 MB
hnrnpc-hela-20110307-lujh25-4_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-4_trimmed.bw
44.09 kB
hnrnpc-hela-20110307-lujh25-4_trimmed_SJ.out.tab
69.13 kB
hnrnpc-hela-20110307-lujh25-4_trimmed.bam.bai
3.50 MB
STAR
hnrnpc-hela-20110307-lujh25-7_trimmed_unmapped.out.mate1.fastq.gz
25.00 MB
hnrnpc-hela-20110307-lujh25-7_trimmed.bam
428.44 MB
hnrnpc-hela-20110307-lujh25-7_trimmed.bam.bai
3.82 MB
hnrnpc-hela-20110307-lujh25-7_trimmed_SJ.out.tab
588.58 kB
hnrnpc-hela-20110307-lujh25-7_trimmed_stats.txt
1.80 kB
STAR
hnrnpc-hela-20110307-lujh25-2_trimmed_unmapped.out.mate1.fastq.gz
3.67 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-2_trimmed.bam
51.65 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_SJ.out.tab
40.64 kB
hnrnpc-hela-20110307-lujh25-2_trimmed.bam.bai
3.13 MB
hnrnpc-hela-20110307-lujh25-2_trimmed.bw
34.54 kB
STAR
hnrnpc-hela-20110307-lujh25-3_trimmed_unmapped.out.mate1.fastq.gz
12.47 MB
hnrnpc-hela-20110307-lujh25-3_trimmed.bam.bai
4.01 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-3_trimmed.bam
208.27 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_SJ.out.tab
262.91 kB
STAR
hnrnpc-hela-20110307-lujh25-1_trimmed_unmapped.out.mate1.fastq.gz
1.91 MB
hnrnpc-hela-20110307-lujh25-1_trimmed.bam.bai
2.83 MB
hnrnpc-hela-20110307-lujh25-1_trimmed.bam
26.21 MB
hnrnpc-hela-20110307-lujh25-1_trimmed_stats.txt
1.79 kB
hnrnpc-hela-20110307-lujh25-1_trimmed_SJ.out.tab
23.95 kB
hnrnpc-hela-20110307-lujh25-1_trimmed.bw
29.14 kB
STAR
hnrnpc-hela-20110307-lujh25_trimmed.bam
84.46 MB
hnrnpc-hela-20110307-lujh25_trimmed_unmapped.out.mate1.fastq.gz
6.36 MB
hnrnpc-hela-20110307-lujh25_trimmed_SJ.out.tab
68.65 kB
hnrnpc-hela-20110307-lujh25_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25_trimmed.bw
40.18 kB
hnrnpc-hela-20110307-lujh25_trimmed.bam.bai
3.50 MB
iCount xlsites
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_singleAndMulti.bed.gz
21.88 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_skipped.bam
3.49 kB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single.bed.gz
15.72 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_reads_single.bed.gz
15.76 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single.bedgraph
75.43 MB
iCount xlsites
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_singleAndMulti.bed.gz
1.93 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_reads_single.bed.gz
1.10 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single.bed.gz
990.91 kB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single.bedgraph
4.15 MB
iCount xlsites
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_skipped.bam
4.25 kB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single.bed.gz
21.29 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single.bedgraph
102.79 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_reads_single.bed.gz
21.37 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_singleAndMulti.bed.gz
29.56 MB
iCount xlsites
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_skipped.bam
3.29 kB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single.bed.gz
6.18 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single.bedgraph
28.44 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_reads_single.bed.gz
6.78 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_singleAndMulti.bed.gz
11.24 MB
iCount xlsites
u2af2-hela-noabu1-20110223-lujh22_trimmed_skipped.bam
2.90 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_reads_single.bed.gz
30.46 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_single.bed.gz
30.30 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_singleAndMulti.bed.gz
42.62 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_single.bedgraph
106.83 kB
iCount xlsites
hnrnpc-hela-4h-20101116-lujh03_trimmed_singleAndMulti.bed.gz
19.14 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_single.bed.gz
10.76 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_reads_single.bed.gz
11.72 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_single.bedgraph
50.22 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_skipped.bam
3.41 kB
iCount xlsites
u2af2-hela-ctru6-20110223-lujh23_trimmed_single.bed.gz
8.42 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_skipped.bam
2.90 kB
u2af2-hela-ctru6-20110223-lujh23_trimmed_singleAndMulti.bed.gz
11.20 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_single.bedgraph
39.99 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_reads_single.bed.gz
8.64 MB
iCount xlsites
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_singleAndMulti.bed.gz
20.97 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single.bed.gz
11.06 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_skipped.bam
3.60 kB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_reads_single.bed.gz
12.42 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single.bedgraph
51.37 MB
iCount xlsites
hnrnpc-hela-20110307-lujh25-6_trimmed_singleAndMulti.bed.gz
3.37 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_skipped.bam
3.24 kB
hnrnpc-hela-20110307-lujh25-6_trimmed_reads_single.bed.gz
2.22 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_single.bed.gz
1.94 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_single.bedgraph
8.59 MB
iCount xlsites
hnrnpc-hela-20110307-lujh25-5_trimmed_single.bed.gz
6.33 MB
hnrnpc-hela-20110307-lujh25-5_trimmed_singleAndMulti.bed.gz
9.95 MB
hnrnpc-hela-20110307-lujh25-5_trimmed_single.bedgraph
29.33 MB
hnrnpc-hela-20110307-lujh25-5_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-5_trimmed_reads_single.bed.gz
6.89 MB
iCount xlsites
hnrnpc-hela-20110307-lujh25-4_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-4_trimmed_single.bed.gz
1.96 MB
hnrnpc-hela-20110307-lujh25-4_trimmed_single.bedgraph
8.67 MB
hnrnpc-hela-20110307-lujh25-4_trimmed_reads_single.bed.gz
2.22 MB
hnrnpc-hela-20110307-lujh25-4_trimmed_singleAndMulti.bed.gz
3.44 MB
iCount xlsites
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_reads_single.bed.gz
36.39 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_skipped.bam
4.51 kB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_singleAndMulti.bed.gz
49.44 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single.bedgraph
175.74 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single.bed.gz
36.24 MB
iCount xlsites
hnrnpc-hela-20110307-lujh25-3_trimmed_singleAndMulti.bed.gz
16.95 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_reads_single.bed.gz
11.38 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-3_trimmed_single.bed.gz
10.73 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_single.bedgraph
50.40 MB
iCount xlsites
hnrnpc-hela-20110307-lujh25-2_trimmed_single.bed.gz
1.07 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-2_trimmed_single.bedgraph
4.61 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_singleAndMulti.bed.gz
1.95 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_reads_single.bed.gz
1.24 MB
iCount xlsites
u2af2-hela-ctru7-20110223-lujh23_trimmed_skipped.bam
4.90 kB
u2af2-hela-ctru7-20110223-lujh23_trimmed_single.bed.gz
43.99 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_reads_single.bed.gz
44.37 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_single.bedgraph
213.51 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_singleAndMulti.bed.gz
59.60 MB
iCount xlsites
hnrnpc-hela-20110307-lujh25_trimmed_reads_single.bed.gz
1.82 MB
hnrnpc-hela-20110307-lujh25_trimmed_single.bedgraph
6.85 MB
hnrnpc-hela-20110307-lujh25_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25_trimmed_singleAndMulti.bed.gz
2.98 MB
hnrnpc-hela-20110307-lujh25_trimmed_single.bed.gz
1.57 MB
iCount xlsites
hnrnpc-hela-20110307-lujh25-7_trimmed_single.bed.gz
25.31 MB
hnrnpc-hela-20110307-lujh25-7_trimmed_skipped.bam
3.40 kB
hnrnpc-hela-20110307-lujh25-7_trimmed_reads_single.bed.gz
26.03 MB
hnrnpc-hela-20110307-lujh25-7_trimmed_singleAndMulti.bed.gz
38.09 MB
hnrnpc-hela-20110307-lujh25-7_trimmed_single.bedgraph
120.89 MB
Paraclu
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single_peaks.bed.gz
1.03 MB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
475.09 kB
demux_nomatch.fastq.gz
70.53 MB

20101116_LUjh03_SLX-2605.CRIRUN_501.s_4.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.60 kB
20101116_LUjh03_SLX-2605.CRIRUN_501.s_4.sequence_fastqc.zip
517.92 kB
20101116_LUjh03_SLX-2605.CRIRUN_501.s_4.sequence.fastq.gz
868.59 MB

20110223_LUjh21_SLX-3261.CRIRUN_555.s_3.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
20110223_LUjh21_SLX-3261.CRIRUN_555.s_3.sequence.fastq.gz
442.33 MB
20110223_LUjh21_SLX-3261.CRIRUN_555.s_3.sequence_fastqc.zip
485.61 kB
stderr.txt
1.60 kB

20110223_LUjh22_SLX-3262.CRIRUN_555.s_4.sequence.fastq.gz

FASTQ file (single-end)
stderr.txt
1.60 kB
fastqc
Directory
20110223_LUjh22_SLX-3262.CRIRUN_555.s_4.sequence.fastq.gz
456.60 MB
20110223_LUjh22_SLX-3262.CRIRUN_555.s_4.sequence_fastqc.zip
507.00 kB

20110223_LUjh23_SLX-3263.CRIRUN_555.s_5.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
20110223_LUjh23_SLX-3263.CRIRUN_555.s_5.sequence_fastqc.zip
505.01 kB
20110223_LUjh23_SLX-3263.CRIRUN_555.s_5.sequence.fastq.gz
807.98 MB
stderr.txt
1.60 kB

20110307_LUjh25_SLX-3272.CRIRUN_560.s_6.sequence.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.60 kB
20110307_LUjh25_SLX-3272.CRIRUN_560.s_6.sequence.fastq.gz
949.59 MB
20110307_LUjh25_SLX-3272.CRIRUN_560.s_6.sequence_fastqc.zip
510.67 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
34.09 MB
fastqc
Directory
demux_nomatch_fastqc.zip
460.82 kB
stderr.txt
935 B

HNRNPC_Hela_4H_20101116_LUjh03

iCount summary
hnrnpc-hela-4h-20101116-lujh03_trimmed_single_summary_subtype.tsv
1022 B
hnrnpc-hela-4h-20101116-lujh03_trimmed_single_summary_gene.tsv
1.54 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_single_summary_type.tsv
438 B
iCount RNA-maps
hnrnpc-hela-4h-20101116-lujh03_trimmed_single.tar.gz
1.02 MB
K-mers
hnrnpc-hela-4h-20101116-lujh03.tar.gz
415.53 kB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03.fastq.gz
177.53 MB
hnrnpc-hela-4h-20101116-lujh03_fastqc.zip
351.54 kB
stderr.txt
1.25 kB
Paraclu
hnrnpc-hela-4h-20101116-lujh03_trimmed_single_peaks.bed.gz
33.89 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
hnrnpc-hela-4h-20101116-lujh03_trimmed.fastq.gz
178.89 MB
STAR
hnrnpc-hela-4h-20101116-lujh03_trimmed.bam.bai
3.89 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_unmapped.out.mate1.fastq.gz
20.81 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed.bam
296.18 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_stats.txt
1.80 kB
hnrnpc-hela-4h-20101116-lujh03_trimmed_SJ.out.tab
494.28 kB
iCount xlsites
hnrnpc-hela-4h-20101116-lujh03_trimmed_singleAndMulti.bed.gz
19.14 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_single.bed.gz
10.76 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_reads_single.bed.gz
11.72 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_single.bedgraph
50.22 MB
hnrnpc-hela-4h-20101116-lujh03_trimmed_skipped.bam
3.41 kB

HNRNPC_Hela_4H_20101116_LUjh03_1

iCount summary
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single_summary_type.tsv
431 B
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single_summary_subtype.tsv
1012 B
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single_summary_gene.tsv
1.35 MB
Paraclu
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single_peaks.bed.gz
10.28 kB
iCount RNA-maps
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single.tar.gz
822.10 kB
FASTQ file (single-end)
hnrnpc-hela-4h-20101116-lujh03-1.fastq.gz
104.32 MB
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-1_fastqc.zip
349.18 kB
stderr.txt
1.28 kB
K-mers
hnrnpc-hela-4h-20101116-lujh03-1.tar.gz
377.15 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-1_trimmed.fastq.gz
105.21 MB
STAR
hnrnpc-hela-4h-20101116-lujh03-1_trimmed.bam
174.52 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_stats.txt
1.80 kB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed.bam.bai
3.91 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_SJ.out.tab
291.57 kB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_unmapped.out.mate1.fastq.gz
12.46 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed.bw
75.00 kB
iCount xlsites
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_skipped.bam
3.29 kB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single.bed.gz
6.18 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_single.bedgraph
28.44 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_reads_single.bed.gz
6.78 MB
hnrnpc-hela-4h-20101116-lujh03-1_trimmed_singleAndMulti.bed.gz
11.24 MB

HNRNPC_Hela_4H_20101116_LUjh03_2

STAR
hnrnpc-hela-4h-20101116-lujh03-2_trimmed.bam
38.25 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_unmapped.out.mate1.fastq.gz
3.00 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_SJ.out.tab
55.38 kB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed.bam.bai
3.16 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed.bw
34.74 kB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_stats.txt
1.79 kB
Paraclu
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single_peaks.bed.gz
559 B
K-mers
hnrnpc-hela-4h-20101116-lujh03-2.tar.gz
229.35 kB
iCount RNA-maps
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single.tar.gz
490.49 kB
iCount summary
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single_summary_type.tsv
428 B
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single_summary_subtype.tsv
872 B
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single_summary_gene.tsv
872.61 kB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-2.fastq.gz
24.66 MB
stderr.txt
1.28 kB
hnrnpc-hela-4h-20101116-lujh03-2_fastqc.zip
342.68 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-2_trimmed.fastq.gz
24.93 MB
iCount xlsites
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_singleAndMulti.bed.gz
1.93 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_reads_single.bed.gz
1.10 MB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single.bed.gz
990.91 kB
hnrnpc-hela-4h-20101116-lujh03-2_trimmed_single.bedgraph
4.15 MB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch_fastqc.zip
481.17 kB
demux_nomatch.fastq.gz
99.83 MB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch_fastqc.zip
483.31 kB
stderr.txt
983 B
demux_nomatch.fastq.gz
18.11 MB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
935 B
demux_nomatch.fastq.gz
76.95 MB
demux_nomatch_fastqc.zip
463.46 kB

U2AF2_Hela_CtrU6_20110223_LUjh23

iCount RNA-maps
u2af2-hela-ctru6-20110223-lujh23_trimmed_single.tar.gz
2.05 MB
K-mers
u2af2-hela-ctru6-20110223-lujh23.tar.gz
453.53 kB
iCount summary
u2af2-hela-ctru6-20110223-lujh23_trimmed_single_summary_type.tsv
441 B
u2af2-hela-ctru6-20110223-lujh23_trimmed_single_summary_subtype.tsv
1023 B
u2af2-hela-ctru6-20110223-lujh23_trimmed_single_summary_gene.tsv
1.44 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.28 kB
u2af2-hela-ctru6-20110223-lujh23.fastq.gz
81.47 MB
u2af2-hela-ctru6-20110223-lujh23_fastqc.zip
347.05 kB
Paraclu
u2af2-hela-ctru6-20110223-lujh23_trimmed_single_peaks.bed.gz
150.78 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
u2af2-hela-ctru6-20110223-lujh23_trimmed.fastq.gz
83.26 MB
STAR
u2af2-hela-ctru6-20110223-lujh23_trimmed.bam.bai
3.69 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_unmapped.out.mate1.fastq.gz
4.55 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed.bam
128.05 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_stats.txt
1.80 kB
u2af2-hela-ctru6-20110223-lujh23_trimmed_SJ.out.tab
381.66 kB
u2af2-hela-ctru6-20110223-lujh23_trimmed.bw
76.56 kB
iCount xlsites
u2af2-hela-ctru6-20110223-lujh23_trimmed_single.bed.gz
8.42 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_skipped.bam
2.90 kB
u2af2-hela-ctru6-20110223-lujh23_trimmed_singleAndMulti.bed.gz
11.20 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_single.bedgraph
39.99 MB
u2af2-hela-ctru6-20110223-lujh23_trimmed_reads_single.bed.gz
8.64 MB

U2AF2_Hela_CtrU7_20110223_LUjh23

FASTQ file (single-end)
u2af2-hela-ctru7-20110223-lujh23.fastq.gz
490.46 MB
fastqc
Directory
stderr.txt
1.28 kB
u2af2-hela-ctru7-20110223-lujh23_fastqc.zip
341.17 kB
iCount summary
u2af2-hela-ctru7-20110223-lujh23_trimmed_single_summary_type.tsv
443 B
u2af2-hela-ctru7-20110223-lujh23_trimmed_single_summary_gene.tsv
2.19 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_single_summary_subtype.tsv
1.01 kB
Paraclu
u2af2-hela-ctru7-20110223-lujh23_trimmed_single_peaks.bed.gz
1.41 MB
iCount RNA-maps
u2af2-hela-ctru7-20110223-lujh23_trimmed_single.tar.gz
4.32 MB
K-mers
u2af2-hela-ctru7-20110223-lujh23.tar.gz
566.01 kB
Cutadapt (single-end)
u2af2-hela-ctru7-20110223-lujh23_trimmed.fastq.gz
500.91 MB
fastqc
Directory
report.txt
668 B
STAR
u2af2-hela-ctru7-20110223-lujh23_trimmed.bam.bai
2.91 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_stats.txt
1.81 kB
u2af2-hela-ctru7-20110223-lujh23_trimmed.bam
764.33 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_unmapped.out.mate1.fastq.gz
59.40 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_SJ.out.tab
1.78 MB
iCount xlsites
u2af2-hela-ctru7-20110223-lujh23_trimmed_skipped.bam
4.90 kB
u2af2-hela-ctru7-20110223-lujh23_trimmed_single.bed.gz
43.99 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_reads_single.bed.gz
44.37 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_single.bedgraph
213.51 MB
u2af2-hela-ctru7-20110223-lujh23_trimmed_singleAndMulti.bed.gz
59.60 MB

HNRNPC_Hela_20110307_LUjh25

iCount summary
hnrnpc-hela-20110307-lujh25_trimmed_single_summary_subtype.tsv
936 B
hnrnpc-hela-20110307-lujh25_trimmed_single_summary_type.tsv
430 B
hnrnpc-hela-20110307-lujh25_trimmed_single_summary_gene.tsv
1022.06 kB
Paraclu
hnrnpc-hela-20110307-lujh25_trimmed_single_peaks.bed.gz
1.24 kB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25.fastq.gz
63.58 MB
stderr.txt
1.19 kB
hnrnpc-hela-20110307-lujh25_fastqc.zip
326.25 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25_trimmed_single.tar.gz
578.01 kB
K-mers
hnrnpc-hela-20110307-lujh25.tar.gz
324.59 kB
Cutadapt (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25_trimmed.fastq.gz
64.73 MB
report.txt
662 B
STAR
hnrnpc-hela-20110307-lujh25_trimmed.bam
84.46 MB
hnrnpc-hela-20110307-lujh25_trimmed_unmapped.out.mate1.fastq.gz
6.36 MB
hnrnpc-hela-20110307-lujh25_trimmed_SJ.out.tab
68.65 kB
hnrnpc-hela-20110307-lujh25_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25_trimmed.bw
40.18 kB
hnrnpc-hela-20110307-lujh25_trimmed.bam.bai
3.50 MB
iCount xlsites
hnrnpc-hela-20110307-lujh25_trimmed_reads_single.bed.gz
1.82 MB
hnrnpc-hela-20110307-lujh25_trimmed_single.bedgraph
6.85 MB
hnrnpc-hela-20110307-lujh25_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25_trimmed_singleAndMulti.bed.gz
2.98 MB
hnrnpc-hela-20110307-lujh25_trimmed_single.bed.gz
1.57 MB

HNRNPC_Hela_20110307_LUjh25_4

Paraclu
hnrnpc-hela-20110307-lujh25-4_trimmed_single_peaks.bed.gz
1.70 kB
K-mers
hnrnpc-hela-20110307-lujh25-4.tar.gz
328.39 kB
iCount summary
hnrnpc-hela-20110307-lujh25-4_trimmed_single_summary_subtype.tsv
937 B
hnrnpc-hela-20110307-lujh25-4_trimmed_single_summary_type.tsv
426 B
hnrnpc-hela-20110307-lujh25-4_trimmed_single_summary_gene.tsv
1.03 MB
FASTQ file (single-end)
hnrnpc-hela-20110307-lujh25-4.fastq.gz
49.75 MB
fastqc
Directory
hnrnpc-hela-20110307-lujh25-4_fastqc.zip
334.20 kB
stderr.txt
1.23 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-4_trimmed_single.tar.gz
590.38 kB
Cutadapt (single-end)
report.txt
664 B
fastqc
Directory
hnrnpc-hela-20110307-lujh25-4_trimmed.fastq.gz
50.67 MB
STAR
hnrnpc-hela-20110307-lujh25-4_trimmed_unmapped.out.mate1.fastq.gz
4.95 MB
hnrnpc-hela-20110307-lujh25-4_trimmed.bam
70.54 MB
hnrnpc-hela-20110307-lujh25-4_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-4_trimmed.bw
44.09 kB
hnrnpc-hela-20110307-lujh25-4_trimmed_SJ.out.tab
69.13 kB
hnrnpc-hela-20110307-lujh25-4_trimmed.bam.bai
3.50 MB
iCount xlsites
hnrnpc-hela-20110307-lujh25-4_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-4_trimmed_single.bed.gz
1.96 MB
hnrnpc-hela-20110307-lujh25-4_trimmed_single.bedgraph
8.67 MB
hnrnpc-hela-20110307-lujh25-4_trimmed_reads_single.bed.gz
2.22 MB
hnrnpc-hela-20110307-lujh25-4_trimmed_singleAndMulti.bed.gz
3.44 MB

HNRNPC_Hela_20110307_LUjh25_6

K-mers
hnrnpc-hela-20110307-lujh25-6.tar.gz
328.84 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-6_trimmed_single.tar.gz
600.26 kB
iCount summary
hnrnpc-hela-20110307-lujh25-6_trimmed_single_summary_type.tsv
429 B
hnrnpc-hela-20110307-lujh25-6_trimmed_single_summary_gene.tsv
1.01 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_single_summary_subtype.tsv
1001 B
Paraclu
hnrnpc-hela-20110307-lujh25-6_trimmed_single_peaks.bed.gz
1.43 kB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25-6.fastq.gz
58.97 MB
hnrnpc-hela-20110307-lujh25-6_fastqc.zip
330.53 kB
stderr.txt
1.23 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
hnrnpc-hela-20110307-lujh25-6_trimmed.fastq.gz
60.05 MB
STAR
hnrnpc-hela-20110307-lujh25-6_trimmed_unmapped.out.mate1.fastq.gz
5.13 MB
hnrnpc-hela-20110307-lujh25-6_trimmed.bam.bai
3.48 MB
hnrnpc-hela-20110307-lujh25-6_trimmed.bam
78.91 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-6_trimmed_SJ.out.tab
71.67 kB
hnrnpc-hela-20110307-lujh25-6_trimmed.bw
43.37 kB
iCount xlsites
hnrnpc-hela-20110307-lujh25-6_trimmed_singleAndMulti.bed.gz
3.37 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_skipped.bam
3.24 kB
hnrnpc-hela-20110307-lujh25-6_trimmed_reads_single.bed.gz
2.22 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_single.bed.gz
1.94 MB
hnrnpc-hela-20110307-lujh25-6_trimmed_single.bedgraph
8.59 MB

HNRNPC_Hela_20110307_LUjh25_7

K-mers
hnrnpc-hela-20110307-lujh25-7.tar.gz
491.37 kB
iCount summary
hnrnpc-hela-20110307-lujh25-7_trimmed_single_summary_subtype.tsv
1.00 kB
hnrnpc-hela-20110307-lujh25-7_trimmed_single_summary_type.tsv
440 B
hnrnpc-hela-20110307-lujh25-7_trimmed_single_summary_gene.tsv
1.73 MB
Paraclu
hnrnpc-hela-20110307-lujh25-7_trimmed_single_peaks.bed.gz
239.80 kB
FASTQ file (single-end)
stderr.txt
1.23 kB
fastqc
Directory
hnrnpc-hela-20110307-lujh25-7.fastq.gz
262.06 MB
hnrnpc-hela-20110307-lujh25-7_fastqc.zip
333.88 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-7_trimmed_single.tar.gz
1.61 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
665 B
hnrnpc-hela-20110307-lujh25-7_trimmed.fastq.gz
266.99 MB
STAR
hnrnpc-hela-20110307-lujh25-7_trimmed_unmapped.out.mate1.fastq.gz
25.00 MB
hnrnpc-hela-20110307-lujh25-7_trimmed.bam
428.44 MB
hnrnpc-hela-20110307-lujh25-7_trimmed.bam.bai
3.82 MB
hnrnpc-hela-20110307-lujh25-7_trimmed_SJ.out.tab
588.58 kB
hnrnpc-hela-20110307-lujh25-7_trimmed_stats.txt
1.80 kB
iCount xlsites
hnrnpc-hela-20110307-lujh25-7_trimmed_single.bed.gz
25.31 MB
hnrnpc-hela-20110307-lujh25-7_trimmed_skipped.bam
3.40 kB
hnrnpc-hela-20110307-lujh25-7_trimmed_reads_single.bed.gz
26.03 MB
hnrnpc-hela-20110307-lujh25-7_trimmed_singleAndMulti.bed.gz
38.09 MB
hnrnpc-hela-20110307-lujh25-7_trimmed_single.bedgraph
120.89 MB

U2AF2_Hela_KDHC1U2_20110223_LUjh21

K-mers
u2af2-hela-kdhc1u2-20110223-lujh21.tar.gz
491.76 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed.fastq.gz
142.79 MB
iCount summary
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single_summary_type.tsv
440 B
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single_summary_gene.tsv
1.70 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single_summary_subtype.tsv
1.00 kB
Paraclu
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single_peaks.bed.gz
318.65 kB
FASTQ file (single-end)
u2af2-hela-kdhc1u2-20110223-lujh21.fastq.gz
139.36 MB
stderr.txt
1.32 kB
fastqc
Directory
u2af2-hela-kdhc1u2-20110223-lujh21_fastqc.zip
333.73 kB
iCount RNA-maps
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single.tar.gz
2.67 MB
STAR
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed.bam.bai
3.69 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_stats.txt
1.80 kB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_unmapped.out.mate1.fastq.gz
17.37 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed.bw
106.62 kB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed.bam
232.08 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_SJ.out.tab
797.00 kB
iCount xlsites
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_singleAndMulti.bed.gz
21.88 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_skipped.bam
3.49 kB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single.bed.gz
15.72 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_reads_single.bed.gz
15.76 MB
u2af2-hela-kdhc1u2-20110223-lujh21_trimmed_single.bedgraph
75.43 MB

U2AF2_Hela_KDHC1U3_20110223_LUjh21

iCount RNA-maps
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single.tar.gz
3.04 MB
iCount summary
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single_summary_type.tsv
438 B
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single_summary_gene.tsv
1.83 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single_summary_subtype.tsv
1.00 kB
FASTQ file (single-end)
u2af2-hela-kdhc1u3-20110223-lujh21.fastq.gz
190.79 MB
stderr.txt
1.32 kB
fastqc
Directory
u2af2-hela-kdhc1u3-20110223-lujh21_fastqc.zip
330.88 kB
Paraclu
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single_peaks.bed.gz
524.10 kB
K-mers
u2af2-hela-kdhc1u3-20110223-lujh21.tar.gz
516.65 kB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed.fastq.gz
195.31 MB
STAR
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_stats.txt
1.81 kB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed.bam.bai
3.64 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_unmapped.out.mate1.fastq.gz
23.47 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed.bam
316.16 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_SJ.out.tab
994.73 kB
iCount xlsites
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_skipped.bam
4.25 kB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single.bed.gz
21.29 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_single.bedgraph
102.79 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_reads_single.bed.gz
21.37 MB
u2af2-hela-kdhc1u3-20110223-lujh21_trimmed_singleAndMulti.bed.gz
29.56 MB

HNRNPC_Hela_4H_20101116_LUjh03_3

Paraclu
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single_peaks.bed.gz
41.39 kB
iCount summary
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single_summary_type.tsv
438 B
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single_summary_gene.tsv
1.59 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single.tar.gz
1.02 MB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-4h-20101116-lujh03-3_fastqc.zip
350.22 kB
stderr.txt
1.28 kB
hnrnpc-hela-4h-20101116-lujh03-3.fastq.gz
297.52 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
hnrnpc-hela-4h-20101116-lujh03-3_trimmed.fastq.gz
299.07 MB
K-mers
hnrnpc-hela-4h-20101116-lujh03-3.tar.gz
430.44 kB
STAR
hnrnpc-hela-4h-20101116-lujh03-3_trimmed.bam.bai
3.91 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_unmapped.out.mate1.fastq.gz
36.03 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed.bam
457.52 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_SJ.out.tab
639.79 kB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_stats.txt
1.80 kB
iCount xlsites
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_singleAndMulti.bed.gz
20.97 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single.bed.gz
11.06 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_skipped.bam
3.60 kB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_reads_single.bed.gz
12.42 MB
hnrnpc-hela-4h-20101116-lujh03-3_trimmed_single.bedgraph
51.37 MB

U2AF2_Hela_KDHC2U4_20110223_LUjh22

FASTQ file (single-end)
fastqc
Directory
u2af2-hela-kdhc2u4-20110223-lujh22.fastq.gz
357.73 MB
stderr.txt
1.39 kB
u2af2-hela-kdhc2u4-20110223-lujh22_fastqc.zip
332.79 kB
iCount RNA-maps
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single.tar.gz
3.88 MB
iCount summary
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single_summary_type.tsv
442 B
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single_summary_subtype.tsv
1.01 kB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single_summary_gene.tsv
1.99 MB
K-mers
u2af2-hela-kdhc2u4-20110223-lujh22.tar.gz
551.98 kB
Cutadapt (single-end)
fastqc
Directory
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed.fastq.gz
366.40 MB
report.txt
670 B
STAR
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_stats.txt
1.81 kB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed.bam
565.74 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_unmapped.out.mate1.fastq.gz
38.02 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed.bam.bai
3.56 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_SJ.out.tab
1.48 MB
iCount xlsites
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_reads_single.bed.gz
36.39 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_skipped.bam
4.51 kB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_singleAndMulti.bed.gz
49.44 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single.bedgraph
175.74 MB
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single.bed.gz
36.24 MB
Paraclu
u2af2-hela-kdhc2u4-20110223-lujh22_trimmed_single_peaks.bed.gz
1.03 MB

U2AF2_Hela_noABU1_20110223_LUjh22

iCount summary
u2af2-hela-noabu1-20110223-lujh22_trimmed_single_summary_type.tsv
405 B
u2af2-hela-noabu1-20110223-lujh22_trimmed_single_summary_subtype.tsv
639 B
u2af2-hela-noabu1-20110223-lujh22_trimmed_single_summary_gene.tsv
186.48 kB
iCount RNA-maps
u2af2-hela-noabu1-20110223-lujh22_trimmed_single.tar.gz
315.66 kB
FASTQ file (single-end)
fastqc
Directory
u2af2-hela-noabu1-20110223-lujh22.fastq.gz
176.05 kB
stderr.txt
398 B
u2af2-hela-noabu1-20110223-lujh22_fastqc.zip
330.31 kB
Paraclu
u2af2-hela-noabu1-20110223-lujh22_trimmed_single_peaks.bed.gz
111 B
K-mers
u2af2-hela-noabu1-20110223-lujh22.tar.gz
135 B
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
u2af2-hela-noabu1-20110223-lujh22_trimmed.fastq.gz
174.62 kB
STAR
u2af2-hela-noabu1-20110223-lujh22_trimmed_stats.txt
1.78 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed.bam
298.96 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed.bw
16.98 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_unmapped.out.mate1.fastq.gz
13.79 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed.bam.bai
1.54 MB
u2af2-hela-noabu1-20110223-lujh22_trimmed_SJ.out.tab
1.48 kB
iCount xlsites
u2af2-hela-noabu1-20110223-lujh22_trimmed_skipped.bam
2.90 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_reads_single.bed.gz
30.46 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_single.bed.gz
30.30 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_singleAndMulti.bed.gz
42.62 kB
u2af2-hela-noabu1-20110223-lujh22_trimmed_single.bedgraph
106.83 kB

HNRNPC_Hela_20110307_LUjh25_1

iCount xlsites
hnrnpc-hela-20110307-lujh25-1_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-1_trimmed_singleAndMulti.bed.gz
1.24 MB
hnrnpc-hela-20110307-lujh25-1_trimmed_single.bed.gz
698.66 kB
hnrnpc-hela-20110307-lujh25-1_trimmed_reads_single.bed.gz
799.42 kB
hnrnpc-hela-20110307-lujh25-1_trimmed_single.bedgraph
2.89 MB
iCount summary
hnrnpc-hela-20110307-lujh25-1_trimmed_single_summary_type.tsv
426 B
hnrnpc-hela-20110307-lujh25-1_trimmed_single_summary_subtype.tsv
867 B
hnrnpc-hela-20110307-lujh25-1_trimmed_single_summary_gene.tsv
804.92 kB
Paraclu
hnrnpc-hela-20110307-lujh25-1_trimmed_single_peaks.bed.gz
392 B
FASTQ file (single-end)
hnrnpc-hela-20110307-lujh25-1.fastq.gz
18.88 MB
fastqc
Directory
hnrnpc-hela-20110307-lujh25-1_fastqc.zip
336.44 kB
stderr.txt
1.23 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-1_trimmed_single.tar.gz
459.91 kB
K-mers
hnrnpc-hela-20110307-lujh25-1.tar.gz
224.04 kB
Cutadapt (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25-1_trimmed.fastq.gz
19.23 MB
report.txt
664 B
STAR
hnrnpc-hela-20110307-lujh25-1_trimmed_unmapped.out.mate1.fastq.gz
1.91 MB
hnrnpc-hela-20110307-lujh25-1_trimmed.bam.bai
2.83 MB
hnrnpc-hela-20110307-lujh25-1_trimmed.bam
26.21 MB
hnrnpc-hela-20110307-lujh25-1_trimmed_stats.txt
1.79 kB
hnrnpc-hela-20110307-lujh25-1_trimmed_SJ.out.tab
23.95 kB
hnrnpc-hela-20110307-lujh25-1_trimmed.bw
29.14 kB

HNRNPC_Hela_20110307_LUjh25_2

iCount summary
hnrnpc-hela-20110307-lujh25-2_trimmed_single_summary_subtype.tsv
936 B
hnrnpc-hela-20110307-lujh25-2_trimmed_single_summary_type.tsv
426 B
hnrnpc-hela-20110307-lujh25-2_trimmed_single_summary_gene.tsv
915.33 kB
K-mers
hnrnpc-hela-20110307-lujh25-2.tar.gz
248.62 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-2_trimmed_single.tar.gz
514.45 kB
FASTQ file (single-end)
hnrnpc-hela-20110307-lujh25-2.fastq.gz
39.61 MB
fastqc
Directory
stderr.txt
1.23 kB
hnrnpc-hela-20110307-lujh25-2_fastqc.zip
335.54 kB
Paraclu
hnrnpc-hela-20110307-lujh25-2_trimmed_single_peaks.bed.gz
677 B
Cutadapt (single-end)
report.txt
664 B
fastqc
Directory
hnrnpc-hela-20110307-lujh25-2_trimmed.fastq.gz
40.37 MB
STAR
hnrnpc-hela-20110307-lujh25-2_trimmed_unmapped.out.mate1.fastq.gz
3.67 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-2_trimmed.bam
51.65 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_SJ.out.tab
40.64 kB
hnrnpc-hela-20110307-lujh25-2_trimmed.bam.bai
3.13 MB
hnrnpc-hela-20110307-lujh25-2_trimmed.bw
34.54 kB
iCount xlsites
hnrnpc-hela-20110307-lujh25-2_trimmed_single.bed.gz
1.07 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-2_trimmed_single.bedgraph
4.61 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_singleAndMulti.bed.gz
1.95 MB
hnrnpc-hela-20110307-lujh25-2_trimmed_reads_single.bed.gz
1.24 MB

HNRNPC_Hela_20110307_LUjh25_3

iCount summary
hnrnpc-hela-20110307-lujh25-3_trimmed_single_summary_subtype.tsv
1019 B
hnrnpc-hela-20110307-lujh25-3_trimmed_single_summary_gene.tsv
1.43 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_single_summary_type.tsv
438 B
Paraclu
hnrnpc-hela-20110307-lujh25-3_trimmed_single_peaks.bed.gz
36.27 kB
FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25-3.fastq.gz
127.64 MB
hnrnpc-hela-20110307-lujh25-3_fastqc.zip
338.60 kB
stderr.txt
1.23 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-3_trimmed_single.tar.gz
1.10 MB
K-mers
hnrnpc-hela-20110307-lujh25-3.tar.gz
421.25 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
665 B
hnrnpc-hela-20110307-lujh25-3_trimmed.fastq.gz
130.14 MB
STAR
hnrnpc-hela-20110307-lujh25-3_trimmed_unmapped.out.mate1.fastq.gz
12.47 MB
hnrnpc-hela-20110307-lujh25-3_trimmed.bam.bai
4.01 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-3_trimmed.bam
208.27 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_SJ.out.tab
262.91 kB
iCount xlsites
hnrnpc-hela-20110307-lujh25-3_trimmed_singleAndMulti.bed.gz
16.95 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_reads_single.bed.gz
11.38 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-3_trimmed_single.bed.gz
10.73 MB
hnrnpc-hela-20110307-lujh25-3_trimmed_single.bedgraph
50.40 MB

HNRNPC_Hela_20110307_LUjh25_5

FASTQ file (single-end)
fastqc
Directory
hnrnpc-hela-20110307-lujh25-5.fastq.gz
94.78 MB
stderr.txt
1.23 kB
hnrnpc-hela-20110307-lujh25-5_fastqc.zip
337.64 kB
iCount RNA-maps
hnrnpc-hela-20110307-lujh25-5_trimmed_single.tar.gz
889.78 kB
Paraclu
hnrnpc-hela-20110307-lujh25-5_trimmed_single_peaks.bed.gz
13.63 kB
iCount summary
hnrnpc-hela-20110307-lujh25-5_trimmed_single_summary_type.tsv
436 B
hnrnpc-hela-20110307-lujh25-5_trimmed_single_summary_subtype.tsv
1012 B
hnrnpc-hela-20110307-lujh25-5_trimmed_single_summary_gene.tsv
1.28 MB
K-mers
hnrnpc-hela-20110307-lujh25-5.tar.gz
395.54 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
hnrnpc-hela-20110307-lujh25-5_trimmed.fastq.gz
96.60 MB
STAR
hnrnpc-hela-20110307-lujh25-5_trimmed_unmapped.out.mate1.fastq.gz
8.28 MB
hnrnpc-hela-20110307-lujh25-5_trimmed.bam.bai
3.88 MB
hnrnpc-hela-20110307-lujh25-5_trimmed.bam
143.22 MB
hnrnpc-hela-20110307-lujh25-5_trimmed_stats.txt
1.80 kB
hnrnpc-hela-20110307-lujh25-5_trimmed.bw
69.59 kB
hnrnpc-hela-20110307-lujh25-5_trimmed_SJ.out.tab
157.83 kB
iCount xlsites
hnrnpc-hela-20110307-lujh25-5_trimmed_single.bed.gz
6.33 MB
hnrnpc-hela-20110307-lujh25-5_trimmed_singleAndMulti.bed.gz
9.95 MB
hnrnpc-hela-20110307-lujh25-5_trimmed_single.bedgraph
29.33 MB
hnrnpc-hela-20110307-lujh25-5_trimmed_skipped.bam
2.90 kB
hnrnpc-hela-20110307-lujh25-5_trimmed_reads_single.bed.gz
6.89 MB