Back to Archive

Folder iconSpliceosome in ENCODE Lines and HEK293

apibot
May 14, 2019
This experiment compares spliceosome positioning in K562, HepG2 or HEK293 cell lines by using iCLIP with antibody against SmB/B’. A comparison is made between mild and medium stringency washing conditions. Cells were UV crosslinked on ice and subjected to iCLIP analysis. RNase I was added to cell lysate for RNA fragmentation. Pre-coupled anti-SmB/B’ magnetic dynabeads were used to isolate Protein-RNA complexes, and RNA was ligated to L3 adaptor. The complexes were then size-separated with SDS-PAGE and visualised. cDNA was synthesized with Superscript IV Reverse Transcriptase, cDNA was then circularised. After PCR amplification, libraries were QCed for sequencing.

SNRPB_HEK293_Mild Lysis/Wash 3_20190213_JU

FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-3-20190213-ju_fastqc.zip
497.14 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju.fastq.gz
185.56 MB
stderr.txt
1.48 kB
iCount summary
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.83 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1015 B
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
435 B
iCount RNA-maps
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
2.32 MB
Paraclu
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
43.65 kB
K-mers
snrpb-hek293-mild-lysis-wash-3-20190213-ju.tar.gz
397.39 kB
Cutadapt (single-end)
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
187.13 MB
fastqc
Directory
report.txt
678 B
STAR
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
33.22 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.bam
929.07 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.34 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.53 MB
iCount xlsites
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
7.43 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
4.39 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
13.12 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
7.69 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
34.20 MB

No Sample

K-mers
kmer_frequency_intron.tsv
5.81 kB
positional_distribution_ncRNA.tsv
535.62 kB
positional_distribution_intron.tsv
462.90 kB
ncRNA region.png
204.03 kB
kmer_frequency_ncRNA.tsv
5.81 kB
intron region.png
295.54 kB
kmer_frequency_utr3.tsv
5.68 kB
positional_distribution_utr3.tsv
342.25 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_other_exon.tsv
502.99 kB
positional_distribution_genome.tsv
565.28 kB
other_exon region.png
267.20 kB
utr3 region.png
270.65 kB
kmer_frequency_genome.tsv
5.92 kB
genome region.png
256.64 kB
FASTQ file (single-end)
stderr.txt
1.48 kB
fastqc
Directory
snrpb-k562-normal-lysis-wash-1-20190213-ju.fastq.gz
255.99 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_fastqc.zip
540.23 kB
iCount RNA-maps
results.tar.gz
1.80 MB
FASTQ file (single-end)
stderr.txt
1.44 kB
fastqc
Directory
snrpb-k562-mild-lysis-wash-3-20190213-ju.fastq.gz
157.26 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_fastqc.zip
541.32 kB
iCount RNA-maps
results.tar.gz
2.48 MB
K-mers
positional_distribution_genome.tsv
557.26 kB
positional_distribution_ncRNA.tsv
551.63 kB
kmer_frequency_ncRNA.tsv
5.86 kB
positional_distribution_intron.tsv
558.56 kB
positional_distribution_utr3.tsv
461.44 kB
other_exon region.png
205.16 kB
positional_distribution_other_exon.tsv
569.51 kB
utr3 region.png
281.63 kB
kmer_frequency_other_exon.tsv
5.83 kB
intron region.png
190.86 kB
kmer_frequency_intron.tsv
5.86 kB
kmer_frequency_utr3.tsv
5.81 kB
ncRNA region.png
201.52 kB
genome region.png
218.37 kB
kmer_frequency_genome.tsv
5.79 kB
STAR
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.20 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
2.03 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
47.13 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.bam
1.06 GB
iCount summary
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
439 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1021 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.55 MB
iCount RNA-maps
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
1.56 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.48 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju.fastq.gz
238.64 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_fastqc.zip
600.30 kB
iCount summary
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.93 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1022 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
443 B
iCount RNA-maps
results.tar.gz
2.37 MB
STAR
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.27 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.bam
3.78 GB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.82 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.94 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
102.21 MB
iCount RNA-maps
results.tar.gz
1.55 MB
iCount RNA-maps
results.tar.gz
2.41 MB
iCount summary
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.96 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
444 B
Paraclu
peaks.bed.gz
97.68 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-normal-lysis-wash-1-20190213-ju.fastq.gz
255.99 MB
stderr.txt
1.42 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_fastqc.zip
540.22 kB
Paraclu
peaks.bed.gz
71.00 kB
iCount RNA-maps
results.tar.gz
1.56 MB
iCount RNA-maps
results.tar.gz
2.85 MB
K-mers
kmer_frequency_ncRNA.tsv
5.89 kB
positional_distribution_intron.tsv
566.17 kB
ncRNA region.png
192.73 kB
other_exon region.png
200.25 kB
kmer_frequency_intron.tsv
5.81 kB
intron region.png
209.56 kB
kmer_frequency_utr3.tsv
5.86 kB
utr3 region.png
249.06 kB
positional_distribution_ncRNA.tsv
566.39 kB
kmer_frequency_genome.tsv
5.90 kB
positional_distribution_genome.tsv
569.76 kB
kmer_frequency_other_exon.tsv
5.82 kB
positional_distribution_other_exon.tsv
557.79 kB
positional_distribution_utr3.tsv
532.73 kB
genome region.png
194.11 kB
iCount RNA-maps
results.tar.gz
2.95 MB
iCount summary
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
402 B
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
752 B
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
86.63 kB
K-mers
positional_distribution_ncRNA.tsv
35.61 kB
kmer_frequency_ncRNA.tsv
676 B
kmer_frequency_genome.tsv
715 B
ncRNA region.png
166.87 kB
genome region.png
167.89 kB
positional_distribution_genome.tsv
35.61 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.44 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju.fastq.gz
415.70 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_fastqc.zip
486.89 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.44 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju.fastq.gz
243.97 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_fastqc.zip
526.21 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-normal-lysis-wash-3-20190213-ju_fastqc.zip
623.53 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju.fastq.gz
183.41 MB
stderr.txt
1.42 kB
FASTQ file (single-end)
snrpb-k562-mild-lysis-wash-1-20190213-ju.fastq.gz
579.79 MB
fastqc
Directory
stderr.txt
1.38 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_fastqc.zip
531.32 kB
iCount summary
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
446 B
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
2.19 MB
iCount xlsites
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.25 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
13.79 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
7.84 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
8.13 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
36.61 MB
iCount xlsites
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
3.41 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
4.13 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
4.02 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
6.94 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
18.27 MB
K-mers
other_exon region.png
219.52 kB
kmer_frequency_intron.tsv
5.87 kB
positional_distribution_ncRNA.tsv
548.14 kB
intron region.png
253.82 kB
positional_distribution_intron.tsv
524.33 kB
ncRNA region.png
200.95 kB
kmer_frequency_genome.tsv
5.84 kB
positional_distribution_utr3.tsv
425.63 kB
kmer_frequency_ncRNA.tsv
5.82 kB
utr3 region.png
248.50 kB
kmer_frequency_utr3.tsv
5.77 kB
genome region.png
228.54 kB
kmer_frequency_other_exon.tsv
5.84 kB
positional_distribution_genome.tsv
575.80 kB
positional_distribution_other_exon.tsv
550.99 kB
K-mers
other_exon region.png
261.70 kB
kmer_frequency_intron.tsv
5.82 kB
positional_distribution_ncRNA.tsv
525.23 kB
kmer_frequency_utr3.tsv
5.47 kB
positional_distribution_utr3.tsv
313.03 kB
positional_distribution_intron.tsv
396.22 kB
positional_distribution_genome.tsv
546.08 kB
utr3 region.png
236.49 kB
kmer_frequency_other_exon.tsv
5.84 kB
intron region.png
191.76 kB
genome region.png
227.85 kB
ncRNA region.png
226.42 kB
positional_distribution_other_exon.tsv
407.49 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.82 kB
K-mers
other_exon region.png
214.03 kB
positional_distribution_intron.tsv
500.15 kB
kmer_frequency_intron.tsv
5.79 kB
ncRNA region.png
249.98 kB
kmer_frequency_ncRNA.tsv
5.77 kB
kmer_frequency_utr3.tsv
5.85 kB
positional_distribution_ncRNA.tsv
534.00 kB
intron region.png
234.89 kB
positional_distribution_utr3.tsv
413.70 kB
positional_distribution_genome.tsv
570.58 kB
kmer_frequency_other_exon.tsv
5.83 kB
kmer_frequency_genome.tsv
5.84 kB
genome region.png
254.77 kB
positional_distribution_other_exon.tsv
559.08 kB
utr3 region.png
247.68 kB
iCount xlsites
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
19.70 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.07 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
20.33 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
37.78 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
93.10 MB
Paraclu
peaks.bed.gz
179.60 kB
Paraclu
peaks.bed.gz
316.82 kB
Cutadapt (single-end)
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
58.30 MB
fastqc
Directory
report.txt
712 B
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
495.72 kB
Paraclu
peaks.bed.gz
147.65 kB
STAR
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
33.17 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.34 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.53 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.bam
1.17 GB
Cutadapt (single-end)
fastqc
Directory
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
505.43 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
157.08 MB
report.txt
711 B
FASTQ file (single-end)
stderr.txt
1.52 kB
fastqc
Directory
snrpb-hek293-normal-lysis-wash-3-20190213-ju.fastq.gz
141.22 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_fastqc.zip
462.40 kB
iCount xlsites
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
10.31 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.51 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
5.95 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
6.16 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
27.61 MB
iCount xlsites
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
10.19 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.55 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
16.19 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
47.61 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
10.47 MB
iCount RNA-maps
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
3.43 MB
iCount RNA-maps
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
3.19 MB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-2-20190213-ju.fastq.gz
256.53 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_fastqc.zip
505.47 kB
stderr.txt
1.51 kB
iCount RNA-maps
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
2.00 MB
Paraclu
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
25.80 kB
iCount RNA-maps
results.tar.gz
2.40 MB
Paraclu
peaks.bed.gz
25.69 kB
iCount summary
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
439 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1021 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.55 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
710 B
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
245.49 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
603.66 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
707 B
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
160.83 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
542.87 kB
Cutadapt (single-end)
report.txt
710 B
fastqc
Directory
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
262.63 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
548.25 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
507.75 kB
report.txt
708 B
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
260.12 MB
Cutadapt (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
186.82 MB
report.txt
709 B
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
498.99 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
140.21 MB
report.txt
709 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
479.78 kB
Cutadapt (single-end)
report.txt
708 B
fastqc
Directory
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
589.67 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
535.80 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
711 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
140.22 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
463.75 kB
K-mers
snrpb-hepg2-normal-lysis-wash-1-20190213-ju.tar.gz
512.43 kB
K-mers
snrpb-k562-mild-lysis-wash-3-20190213-ju.tar.gz
368.23 kB
K-mers
snrpb-k562-normal-lysis-wash-3-20190213-ju.tar.gz
411.05 kB
K-mers
snrpb-hepg2-mild-lysis-wash-1-20190213-ju.tar.gz
459.41 kB
K-mers
snrpb-hek293-normal-lysis-wash-2-20190213-ju.tar.gz
436.54 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_fastqc.zip
526.23 kB
stderr.txt
1.50 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju.fastq.gz
243.97 MB
iCount summary
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
444 B
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.96 MB
iCount RNA-maps
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
2.41 MB
K-mers
snrpb-hepg2-normal-lysis-wash-3-20190213-ju.tar.gz
467.10 kB
Paraclu
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
128.40 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.50 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju.fastq.gz
492.86 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_fastqc.zip
490.65 kB
Cutadapt (single-end)
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
501.56 MB
fastqc
Directory
report.txt
679 B
K-mers
snrpb-hepg2-normal-lysis-wash-2-20190213-ju.tar.gz
535.68 kB
Paraclu
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
482.08 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.50 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju.fastq.gz
415.70 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_fastqc.zip
486.90 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-3-20190213-ju.fastq.gz
871.03 kB
stderr.txt
1.46 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_fastqc.zip
591.78 kB
K-mers
snrpb-hepg2-mild-lysis-wash-3-20190213-ju.tar.gz
145 B
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_fastqc.zip
523.89 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju.fastq.gz
248.85 MB
stderr.txt
1.46 kB
iCount RNA-maps
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
2.95 MB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-normal-lysis-wash-3-20190213-ju.fastq.gz
183.41 MB
stderr.txt
1.48 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju_fastqc.zip
623.55 kB
Paraclu
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
44.92 kB
iCount RNA-maps
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
1.80 MB
Paraclu
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
71.09 kB
K-mers
snrpb-k562-normal-lysis-wash-2-20190213-ju.tar.gz
429.30 kB
iCount RNA-maps
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
1.94 MB
Paraclu
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
97.82 kB
K-mers
snrpb-k562-normal-lysis-wash-1-20190213-ju.tar.gz
453.37 kB
iCount summary
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.54 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
1.55 MB
Paraclu
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
27.15 kB
iCount summary
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
438 B
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1017 B
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.81 MB
iCount RNA-maps
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
2.48 MB
K-mers
snrpb-k562-mild-lysis-wash-2-20190213-ju.tar.gz
450.46 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-1-20190213-ju.fastq.gz
579.79 MB
stderr.txt
1.44 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_fastqc.zip
531.33 kB
Paraclu
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
147.76 kB
iCount summary
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
446 B
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
2.19 MB
iCount RNA-maps
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
3.28 MB
Paraclu
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
317.16 kB
K-mers
snrpb-k562-mild-lysis-wash-1-20190213-ju.tar.gz
497.98 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-3-20190213-ju_fastqc.zip
497.14 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju.fastq.gz
185.56 MB
stderr.txt
1.48 kB
iCount summary
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.83 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1015 B
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
435 B
iCount RNA-maps
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
2.32 MB
Paraclu
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
43.65 kB
K-mers
snrpb-hek293-mild-lysis-wash-3-20190213-ju.tar.gz
397.39 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-2-20190213-ju.fastq.gz
144.50 MB
stderr.txt
1.48 kB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_fastqc.zip
480.60 kB
iCount summary
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1016 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
440 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.77 MB
K-mers
snrpb-hek293-mild-lysis-wash-2-20190213-ju.tar.gz
376.08 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-1-20190213-ju_fastqc.zip
489.43 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju.fastq.gz
258.25 MB
stderr.txt
1.48 kB
iCount summary
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.96 MB
iCount RNA-maps
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
2.85 MB
K-mers
snrpb-hek293-mild-lysis-wash-1-20190213-ju.tar.gz
432.42 kB
Paraclu
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
98.15 kB
K-mers
snrpb-hek293-normal-lysis-wash-3-20190213-ju.tar.gz
441.32 kB
iCount summary
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1022 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.93 MB
iCount RNA-maps
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
2.40 MB
Paraclu
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
110.25 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-normal-lysis-wash-2-20190213-ju.fastq.gz
155.46 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_fastqc.zip
500.79 kB
stderr.txt
1.52 kB
iCount summary
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1016 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
442 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.90 MB
iCount RNA-maps
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
2.37 MB
Paraclu
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
103.34 kB
FASTQ file (single-end)
stderr.txt
1.52 kB
fastqc
Directory
snrpb-hek293-normal-lysis-wash-1-20190213-ju.fastq.gz
62.51 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_fastqc.zip
493.07 kB
K-mers
snrpb-hek293-normal-lysis-wash-1-20190213-ju.tar.gz
366.98 kB
iCount RNA-maps
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
1.45 MB
Paraclu
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
22.87 kB
Cutadapt (single-end)
report.txt
679 B
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
249.33 MB
Cutadapt (single-end)
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
424.18 MB
report.txt
679 B
Cutadapt (single-end)
report.txt
676 B
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
894.75 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
254.52 MB
report.txt
677 B
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
189.44 MB
Cutadapt (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
260.54 MB
report.txt
676 B
Cutadapt (single-end)
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
187.13 MB
fastqc
Directory
report.txt
678 B
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
590.70 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
140.42 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
246.07 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
140.40 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
161.15 MB
Cutadapt (single-end)
report.txt
678 B
fastqc
Directory
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
263.16 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
259.01 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
157.35 MB
Cutadapt (single-end)
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
58.38 MB
report.txt
680 B
fastqc
Directory
STAR
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.bam
1.08 GB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
47.44 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
3.82 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.93 MB
STAR
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.bam
1.64 GB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
3.30 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
3.46 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
91.95 MB
STAR
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
3.46 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
79.04 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.82 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
3.06 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.bam
1.47 GB
STAR
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.09 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
26.83 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.bam
1.09 GB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.24 MB
STAR
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
1.46 MB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bam
1.59 MB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
741.71 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bw
18.45 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.78 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
3.24 kB
STAR
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
39.14 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.bam
1.21 GB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.39 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.07 MB
STAR
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
35.42 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.27 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.bam
1.40 GB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.58 MB
STAR
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.bam
905.15 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.46 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
29.82 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1002.75 kB
STAR
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
38.43 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.10 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.bam
1.23 GB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
1.78 MB
STAR
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
33.22 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.bam
929.07 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.34 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.53 MB
STAR
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.23 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.bam
2.93 GB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.94 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.82 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
102.37 MB
STAR
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
35.19 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.34 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.18 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.bam
615.00 MB
STAR
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
29.81 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.62 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.bam
401.45 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
3.92 MB
STAR
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
46.52 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.25 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.bam
1.21 GB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.08 MB
STAR
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.00 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.bam
182.17 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
14.47 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
796.84 kB
STAR
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.bam
607.94 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
27.66 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.60 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
3.98 MB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
5.29 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
43.05 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
26.39 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
27.21 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
125.63 MB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.74 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
14.99 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
25.99 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
14.51 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
68.16 MB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
37.29 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
2.90 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
12.93 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
12.57 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
41.44 kB
iCount summary
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
752 B
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
402 B
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
86.63 kB
iCount RNA-maps
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
297.18 kB
Paraclu
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
150 B
iCount xlsites
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
5.40 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
34.12 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
56.49 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
157.62 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
33.16 MB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
12.86 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
3.29 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
13.13 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
21.60 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
60.74 MB
iCount xlsites
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
4.18 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
8.44 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.13 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
19.06 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
4.35 MB
Paraclu
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
179.88 kB
iCount xlsites
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
49.92 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
10.61 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.93 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
17.53 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
11.03 MB
iCount xlsites
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
7.43 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
4.39 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
13.12 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
7.69 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
34.20 MB
iCount xlsites
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.22 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
13.79 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
7.84 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
36.61 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
8.13 MB
iCount xlsites
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.58 kB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
10.92 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
5.88 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
25.84 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
5.68 MB
iCount xlsites
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
4.16 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
17.48 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
10.67 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
10.93 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
49.78 MB
iCount xlsites
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.51 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
12.76 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
13.18 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
20.54 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
59.85 MB
iCount xlsites
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
4.02 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
3.38 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
6.94 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
4.13 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
18.27 MB
iCount xlsites
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
18.27 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.11 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
49.28 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
10.57 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
10.94 MB
iCount xlsites
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.04 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
93.10 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
20.33 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
19.70 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
37.78 MB
iCount summary
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
451 B
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
2.33 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1.02 kB
iCount summary
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
449 B
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
2.20 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
Paraclu
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
384.19 kB
iCount summary
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.90 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
441 B
iCount summary
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
436 B
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.68 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
iCount summary
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
444 B
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.85 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
iCount summary
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
440 B
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.56 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1014 B
K-mers
kmer_frequency_intron.tsv
5.88 kB
positional_distribution_ncRNA.tsv
547.77 kB
intron region.png
202.81 kB
kmer_frequency_genome.tsv
5.78 kB
kmer_frequency_ncRNA.tsv
5.84 kB
positional_distribution_intron.tsv
548.32 kB
utr3 region.png
252.14 kB
other_exon region.png
221.81 kB
kmer_frequency_utr3.tsv
5.81 kB
kmer_frequency_other_exon.tsv
5.87 kB
ncRNA region.png
249.79 kB
positional_distribution_utr3.tsv
467.96 kB
positional_distribution_genome.tsv
558.48 kB
positional_distribution_other_exon.tsv
568.78 kB
genome region.png
217.28 kB
K-mers
kmer_frequency_ncRNA.tsv
5.79 kB
other_exon region.png
231.07 kB
positional_distribution_intron.tsv
523.71 kB
intron region.png
251.87 kB
kmer_frequency_utr3.tsv
5.80 kB
positional_distribution_utr3.tsv
362.63 kB
kmer_frequency_genome.tsv
5.83 kB
ncRNA region.png
264.23 kB
kmer_frequency_intron.tsv
5.89 kB
utr3 region.png
252.68 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_genome.tsv
572.43 kB
genome region.png
231.77 kB
positional_distribution_other_exon.tsv
557.97 kB
positional_distribution_ncRNA.tsv
534.16 kB
iCount RNA-maps
results.tar.gz
3.28 MB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
12.57 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
2.93 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
12.93 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
37.29 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
41.44 kB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.77 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
14.51 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
68.16 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
14.99 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
25.99 MB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
157.62 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
56.49 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
5.43 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
34.12 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
33.16 MB
iCount xlsites
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
4.18 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.16 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
4.35 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
19.06 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
8.44 MB
Paraclu
peaks.bed.gz
27.09 kB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
5.32 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
43.05 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
125.63 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
27.21 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
26.39 MB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
12.86 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
13.13 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
3.32 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
21.60 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
60.74 MB
iCount xlsites
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.54 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
6.16 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
5.95 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
10.31 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
27.61 MB
iCount xlsites
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
4.42 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
13.12 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
7.43 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
34.20 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
7.69 MB
iCount xlsites
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.96 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
49.92 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
10.61 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
17.53 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
11.03 MB
iCount xlsites
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
5.68 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
25.84 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.61 kB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
5.88 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
10.92 MB
iCount xlsites
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
13.18 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
59.85 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.54 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
12.76 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
20.54 MB
iCount xlsites
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
4.19 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
10.67 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
17.48 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
10.93 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
49.78 MB
iCount xlsites
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.14 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
18.27 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
10.57 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
49.28 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
10.94 MB
Cutadapt (single-end)
report.txt
709 B
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
148.05 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
548.83 kB
iCount xlsites
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.58 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
16.19 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
47.61 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
10.47 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
10.19 MB
STAR
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
47.05 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.22 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.bam
1.36 GB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
2.03 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.42 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_fastqc.zip
600.29 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju.fastq.gz
238.64 MB
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_fastqc.zip
490.63 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju.fastq.gz
492.86 MB
stderr.txt
1.44 kB
Paraclu
peaks.bed.gz
44.81 kB
Paraclu
peaks.bed.gz
481.34 kB
Paraclu
peaks.bed.gz
128.32 kB
STAR
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
24.84 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed.bam
1020.82 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.49 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.10 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
iCount RNA-maps
results.tar.gz
3.43 MB
Paraclu
peaks.bed.gz
383.74 kB
iCount RNA-maps
results.tar.gz
3.19 MB
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-3-20190213-ju.fastq.gz
871.03 kB
stderr.txt
1.40 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_fastqc.zip
591.77 kB
Paraclu
peaks.bed.gz
93 B
iCount RNA-maps
results.tar.gz
296.29 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_fastqc.zip
523.87 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju.fastq.gz
248.85 MB
stderr.txt
1.40 kB
iCount summary
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
441 B
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.90 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
iCount summary
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
436 B
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.68 MB
iCount RNA-maps
results.tar.gz
1.94 MB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-3-20190213-ju.fastq.gz
157.26 MB
stderr.txt
1.38 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_fastqc.zip
541.31 kB
iCount summary
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.54 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.38 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_fastqc.zip
505.46 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju.fastq.gz
256.53 MB
iCount summary
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
438 B
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.81 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1017 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.42 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju.fastq.gz
185.56 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_fastqc.zip
497.13 kB
iCount RNA-maps
results.tar.gz
2.32 MB
K-mers
kmer_frequency_ncRNA.tsv
5.89 kB
other_exon region.png
190.20 kB
positional_distribution_intron.tsv
556.52 kB
kmer_frequency_intron.tsv
5.85 kB
kmer_frequency_other_exon.tsv
5.80 kB
intron region.png
177.07 kB
positional_distribution_utr3.tsv
512.55 kB
kmer_frequency_utr3.tsv
5.78 kB
positional_distribution_other_exon.tsv
556.61 kB
ncRNA region.png
227.75 kB
positional_distribution_ncRNA.tsv
563.59 kB
utr3 region.png
231.49 kB
positional_distribution_genome.tsv
568.03 kB
kmer_frequency_genome.tsv
5.88 kB
genome region.png
166.98 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-2-20190213-ju.fastq.gz
144.50 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_fastqc.zip
480.59 kB
stderr.txt
1.42 kB
FASTQ file (single-end)
snrpb-hek293-mild-lysis-wash-1-20190213-ju_fastqc.zip
489.42 kB
fastqc
Directory
snrpb-hek293-mild-lysis-wash-1-20190213-ju.fastq.gz
258.25 MB
stderr.txt
1.42 kB
iCount summary
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.96 MB
Paraclu
peaks.bed.gz
97.99 kB
iCount summary
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
451 B
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1.02 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
2.33 MB
FASTQ file (single-end)
snrpb-hek293-normal-lysis-wash-3-20190213-ju.fastq.gz
141.22 MB
fastqc
Directory
stderr.txt
1.46 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_fastqc.zip
462.39 kB
iCount summary
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
449 B
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
2.20 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
Paraclu
peaks.bed.gz
110.15 kB
K-mers
other_exon region.png
294.43 kB
positional_distribution_intron.tsv
418.83 kB
kmer_frequency_ncRNA.tsv
5.82 kB
ncRNA region.png
280.52 kB
positional_distribution_utr3.tsv
301.58 kB
kmer_frequency_intron.tsv
5.85 kB
intron region.png
315.18 kB
kmer_frequency_utr3.tsv
5.68 kB
kmer_frequency_other_exon.tsv
5.85 kB
utr3 region.png
208.44 kB
kmer_frequency_genome.tsv
5.91 kB
positional_distribution_ncRNA.tsv
517.67 kB
positional_distribution_other_exon.tsv
483.97 kB
genome region.png
305.61 kB
positional_distribution_genome.tsv
556.24 kB
FASTQ file (single-end)
snrpb-hek293-normal-lysis-wash-2-20190213-ju_fastqc.zip
500.78 kB
stderr.txt
1.46 kB
fastqc
Directory
snrpb-hek293-normal-lysis-wash-2-20190213-ju.fastq.gz
155.46 MB
iCount summary
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.83 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
435 B
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1015 B
Paraclu
peaks.bed.gz
43.57 kB
iCount summary
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
440 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1016 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.77 MB
FASTQ file (single-end)
snrpb-hek293-normal-lysis-wash-1-20190213-ju.fastq.gz
62.51 MB
fastqc
Directory
stderr.txt
1.46 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_fastqc.zip
493.06 kB
iCount RNA-maps
results.tar.gz
2.00 MB
iCount summary
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
444 B
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.85 MB
iCount summary
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
442 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1016 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.90 MB
Paraclu
peaks.bed.gz
22.79 kB
iCount RNA-maps
results.tar.gz
1.45 MB
iCount summary
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
440 B
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1014 B
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.56 MB
Paraclu
peaks.bed.gz
103.22 kB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
6.17 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.72 kB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
10.59 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
28.64 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
6.33 MB
iCount RNA-maps
results.tar.gz
2.10 MB
iCount summary
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1014 B
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
438 B
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.60 MB
K-mers
kmer_frequency_intron.tsv
5.79 kB
other_exon region.png
232.73 kB
positional_distribution_ncRNA.tsv
511.38 kB
intron region.png
309.81 kB
positional_distribution_intron.tsv
479.89 kB
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_other_exon.tsv
5.81 kB
ncRNA region.png
280.68 kB
kmer_frequency_ncRNA.tsv
5.77 kB
positional_distribution_utr3.tsv
302.33 kB
kmer_frequency_utr3.tsv
5.63 kB
utr3 region.png
289.47 kB
positional_distribution_other_exon.tsv
544.36 kB
genome region.png
284.17 kB
positional_distribution_genome.tsv
566.09 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
711 B
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
248.86 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
530.34 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
258.58 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
489.73 kB
report.txt
710 B
Cutadapt (single-end)
fastqc
Directory
report.txt
711 B
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
488.82 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
500.78 MB
Cutadapt (single-end)
report.txt
707 B
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
597.33 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
891.99 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
493.92 kB
report.txt
711 B
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
423.47 MB
Cutadapt (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
254.05 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
527.61 kB
report.txt
709 B
Cutadapt (single-end)
fastqc
Directory
report.txt
709 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
188.99 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
625.31 kB
K-mers
other_exon region.png
203.16 kB
kmer_frequency_intron.tsv
5.89 kB
positional_distribution_ncRNA.tsv
542.59 kB
intron region.png
207.88 kB
positional_distribution_intron.tsv
539.56 kB
kmer_frequency_genome.tsv
5.78 kB
positional_distribution_utr3.tsv
434.33 kB
ncRNA region.png
246.96 kB
kmer_frequency_ncRNA.tsv
5.80 kB
positional_distribution_other_exon.tsv
567.65 kB
utr3 region.png
267.38 kB
genome region.png
253.77 kB
kmer_frequency_other_exon.tsv
5.86 kB
kmer_frequency_utr3.tsv
5.78 kB
positional_distribution_genome.tsv
561.41 kB
K-mers
positional_distribution_intron.tsv
556.25 kB
kmer_frequency_ncRNA.tsv
5.90 kB
ncRNA region.png
211.05 kB
other_exon region.png
175.94 kB
kmer_frequency_utr3.tsv
5.80 kB
kmer_frequency_other_exon.tsv
5.83 kB
kmer_frequency_intron.tsv
5.88 kB
utr3 region.png
252.24 kB
positional_distribution_other_exon.tsv
562.56 kB
positional_distribution_utr3.tsv
525.03 kB
positional_distribution_ncRNA.tsv
566.36 kB
positional_distribution_genome.tsv
573.38 kB
intron region.png
195.86 kB
genome region.png
174.40 kB
kmer_frequency_genome.tsv
5.85 kB
K-mers
other_exon region.png
241.29 kB
intron region.png
230.89 kB
positional_distribution_utr3.tsv
347.86 kB
kmer_frequency_utr3.tsv
5.80 kB
positional_distribution_other_exon.tsv
538.55 kB
kmer_frequency_genome.tsv
5.89 kB
kmer_frequency_ncRNA.tsv
5.80 kB
kmer_frequency_other_exon.tsv
5.81 kB
positional_distribution_intron.tsv
448.31 kB
genome region.png
270.39 kB
kmer_frequency_intron.tsv
5.80 kB
utr3 region.png
254.14 kB
positional_distribution_genome.tsv
564.19 kB
positional_distribution_ncRNA.tsv
528.00 kB
ncRNA region.png
258.18 kB
K-mers
other_exon region.png
250.77 kB
kmer_frequency_ncRNA.tsv
5.80 kB
positional_distribution_intron.tsv
408.85 kB
kmer_frequency_utr3.tsv
5.62 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_genome.tsv
555.37 kB
intron region.png
284.85 kB
positional_distribution_ncRNA.tsv
528.85 kB
ncRNA region.png
202.56 kB
kmer_frequency_genome.tsv
5.91 kB
positional_distribution_utr3.tsv
288.94 kB
utr3 region.png
274.76 kB
positional_distribution_other_exon.tsv
401.99 kB
kmer_frequency_other_exon.tsv
5.86 kB
genome region.png
274.22 kB
K-mers
intron region.png
224.81 kB
kmer_frequency_genome.tsv
5.83 kB
other_exon region.png
199.37 kB
kmer_frequency_ncRNA.tsv
5.84 kB
positional_distribution_intron.tsv
530.59 kB
kmer_frequency_utr3.tsv
5.78 kB
ncRNA region.png
218.33 kB
kmer_frequency_intron.tsv
5.87 kB
positional_distribution_utr3.tsv
470.20 kB
positional_distribution_genome.tsv
571.86 kB
positional_distribution_ncRNA.tsv
546.34 kB
utr3 region.png
243.87 kB
genome region.png
199.29 kB
kmer_frequency_other_exon.tsv
5.87 kB
positional_distribution_other_exon.tsv
557.42 kB
K-mers
kmer_frequency_ncRNA.tsv
5.82 kB
kmer_frequency_intron.tsv
5.87 kB
other_exon region.png
209.32 kB
intron region.png
222.07 kB
positional_distribution_ncRNA.tsv
545.38 kB
positional_distribution_utr3.tsv
472.60 kB
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_intron.tsv
525.38 kB
utr3 region.png
239.96 kB
genome region.png
216.74 kB
kmer_frequency_utr3.tsv
5.81 kB
positional_distribution_other_exon.tsv
555.80 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_genome.tsv
570.06 kB
ncRNA region.png
187.45 kB
STAR
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
47.37 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
3.83 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.93 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.bam
1.38 GB
STAR
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
1.46 MB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
739.37 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.78 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bw
18.45 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
3.24 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bam
2.05 MB
STAR
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
3.36 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
91.82 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.bam
2.08 GB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
3.46 MB
STAR
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
3.50 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.82 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
78.92 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.bam
1.87 GB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
3.06 MB
STAR
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.10 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.bam
1.40 GB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
26.79 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.24 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
STAR
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
39.08 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.08 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.bam
1.56 GB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.39 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
STAR
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.46 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
29.77 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.bam
1.14 GB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1002.75 kB
STAR
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
35.36 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.29 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.bam
1.79 GB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.58 MB
STAR
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
38.37 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
1.78 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.bam
1.58 GB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.11 MB
STAR
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.34 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
35.14 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.18 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.bam
787.10 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
STAR
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.bam
1.56 GB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
46.46 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.26 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.08 MB
STAR
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
29.76 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
3.93 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.bam
500.11 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.62 MB
STAR
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
14.45 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.00 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
796.84 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.bam
227.16 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
STAR
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
27.61 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.bam
773.57 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
3.98 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.60 MB
Paraclu
peaks.bed.gz
49.43 kB
FASTQ file (single-end)
snrpb-hepg2-mild-lysis-wash-2-20190213-ju.fastq.gz
150.71 MB
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_fastqc.zip
572.64 kB
stderr.txt
1.40 kB

SNRPB_HEK293_Normal Lysis/Wash 3_20190213_JU

FASTQ file (single-end)
stderr.txt
1.52 kB
fastqc
Directory
snrpb-hek293-normal-lysis-wash-3-20190213-ju.fastq.gz
141.22 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_fastqc.zip
462.40 kB
K-mers
snrpb-hek293-normal-lysis-wash-3-20190213-ju.tar.gz
441.32 kB
iCount summary
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1022 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.93 MB
iCount RNA-maps
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
2.40 MB
Paraclu
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
110.25 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
140.40 MB
STAR
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
29.81 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.62 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.bam
401.45 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
3.92 MB
iCount xlsites
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
4.16 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
17.48 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
10.67 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
10.93 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
49.78 MB

SNRPB_K562_Mild Lysis/Wash 3_20190213_JU

K-mers
snrpb-k562-mild-lysis-wash-3-20190213-ju.tar.gz
368.23 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-3-20190213-ju.fastq.gz
157.26 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_fastqc.zip
541.32 kB
stderr.txt
1.44 kB
iCount summary
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.54 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
iCount RNA-maps
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
1.55 MB
Paraclu
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
27.15 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
161.15 MB
STAR
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.bam
905.15 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.46 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
29.82 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1002.75 kB
iCount xlsites
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
4.18 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
8.44 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.13 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
19.06 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
4.35 MB

SNRPB_HEK293_Normal Lysis/Wash 1_20190213_JU

FASTQ file (single-end)
stderr.txt
1.52 kB
fastqc
Directory
snrpb-hek293-normal-lysis-wash-1-20190213-ju.fastq.gz
62.51 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_fastqc.zip
493.07 kB
K-mers
snrpb-hek293-normal-lysis-wash-1-20190213-ju.tar.gz
366.98 kB
iCount RNA-maps
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
1.45 MB
Paraclu
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
22.87 kB
Cutadapt (single-end)
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
58.38 MB
report.txt
680 B
fastqc
Directory
STAR
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.00 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.bam
182.17 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
14.47 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
796.84 kB
iCount xlsites
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
4.02 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
3.38 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
6.94 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
4.13 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
18.27 MB
iCount summary
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
440 B
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.56 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1014 B

SNRPB_HepG2_Mild Lysis/Wash 3_20190213_JU

FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-3-20190213-ju.fastq.gz
871.03 kB
stderr.txt
1.46 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_fastqc.zip
591.78 kB
K-mers
snrpb-hepg2-mild-lysis-wash-3-20190213-ju.tar.gz
145 B
Cutadapt (single-end)
report.txt
676 B
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
894.75 kB
STAR
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
1.46 MB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bam
1.59 MB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
741.71 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bw
18.45 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.78 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
3.24 kB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
37.29 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
2.90 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
12.93 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
12.57 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
41.44 kB
iCount summary
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
752 B
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
402 B
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
86.63 kB
iCount RNA-maps
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
297.18 kB
Paraclu
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
150 B

SNRPB_HEK293_Normal Lysis/Wash 2_20190213_JU

iCount xlsites
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
10.19 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.55 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
16.19 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
47.61 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
10.47 MB
K-mers
snrpb-hek293-normal-lysis-wash-2-20190213-ju.tar.gz
436.54 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-normal-lysis-wash-2-20190213-ju.fastq.gz
155.46 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_fastqc.zip
500.79 kB
stderr.txt
1.52 kB
iCount summary
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1016 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
442 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.90 MB
iCount RNA-maps
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
2.37 MB
Paraclu
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
103.34 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
157.35 MB
STAR
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.bam
607.94 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
27.66 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.60 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
3.98 MB

SNRPB_HEK293_Mild Lysis/Wash 2_20190213_JU

Cutadapt (single-end)
report.txt
678 B
fastqc
Directory
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
140.42 MB
iCount RNA-maps
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
2.00 MB
Paraclu
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
25.80 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-2-20190213-ju.fastq.gz
144.50 MB
stderr.txt
1.48 kB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_fastqc.zip
480.60 kB
iCount summary
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1016 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
440 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.77 MB
K-mers
snrpb-hek293-mild-lysis-wash-2-20190213-ju.tar.gz
376.08 kB
STAR
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
35.19 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.34 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.18 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.bam
615.00 MB
iCount xlsites
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.58 kB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
10.92 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
5.88 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
25.84 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
5.68 MB

SNRPB_HEK293_Mild Lysis/Wash 1_20190213_JU

FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-1-20190213-ju_fastqc.zip
489.43 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju.fastq.gz
258.25 MB
stderr.txt
1.48 kB
iCount summary
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.96 MB
iCount RNA-maps
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
2.85 MB
K-mers
snrpb-hek293-mild-lysis-wash-1-20190213-ju.tar.gz
432.42 kB
Paraclu
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
98.15 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
259.01 MB
STAR
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
46.52 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.25 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.bam
1.21 GB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.08 MB
iCount xlsites
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
18.27 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.11 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
49.28 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
10.57 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
10.94 MB

SNRPB_K562_Mild Lysis/Wash 1_20190213_JU

FASTQ file (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-1-20190213-ju.fastq.gz
579.79 MB
stderr.txt
1.44 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_fastqc.zip
531.33 kB
iCount summary
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
446 B
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
2.19 MB
iCount RNA-maps
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
3.28 MB
Paraclu
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
317.16 kB
K-mers
snrpb-k562-mild-lysis-wash-1-20190213-ju.tar.gz
497.98 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
590.70 MB
STAR
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.23 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.bam
2.93 GB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.94 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.82 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
102.37 MB
iCount xlsites
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.04 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
93.10 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
20.33 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
19.70 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
37.78 MB

SNRPB_K562_Mild Lysis/Wash 2_20190213_JU

STAR
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.20 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
2.03 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
47.13 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.bam
1.06 GB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-2-20190213-ju.fastq.gz
256.53 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_fastqc.zip
505.47 kB
stderr.txt
1.51 kB
iCount summary
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
438 B
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1017 B
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.81 MB
iCount RNA-maps
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
2.48 MB
K-mers
snrpb-k562-mild-lysis-wash-2-20190213-ju.tar.gz
450.46 kB
Paraclu
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
147.76 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
260.54 MB
report.txt
676 B
iCount xlsites
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
49.92 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
10.61 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.93 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
17.53 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
11.03 MB

SNRPB_K562_Normal Lysis/Wash 2_20190213_JU

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.48 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju.fastq.gz
238.64 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_fastqc.zip
600.30 kB
iCount RNA-maps
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
1.80 MB
Paraclu
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
71.09 kB
K-mers
snrpb-k562-normal-lysis-wash-2-20190213-ju.tar.gz
429.30 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
246.07 MB
STAR
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
35.42 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.27 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.bam
1.40 GB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.58 MB
iCount xlsites
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.22 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
13.79 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
7.84 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
36.61 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
8.13 MB
iCount summary
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
436 B
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.68 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB

SNRPB_K562_Normal Lysis/Wash 3_20190213_JU

iCount summary
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
439 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1021 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.55 MB
iCount RNA-maps
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
1.56 MB
iCount xlsites
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
10.31 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.51 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
5.95 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
6.16 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
27.61 MB
K-mers
snrpb-k562-normal-lysis-wash-3-20190213-ju.tar.gz
411.05 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-normal-lysis-wash-3-20190213-ju.fastq.gz
183.41 MB
stderr.txt
1.48 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju_fastqc.zip
623.55 kB
Paraclu
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
44.92 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
678 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
189.44 MB
STAR
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.09 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
26.83 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.bam
1.09 GB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.24 MB

SNRPB_HepG2_Mild Lysis/Wash 1_20190213_JU

K-mers
snrpb-hepg2-mild-lysis-wash-1-20190213-ju.tar.gz
459.41 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_fastqc.zip
523.89 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju.fastq.gz
248.85 MB
stderr.txt
1.46 kB
iCount RNA-maps
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
2.95 MB
Cutadapt (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
254.52 MB
report.txt
677 B
STAR
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
39.14 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.bam
1.21 GB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.39 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.07 MB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
12.86 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
3.29 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
13.13 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
21.60 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
60.74 MB
Paraclu
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
179.88 kB
iCount summary
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.90 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
441 B

SNRPB_HepG2_Normal Lysis/Wash 1_20190213_JU

iCount RNA-maps
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
3.19 MB
K-mers
snrpb-hepg2-normal-lysis-wash-1-20190213-ju.tar.gz
512.43 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.50 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju.fastq.gz
415.70 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_fastqc.zip
486.90 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
424.18 MB
report.txt
679 B
STAR
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
3.46 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
79.04 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.82 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
3.06 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.bam
1.47 GB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
5.29 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
43.05 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
26.39 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
27.21 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
125.63 MB
iCount summary
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
449 B
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
2.20 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
Paraclu
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
384.19 kB

SNRPB_HepG2_Normal Lysis/Wash 2_20190213_JU

iCount RNA-maps
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.tar.gz
3.43 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.50 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju.fastq.gz
492.86 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_fastqc.zip
490.65 kB
Cutadapt (single-end)
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
501.56 MB
fastqc
Directory
report.txt
679 B
K-mers
snrpb-hepg2-normal-lysis-wash-2-20190213-ju.tar.gz
535.68 kB
Paraclu
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_peaks.bed.gz
482.08 kB
STAR
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.bam
1.64 GB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
3.30 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
3.46 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
91.95 MB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
5.40 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
34.12 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
56.49 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
157.62 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
33.16 MB
iCount summary
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
451 B
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
2.33 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1.02 kB

SNRPB_HepG2_Normal Lysis/Wash 3_20190213_JU

FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_fastqc.zip
526.23 kB
stderr.txt
1.50 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju.fastq.gz
243.97 MB
iCount summary
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
444 B
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.96 MB
iCount RNA-maps
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.tar.gz
2.41 MB
K-mers
snrpb-hepg2-normal-lysis-wash-3-20190213-ju.tar.gz
467.10 kB
Paraclu
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_peaks.bed.gz
128.40 kB
Cutadapt (single-end)
report.txt
679 B
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
249.33 MB
STAR
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.bam
1.08 GB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
47.44 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
3.82 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.93 MB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.74 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
14.99 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
25.99 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
14.51 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
68.16 MB

SNRPB_HepG2_Normal Lysis/Wash 2_20190213_JU

iCount xlsites
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
157.62 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
56.49 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
5.43 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
34.12 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
33.16 MB
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_fastqc.zip
490.63 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju.fastq.gz
492.86 MB
stderr.txt
1.44 kB
Paraclu
peaks.bed.gz
481.34 kB
iCount RNA-maps
results.tar.gz
3.43 MB
iCount summary
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
451 B
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1.02 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
2.33 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
711 B
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
488.82 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
500.78 MB
K-mers
positional_distribution_intron.tsv
556.25 kB
kmer_frequency_ncRNA.tsv
5.90 kB
ncRNA region.png
211.05 kB
other_exon region.png
175.94 kB
kmer_frequency_utr3.tsv
5.80 kB
kmer_frequency_other_exon.tsv
5.83 kB
kmer_frequency_intron.tsv
5.88 kB
utr3 region.png
252.24 kB
positional_distribution_other_exon.tsv
562.56 kB
positional_distribution_utr3.tsv
525.03 kB
positional_distribution_ncRNA.tsv
566.36 kB
positional_distribution_genome.tsv
573.38 kB
intron region.png
195.86 kB
genome region.png
174.40 kB
kmer_frequency_genome.tsv
5.85 kB
STAR
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
3.36 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
91.82 MB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed.bam
2.08 GB
snrpb-hepg2-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
3.46 MB

SNRPB_HepG2_Mild Lysis/Wash 3_20190213_JU

iCount summary
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
402 B
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
752 B
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
86.63 kB
K-mers
positional_distribution_ncRNA.tsv
35.61 kB
kmer_frequency_ncRNA.tsv
676 B
kmer_frequency_genome.tsv
715 B
ncRNA region.png
166.87 kB
genome region.png
167.89 kB
positional_distribution_genome.tsv
35.61 kB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
12.57 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
2.93 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
12.93 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
37.29 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
41.44 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-3-20190213-ju.fastq.gz
871.03 kB
stderr.txt
1.40 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_fastqc.zip
591.77 kB
Paraclu
peaks.bed.gz
93 B
iCount RNA-maps
results.tar.gz
296.29 kB
Cutadapt (single-end)
report.txt
707 B
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
597.33 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
891.99 kB
STAR
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
1.46 MB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
739.37 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.78 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bw
18.45 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
3.24 kB
snrpb-hepg2-mild-lysis-wash-3-20190213-ju_trimmed.bam
2.05 MB

SNRPB_K562_Mild Lysis/Wash 1_20190213_JU

STAR
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.27 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.bam
3.78 GB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.82 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.94 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
102.21 MB
K-mers
kmer_frequency_ncRNA.tsv
5.89 kB
positional_distribution_intron.tsv
566.17 kB
ncRNA region.png
192.73 kB
other_exon region.png
200.25 kB
kmer_frequency_intron.tsv
5.81 kB
intron region.png
209.56 kB
kmer_frequency_utr3.tsv
5.86 kB
utr3 region.png
249.06 kB
positional_distribution_ncRNA.tsv
566.39 kB
kmer_frequency_genome.tsv
5.90 kB
positional_distribution_genome.tsv
569.76 kB
kmer_frequency_other_exon.tsv
5.82 kB
positional_distribution_other_exon.tsv
557.79 kB
positional_distribution_utr3.tsv
532.73 kB
genome region.png
194.11 kB
FASTQ file (single-end)
snrpb-k562-mild-lysis-wash-1-20190213-ju.fastq.gz
579.79 MB
fastqc
Directory
stderr.txt
1.38 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_fastqc.zip
531.32 kB
iCount summary
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
446 B
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
2.19 MB
iCount xlsites
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
19.70 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.07 kB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
20.33 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
37.78 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
93.10 MB
Paraclu
peaks.bed.gz
316.82 kB
Cutadapt (single-end)
report.txt
708 B
fastqc
Directory
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
589.67 MB
snrpb-k562-mild-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
535.80 kB
iCount RNA-maps
results.tar.gz
3.28 MB

SNRPB_HEK293_Mild Lysis/Wash 2_20190213_JU

Paraclu
peaks.bed.gz
25.69 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
140.21 MB
report.txt
709 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
479.78 kB
iCount xlsites
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
5.68 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
25.84 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.61 kB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
5.88 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
10.92 MB
FASTQ file (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-2-20190213-ju.fastq.gz
144.50 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_fastqc.zip
480.59 kB
stderr.txt
1.42 kB
iCount summary
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
440 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1016 B
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.77 MB
iCount RNA-maps
results.tar.gz
2.00 MB
K-mers
other_exon region.png
250.77 kB
kmer_frequency_ncRNA.tsv
5.80 kB
positional_distribution_intron.tsv
408.85 kB
kmer_frequency_utr3.tsv
5.62 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_genome.tsv
555.37 kB
intron region.png
284.85 kB
positional_distribution_ncRNA.tsv
528.85 kB
ncRNA region.png
202.56 kB
kmer_frequency_genome.tsv
5.91 kB
positional_distribution_utr3.tsv
288.94 kB
utr3 region.png
274.76 kB
positional_distribution_other_exon.tsv
401.99 kB
kmer_frequency_other_exon.tsv
5.86 kB
genome region.png
274.22 kB
STAR
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.34 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
35.14 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.18 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed.bam
787.10 MB
snrpb-hek293-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB

SNRPB_HEK293_Normal Lysis/Wash 1_20190213_JU

iCount xlsites
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
3.41 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
4.13 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
4.02 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
6.94 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
18.27 MB
K-mers
other_exon region.png
261.70 kB
kmer_frequency_intron.tsv
5.82 kB
positional_distribution_ncRNA.tsv
525.23 kB
kmer_frequency_utr3.tsv
5.47 kB
positional_distribution_utr3.tsv
313.03 kB
positional_distribution_intron.tsv
396.22 kB
positional_distribution_genome.tsv
546.08 kB
utr3 region.png
236.49 kB
kmer_frequency_other_exon.tsv
5.84 kB
intron region.png
191.76 kB
genome region.png
227.85 kB
ncRNA region.png
226.42 kB
positional_distribution_other_exon.tsv
407.49 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.82 kB
Cutadapt (single-end)
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
58.30 MB
fastqc
Directory
report.txt
712 B
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
495.72 kB
FASTQ file (single-end)
snrpb-hek293-normal-lysis-wash-1-20190213-ju.fastq.gz
62.51 MB
fastqc
Directory
stderr.txt
1.46 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_fastqc.zip
493.06 kB
Paraclu
peaks.bed.gz
22.79 kB
iCount RNA-maps
results.tar.gz
1.45 MB
iCount summary
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
440 B
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1014 B
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.56 MB
STAR
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
14.45 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.00 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
796.84 kB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed.bam
227.16 MB
snrpb-hek293-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB

SNRPB_K562_Normal Lysis/Wash 1_20190213_JU

FASTQ file (single-end)
fastqc
Directory
snrpb-k562-normal-lysis-wash-1-20190213-ju.fastq.gz
255.99 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_fastqc.zip
540.23 kB
stderr.txt
1.48 kB
iCount RNA-maps
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.tar.gz
1.94 MB
Paraclu
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_peaks.bed.gz
97.82 kB
K-mers
snrpb-k562-normal-lysis-wash-1-20190213-ju.tar.gz
453.37 kB
Cutadapt (single-end)
report.txt
678 B
fastqc
Directory
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
263.16 MB
STAR
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
38.43 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.10 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.bam
1.23 GB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
1.78 MB
iCount xlsites
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.51 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
12.76 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
13.18 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
20.54 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
59.85 MB
iCount summary
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
444 B
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.85 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB

SNRPB_HEK293_Normal Lysis/Wash 2_20190213_JU

iCount RNA-maps
results.tar.gz
2.37 MB
Cutadapt (single-end)
fastqc
Directory
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
505.43 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
157.08 MB
report.txt
711 B
iCount xlsites
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.58 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
16.19 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
47.61 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
10.47 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
10.19 MB
FASTQ file (single-end)
snrpb-hek293-normal-lysis-wash-2-20190213-ju_fastqc.zip
500.78 kB
stderr.txt
1.46 kB
fastqc
Directory
snrpb-hek293-normal-lysis-wash-2-20190213-ju.fastq.gz
155.46 MB
iCount summary
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
442 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1016 B
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.90 MB
Paraclu
peaks.bed.gz
103.22 kB
K-mers
kmer_frequency_ncRNA.tsv
5.82 kB
kmer_frequency_intron.tsv
5.87 kB
other_exon region.png
209.32 kB
intron region.png
222.07 kB
positional_distribution_ncRNA.tsv
545.38 kB
positional_distribution_utr3.tsv
472.60 kB
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_intron.tsv
525.38 kB
utr3 region.png
239.96 kB
genome region.png
216.74 kB
kmer_frequency_utr3.tsv
5.81 kB
positional_distribution_other_exon.tsv
555.80 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_genome.tsv
570.06 kB
ncRNA region.png
187.45 kB
STAR
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
27.61 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.bam
773.57 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
3.98 MB
snrpb-hek293-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.60 MB

SNRPB_HEK293_Normal Lysis/Wash 3_20190213_JU

iCount summary
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.93 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1022 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
443 B
iCount RNA-maps
results.tar.gz
2.40 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
711 B
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
140.22 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
463.75 kB
iCount xlsites
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
4.19 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
10.67 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
17.48 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
10.93 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
49.78 MB
FASTQ file (single-end)
snrpb-hek293-normal-lysis-wash-3-20190213-ju.fastq.gz
141.22 MB
fastqc
Directory
stderr.txt
1.46 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_fastqc.zip
462.39 kB
Paraclu
peaks.bed.gz
110.15 kB
K-mers
intron region.png
224.81 kB
kmer_frequency_genome.tsv
5.83 kB
other_exon region.png
199.37 kB
kmer_frequency_ncRNA.tsv
5.84 kB
positional_distribution_intron.tsv
530.59 kB
kmer_frequency_utr3.tsv
5.78 kB
ncRNA region.png
218.33 kB
kmer_frequency_intron.tsv
5.87 kB
positional_distribution_utr3.tsv
470.20 kB
positional_distribution_genome.tsv
571.86 kB
positional_distribution_ncRNA.tsv
546.34 kB
utr3 region.png
243.87 kB
genome region.png
199.29 kB
kmer_frequency_other_exon.tsv
5.87 kB
positional_distribution_other_exon.tsv
557.42 kB
STAR
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
29.76 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
3.93 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed.bam
500.11 MB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.62 MB

SNRPB_HEK293_Mild Lysis/Wash 3_20190213_JU

STAR
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
33.17 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.34 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.53 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.bam
1.17 GB
Cutadapt (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
186.82 MB
report.txt
709 B
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
498.99 kB
iCount xlsites
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
4.42 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
13.12 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
7.43 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
34.20 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
7.69 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.42 kB
snrpb-hek293-mild-lysis-wash-3-20190213-ju.fastq.gz
185.56 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_fastqc.zip
497.13 kB
iCount RNA-maps
results.tar.gz
2.32 MB
iCount summary
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.83 MB
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
435 B
snrpb-hek293-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1015 B
Paraclu
peaks.bed.gz
43.57 kB
K-mers
positional_distribution_intron.tsv
462.90 kB
ncRNA region.png
204.03 kB
kmer_frequency_intron.tsv
5.81 kB
positional_distribution_ncRNA.tsv
535.62 kB
kmer_frequency_ncRNA.tsv
5.81 kB
intron region.png
295.54 kB
kmer_frequency_utr3.tsv
5.68 kB
positional_distribution_utr3.tsv
342.25 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_other_exon.tsv
502.99 kB
positional_distribution_genome.tsv
565.28 kB
other_exon region.png
267.20 kB
utr3 region.png
270.65 kB
kmer_frequency_genome.tsv
5.92 kB
genome region.png
256.64 kB

SNRPB_K562_Mild Lysis/Wash 2_20190213_JU

Paraclu
peaks.bed.gz
147.65 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
507.75 kB
report.txt
708 B
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
260.12 MB
K-mers
kmer_frequency_intron.tsv
5.88 kB
positional_distribution_ncRNA.tsv
547.77 kB
intron region.png
202.81 kB
kmer_frequency_genome.tsv
5.78 kB
kmer_frequency_ncRNA.tsv
5.84 kB
positional_distribution_intron.tsv
548.32 kB
utr3 region.png
252.14 kB
other_exon region.png
221.81 kB
kmer_frequency_utr3.tsv
5.81 kB
kmer_frequency_other_exon.tsv
5.87 kB
ncRNA region.png
249.79 kB
positional_distribution_utr3.tsv
467.96 kB
positional_distribution_genome.tsv
558.48 kB
positional_distribution_other_exon.tsv
568.78 kB
genome region.png
217.28 kB
iCount xlsites
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.96 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
49.92 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
10.61 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
17.53 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
11.03 MB
STAR
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
47.05 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.22 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed.bam
1.36 GB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
2.03 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.38 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju_fastqc.zip
505.46 kB
snrpb-k562-mild-lysis-wash-2-20190213-ju.fastq.gz
256.53 MB
iCount summary
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
438 B
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.81 MB
snrpb-k562-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1017 B
iCount RNA-maps
results.tar.gz
2.48 MB

SNRPB_K562_Mild Lysis/Wash 3_20190213_JU

iCount RNA-maps
results.tar.gz
1.55 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
707 B
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.fastq.gz
160.83 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
542.87 kB
iCount xlsites
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
4.18 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.16 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
4.35 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
19.06 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
8.44 MB
Paraclu
peaks.bed.gz
27.09 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-mild-lysis-wash-3-20190213-ju.fastq.gz
157.26 MB
stderr.txt
1.38 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_fastqc.zip
541.31 kB
iCount summary
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.54 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
K-mers
other_exon region.png
294.43 kB
positional_distribution_intron.tsv
418.83 kB
kmer_frequency_ncRNA.tsv
5.82 kB
ncRNA region.png
280.52 kB
positional_distribution_utr3.tsv
301.58 kB
kmer_frequency_intron.tsv
5.85 kB
intron region.png
315.18 kB
kmer_frequency_utr3.tsv
5.68 kB
kmer_frequency_other_exon.tsv
5.85 kB
utr3 region.png
208.44 kB
kmer_frequency_genome.tsv
5.91 kB
positional_distribution_ncRNA.tsv
517.67 kB
positional_distribution_other_exon.tsv
483.97 kB
genome region.png
305.61 kB
positional_distribution_genome.tsv
556.24 kB
STAR
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.46 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
29.77 MB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed.bam
1.14 GB
snrpb-k562-mild-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1002.75 kB

SNRPB_K562_Normal Lysis/Wash 2_20190213_JU

Paraclu
peaks.bed.gz
71.00 kB
iCount xlsites
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.25 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
13.79 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
7.84 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
8.13 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
36.61 MB
K-mers
other_exon region.png
214.03 kB
positional_distribution_intron.tsv
500.15 kB
kmer_frequency_intron.tsv
5.79 kB
ncRNA region.png
249.98 kB
kmer_frequency_ncRNA.tsv
5.77 kB
kmer_frequency_utr3.tsv
5.85 kB
positional_distribution_ncRNA.tsv
534.00 kB
intron region.png
234.89 kB
positional_distribution_utr3.tsv
413.70 kB
positional_distribution_genome.tsv
570.58 kB
kmer_frequency_other_exon.tsv
5.83 kB
kmer_frequency_genome.tsv
5.84 kB
genome region.png
254.77 kB
positional_distribution_other_exon.tsv
559.08 kB
utr3 region.png
247.68 kB
iCount RNA-maps
results.tar.gz
1.80 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
710 B
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.fastq.gz
245.49 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
603.66 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.42 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_fastqc.zip
600.29 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju.fastq.gz
238.64 MB
iCount summary
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
436 B
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.68 MB
STAR
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
35.36 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.29 MB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed.bam
1.79 GB
snrpb-k562-normal-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.58 MB

SNRPB_HepG2_Mild Lysis/Wash 1_20190213_JU

iCount RNA-maps
results.tar.gz
2.95 MB
Paraclu
peaks.bed.gz
179.60 kB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
12.86 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
13.13 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
3.32 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
21.60 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
60.74 MB
FASTQ file (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_fastqc.zip
523.87 kB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju.fastq.gz
248.85 MB
stderr.txt
1.40 kB
iCount summary
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
441 B
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.90 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
254.05 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
527.61 kB
report.txt
709 B
K-mers
kmer_frequency_ncRNA.tsv
5.86 kB
positional_distribution_intron.tsv
558.56 kB
positional_distribution_utr3.tsv
461.44 kB
other_exon region.png
205.16 kB
positional_distribution_other_exon.tsv
569.51 kB
utr3 region.png
281.63 kB
kmer_frequency_other_exon.tsv
5.83 kB
intron region.png
190.86 kB
kmer_frequency_intron.tsv
5.86 kB
kmer_frequency_utr3.tsv
5.81 kB
ncRNA region.png
201.52 kB
genome region.png
218.37 kB
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_genome.tsv
557.26 kB
positional_distribution_ncRNA.tsv
551.63 kB
STAR
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
39.08 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.08 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed.bam
1.56 GB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.39 MB
snrpb-hepg2-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB

SNRPB_HepG2_Normal Lysis/Wash 1_20190213_JU

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.44 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju.fastq.gz
415.70 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_fastqc.zip
486.89 kB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
5.32 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
43.05 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
125.63 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
27.21 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
26.39 MB
Paraclu
peaks.bed.gz
383.74 kB
iCount RNA-maps
results.tar.gz
3.19 MB
K-mers
kmer_frequency_ncRNA.tsv
5.89 kB
other_exon region.png
190.20 kB
positional_distribution_intron.tsv
556.52 kB
kmer_frequency_intron.tsv
5.85 kB
kmer_frequency_other_exon.tsv
5.80 kB
intron region.png
177.07 kB
positional_distribution_utr3.tsv
512.55 kB
kmer_frequency_utr3.tsv
5.78 kB
positional_distribution_other_exon.tsv
556.61 kB
ncRNA region.png
227.75 kB
positional_distribution_ncRNA.tsv
563.59 kB
utr3 region.png
231.49 kB
positional_distribution_genome.tsv
568.03 kB
kmer_frequency_genome.tsv
5.88 kB
genome region.png
166.98 kB
iCount summary
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
449 B
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
2.20 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
493.92 kB
report.txt
711 B
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
423.47 MB
STAR
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
3.50 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.82 kB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
78.92 MB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed.bam
1.87 GB
snrpb-hepg2-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
3.06 MB

SNRPB_HepG2_Mild Lysis/Wash_2_20190213_JU

Cutadapt (single-end)
report.txt
709 B
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed.fastq.gz
148.05 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_fastqc.zip
548.83 kB
STAR
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
24.84 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed.bam
1020.82 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_SJ.out.tab
1.49 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed.bam.bai
4.10 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_stats.txt
1.81 kB
iCount xlsites
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single.bed.gz
6.17 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_skipped.bam
3.72 kB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_singleAndMulti.bed.gz
10.59 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single.bedgraph
28.64 MB
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_reads_single.bed.gz
6.33 MB
iCount RNA-maps
results.tar.gz
2.10 MB
iCount summary
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_subtype.tsv
1014 B
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_type.tsv
438 B
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_trimmed_single_summary_gene.tsv
1.60 MB
K-mers
kmer_frequency_intron.tsv
5.79 kB
other_exon region.png
232.73 kB
positional_distribution_ncRNA.tsv
511.38 kB
intron region.png
309.81 kB
positional_distribution_intron.tsv
479.89 kB
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_other_exon.tsv
5.81 kB
ncRNA region.png
280.68 kB
kmer_frequency_ncRNA.tsv
5.77 kB
positional_distribution_utr3.tsv
302.33 kB
kmer_frequency_utr3.tsv
5.63 kB
utr3 region.png
289.47 kB
positional_distribution_other_exon.tsv
544.36 kB
genome region.png
284.17 kB
positional_distribution_genome.tsv
566.09 kB
Paraclu
peaks.bed.gz
49.43 kB
FASTQ file (single-end)
snrpb-hepg2-mild-lysis-wash-2-20190213-ju.fastq.gz
150.71 MB
fastqc
Directory
snrpb-hepg2-mild-lysis-wash-2-20190213-ju_fastqc.zip
572.64 kB
stderr.txt
1.40 kB

SNRPB_HepG2_Normal Lysis/Wash 3_20190213_JU

iCount RNA-maps
results.tar.gz
2.41 MB
iCount summary
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.96 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1.01 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
444 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.44 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju.fastq.gz
243.97 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_fastqc.zip
526.21 kB
iCount xlsites
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.77 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
14.51 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
68.16 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
14.99 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
25.99 MB
Paraclu
peaks.bed.gz
128.32 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
711 B
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
248.86 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
530.34 kB
K-mers
other_exon region.png
203.16 kB
kmer_frequency_intron.tsv
5.89 kB
positional_distribution_ncRNA.tsv
542.59 kB
intron region.png
207.88 kB
positional_distribution_intron.tsv
539.56 kB
kmer_frequency_genome.tsv
5.78 kB
positional_distribution_utr3.tsv
434.33 kB
ncRNA region.png
246.96 kB
kmer_frequency_ncRNA.tsv
5.80 kB
positional_distribution_other_exon.tsv
567.65 kB
utr3 region.png
267.38 kB
genome region.png
253.77 kB
kmer_frequency_other_exon.tsv
5.86 kB
kmer_frequency_utr3.tsv
5.78 kB
positional_distribution_genome.tsv
561.41 kB
STAR
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
47.37 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
3.83 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.93 MB
snrpb-hepg2-normal-lysis-wash-3-20190213-ju_trimmed.bam
1.38 GB

SNRPB_K562_Normal Lysis/Wash 3_20190213_JU

iCount RNA-maps
results.tar.gz
1.56 MB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-normal-lysis-wash-3-20190213-ju_fastqc.zip
623.53 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju.fastq.gz
183.41 MB
stderr.txt
1.42 kB
iCount summary
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_type.tsv
439 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_subtype.tsv
1021 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single_summary_gene.tsv
1.55 MB
iCount xlsites
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_skipped.bam
3.54 kB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_reads_single.bed.gz
6.16 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.bed.gz
5.95 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_singleAndMulti.bed.gz
10.31 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_single.bedgraph
27.61 MB
Paraclu
peaks.bed.gz
44.81 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
709 B
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.fastq.gz
188.99 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_fastqc.zip
625.31 kB
K-mers
other_exon region.png
241.29 kB
intron region.png
230.89 kB
positional_distribution_utr3.tsv
347.86 kB
kmer_frequency_utr3.tsv
5.80 kB
positional_distribution_other_exon.tsv
538.55 kB
kmer_frequency_genome.tsv
5.89 kB
kmer_frequency_ncRNA.tsv
5.80 kB
kmer_frequency_other_exon.tsv
5.81 kB
positional_distribution_intron.tsv
448.31 kB
genome region.png
270.39 kB
kmer_frequency_intron.tsv
5.80 kB
utr3 region.png
254.14 kB
positional_distribution_genome.tsv
564.19 kB
positional_distribution_ncRNA.tsv
528.00 kB
ncRNA region.png
258.18 kB
STAR
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.bam.bai
4.10 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed.bam
1.40 GB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
26.79 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_SJ.out.tab
1.24 MB
snrpb-k562-normal-lysis-wash-3-20190213-ju_trimmed_stats.txt
1.81 kB

SNRPB_K562_Normal Lysis/Wash 1_20190213_JU

Paraclu
peaks.bed.gz
97.68 kB
FASTQ file (single-end)
fastqc
Directory
snrpb-k562-normal-lysis-wash-1-20190213-ju.fastq.gz
255.99 MB
stderr.txt
1.42 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_fastqc.zip
540.22 kB
Cutadapt (single-end)
report.txt
710 B
fastqc
Directory
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.fastq.gz
262.63 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
548.25 kB
K-mers
kmer_frequency_ncRNA.tsv
5.79 kB
other_exon region.png
231.07 kB
positional_distribution_intron.tsv
523.71 kB
intron region.png
251.87 kB
kmer_frequency_utr3.tsv
5.80 kB
positional_distribution_utr3.tsv
362.63 kB
kmer_frequency_genome.tsv
5.83 kB
ncRNA region.png
264.23 kB
kmer_frequency_intron.tsv
5.89 kB
utr3 region.png
252.68 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_genome.tsv
572.43 kB
genome region.png
231.77 kB
positional_distribution_other_exon.tsv
557.97 kB
positional_distribution_ncRNA.tsv
534.16 kB
iCount xlsites
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
13.18 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
59.85 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.54 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
12.76 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
20.54 MB
iCount RNA-maps
results.tar.gz
1.94 MB
iCount summary
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
444 B
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.85 MB
STAR
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
38.37 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
1.78 MB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.bam
1.58 GB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-k562-normal-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.11 MB

SNRPB_HEK293_Mild Lysis/Wash 1_20190213_JU

iCount RNA-maps
results.tar.gz
2.85 MB
K-mers
other_exon region.png
219.52 kB
kmer_frequency_intron.tsv
5.87 kB
positional_distribution_ncRNA.tsv
548.14 kB
intron region.png
253.82 kB
positional_distribution_intron.tsv
524.33 kB
ncRNA region.png
200.95 kB
kmer_frequency_genome.tsv
5.84 kB
positional_distribution_utr3.tsv
425.63 kB
kmer_frequency_ncRNA.tsv
5.82 kB
utr3 region.png
248.50 kB
kmer_frequency_utr3.tsv
5.77 kB
genome region.png
228.54 kB
kmer_frequency_other_exon.tsv
5.84 kB
positional_distribution_genome.tsv
575.80 kB
positional_distribution_other_exon.tsv
550.99 kB
iCount xlsites
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_skipped.bam
4.14 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_singleAndMulti.bed.gz
18.27 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.bed.gz
10.57 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single.bedgraph
49.28 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_reads_single.bed.gz
10.94 MB
FASTQ file (single-end)
snrpb-hek293-mild-lysis-wash-1-20190213-ju_fastqc.zip
489.42 kB
fastqc
Directory
snrpb-hek293-mild-lysis-wash-1-20190213-ju.fastq.gz
258.25 MB
stderr.txt
1.42 kB
iCount summary
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_type.tsv
443 B
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_subtype.tsv
1.00 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_single_summary_gene.tsv
1.96 MB
Paraclu
peaks.bed.gz
97.99 kB
Cutadapt (single-end)
fastqc
Directory
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.fastq.gz
258.58 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_fastqc.zip
489.73 kB
report.txt
710 B
STAR
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.bam
1.56 GB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_unmapped.out.mate1.fastq.gz
46.46 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed.bam.bai
4.26 MB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_stats.txt
1.81 kB
snrpb-hek293-mild-lysis-wash-1-20190213-ju_trimmed_SJ.out.tab
2.08 MB