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Folder iconSDMA iCLIP

Paulo Gameiro
April 18, 2019
Protein Arginine Methyltransferase-5 (PRMT5) is an arginine methyltransferase that catalyses the symmetric dimethylation of arginine (SDMA) residues on both histone and non-histone proteins. This collection contains iCLIP datasets of SDMA-modified RNA-binding proteins obtained from cells treated with different PRMT5 inhibitors or vehicle-control (DMSO).

No Sample

FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
559.36 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
9.02 MB
stderr.txt
1.58 kB
K-mers
ncRNA region.png
268.52 kB
intron region.png
183.15 kB
positional_distribution_intron.tsv
212.37 kB
kmer_frequency_intron.tsv
5.40 kB
kmer_frequency_genome.tsv
5.87 kB
positional_distribution_ncRNA.tsv
330.18 kB
other_exon region.png
160.18 kB
kmer_frequency_utr3.tsv
2.47 kB
kmer_frequency_ncRNA.tsv
5.82 kB
utr3 region.png
127.47 kB
kmer_frequency_other_exon.tsv
2.87 kB
positional_distribution_genome.tsv
425.32 kB
positional_distribution_other_exon.tsv
117.22 kB
positional_distribution_utr3.tsv
113.30 kB
genome region.png
234.10 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
28.37 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
589.91 kB
K-mers
kmer_frequency_utr3.tsv
5.35 kB
positional_distribution_intron.tsv
418.65 kB
other_exon region.png
253.25 kB
ncRNA region.png
266.12 kB
kmer_frequency_ncRNA.tsv
5.83 kB
kmer_frequency_intron.tsv
5.80 kB
intron region.png
251.88 kB
positional_distribution_ncRNA.tsv
500.77 kB
utr3 region.png
227.19 kB
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_other_exon.tsv
5.83 kB
positional_distribution_genome.tsv
545.37 kB
positional_distribution_other_exon.tsv
397.77 kB
positional_distribution_utr3.tsv
292.87 kB
genome region.png
276.57 kB
K-mers
utr3 region.png
122.68 kB
other_exon region.png
193.48 kB
kmer_frequency_ncRNA.tsv
5.63 kB
kmer_frequency_intron.tsv
5.33 kB
positional_distribution_ncRNA.tsv
286.04 kB
kmer_frequency_utr3.tsv
1.40 kB
positional_distribution_utr3.tsv
83.61 kB
positional_distribution_genome.tsv
419.38 kB
kmer_frequency_other_exon.tsv
2.67 kB
genome region.png
253.52 kB
positional_distribution_intron.tsv
201.13 kB
intron region.png
202.23 kB
ncRNA region.png
263.66 kB
positional_distribution_other_exon.tsv
112.90 kB
kmer_frequency_genome.tsv
5.88 kB
K-mers
utr3 region.png
184.72 kB
other_exon region.png
309.09 kB
kmer_frequency_intron.tsv
5.80 kB
positional_distribution_ncRNA.tsv
474.59 kB
positional_distribution_intron.tsv
277.32 kB
kmer_frequency_utr3.tsv
4.41 kB
intron region.png
220.02 kB
ncRNA region.png
270.74 kB
positional_distribution_genome.tsv
517.70 kB
kmer_frequency_ncRNA.tsv
5.86 kB
kmer_frequency_genome.tsv
5.80 kB
positional_distribution_other_exon.tsv
240.59 kB
positional_distribution_utr3.tsv
170.15 kB
kmer_frequency_other_exon.tsv
5.53 kB
genome region.png
277.18 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
199.25 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
575.66 kB
K-mers
positional_distribution_ncRNA.tsv
226.53 kB
positional_distribution_utr3.tsv
53.05 kB
kmer_frequency_utr3.tsv
802 B
kmer_frequency_ncRNA.tsv
5.51 kB
genome region.png
247.39 kB
utr3 region.png
114.57 kB
positional_distribution_genome.tsv
309.40 kB
positional_distribution_other_exon.tsv
75.03 kB
kmer_frequency_intron.tsv
4.75 kB
kmer_frequency_other_exon.tsv
1.19 kB
other_exon region.png
117.84 kB
ncRNA region.png
259.94 kB
intron region.png
188.37 kB
positional_distribution_intron.tsv
151.03 kB
kmer_frequency_genome.tsv
5.87 kB
K-mers
kmer_frequency_ncRNA.tsv
5.88 kB
positional_distribution_intron.tsv
263.64 kB
ncRNA region.png
256.36 kB
other_exon region.png
252.04 kB
kmer_frequency_utr3.tsv
4.63 kB
positional_distribution_utr3.tsv
173.30 kB
kmer_frequency_other_exon.tsv
5.34 kB
positional_distribution_genome.tsv
505.72 kB
utr3 region.png
148.48 kB
genome region.png
282.80 kB
kmer_frequency_intron.tsv
5.80 kB
intron region.png
262.96 kB
positional_distribution_ncRNA.tsv
428.10 kB
positional_distribution_other_exon.tsv
207.53 kB
kmer_frequency_genome.tsv
5.79 kB
K-mers
kmer_frequency_intron.tsv
3.49 kB
intron region.png
131.57 kB
positional_distribution_ncRNA.tsv
201.36 kB
positional_distribution_utr3.tsv
33.08 kB
kmer_frequency_utr3.tsv
447 B
kmer_frequency_other_exon.tsv
1.12 kB
genome region.png
216.32 kB
kmer_frequency_genome.tsv
5.73 kB
utr3 region.png
114.50 kB
positional_distribution_other_exon.tsv
76.37 kB
positional_distribution_intron.tsv
113.81 kB
kmer_frequency_ncRNA.tsv
4.86 kB
positional_distribution_genome.tsv
254.63 kB
other_exon region.png
119.74 kB
ncRNA region.png
202.09 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.42 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.37 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.43 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
74.68 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.25 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
559.27 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
214.80 kB
iCount RNA-maps
results.tar.gz
430.49 kB
Paraclu
peaks.bed.gz
1.89 kB
Paraclu
peaks.bed.gz
559 B
iCount RNA-maps
results.tar.gz
353.80 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
125.90 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
592.33 kB
stderr.txt
1.75 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.63 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
153.91 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.60 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
433.93 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
32.47 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.83 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
283.75 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
112.94 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
313.64 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.23 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
272.92 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1.01 MB
Paraclu
peaks.bed.gz
4.09 kB
Paraclu
peaks.bed.gz
252 B
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.00 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
747.46 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
880.64 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
637.78 kB
Paraclu
peaks.bed.gz
4.15 kB
Paraclu
peaks.bed.gz
4.12 kB
K-mers
other_exon region.png
193.47 kB
kmer_frequency_ncRNA.tsv
5.63 kB
kmer_frequency_intron.tsv
5.33 kB
positional_distribution_ncRNA.tsv
286.04 kB
positional_distribution_utr3.tsv
83.61 kB
positional_distribution_intron.tsv
201.13 kB
intron region.png
202.23 kB
kmer_frequency_utr3.tsv
1.40 kB
genome region.png
253.52 kB
kmer_frequency_other_exon.tsv
2.67 kB
utr3 region.png
122.68 kB
kmer_frequency_genome.tsv
5.88 kB
positional_distribution_genome.tsv
419.38 kB
ncRNA region.png
258.97 kB
positional_distribution_other_exon.tsv
112.90 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
565.51 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
354.90 MB
report.txt
732 B
iCount RNA-maps
results.tar.gz
358.15 kB
iCount RNA-maps
results.tar.gz
570.11 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
301.68 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
122.94 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
39.81 MB
STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.46 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.45 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
592.07 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
230.58 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.45 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.38 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.94 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
iCount RNA-maps
results.tar.gz
571.67 kB
K-mers
ncRNA region.png
137.56 kB
kmer_frequency_genome.tsv
2.25 kB
kmer_frequency_utr3.tsv
447 B
positional_distribution_genome.tsv
95.48 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_other_exon.tsv
31.62 kB
kmer_frequency_other_exon.tsv
426 B
genome region.png
132.73 kB
kmer_frequency_ncRNA.tsv
794 B
utr3 region.png
114.50 kB
positional_distribution_ncRNA.tsv
62.82 kB
other_exon region.png
113.07 kB
Paraclu
peaks.bed.gz
3.51 kB
Paraclu
peaks.bed.gz
1.04 kB
K-mers
kmer_frequency_ncRNA.tsv
4.86 kB
kmer_frequency_intron.tsv
3.49 kB
intron region.png
131.36 kB
positional_distribution_ncRNA.tsv
201.36 kB
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_intron.tsv
113.81 kB
kmer_frequency_utr3.tsv
447 B
genome region.png
248.30 kB
positional_distribution_genome.tsv
260.26 kB
ncRNA region.png
202.09 kB
kmer_frequency_other_exon.tsv
1.12 kB
utr3 region.png
114.50 kB
positional_distribution_other_exon.tsv
76.37 kB
other_exon region.png
119.71 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
840.84 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.94 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
738.39 kB
iCount RNA-maps
results.tar.gz
606.90 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.90 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
139.04 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
616.96 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
56.65 kB
iCount RNA-maps
results.tar.gz
948.51 kB
iCount RNA-maps
results.tar.gz
1.16 MB
iCount RNA-maps
results.tar.gz
859.92 kB
iCount RNA-maps
results.tar.gz
417.24 kB
iCount RNA-maps
results.tar.gz
421.33 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
45.99 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
239.06 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.62 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
23.35 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
46.23 kB
K-mers
kmer_frequency_intron.tsv
5.40 kB
positional_distribution_ncRNA.tsv
329.68 kB
kmer_frequency_ncRNA.tsv
5.82 kB
positional_distribution_intron.tsv
201.38 kB
intron region.png
180.58 kB
other_exon region.png
160.18 kB
kmer_frequency_genome.tsv
5.87 kB
ncRNA region.png
266.81 kB
kmer_frequency_utr3.tsv
2.47 kB
positional_distribution_utr3.tsv
113.30 kB
positional_distribution_genome.tsv
424.99 kB
genome region.png
232.67 kB
utr3 region.png
127.95 kB
kmer_frequency_other_exon.tsv
2.87 kB
positional_distribution_other_exon.tsv
117.22 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
192.61 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
746.55 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
67.85 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
Paraclu
peaks.bed.gz
7.25 kB
K-mers
other_exon region.png
169.68 kB
kmer_frequency_ncRNA.tsv
4.56 kB
positional_distribution_intron.tsv
49.68 kB
kmer_frequency_utr3.tsv
420 B
ncRNA region.png
235.89 kB
positional_distribution_genome.tsv
195.06 kB
positional_distribution_utr3.tsv
32.32 kB
intron region.png
116.31 kB
kmer_frequency_other_exon.tsv
1.24 kB
genome region.png
210.61 kB
positional_distribution_other_exon.tsv
70.58 kB
kmer_frequency_genome.tsv
5.55 kB
utr3 region.png
110.02 kB
kmer_frequency_intron.tsv
893 B
positional_distribution_ncRNA.tsv
161.51 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.72 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
37.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
184.74 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
23.58 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
53.77 kB
K-mers
kmer_frequency_intron.tsv
4.92 kB
positional_distribution_ncRNA.tsv
255.04 kB
intron region.png
193.93 kB
kmer_frequency_genome.tsv
5.88 kB
positional_distribution_intron.tsv
170.63 kB
positional_distribution_utr3.tsv
59.73 kB
kmer_frequency_ncRNA.tsv
5.50 kB
kmer_frequency_utr3.tsv
868 B
genome region.png
233.71 kB
ncRNA region.png
232.99 kB
utr3 region.png
125.98 kB
positional_distribution_genome.tsv
351.74 kB
positional_distribution_other_exon.tsv
85.02 kB
kmer_frequency_other_exon.tsv
1.51 kB
other_exon region.png
148.11 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.31 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.56 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.84 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.15 MB
iCount RNA-maps
results.tar.gz
789.11 kB
iCount RNA-maps
results.tar.gz
788.07 kB
iCount RNA-maps
results.tar.gz
463.15 kB
Paraclu
peaks.bed.gz
1.92 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
933.40 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
80.49 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.21 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
248.83 kB
FASTQ file (single-end)
stderr.txt
1.73 kB
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
166.54 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
564.79 kB
iCount RNA-maps
results.tar.gz
463.10 kB
Paraclu
peaks.bed.gz
1.88 kB
iCount RNA-maps
results.tar.gz
788.55 kB
iCount RNA-maps
results.tar.gz
1.07 MB
iCount RNA-maps
results.tar.gz
1.16 MB
iCount RNA-maps
results.tar.gz
360.64 kB
Paraclu
peaks.bed.gz
1.87 kB
iCount RNA-maps
results.tar.gz
356.92 kB
Paraclu
peaks.bed.gz
6.41 kB
Paraclu
peaks.bed.gz
3.85 kB
iCount RNA-maps
results.tar.gz
463.15 kB
iCount RNA-maps
results.tar.gz
1.16 MB
Paraclu
peaks.bed.gz
1.10 kB
iCount RNA-maps
results.tar.gz
1.16 MB
Paraclu
peaks.bed.gz
4.09 kB
Paraclu
peaks.bed.gz
3.55 kB
Cutadapt (single-end)
report.txt
727 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
156.67 MB
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
563.89 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
62.98 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
58.72 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.93 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.14 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
281.60 MB
iCount RNA-maps
results.tar.gz
430.47 kB
iCount RNA-maps
results.tar.gz
417.94 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.84 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.56 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.31 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.15 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
80.49 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
933.40 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
248.83 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.21 MB
iCount RNA-maps
results.tar.gz
358.17 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
40.45 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
306.44 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
122.97 kB
iCount RNA-maps
results.tar.gz
358.80 kB
STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.54 GB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.08 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
226.00 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
185.73 MB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.35 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
80.63 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
365.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
847.58 MB
K-mers
positional_distribution_ncRNA.tsv
201.36 kB
utr3 region.png
115.60 kB
positional_distribution_intron.tsv
113.81 kB
ncRNA region.png
201.49 kB
other_exon region.png
119.74 kB
positional_distribution_utr3.tsv
33.08 kB
intron region.png
130.92 kB
kmer_frequency_utr3.tsv
447 B
genome region.png
248.23 kB
kmer_frequency_intron.tsv
3.49 kB
positional_distribution_genome.tsv
260.26 kB
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_other_exon.tsv
76.37 kB
kmer_frequency_other_exon.tsv
1.12 kB
kmer_frequency_ncRNA.tsv
4.86 kB
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
416 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
906 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
56.50 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.84 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.44 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.14 MB
iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
982 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
290.24 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
996 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
435 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
768.29 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
632.57 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
998 B
iCount RNA-maps
results.tar.gz
949.95 kB
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
206.55 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
977 B
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
428 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
332.67 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
986 B
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1005 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
683.95 kB
Paraclu
peaks.bed.gz
4.09 kB
iCount RNA-maps
results.tar.gz
613.42 kB
Paraclu
peaks.bed.gz
7.72 kB
Paraclu
peaks.bed.gz
252 B
K-mers
kmer_frequency_intron.tsv
893 B
kmer_frequency_ncRNA.tsv
4.56 kB
positional_distribution_utr3.tsv
32.32 kB
positional_distribution_ncRNA.tsv
161.51 kB
genome region.png
220.13 kB
other_exon region.png
132.40 kB
positional_distribution_intron.tsv
49.68 kB
utr3 region.png
110.02 kB
ncRNA region.png
235.89 kB
kmer_frequency_other_exon.tsv
1.08 kB
kmer_frequency_utr3.tsv
420 B
intron region.png
116.19 kB
positional_distribution_other_exon.tsv
68.40 kB
positional_distribution_genome.tsv
188.54 kB
kmer_frequency_genome.tsv
5.43 kB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
102.38 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
13.07 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.70 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.04 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
9.91 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
29.68 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
607.74 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
91.42 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
598.06 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
982 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
290.24 kB
Paraclu
peaks.bed.gz
1.10 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
161.47 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
624.13 kB
iCount RNA-maps
results.tar.gz
463.15 kB
Paraclu
peaks.bed.gz
3.85 kB
Paraclu
peaks.bed.gz
2.58 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
573.09 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
108.29 MB
iCount RNA-maps
results.tar.gz
417.26 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
103.92 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
608.90 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
637.78 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
iCount RNA-maps
results.tar.gz
421.35 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
128.98 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
599.59 kB
stderr.txt
1.81 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
153.91 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.63 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.60 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
433.93 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
293.14 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
609.60 kB
stderr.txt
1.73 kB
Paraclu
peaks.bed.gz
4.15 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
91.45 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
986.37 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
266.54 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.44 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
FASTQ file (single-end)
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
30.06 MB
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
598.29 kB
stderr.txt
1.58 kB
Paraclu
peaks.bed.gz
559 B
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
368.90 MB
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
580.98 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.98 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
36.91 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
145.88 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
304.92 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
213.04 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.06 kB
Paraclu
peaks.bed.gz
8.30 kB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
218.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
558.17 kB
fastqc
Directory
stderr.txt
1.75 kB
Paraclu
peaks.bed.gz
9.64 kB
iCount RNA-maps
results.tar.gz
1.08 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
374.22 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
563.00 kB
iCount RNA-maps
results.tar.gz
1.16 MB
iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
7.46 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
114.32 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
23.80 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
8.14 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
582.45 kB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
97.27 MB
iCount RNA-maps
results.tar.gz
613.42 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
82.59 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
576.85 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
340.42 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
60.10 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
67.71 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
208.30 kB
Paraclu
peaks.bed.gz
3.55 kB
iCount RNA-maps
results.tar.gz
570.10 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
163.98 MB
stderr.txt
1.73 kB
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
566.86 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
98.91 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
573.76 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
93.29 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
597.99 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
129.67 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
588.42 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
218.72 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
566.59 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
297.96 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
612.44 kB
stderr.txt
1.73 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
132.37 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
594.93 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
106.33 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
602.78 kB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
110.74 MB
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
578.93 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
808.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
703.30 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
190.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.74 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
83.92 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.65 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
582.33 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
374.63 MB
FASTQ file (single-end)
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
379.53 MB
stderr.txt
1.73 kB
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
559.28 kB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
30.56 MB
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
594.40 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
556.78 kB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
221.36 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
308.60 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
268.39 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
999.21 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1016.39 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
559.26 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
74.68 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.25 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
214.80 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
Paraclu
peaks.bed.gz
4.04 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
187.37 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
771.31 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
213.19 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
693.01 kB
iCount RNA-maps
results.tar.gz
421.34 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
161.47 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
624.13 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
108.29 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
573.09 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
457.71 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
96.63 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
302.24 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.59 kB
STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.10 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
86.95 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
13.08 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.65 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
19.95 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
93.48 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
83.37 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
467.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
294.29 kB
iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
36.23 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
125.25 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
41.50 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
167.69 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1014 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1003 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.14 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1000 B
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1007 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.25 MB
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
868.63 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
986.28 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.52 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.48 MB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
607.74 kB
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
29.68 MB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
952.27 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
794.33 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
216.29 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
246.67 kB
FASTQ file (single-end)
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
91.42 MB
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
598.06 kB
Paraclu
peaks.bed.gz
1.10 kB
iCount RNA-maps
results.tar.gz
353.80 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.14 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
735.42 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.93 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
837.74 kB
Paraclu
peaks.bed.gz
2.58 kB
K-mers
kmer_frequency_intron.tsv
447 B
positional_distribution_ncRNA.tsv
62.82 kB
kmer_frequency_ncRNA.tsv
794 B
positional_distribution_intron.tsv
31.53 kB
ncRNA region.png
137.56 kB
other_exon region.png
113.07 kB
intron region.png
114.96 kB
kmer_frequency_utr3.tsv
447 B
kmer_frequency_genome.tsv
3.83 kB
positional_distribution_genome.tsv
125.92 kB
positional_distribution_utr3.tsv
33.08 kB
utr3 region.png
115.60 kB
kmer_frequency_other_exon.tsv
426 B
genome region.png
161.42 kB
positional_distribution_other_exon.tsv
31.62 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
103.92 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
608.90 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.28 MB
iCount RNA-maps
results.tar.gz
357.30 kB
Paraclu
peaks.bed.gz
2.53 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
128.98 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
599.59 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
349.61 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
results.tar.gz
360.64 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.13 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
4.84 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.27 MB
K-mers
kmer_frequency_ncRNA.tsv
5.82 kB
kmer_frequency_utr3.tsv
2.47 kB
other_exon region.png
160.44 kB
intron region.png
180.58 kB
positional_distribution_genome.tsv
424.99 kB
positional_distribution_utr3.tsv
113.30 kB
positional_distribution_intron.tsv
201.38 kB
positional_distribution_other_exon.tsv
117.22 kB
kmer_frequency_genome.tsv
5.87 kB
kmer_frequency_intron.tsv
5.40 kB
genome region.png
232.67 kB
kmer_frequency_other_exon.tsv
2.87 kB
ncRNA region.png
266.61 kB
utr3 region.png
127.95 kB
positional_distribution_ncRNA.tsv
329.68 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
125.90 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
592.33 kB
Paraclu
peaks.bed.gz
1.87 kB
iCount RNA-maps
results.tar.gz
356.91 kB
K-mers
positional_distribution_intron.tsv
178.59 kB
other_exon region.png
197.89 kB
ncRNA region.png
231.95 kB
intron region.png
194.73 kB
kmer_frequency_ncRNA.tsv
5.54 kB
kmer_frequency_intron.tsv
5.14 kB
kmer_frequency_genome.tsv
5.89 kB
kmer_frequency_utr3.tsv
1.14 kB
positional_distribution_utr3.tsv
77.49 kB
positional_distribution_ncRNA.tsv
261.96 kB
utr3 region.png
124.44 kB
kmer_frequency_other_exon.tsv
3.10 kB
genome region.png
230.97 kB
positional_distribution_genome.tsv
362.28 kB
positional_distribution_other_exon.tsv
117.90 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
293.14 MB
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
609.60 kB
stderr.txt
1.73 kB
iCount RNA-maps
results.tar.gz
613.44 kB
K-mers
other_exon region.png
148.11 kB
kmer_frequency_ncRNA.tsv
5.50 kB
intron region.png
193.83 kB
positional_distribution_intron.tsv
170.63 kB
kmer_frequency_utr3.tsv
868 B
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_intron.tsv
4.92 kB
positional_distribution_genome.tsv
351.74 kB
ncRNA region.png
233.79 kB
utr3 region.png
125.77 kB
positional_distribution_ncRNA.tsv
255.04 kB
positional_distribution_utr3.tsv
59.73 kB
kmer_frequency_other_exon.tsv
1.51 kB
positional_distribution_other_exon.tsv
85.02 kB
genome region.png
233.18 kB
K-mers
kmer_frequency_intron.tsv
893 B
other_exon region.png
169.68 kB
positional_distribution_ncRNA.tsv
161.51 kB
intron region.png
116.31 kB
kmer_frequency_ncRNA.tsv
4.56 kB
kmer_frequency_genome.tsv
5.55 kB
positional_distribution_intron.tsv
49.68 kB
kmer_frequency_utr3.tsv
420 B
ncRNA region.png
235.75 kB
positional_distribution_genome.tsv
195.06 kB
positional_distribution_utr3.tsv
32.32 kB
kmer_frequency_other_exon.tsv
1.24 kB
utr3 region.png
109.18 kB
positional_distribution_other_exon.tsv
70.58 kB
genome region.png
210.61 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
30.06 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
598.29 kB
K-mers
kmer_frequency_ncRNA.tsv
5.35 kB
intron region.png
177.83 kB
kmer_frequency_intron.tsv
4.40 kB
other_exon region.png
113.00 kB
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_ncRNA.tsv
226.85 kB
kmer_frequency_genome.tsv
5.84 kB
positional_distribution_intron.tsv
145.74 kB
kmer_frequency_utr3.tsv
772 B
kmer_frequency_other_exon.tsv
725 B
genome region.png
216.73 kB
utr3 region.png
111.76 kB
ncRNA region.png
262.97 kB
positional_distribution_other_exon.tsv
54.45 kB
positional_distribution_genome.tsv
309.19 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
368.90 MB
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
580.98 kB
Paraclu
peaks.bed.gz
6.41 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.19 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.14 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.82 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.30 MB
Paraclu
peaks.bed.gz
9.64 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
213.04 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.06 kB
stderr.txt
1.81 kB
iCount RNA-maps
results.tar.gz
949.83 kB
Paraclu
peaks.bed.gz
8.30 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
218.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
558.17 kB
stderr.txt
1.75 kB
iCount RNA-maps
results.tar.gz
1.08 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
563.00 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
374.22 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
582.45 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
97.27 MB
iCount RNA-maps
results.tar.gz
463.13 kB
K-mers
positional_distribution_intron.tsv
191.89 kB
ncRNA region.png
308.91 kB
kmer_frequency_intron.tsv
5.50 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_ncRNA.tsv
377.17 kB
kmer_frequency_utr3.tsv
3.77 kB
intron region.png
217.64 kB
other_exon region.png
167.88 kB
positional_distribution_utr3.tsv
137.51 kB
utr3 region.png
147.60 kB
positional_distribution_genome.tsv
446.88 kB
kmer_frequency_genome.tsv
5.86 kB
positional_distribution_other_exon.tsv
126.53 kB
genome region.png
305.66 kB
kmer_frequency_other_exon.tsv
3.27 kB
iCount RNA-maps
results.tar.gz
861.68 kB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
576.85 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
82.59 MB
fastqc
Directory
stderr.txt
1.75 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.45 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.38 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.94 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
Paraclu
peaks.bed.gz
3.55 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
163.98 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
566.86 kB
iCount RNA-maps
results.tar.gz
859.92 kB
Paraclu
peaks.bed.gz
7.30 kB
Cutadapt (single-end)
report.txt
718 B
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
22.71 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
591.67 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
83.59 MB
report.txt
732 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
553.25 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
94.38 MB
report.txt
728 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
530.99 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.94 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
739.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.97 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
872.45 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
iCount RNA-maps
results.tar.gz
948.57 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
731 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
569.43 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
147.92 MB
Paraclu
peaks.bed.gz
6.01 kB
Cutadapt (single-end)
report.txt
727 B
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
563.76 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
94.76 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
551.17 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
114.68 MB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
109.74 MB
fastqc
Directory
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
558.05 kB
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
28.37 MB
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
589.91 kB
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
412 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
894 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
36.43 kB
Cutadapt (single-end)
report.txt
731 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
205.23 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
556.22 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
987 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
282.65 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
270.85 MB
report.txt
728 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
568.75 kB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
209.93 MB
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
534.69 kB
Cutadapt (single-end)
report.txt
731 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
91.28 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
544.27 kB
K-mers
kmer_frequency_genome.tsv
2.25 kB
kmer_frequency_utr3.tsv
447 B
ncRNA region.png
137.56 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_genome.tsv
95.48 kB
utr3 region.png
115.60 kB
genome region.png
132.51 kB
other_exon region.png
113.21 kB
kmer_frequency_other_exon.tsv
426 B
kmer_frequency_ncRNA.tsv
794 B
positional_distribution_other_exon.tsv
31.62 kB
positional_distribution_ncRNA.tsv
62.82 kB
Cutadapt (single-end)
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
77.82 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
563.22 kB
K-mers
kmer_frequency_intron.tsv
3.49 kB
positional_distribution_ncRNA.tsv
201.36 kB
other_exon region.png
113.04 kB
intron region.png
131.36 kB
positional_distribution_intron.tsv
113.81 kB
kmer_frequency_utr3.tsv
447 B
ncRNA region.png
202.09 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_genome.tsv
254.63 kB
kmer_frequency_genome.tsv
5.73 kB
kmer_frequency_other_exon.tsv
1.12 kB
positional_distribution_other_exon.tsv
76.37 kB
genome region.png
216.37 kB
utr3 region.png
115.60 kB
kmer_frequency_ncRNA.tsv
4.86 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
546.26 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
361.91 MB
K-mers
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_intron.tsv
5.80 kB
intron region.png
249.17 kB
other_exon region.png
260.96 kB
positional_distribution_ncRNA.tsv
497.49 kB
kmer_frequency_genome.tsv
5.80 kB
kmer_frequency_utr3.tsv
5.23 kB
positional_distribution_intron.tsv
295.31 kB
positional_distribution_genome.tsv
531.57 kB
ncRNA region.png
267.00 kB
utr3 region.png
237.07 kB
positional_distribution_utr3.tsv
204.03 kB
kmer_frequency_other_exon.tsv
5.74 kB
positional_distribution_other_exon.tsv
278.86 kB
genome region.png
290.59 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
564.30 kB
report.txt
727 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
154.94 MB
K-mers
kmer_frequency_intron.tsv
5.14 kB
other_exon region.png
197.89 kB
positional_distribution_ncRNA.tsv
261.96 kB
kmer_frequency_ncRNA.tsv
5.54 kB
positional_distribution_intron.tsv
176.21 kB
intron region.png
176.66 kB
positional_distribution_utr3.tsv
77.49 kB
utr3 region.png
124.44 kB
kmer_frequency_genome.tsv
5.89 kB
ncRNA region.png
231.95 kB
genome region.png
228.88 kB
kmer_frequency_other_exon.tsv
3.10 kB
positional_distribution_other_exon.tsv
117.90 kB
kmer_frequency_utr3.tsv
1.14 kB
positional_distribution_genome.tsv
356.35 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
995 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
432 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
625.51 kB
K-mers
other_exon region.png
154.33 kB
positional_distribution_utr3.tsv
127.77 kB
kmer_frequency_utr3.tsv
3.24 kB
positional_distribution_intron.tsv
173.62 kB
genome region.png
328.58 kB
positional_distribution_genome.tsv
442.04 kB
intron region.png
197.98 kB
ncRNA region.png
266.35 kB
positional_distribution_other_exon.tsv
127.32 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_other_exon.tsv
2.97 kB
utr3 region.png
135.84 kB
kmer_frequency_intron.tsv
5.32 kB
positional_distribution_ncRNA.tsv
386.01 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
434 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
999 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
756.59 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
633.36 kB
K-mers
positional_distribution_other_exon.tsv
200.53 kB
kmer_frequency_intron.tsv
5.89 kB
intron region.png
224.37 kB
kmer_frequency_utr3.tsv
4.34 kB
positional_distribution_utr3.tsv
165.28 kB
utr3 region.png
149.69 kB
positional_distribution_intron.tsv
270.81 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_genome.tsv
508.11 kB
positional_distribution_ncRNA.tsv
425.46 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_genome.tsv
5.80 kB
other_exon region.png
274.84 kB
ncRNA region.png
302.20 kB
genome region.png
320.22 kB
FASTQ file (single-end)
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
70.00 MB
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
594.78 kB
stderr.txt
1.83 kB
K-mers
other_exon region.png
251.90 kB
intron region.png
262.96 kB
positional_distribution_intron.tsv
263.64 kB
kmer_frequency_intron.tsv
5.80 kB
kmer_frequency_utr3.tsv
4.63 kB
kmer_frequency_genome.tsv
5.79 kB
kmer_frequency_ncRNA.tsv
5.88 kB
ncRNA region.png
256.32 kB
positional_distribution_genome.tsv
505.72 kB
positional_distribution_ncRNA.tsv
428.10 kB
positional_distribution_utr3.tsv
173.30 kB
positional_distribution_other_exon.tsv
207.53 kB
kmer_frequency_other_exon.tsv
5.34 kB
utr3 region.png
148.48 kB
genome region.png
282.80 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.43 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.46 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.11 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
K-mers
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_ncRNA.tsv
477.74 kB
other_exon region.png
258.65 kB
kmer_frequency_utr3.tsv
4.41 kB
intron region.png
211.07 kB
positional_distribution_intron.tsv
283.29 kB
positional_distribution_genome.tsv
523.92 kB
kmer_frequency_genome.tsv
5.78 kB
ncRNA region.png
271.49 kB
positional_distribution_utr3.tsv
170.15 kB
kmer_frequency_other_exon.tsv
5.55 kB
genome region.png
230.51 kB
positional_distribution_other_exon.tsv
231.33 kB
utr3 region.png
184.90 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.45 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
88.92 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
601.04 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
230.58 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1010 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.27 MB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
345.12 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
K-mers
other_exon region.png
148.01 kB
intron region.png
189.83 kB
positional_distribution_intron.tsv
168.81 kB
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_utr3.tsv
868 B
ncRNA region.png
233.79 kB
positional_distribution_utr3.tsv
59.73 kB
positional_distribution_genome.tsv
349.60 kB
kmer_frequency_ncRNA.tsv
5.50 kB
utr3 region.png
125.98 kB
genome region.png
233.71 kB
kmer_frequency_intron.tsv
4.92 kB
positional_distribution_other_exon.tsv
85.02 kB
kmer_frequency_other_exon.tsv
1.51 kB
positional_distribution_ncRNA.tsv
255.04 kB
K-mers
positional_distribution_intron.tsv
151.03 kB
ncRNA region.png
259.94 kB
intron region.png
188.06 kB
kmer_frequency_intron.tsv
4.75 kB
kmer_frequency_genome.tsv
5.87 kB
positional_distribution_ncRNA.tsv
226.53 kB
kmer_frequency_ncRNA.tsv
5.51 kB
positional_distribution_utr3.tsv
53.05 kB
kmer_frequency_utr3.tsv
802 B
other_exon region.png
117.84 kB
utr3 region.png
114.57 kB
genome region.png
241.27 kB
positional_distribution_genome.tsv
305.31 kB
positional_distribution_other_exon.tsv
75.03 kB
kmer_frequency_other_exon.tsv
1.19 kB
K-mers
kmer_frequency_ncRNA.tsv
5.35 kB
kmer_frequency_intron.tsv
4.40 kB
positional_distribution_intron.tsv
145.74 kB
positional_distribution_ncRNA.tsv
226.85 kB
ncRNA region.png
262.97 kB
intron region.png
177.83 kB
other_exon region.png
116.11 kB
kmer_frequency_utr3.tsv
772 B
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_genome.tsv
309.50 kB
kmer_frequency_genome.tsv
5.84 kB
utr3 region.png
110.54 kB
kmer_frequency_other_exon.tsv
725 B
genome region.png
217.08 kB
positional_distribution_other_exon.tsv
54.45 kB
K-mers
positional_distribution_intron.tsv
290.68 kB
kmer_frequency_intron.tsv
5.78 kB
ncRNA region.png
270.45 kB
positional_distribution_ncRNA.tsv
495.86 kB
kmer_frequency_utr3.tsv
5.23 kB
kmer_frequency_ncRNA.tsv
5.86 kB
intron region.png
263.89 kB
positional_distribution_utr3.tsv
204.03 kB
positional_distribution_genome.tsv
529.69 kB
utr3 region.png
236.96 kB
kmer_frequency_genome.tsv
5.79 kB
genome region.png
293.80 kB
kmer_frequency_other_exon.tsv
5.74 kB
other_exon region.png
253.42 kB
positional_distribution_other_exon.tsv
278.00 kB
Cutadapt (single-end)
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
591.67 kB
report.txt
718 B
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
22.71 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
732 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
553.25 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
83.59 MB
FASTQ file (single-end)
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
130.88 MB
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
612.29 kB
Paraclu
peaks.bed.gz
1.89 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
147.92 MB
report.txt
731 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
569.43 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
423 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
980 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
331.05 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.46 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1018 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
417 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.12 MB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
94.38 MB
fastqc
Directory
report.txt
728 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
530.99 kB
Paraclu
peaks.bed.gz
17.49 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
94.76 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
563.76 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
72.61 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
572.29 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
114.68 MB
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
551.17 kB
K-mers
kmer_frequency_intron.tsv
5.73 kB
positional_distribution_ncRNA.tsv
427.15 kB
other_exon region.png
252.04 kB
positional_distribution_intron.tsv
255.25 kB
kmer_frequency_ncRNA.tsv
5.89 kB
intron region.png
240.03 kB
kmer_frequency_utr3.tsv
4.54 kB
ncRNA region.png
256.26 kB
positional_distribution_utr3.tsv
169.28 kB
positional_distribution_genome.tsv
502.16 kB
kmer_frequency_other_exon.tsv
5.34 kB
utr3 region.png
140.99 kB
positional_distribution_other_exon.tsv
207.53 kB
genome region.png
280.37 kB
kmer_frequency_genome.tsv
5.80 kB
Paraclu
peaks.bed.gz
4.04 kB
Cutadapt (single-end)
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
109.74 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
558.05 kB
STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
12.18 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.10 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
85.33 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
19.95 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.65 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
Paraclu
peaks.bed.gz
7.25 kB
Cutadapt (single-end)
report.txt
728 B
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
270.85 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
568.75 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.37 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.42 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.43 MB
Cutadapt (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
354.90 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
565.51 kB
report.txt
732 B
Cutadapt (single-end)
report.txt
731 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
556.22 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
205.23 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
599.09 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
82.87 MB
stderr.txt
1.73 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
534.69 kB
report.txt
728 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
209.93 MB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
91.28 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
544.27 kB
report.txt
731 B
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
77.82 MB
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
563.22 kB
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
238.64 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
25.25 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
53.51 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.31 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
21.84 kB
Cutadapt (single-end)
report.txt
727 B
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
361.91 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
546.26 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
616.03 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
79.28 MB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
249.56 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
63.32 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
71.38 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.83 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
593.48 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
74.59 MB
stderr.txt
1.75 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
564.30 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
154.94 MB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
98.13 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.25 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
86.15 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
405.67 MB
STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
58.72 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
61.12 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.14 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
276.87 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.93 MB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
89.08 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.49 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
886.08 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
381.65 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
229.79 MB
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
615.09 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
85.65 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.45 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
287.56 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.36 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
28.18 kB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.96 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
16.47 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
115.26 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.88 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
14.91 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
85.21 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.49 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
258.97 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
31.06 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.76 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
Paraclu
peaks.bed.gz
4.12 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
88.98 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.43 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
266.51 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
969.46 MB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
25.42 MB
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
592.32 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
190.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
736.12 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
67.85 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.53 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.48 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
381.65 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
873.37 MB
STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
183.79 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.07 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.51 GB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
226.00 kB
FASTQ file (single-end)
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
333.07 MB
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
581.44 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
575.66 kB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
199.25 MB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
49.31 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
332.71 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.18 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
158.20 kB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
207.75 MB
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
560.24 kB
stderr.txt
1.75 kB
STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
12.18 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.10 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
85.33 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.65 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
19.95 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.78 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
167.76 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.65 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
457.90 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.45 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.46 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
230.58 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
592.07 MB
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
53.51 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
238.64 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.31 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
21.84 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
25.25 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.25 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
405.67 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
98.13 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
86.15 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
25.99 kB
K-mers
other_exon region.png
253.11 kB
kmer_frequency_ncRNA.tsv
5.83 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_intron.tsv
421.64 kB
intron region.png
250.00 kB
positional_distribution_ncRNA.tsv
502.02 kB
kmer_frequency_utr3.tsv
5.35 kB
ncRNA region.png
287.05 kB
kmer_frequency_other_exon.tsv
5.83 kB
utr3 region.png
225.79 kB
kmer_frequency_genome.tsv
5.86 kB
positional_distribution_utr3.tsv
292.87 kB
positional_distribution_genome.tsv
546.83 kB
positional_distribution_other_exon.tsv
400.63 kB
genome region.png
284.85 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
354.42 MB
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
559.23 kB
iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
43.66 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
14.95 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
330.49 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
13.85 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
63.32 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
71.38 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
249.56 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.83 kB
FASTQ file (single-end)
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
81.78 MB
stderr.txt
1.81 kB
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
570.94 kB
iCount RNA-maps
results.tar.gz
861.66 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
496.91 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
63.40 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
71.31 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
219.56 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
276.87 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
61.12 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
58.72 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.93 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.14 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.07 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
195.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
223.14 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
721.12 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
85.65 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.45 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
287.56 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.36 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
28.18 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.23 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1.01 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
313.64 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
272.92 kB
iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
38.18 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
43.60 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
286.33 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
131.62 kB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
16.47 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.96 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
115.26 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.88 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
14.91 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
963.68 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
191.21 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.50 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
706.60 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.43 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
72.56 MB
stderr.txt
1.75 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
98.58 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
308.43 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
589.53 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
87.37 kB
Paraclu
peaks.bed.gz
1.92 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.49 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
85.21 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
31.06 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
258.97 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.76 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
608.16 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
300.38 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
95.47 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.22 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.15 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
219.54 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
250.24 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
805.87 kB
STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.07 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
183.79 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
226.00 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.51 GB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.14 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.29 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
190.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
67.85 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
736.13 MB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
88.98 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.43 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
266.51 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
969.45 MB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.53 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
873.37 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.48 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
381.65 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
871.99 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.49 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
990.14 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.78 MB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
738.40 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.94 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
840.84 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
147.18 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
570.13 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.15 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.56 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.31 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.84 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.84 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.44 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.14 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
iCount RNA-maps
results.tar.gz
949.81 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
39.81 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
301.68 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
122.94 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.18 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
49.31 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
158.20 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
332.71 MB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.00 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
747.47 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
880.64 kB
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
906 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
416 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
56.50 kB
iCount RNA-maps
results.tar.gz
281.33 kB
K-mers
other_exon region.png
113.07 kB
kmer_frequency_utr3.tsv
447 B
positional_distribution_genome.tsv
125.92 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_intron.tsv
31.53 kB
intron region.png
114.92 kB
genome region.png
161.48 kB
ncRNA region.png
137.56 kB
utr3 region.png
114.50 kB
kmer_frequency_genome.tsv
3.83 kB
kmer_frequency_intron.tsv
447 B
kmer_frequency_ncRNA.tsv
794 B
positional_distribution_ncRNA.tsv
62.82 kB
kmer_frequency_other_exon.tsv
426 B
positional_distribution_other_exon.tsv
31.62 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.78 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.65 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
167.76 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
457.90 kB
iCount RNA-maps
results.tar.gz
358.80 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
637.78 kB
iCount RNA-maps
results.tar.gz
358.80 kB
Paraclu
peaks.bed.gz
2.53 kB
Paraclu
peaks.bed.gz
3.51 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
998 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
632.57 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
996 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
768.29 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
435 B
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
206.55 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
977 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1005 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
683.95 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
349.61 kB
iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
330.49 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
13.85 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
14.95 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
43.66 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
iCount RNA-maps
results.tar.gz
281.32 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
428 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
332.67 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
986 B
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
683.95 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1005 B
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1014 B
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
63.40 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
71.31 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
496.91 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
219.56 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1000 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.14 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1003 B
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1007 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.25 MB
Paraclu
peaks.bed.gz
7.30 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
195.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
223.14 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.07 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
721.12 kB
iCount RNA-maps
results.tar.gz
417.26 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.28 MB
iCount RNA-maps
results.tar.gz
1.07 MB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
191.21 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
963.68 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.50 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
706.60 kB
iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
131.62 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
286.33 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
43.60 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
38.18 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
87.37 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
589.53 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
308.43 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
98.58 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.22 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
95.47 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
608.16 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
300.38 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
219.54 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
250.24 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
805.87 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.15 MB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
998 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
432 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.14 MB
K-mers
other_exon region.png
119.74 kB
kmer_frequency_ncRNA.tsv
4.86 kB
kmer_frequency_intron.tsv
3.49 kB
positional_distribution_ncRNA.tsv
201.36 kB
positional_distribution_intron.tsv
113.81 kB
intron region.png
131.57 kB
ncRNA region.png
201.49 kB
positional_distribution_utr3.tsv
33.08 kB
kmer_frequency_utr3.tsv
447 B
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_other_exon.tsv
76.37 kB
genome region.png
248.23 kB
positional_distribution_genome.tsv
260.26 kB
kmer_frequency_other_exon.tsv
1.12 kB
utr3 region.png
114.50 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
333.30 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1014 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
K-mers
kmer_frequency_intron.tsv
5.14 kB
positional_distribution_ncRNA.tsv
261.96 kB
positional_distribution_intron.tsv
178.59 kB
ncRNA region.png
231.95 kB
kmer_frequency_ncRNA.tsv
5.54 kB
intron region.png
194.73 kB
kmer_frequency_utr3.tsv
1.14 kB
other_exon region.png
197.89 kB
kmer_frequency_genome.tsv
5.89 kB
utr3 region.png
123.84 kB
positional_distribution_genome.tsv
362.28 kB
positional_distribution_utr3.tsv
77.49 kB
kmer_frequency_other_exon.tsv
3.10 kB
positional_distribution_other_exon.tsv
117.90 kB
genome region.png
230.97 kB
K-mers
other_exon region.png
160.44 kB
kmer_frequency_ncRNA.tsv
5.82 kB
kmer_frequency_intron.tsv
5.40 kB
intron region.png
180.58 kB
positional_distribution_ncRNA.tsv
329.68 kB
positional_distribution_intron.tsv
201.38 kB
kmer_frequency_genome.tsv
5.87 kB
kmer_frequency_utr3.tsv
2.47 kB
positional_distribution_utr3.tsv
113.30 kB
ncRNA region.png
266.26 kB
kmer_frequency_other_exon.tsv
2.87 kB
positional_distribution_other_exon.tsv
117.22 kB
positional_distribution_genome.tsv
424.99 kB
utr3 region.png
127.95 kB
genome region.png
232.67 kB
K-mers
other_exon region.png
169.68 kB
kmer_frequency_ncRNA.tsv
4.56 kB
kmer_frequency_intron.tsv
893 B
positional_distribution_intron.tsv
49.68 kB
intron region.png
116.19 kB
kmer_frequency_utr3.tsv
420 B
positional_distribution_ncRNA.tsv
161.51 kB
ncRNA region.png
235.89 kB
positional_distribution_genome.tsv
195.06 kB
positional_distribution_utr3.tsv
32.32 kB
kmer_frequency_genome.tsv
5.55 kB
utr3 region.png
110.02 kB
positional_distribution_other_exon.tsv
70.58 kB
kmer_frequency_other_exon.tsv
1.24 kB
genome region.png
210.61 kB
K-mers
kmer_frequency_ncRNA.tsv
5.50 kB
kmer_frequency_intron.tsv
4.92 kB
positional_distribution_utr3.tsv
59.73 kB
positional_distribution_intron.tsv
170.63 kB
other_exon region.png
148.01 kB
positional_distribution_ncRNA.tsv
255.04 kB
utr3 region.png
125.77 kB
intron region.png
193.83 kB
genome region.png
233.18 kB
ncRNA region.png
233.79 kB
kmer_frequency_other_exon.tsv
1.51 kB
kmer_frequency_utr3.tsv
868 B
kmer_frequency_genome.tsv
5.88 kB
positional_distribution_other_exon.tsv
85.02 kB
positional_distribution_genome.tsv
351.74 kB
K-mers
other_exon region.png
117.84 kB
kmer_frequency_ncRNA.tsv
5.51 kB
positional_distribution_utr3.tsv
53.05 kB
intron region.png
188.06 kB
kmer_frequency_intron.tsv
4.75 kB
positional_distribution_other_exon.tsv
75.03 kB
utr3 region.png
114.57 kB
kmer_frequency_genome.tsv
5.87 kB
genome region.png
247.39 kB
positional_distribution_ncRNA.tsv
226.53 kB
kmer_frequency_utr3.tsv
802 B
positional_distribution_intron.tsv
151.03 kB
kmer_frequency_other_exon.tsv
1.19 kB
positional_distribution_genome.tsv
309.40 kB
ncRNA region.png
259.84 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1003 B
K-mers
kmer_frequency_ncRNA.tsv
5.35 kB
positional_distribution_intron.tsv
145.74 kB
intron region.png
178.23 kB
kmer_frequency_utr3.tsv
772 B
ncRNA region.png
261.16 kB
utr3 region.png
110.54 kB
kmer_frequency_other_exon.tsv
725 B
positional_distribution_genome.tsv
309.19 kB
kmer_frequency_genome.tsv
5.84 kB
other_exon region.png
116.11 kB
kmer_frequency_intron.tsv
4.40 kB
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_other_exon.tsv
54.45 kB
positional_distribution_ncRNA.tsv
226.85 kB
genome region.png
216.78 kB
K-mers
other_exon region.png
193.47 kB
kmer_frequency_intron.tsv
5.33 kB
positional_distribution_ncRNA.tsv
286.04 kB
kmer_frequency_ncRNA.tsv
5.63 kB
kmer_frequency_utr3.tsv
1.40 kB
positional_distribution_intron.tsv
201.13 kB
positional_distribution_utr3.tsv
83.61 kB
utr3 region.png
122.68 kB
positional_distribution_genome.tsv
419.38 kB
ncRNA region.png
259.83 kB
kmer_frequency_other_exon.tsv
2.67 kB
genome region.png
253.63 kB
positional_distribution_other_exon.tsv
112.90 kB
intron region.png
202.12 kB
kmer_frequency_genome.tsv
5.88 kB
K-mers
kmer_frequency_ncRNA.tsv
5.87 kB
other_exon region.png
260.52 kB
kmer_frequency_intron.tsv
5.80 kB
positional_distribution_intron.tsv
295.31 kB
positional_distribution_ncRNA.tsv
497.49 kB
ncRNA region.png
267.00 kB
intron region.png
249.17 kB
kmer_frequency_utr3.tsv
5.23 kB
positional_distribution_genome.tsv
531.57 kB
positional_distribution_utr3.tsv
204.03 kB
kmer_frequency_genome.tsv
5.80 kB
utr3 region.png
237.07 kB
kmer_frequency_other_exon.tsv
5.74 kB
genome region.png
292.15 kB
positional_distribution_other_exon.tsv
278.86 kB
K-mers
kmer_frequency_intron.tsv
5.50 kB
positional_distribution_ncRNA.tsv
377.17 kB
positional_distribution_intron.tsv
191.89 kB
intron region.png
218.07 kB
other_exon region.png
165.27 kB
ncRNA region.png
313.22 kB
utr3 region.png
147.60 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_utr3.tsv
137.51 kB
kmer_frequency_utr3.tsv
3.77 kB
positional_distribution_other_exon.tsv
126.53 kB
genome region.png
305.53 kB
positional_distribution_genome.tsv
446.88 kB
kmer_frequency_other_exon.tsv
3.27 kB
K-mers
kmer_frequency_other_exon.tsv
2.97 kB
kmer_frequency_intron.tsv
5.32 kB
other_exon region.png
154.69 kB
intron region.png
197.98 kB
positional_distribution_ncRNA.tsv
386.01 kB
positional_distribution_utr3.tsv
127.77 kB
positional_distribution_intron.tsv
173.62 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_genome.tsv
5.86 kB
utr3 region.png
135.87 kB
positional_distribution_other_exon.tsv
127.32 kB
ncRNA region.png
265.90 kB
kmer_frequency_utr3.tsv
3.24 kB
genome region.png
328.58 kB
positional_distribution_genome.tsv
442.04 kB
K-mers
kmer_frequency_intron.tsv
5.89 kB
other_exon region.png
275.50 kB
positional_distribution_ncRNA.tsv
425.46 kB
intron region.png
224.10 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_utr3.tsv
4.34 kB
positional_distribution_intron.tsv
270.81 kB
kmer_frequency_genome.tsv
5.80 kB
utr3 region.png
151.10 kB
positional_distribution_utr3.tsv
165.28 kB
positional_distribution_genome.tsv
508.11 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_other_exon.tsv
200.53 kB
ncRNA region.png
283.35 kB
genome region.png
319.77 kB
K-mers
other_exon region.png
257.49 kB
positional_distribution_intron.tsv
283.29 kB
kmer_frequency_ncRNA.tsv
5.87 kB
ncRNA region.png
271.96 kB
utr3 region.png
184.72 kB
kmer_frequency_utr3.tsv
4.41 kB
kmer_frequency_other_exon.tsv
5.55 kB
positional_distribution_utr3.tsv
170.15 kB
positional_distribution_genome.tsv
523.92 kB
intron region.png
210.64 kB
positional_distribution_other_exon.tsv
231.33 kB
kmer_frequency_intron.tsv
5.83 kB
kmer_frequency_genome.tsv
5.78 kB
genome region.png
230.51 kB
positional_distribution_ncRNA.tsv
477.74 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.45 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.38 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.94 MB
Paraclu
peaks.bed.gz
17.49 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.22 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
608.16 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
95.47 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
300.38 kB
K-mers
kmer_frequency_genome.tsv
5.84 kB
positional_distribution_intron.tsv
145.74 kB
kmer_frequency_intron.tsv
4.40 kB
other_exon region.png
116.21 kB
positional_distribution_ncRNA.tsv
226.85 kB
kmer_frequency_ncRNA.tsv
5.35 kB
intron region.png
177.83 kB
utr3 region.png
111.76 kB
kmer_frequency_utr3.tsv
772 B
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_genome.tsv
309.19 kB
kmer_frequency_other_exon.tsv
725 B
positional_distribution_other_exon.tsv
54.45 kB
genome region.png
216.78 kB
ncRNA region.png
263.19 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.46 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1018 B
K-mers
other_exon region.png
253.88 kB
kmer_frequency_ncRNA.tsv
5.83 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_intron.tsv
421.64 kB
positional_distribution_ncRNA.tsv
502.02 kB
positional_distribution_utr3.tsv
292.87 kB
kmer_frequency_utr3.tsv
5.35 kB
ncRNA region.png
287.11 kB
utr3 region.png
200.85 kB
genome region.png
281.31 kB
kmer_frequency_other_exon.tsv
5.83 kB
positional_distribution_genome.tsv
546.83 kB
positional_distribution_other_exon.tsv
400.63 kB
intron region.png
249.15 kB
kmer_frequency_genome.tsv
5.86 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.28 MB
iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
38.18 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
286.30 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
43.60 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
131.62 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.78 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
871.99 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.49 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
990.14 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
219.54 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.15 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
250.24 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
805.87 kB
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.31 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
54.82 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
242.55 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
21.84 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
25.25 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.49 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
88.25 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
31.06 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
265.25 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.76 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.14 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.29 MB
iCount RNA-maps
results.tar.gz
349.21 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
K-mers
positional_distribution_intron.tsv
202.77 kB
kmer_frequency_intron.tsv
5.26 kB
ncRNA region.png
259.83 kB
intron region.png
208.80 kB
positional_distribution_ncRNA.tsv
286.04 kB
positional_distribution_utr3.tsv
83.61 kB
kmer_frequency_genome.tsv
5.89 kB
genome region.png
240.31 kB
kmer_frequency_utr3.tsv
1.40 kB
positional_distribution_genome.tsv
415.13 kB
utr3 region.png
122.96 kB
kmer_frequency_ncRNA.tsv
5.63 kB
positional_distribution_other_exon.tsv
112.90 kB
kmer_frequency_other_exon.tsv
2.67 kB
other_exon region.png
193.47 kB
Paraclu
peaks.bed.gz
9.43 kB
iCount RNA-maps
results.tar.gz
418.89 kB
K-mers
kmer_frequency_ncRNA.tsv
5.54 kB
kmer_frequency_intron.tsv
5.14 kB
other_exon region.png
197.89 kB
positional_distribution_ncRNA.tsv
261.96 kB
kmer_frequency_utr3.tsv
1.14 kB
positional_distribution_intron.tsv
178.59 kB
positional_distribution_genome.tsv
362.28 kB
ncRNA region.png
231.95 kB
intron region.png
194.73 kB
positional_distribution_utr3.tsv
77.49 kB
utr3 region.png
124.44 kB
kmer_frequency_other_exon.tsv
3.10 kB
positional_distribution_other_exon.tsv
117.90 kB
genome region.png
230.97 kB
kmer_frequency_genome.tsv
5.89 kB
K-mers
other_exon region.png
117.97 kB
kmer_frequency_intron.tsv
4.75 kB
positional_distribution_ncRNA.tsv
226.53 kB
kmer_frequency_utr3.tsv
802 B
kmer_frequency_ncRNA.tsv
5.51 kB
positional_distribution_intron.tsv
151.03 kB
intron region.png
188.06 kB
positional_distribution_genome.tsv
309.40 kB
kmer_frequency_other_exon.tsv
1.19 kB
utr3 region.png
114.57 kB
ncRNA region.png
259.84 kB
kmer_frequency_genome.tsv
5.87 kB
positional_distribution_other_exon.tsv
75.03 kB
positional_distribution_utr3.tsv
53.05 kB
genome region.png
247.60 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.25 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
99.31 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
410.78 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
25.99 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
86.15 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
718 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
6.03 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
594.56 kB
Cutadapt (single-end)
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
65.56 MB
fastqc
Directory
report.txt
732 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
570.24 kB
Cutadapt (single-end)
report.txt
730 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
123.98 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
561.55 kB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
65.85 MB
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
541.92 kB
K-mers
intron region.png
176.54 kB
other_exon region.png
197.89 kB
positional_distribution_intron.tsv
176.21 kB
ncRNA region.png
231.95 kB
kmer_frequency_genome.tsv
5.89 kB
utr3 region.png
123.84 kB
kmer_frequency_other_exon.tsv
3.10 kB
kmer_frequency_ncRNA.tsv
5.54 kB
kmer_frequency_utr3.tsv
1.14 kB
positional_distribution_utr3.tsv
77.49 kB
positional_distribution_genome.tsv
356.35 kB
kmer_frequency_intron.tsv
5.14 kB
positional_distribution_other_exon.tsv
117.90 kB
genome region.png
228.88 kB
positional_distribution_ncRNA.tsv
261.96 kB
Cutadapt (single-end)
report.txt
726 B
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
78.33 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
551.80 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
72.57 MB
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
559.86 kB
K-mers
positional_distribution_intron.tsv
212.37 kB
intron region.png
183.04 kB
ncRNA region.png
268.52 kB
kmer_frequency_intron.tsv
5.40 kB
kmer_frequency_genome.tsv
5.87 kB
utr3 region.png
127.95 kB
positional_distribution_ncRNA.tsv
330.18 kB
kmer_frequency_utr3.tsv
2.47 kB
kmer_frequency_other_exon.tsv
2.87 kB
positional_distribution_other_exon.tsv
117.22 kB
positional_distribution_genome.tsv
425.32 kB
kmer_frequency_ncRNA.tsv
5.82 kB
positional_distribution_utr3.tsv
113.30 kB
other_exon region.png
160.44 kB
genome region.png
234.10 kB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
66.25 MB
fastqc
Directory
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
558.24 kB
Cutadapt (single-end)
report.txt
727 B
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
216.36 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
564.78 kB
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
24.01 MB
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
567.75 kB
Cutadapt (single-end)
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
321.85 MB
report.txt
732 B
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
557.41 kB
K-mers
other_exon region.png
165.27 kB
kmer_frequency_intron.tsv
5.50 kB
intron region.png
227.52 kB
positional_distribution_ncRNA.tsv
377.17 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_utr3.tsv
137.51 kB
positional_distribution_other_exon.tsv
126.53 kB
kmer_frequency_utr3.tsv
3.77 kB
positional_distribution_intron.tsv
191.89 kB
positional_distribution_genome.tsv
446.88 kB
genome region.png
305.66 kB
ncRNA region.png
308.91 kB
kmer_frequency_other_exon.tsv
3.27 kB
utr3 region.png
147.16 kB
K-mers
other_exon region.png
255.90 kB
kmer_frequency_intron.tsv
5.80 kB
positional_distribution_ncRNA.tsv
497.49 kB
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_utr3.tsv
5.23 kB
positional_distribution_utr3.tsv
204.03 kB
positional_distribution_genome.tsv
531.57 kB
intron region.png
249.17 kB
positional_distribution_intron.tsv
295.31 kB
genome region.png
292.15 kB
kmer_frequency_other_exon.tsv
5.74 kB
kmer_frequency_genome.tsv
5.80 kB
positional_distribution_other_exon.tsv
278.86 kB
ncRNA region.png
267.00 kB
utr3 region.png
236.96 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
553.42 kB
report.txt
730 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
194.15 MB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
201.51 MB
report.txt
727 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
536.12 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
545.18 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
344.98 MB
report.txt
727 B
Cutadapt (single-end)
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
78.33 MB
report.txt
730 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
549.12 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
70.06 MB
report.txt
727 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
550.45 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
726 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
141.36 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
551.95 kB
K-mers
other_exon region.png
154.69 kB
intron region.png
197.86 kB
positional_distribution_intron.tsv
173.62 kB
kmer_frequency_genome.tsv
5.86 kB
ncRNA region.png
265.28 kB
kmer_frequency_utr3.tsv
3.24 kB
kmer_frequency_intron.tsv
5.32 kB
utr3 region.png
135.87 kB
positional_distribution_utr3.tsv
127.77 kB
positional_distribution_genome.tsv
442.04 kB
positional_distribution_ncRNA.tsv
386.01 kB
kmer_frequency_other_exon.tsv
2.97 kB
positional_distribution_other_exon.tsv
127.32 kB
genome region.png
332.16 kB
kmer_frequency_ncRNA.tsv
5.88 kB
K-mers
kmer_frequency_ncRNA.tsv
5.50 kB
positional_distribution_intron.tsv
168.81 kB
positional_distribution_utr3.tsv
59.73 kB
ncRNA region.png
233.79 kB
genome region.png
233.89 kB
kmer_frequency_intron.tsv
4.92 kB
intron region.png
189.83 kB
positional_distribution_ncRNA.tsv
255.04 kB
utr3 region.png
125.77 kB
other_exon region.png
148.01 kB
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_utr3.tsv
868 B
kmer_frequency_other_exon.tsv
1.51 kB
positional_distribution_other_exon.tsv
85.02 kB
positional_distribution_genome.tsv
349.60 kB
K-mers
other_exon region.png
117.84 kB
kmer_frequency_ncRNA.tsv
5.51 kB
kmer_frequency_intron.tsv
4.75 kB
intron region.png
189.41 kB
positional_distribution_ncRNA.tsv
226.53 kB
positional_distribution_intron.tsv
151.03 kB
kmer_frequency_genome.tsv
5.87 kB
kmer_frequency_utr3.tsv
802 B
positional_distribution_utr3.tsv
53.05 kB
ncRNA region.png
264.45 kB
positional_distribution_other_exon.tsv
75.03 kB
genome region.png
241.50 kB
kmer_frequency_other_exon.tsv
1.19 kB
positional_distribution_genome.tsv
305.31 kB
utr3 region.png
114.57 kB
K-mers
other_exon region.png
116.11 kB
kmer_frequency_intron.tsv
4.40 kB
positional_distribution_ncRNA.tsv
226.85 kB
positional_distribution_intron.tsv
145.74 kB
intron region.png
177.83 kB
ncRNA region.png
263.19 kB
kmer_frequency_other_exon.tsv
725 B
kmer_frequency_ncRNA.tsv
5.35 kB
kmer_frequency_genome.tsv
5.84 kB
kmer_frequency_utr3.tsv
772 B
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_other_exon.tsv
54.45 kB
positional_distribution_genome.tsv
309.50 kB
utr3 region.png
111.76 kB
genome region.png
217.08 kB
K-mers
kmer_frequency_ncRNA.tsv
5.63 kB
other_exon region.png
193.47 kB
intron region.png
208.25 kB
positional_distribution_utr3.tsv
83.61 kB
kmer_frequency_intron.tsv
5.26 kB
positional_distribution_intron.tsv
202.77 kB
genome region.png
243.50 kB
kmer_frequency_genome.tsv
5.89 kB
kmer_frequency_utr3.tsv
1.40 kB
positional_distribution_ncRNA.tsv
286.04 kB
positional_distribution_genome.tsv
415.13 kB
utr3 region.png
122.68 kB
kmer_frequency_other_exon.tsv
2.67 kB
positional_distribution_other_exon.tsv
112.90 kB
ncRNA region.png
259.83 kB
K-mers
positional_distribution_intron.tsv
255.25 kB
kmer_frequency_ncRNA.tsv
5.89 kB
ncRNA region.png
256.40 kB
intron region.png
240.03 kB
other_exon region.png
252.04 kB
kmer_frequency_genome.tsv
5.80 kB
kmer_frequency_utr3.tsv
4.54 kB
kmer_frequency_intron.tsv
5.73 kB
positional_distribution_other_exon.tsv
207.53 kB
positional_distribution_utr3.tsv
169.28 kB
positional_distribution_genome.tsv
502.16 kB
kmer_frequency_other_exon.tsv
5.34 kB
positional_distribution_ncRNA.tsv
427.15 kB
genome region.png
280.20 kB
utr3 region.png
140.78 kB
K-mers
intron region.png
263.38 kB
other_exon region.png
253.33 kB
kmer_frequency_intron.tsv
5.78 kB
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_utr3.tsv
204.03 kB
kmer_frequency_utr3.tsv
5.23 kB
positional_distribution_ncRNA.tsv
495.86 kB
positional_distribution_genome.tsv
529.69 kB
positional_distribution_intron.tsv
290.68 kB
genome region.png
293.80 kB
positional_distribution_other_exon.tsv
278.00 kB
kmer_frequency_ncRNA.tsv
5.86 kB
kmer_frequency_other_exon.tsv
5.74 kB
utr3 region.png
237.07 kB
ncRNA region.png
272.68 kB
K-mers
kmer_frequency_intron.tsv
5.50 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_ncRNA.tsv
377.17 kB
positional_distribution_intron.tsv
191.89 kB
other_exon region.png
164.92 kB
ncRNA region.png
308.91 kB
intron region.png
219.45 kB
positional_distribution_utr3.tsv
134.41 kB
kmer_frequency_genome.tsv
5.85 kB
kmer_frequency_utr3.tsv
3.63 kB
utr3 region.png
134.17 kB
genome region.png
322.40 kB
kmer_frequency_other_exon.tsv
3.27 kB
positional_distribution_genome.tsv
447.00 kB
positional_distribution_other_exon.tsv
126.53 kB
K-mers
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_intron.tsv
5.89 kB
positional_distribution_ncRNA.tsv
425.46 kB
intron region.png
224.10 kB
positional_distribution_intron.tsv
270.81 kB
kmer_frequency_genome.tsv
5.80 kB
other_exon region.png
275.50 kB
ncRNA region.png
283.35 kB
positional_distribution_utr3.tsv
165.28 kB
kmer_frequency_utr3.tsv
4.34 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_genome.tsv
508.11 kB
genome region.png
320.22 kB
positional_distribution_other_exon.tsv
200.53 kB
utr3 region.png
150.08 kB
K-mers
kmer_frequency_intron.tsv
5.33 kB
kmer_frequency_ncRNA.tsv
5.88 kB
positional_distribution_ncRNA.tsv
373.69 kB
other_exon region.png
154.69 kB
positional_distribution_intron.tsv
172.24 kB
intron region.png
194.57 kB
ncRNA region.png
267.42 kB
positional_distribution_utr3.tsv
127.77 kB
kmer_frequency_other_exon.tsv
2.97 kB
utr3 region.png
135.84 kB
kmer_frequency_genome.tsv
5.86 kB
positional_distribution_other_exon.tsv
127.32 kB
genome region.png
292.08 kB
kmer_frequency_utr3.tsv
3.24 kB
positional_distribution_genome.tsv
438.73 kB
K-mers
kmer_frequency_intron.tsv
5.84 kB
positional_distribution_ncRNA.tsv
426.51 kB
intron region.png
224.63 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_genome.tsv
5.80 kB
other_exon region.png
274.84 kB
kmer_frequency_utr3.tsv
4.34 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_genome.tsv
506.61 kB
positional_distribution_other_exon.tsv
200.53 kB
utr3 region.png
149.69 kB
positional_distribution_utr3.tsv
165.28 kB
positional_distribution_intron.tsv
269.14 kB
genome region.png
318.90 kB
ncRNA region.png
282.91 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
616.03 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
79.28 MB
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
412 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
894 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
36.43 kB
K-mers
kmer_frequency_ncRNA.tsv
5.87 kB
other_exon region.png
257.49 kB
kmer_frequency_utr3.tsv
4.41 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_genome.tsv
523.92 kB
positional_distribution_intron.tsv
283.29 kB
kmer_frequency_other_exon.tsv
5.55 kB
positional_distribution_ncRNA.tsv
477.74 kB
utr3 region.png
184.72 kB
ncRNA region.png
271.49 kB
intron region.png
210.64 kB
positional_distribution_other_exon.tsv
231.33 kB
positional_distribution_utr3.tsv
170.15 kB
kmer_frequency_genome.tsv
5.78 kB
genome region.png
230.51 kB
K-mers
positional_distribution_intron.tsv
263.64 kB
other_exon region.png
252.04 kB
kmer_frequency_intron.tsv
5.80 kB
positional_distribution_utr3.tsv
173.30 kB
positional_distribution_ncRNA.tsv
428.10 kB
ncRNA region.png
256.32 kB
kmer_frequency_other_exon.tsv
5.34 kB
utr3 region.png
148.23 kB
genome region.png
282.52 kB
intron region.png
262.96 kB
kmer_frequency_utr3.tsv
4.63 kB
positional_distribution_other_exon.tsv
207.53 kB
kmer_frequency_ncRNA.tsv
5.88 kB
positional_distribution_genome.tsv
505.72 kB
kmer_frequency_genome.tsv
5.79 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
354.42 MB
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
559.23 kB
stderr.txt
1.73 kB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
25.42 MB
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
592.32 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
74.59 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
593.48 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
253.98 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
65.00 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
71.38 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.83 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
293.32 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.93 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.45 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
28.18 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.36 kB
iCount RNA-maps
results.tar.gz
352.01 kB
Paraclu
peaks.bed.gz
2.51 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
282.65 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
987 B
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
995 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
625.51 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
432 B
K-mers
kmer_frequency_ncRNA.tsv
5.83 kB
intron region.png
250.00 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_intron.tsv
5.83 kB
other_exon region.png
253.88 kB
positional_distribution_ncRNA.tsv
502.02 kB
positional_distribution_intron.tsv
421.64 kB
kmer_frequency_utr3.tsv
5.35 kB
kmer_frequency_other_exon.tsv
5.83 kB
ncRNA region.png
287.11 kB
positional_distribution_utr3.tsv
292.87 kB
positional_distribution_genome.tsv
546.83 kB
positional_distribution_other_exon.tsv
400.63 kB
utr3 region.png
225.79 kB
genome region.png
284.85 kB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
559.36 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
9.02 MB
stderr.txt
1.58 kB
iCount RNA-maps
results.tar.gz
280.04 kB
Paraclu
peaks.bed.gz
118 B
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
70.00 MB
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
594.78 kB
iCount RNA-maps
results.tar.gz
352.02 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
65.56 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
570.24 kB
report.txt
732 B
Paraclu
peaks.bed.gz
1.04 kB
FASTQ file (single-end)
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
130.88 MB
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
612.29 kB
Paraclu
peaks.bed.gz
3.80 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
72.61 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
572.29 kB
Paraclu
peaks.bed.gz
2.51 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
82.87 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
599.09 kB
stderr.txt
1.73 kB
Paraclu
peaks.bed.gz
2.48 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
999 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
434 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
756.59 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1001 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
674.17 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
229.79 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
615.09 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
633.36 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
results.tar.gz
429.03 kB
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
964 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
204.66 kB
Paraclu
peaks.bed.gz
507 B
K-mers
other_exon region.png
132.40 kB
positional_distribution_utr3.tsv
32.32 kB
genome region.png
226.01 kB
kmer_frequency_ncRNA.tsv
4.56 kB
kmer_frequency_intron.tsv
893 B
positional_distribution_intron.tsv
49.68 kB
kmer_frequency_utr3.tsv
420 B
intron region.png
116.19 kB
ncRNA region.png
235.75 kB
positional_distribution_ncRNA.tsv
161.51 kB
positional_distribution_genome.tsv
188.54 kB
positional_distribution_other_exon.tsv
68.40 kB
utr3 region.png
110.02 kB
kmer_frequency_genome.tsv
5.43 kB
kmer_frequency_other_exon.tsv
1.08 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
333.07 MB
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
581.44 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.06 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
439 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1015 B
iCount RNA-maps
results.tar.gz
788.51 kB
Paraclu
peaks.bed.gz
6.01 kB
iCount RNA-maps
results.tar.gz
418.89 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
345.12 kB
Paraclu
peaks.bed.gz
7.72 kB
K-mers
kmer_frequency_ncRNA.tsv
5.86 kB
other_exon region.png
309.36 kB
kmer_frequency_intron.tsv
5.80 kB
positional_distribution_intron.tsv
277.32 kB
positional_distribution_ncRNA.tsv
474.59 kB
intron region.png
219.87 kB
kmer_frequency_utr3.tsv
4.41 kB
kmer_frequency_other_exon.tsv
5.53 kB
ncRNA region.png
270.74 kB
positional_distribution_utr3.tsv
170.15 kB
kmer_frequency_genome.tsv
5.80 kB
positional_distribution_other_exon.tsv
240.59 kB
positional_distribution_genome.tsv
517.70 kB
utr3 region.png
184.72 kB
genome region.png
276.90 kB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
207.75 MB
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
560.23 kB
stderr.txt
1.75 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1016 B
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
423 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
331.05 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
980 B
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
439 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1015 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.06 MB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.12 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
417 B
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1017 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.45 MB
Paraclu
peaks.bed.gz
17.18 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
81.78 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
570.94 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1010 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.27 MB
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
964 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
204.66 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1000 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
K-mers
positional_distribution_intron.tsv
191.89 kB
kmer_frequency_ncRNA.tsv
5.87 kB
ncRNA region.png
308.75 kB
other_exon region.png
164.92 kB
kmer_frequency_intron.tsv
5.50 kB
positional_distribution_ncRNA.tsv
377.17 kB
positional_distribution_utr3.tsv
134.41 kB
intron region.png
218.38 kB
genome region.png
321.17 kB
utr3 region.png
134.30 kB
kmer_frequency_genome.tsv
5.85 kB
positional_distribution_other_exon.tsv
126.53 kB
kmer_frequency_other_exon.tsv
3.27 kB
kmer_frequency_utr3.tsv
3.63 kB
positional_distribution_genome.tsv
447.00 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
72.56 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.43 kB
stderr.txt
1.75 kB
iCount RNA-maps
results.tar.gz
571.65 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1000 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
K-mers
kmer_frequency_intron.tsv
5.33 kB
positional_distribution_ncRNA.tsv
373.69 kB
positional_distribution_intron.tsv
172.24 kB
ncRNA region.png
266.79 kB
kmer_frequency_utr3.tsv
3.24 kB
other_exon region.png
154.69 kB
positional_distribution_genome.tsv
438.73 kB
kmer_frequency_ncRNA.tsv
5.88 kB
utr3 region.png
135.87 kB
intron region.png
194.57 kB
positional_distribution_utr3.tsv
127.77 kB
kmer_frequency_other_exon.tsv
2.97 kB
positional_distribution_other_exon.tsv
127.32 kB
kmer_frequency_genome.tsv
5.86 kB
genome region.png
292.08 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
147.18 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
570.13 kB
stderr.txt
1.73 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
726 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
551.95 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
141.36 MB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1009 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.24 MB
K-mers
kmer_frequency_ncRNA.tsv
5.88 kB
other_exon region.png
275.50 kB
positional_distribution_intron.tsv
269.14 kB
intron region.png
224.63 kB
kmer_frequency_intron.tsv
5.84 kB
kmer_frequency_utr3.tsv
4.34 kB
ncRNA region.png
280.28 kB
kmer_frequency_genome.tsv
5.80 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_genome.tsv
506.61 kB
positional_distribution_ncRNA.tsv
426.51 kB
positional_distribution_other_exon.tsv
200.53 kB
utr3 region.png
150.08 kB
positional_distribution_utr3.tsv
165.28 kB
genome region.png
318.90 kB
STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
13.84 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
5.54 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
1.63 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
4.52 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
18.88 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
39.55 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
1.99 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
186.17 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.99 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
20.97 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
349.55 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
76.13 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.88 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
70.77 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.92 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1009 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.24 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.44 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.14 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.84 MB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.96 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
117.31 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
16.83 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.88 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
14.91 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1017 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.45 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
Paraclu
peaks.bed.gz
17.18 kB
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
6.03 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
594.56 kB
report.txt
718 B
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
65.85 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
541.92 kB
report.txt
728 B
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
200.02 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.19 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
21.25 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
45.46 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
21.81 kB
Cutadapt (single-end)
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
78.33 MB
report.txt
726 B
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
551.80 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
123.98 MB
report.txt
730 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
561.55 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
63.40 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
496.89 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
71.31 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
219.56 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
Paraclu
peaks.bed.gz
252 B
Cutadapt (single-end)
report.txt
731 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
559.86 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
72.57 MB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
558.24 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
66.25 MB
report.txt
728 B
Cutadapt (single-end)
fastqc
Directory
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
24.01 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
567.75 kB
Cutadapt (single-end)
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
216.36 MB
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
564.78 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
173.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.21 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
24.12 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.01 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
43.09 MB
Cutadapt (single-end)
report.txt
732 B
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
321.85 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
557.41 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
553.42 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
194.15 MB
report.txt
730 B
iCount RNA-maps
results.tar.gz
280.04 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
78.33 MB
report.txt
730 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
549.12 kB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
201.51 MB
fastqc
Directory
report.txt
727 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
536.12 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
70.06 MB
report.txt
727 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
550.45 kB
Cutadapt (single-end)
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
344.98 MB
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
545.18 kB
Paraclu
peaks.bed.gz
9.43 kB
STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
157.91 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.65 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
212.73 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.42 GB
STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
4.52 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
1.63 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
13.84 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
5.54 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
18.88 kB
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
186.17 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
39.55 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
1.99 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.99 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
20.97 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
37.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.72 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
184.74 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
53.77 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
23.58 kB
iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
7.46 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
114.32 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
23.80 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
8.14 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
76.13 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
349.55 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.88 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
70.77 kB
Paraclu
peaks.bed.gz
118 B
iCount RNA-maps
results.tar.gz
417.76 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
208.30 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
340.42 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
60.10 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
67.71 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
45.99 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.62 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
239.06 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
23.35 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
46.23 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.74 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
808.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
703.30 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
190.81 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
268.39 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
999.20 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
308.60 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1016.39 kB
Paraclu
peaks.bed.gz
3.80 kB
iCount RNA-maps
results.tar.gz
349.21 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1016 B
iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
167.68 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
36.23 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
125.25 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
41.50 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
50.05 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.18 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
158.20 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
337.72 MB
Paraclu
peaks.bed.gz
507 B
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
83.37 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
93.48 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
294.29 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
467.93 kB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.70 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
9.91 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
13.07 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
102.38 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.04 kB
Paraclu
peaks.bed.gz
1.88 kB
iCount RNA-maps
results.tar.gz
357.31 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.19 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
45.46 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
200.02 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
21.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
21.25 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
213.19 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
693.01 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
771.31 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
187.37 kB
Paraclu
peaks.bed.gz
2.48 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
96.63 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
302.24 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.59 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
457.71 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
216.29 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
794.33 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
952.27 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
246.67 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1001 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
674.17 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
iCount RNA-maps
results.tar.gz
429.02 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
4.84 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.13 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.27 MB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
173.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
43.09 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.21 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
24.12 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.01 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
872.45 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
739.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.97 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.94 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
986.28 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.48 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.52 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
868.63 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.43 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.46 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.11 MB
iCount RNA-maps
results.tar.gz
606.91 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
837.74 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.14 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
735.42 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.93 MB
STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
139.04 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.90 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
616.96 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
56.65 kB
STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
157.91 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.42 GB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.65 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
212.73 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.00 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
747.46 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
880.64 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.98 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
145.88 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
36.91 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
304.90 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bw
31.09 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
32.47 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
283.75 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.83 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
112.94 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
80.63 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
847.57 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.35 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
365.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
iCount RNA-maps
results.tar.gz
281.28 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.14 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.30 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.82 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.19 MB
STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
457.90 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.80 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.67 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
169.59 MB
iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
13.85 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
330.49 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
14.95 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
43.66 kB
K-mers
other_exon region.png
253.43 kB
positional_distribution_intron.tsv
418.65 kB
intron region.png
251.88 kB
positional_distribution_utr3.tsv
292.87 kB
ncRNA region.png
266.12 kB
kmer_frequency_intron.tsv
5.80 kB
kmer_frequency_utr3.tsv
5.35 kB
kmer_frequency_genome.tsv
5.88 kB
positional_distribution_ncRNA.tsv
500.77 kB
genome region.png
273.95 kB
utr3 region.png
225.79 kB
positional_distribution_other_exon.tsv
397.77 kB
positional_distribution_genome.tsv
545.37 kB
kmer_frequency_other_exon.tsv
5.83 kB
kmer_frequency_ncRNA.tsv
5.83 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
272.92 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1.01 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.23 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
313.64 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
195.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
223.14 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.07 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
721.12 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
191.21 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
963.69 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.50 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
706.60 kB
iCount RNA-maps
results.tar.gz
430.48 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
87.38 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
589.53 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
98.58 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
308.45 kB
iCount RNA-maps
results.tar.gz
859.59 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
166.54 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
564.79 kB
stderr.txt
1.73 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
573.76 kB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
98.91 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
297.96 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
612.44 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
31.11 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
607.03 kB
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
416 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
56.50 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
906 B
K-mers
kmer_frequency_ncRNA.tsv
794 B
kmer_frequency_intron.tsv
447 B
positional_distribution_ncRNA.tsv
62.82 kB
kmer_frequency_utr3.tsv
447 B
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_intron.tsv
31.53 kB
other_exon region.png
113.21 kB
positional_distribution_genome.tsv
125.92 kB
genome region.png
161.42 kB
ncRNA region.png
136.89 kB
intron region.png
114.92 kB
utr3 region.png
115.60 kB
kmer_frequency_other_exon.tsv
426 B
positional_distribution_other_exon.tsv
31.62 kB
kmer_frequency_genome.tsv
3.83 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
93.29 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
597.99 kB
stderr.txt
1.83 kB
Paraclu
peaks.bed.gz
6.41 kB
iCount RNA-maps
results.tar.gz
353.78 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
290.24 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
982 B
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
623.32 kB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
163.95 MB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
770.78 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1001 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
Paraclu
peaks.bed.gz
3.85 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
110.74 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
578.93 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
630.30 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
999 B
Paraclu
peaks.bed.gz
2.58 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
106.33 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
602.78 kB
Paraclu
peaks.bed.gz
2.53 kB
Paraclu
peaks.bed.gz
1.92 kB
FASTQ file (single-end)
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
132.37 MB
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
594.93 kB
iCount RNA-maps
results.tar.gz
362.73 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
348.18 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
results.tar.gz
356.94 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
129.67 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
588.42 kB
Paraclu
peaks.bed.gz
1.87 kB
Paraclu
peaks.bed.gz
4.15 kB
iCount RNA-maps
results.tar.gz
788.06 kB
FASTQ file (single-end)
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
30.56 MB
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
594.40 kB
stderr.txt
1.58 kB
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
206.55 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
977 B
Paraclu
peaks.bed.gz
559 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
374.63 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
582.33 kB
Paraclu
peaks.bed.gz
8.30 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
218.72 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
566.59 kB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
221.36 MB
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
556.78 kB
Paraclu
peaks.bed.gz
9.64 kB
iCount RNA-maps
results.tar.gz
1.07 MB
Paraclu
peaks.bed.gz
17.49 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
379.53 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
559.28 kB
stderr.txt
1.73 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1018 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.46 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
83.92 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.65 kB
Paraclu
peaks.bed.gz
7.30 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.24 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1008 B
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
23.84 MB
report.txt
718 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
595.21 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
732 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
84.95 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
552.06 kB
Cutadapt (single-end)
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
149.23 MB
fastqc
Directory
report.txt
731 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
566.07 kB
Cutadapt (single-end)
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
96.05 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
532.55 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
96.72 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
557.33 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
116.98 MB
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
562.36 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
112.67 MB
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
559.51 kB
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
28.76 MB
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
588.92 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
209.37 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
547.47 kB
report.txt
731 B
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
212.34 MB
fastqc
Directory
report.txt
728 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
533.24 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
728 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
273.24 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
568.08 kB
Cutadapt (single-end)
report.txt
732 B
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
358.82 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
566.65 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
92.28 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
538.84 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
78.70 MB
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
562.38 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
541.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
365.71 MB
report.txt
727 B
FASTQ file (single-end)
stderr.txt
1.81 kB
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
163.95 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
623.32 kB
FASTQ file (single-end)
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
31.11 MB
fastqc
Directory
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
607.03 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.29 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.14 MB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
840.85 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
738.39 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.94 MB
iCount RNA-maps
results.tar.gz
570.10 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
872.00 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.78 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.49 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
990.14 kB

SDMA_HCT116_AZ 9458 100nM 1_48h_cut above 50kDa_20181116_JU

iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1003 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
576.85 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
82.59 MB
fastqc
Directory
stderr.txt
1.75 kB
Paraclu
peaks.bed.gz
3.55 kB
K-mers
other_exon region.png
154.33 kB
positional_distribution_utr3.tsv
127.77 kB
kmer_frequency_utr3.tsv
3.24 kB
positional_distribution_intron.tsv
173.62 kB
genome region.png
328.58 kB
positional_distribution_genome.tsv
442.04 kB
intron region.png
197.98 kB
ncRNA region.png
266.35 kB
positional_distribution_other_exon.tsv
127.32 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_other_exon.tsv
2.97 kB
utr3 region.png
135.84 kB
kmer_frequency_intron.tsv
5.32 kB
positional_distribution_ncRNA.tsv
386.01 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
77.82 MB
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
563.22 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
39.81 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
301.68 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
122.94 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
840.85 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
738.39 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.94 MB
iCount RNA-maps
results.tar.gz
570.10 kB

SDMA_HCT116_Control DMSO 2_48h_cut above 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
1.16 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
563.00 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
374.22 MB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.45 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.38 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.94 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.46 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1018 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
Paraclu
peaks.bed.gz
17.49 kB
Cutadapt (single-end)
report.txt
727 B
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
361.91 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
546.26 kB
K-mers
other_exon region.png
253.11 kB
kmer_frequency_ncRNA.tsv
5.83 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_intron.tsv
421.64 kB
intron region.png
250.00 kB
positional_distribution_ncRNA.tsv
502.02 kB
kmer_frequency_utr3.tsv
5.35 kB
ncRNA region.png
287.05 kB
kmer_frequency_other_exon.tsv
5.83 kB
utr3 region.png
225.79 kB
kmer_frequency_genome.tsv
5.86 kB
positional_distribution_utr3.tsv
292.87 kB
positional_distribution_genome.tsv
546.83 kB
positional_distribution_other_exon.tsv
400.63 kB
genome region.png
284.85 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.78 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.65 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
167.76 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
457.90 kB

SDMA_HCT116_AZ 9458 100nM 2_48h_cut above 50kDa_20181116_JU

iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1014 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
Paraclu
peaks.bed.gz
9.64 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
218.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
558.17 kB
stderr.txt
1.75 kB
iCount RNA-maps
results.tar.gz
1.08 MB
K-mers
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_intron.tsv
5.80 kB
intron region.png
249.17 kB
other_exon region.png
260.96 kB
positional_distribution_ncRNA.tsv
497.49 kB
kmer_frequency_genome.tsv
5.80 kB
kmer_frequency_utr3.tsv
5.23 kB
positional_distribution_intron.tsv
295.31 kB
positional_distribution_genome.tsv
531.57 kB
ncRNA region.png
267.00 kB
utr3 region.png
237.07 kB
positional_distribution_utr3.tsv
204.03 kB
kmer_frequency_other_exon.tsv
5.74 kB
positional_distribution_other_exon.tsv
278.86 kB
genome region.png
290.59 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
534.69 kB
report.txt
728 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
209.93 MB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.53 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
873.37 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.48 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
381.65 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.29 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.14 MB

SDMA_HCT116_GSK3326595 500nM 2_48h_cut above 50kDa_20181116_JU

iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.84 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.44 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.14 MB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.28 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
213.04 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.06 kB
stderr.txt
1.81 kB
iCount RNA-maps
results.tar.gz
949.83 kB
Paraclu
peaks.bed.gz
8.30 kB
K-mers
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_ncRNA.tsv
477.74 kB
other_exon region.png
258.65 kB
kmer_frequency_utr3.tsv
4.41 kB
intron region.png
211.07 kB
positional_distribution_intron.tsv
283.29 kB
positional_distribution_genome.tsv
523.92 kB
kmer_frequency_genome.tsv
5.78 kB
ncRNA region.png
271.49 kB
positional_distribution_utr3.tsv
170.15 kB
kmer_frequency_other_exon.tsv
5.55 kB
genome region.png
230.51 kB
positional_distribution_other_exon.tsv
231.33 kB
utr3 region.png
184.90 kB
Cutadapt (single-end)
report.txt
731 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
556.22 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
205.23 MB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
88.98 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.43 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
266.51 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
969.45 MB

SDMA_HEK293_Non crosslinked control_cut above 50kDa_20181116_JU

iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.00 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
747.46 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
880.64 kB
iCount RNA-maps
results.tar.gz
788.07 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
368.90 MB
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
580.98 kB
Paraclu
peaks.bed.gz
6.41 kB
K-mers
other_exon region.png
251.90 kB
intron region.png
262.96 kB
positional_distribution_intron.tsv
263.64 kB
kmer_frequency_intron.tsv
5.80 kB
kmer_frequency_utr3.tsv
4.63 kB
kmer_frequency_genome.tsv
5.79 kB
kmer_frequency_ncRNA.tsv
5.88 kB
ncRNA region.png
256.32 kB
positional_distribution_genome.tsv
505.72 kB
positional_distribution_ncRNA.tsv
428.10 kB
positional_distribution_utr3.tsv
173.30 kB
positional_distribution_other_exon.tsv
207.53 kB
kmer_frequency_other_exon.tsv
5.34 kB
utr3 region.png
148.48 kB
genome region.png
282.80 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
354.90 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
565.51 kB
report.txt
732 B
STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.07 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
183.79 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
226.00 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.51 GB

SDMA_HCT116_Control DMSO 2_48h_cut below 50kDa_20181116_JU

iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
637.78 kB
iCount RNA-maps
results.tar.gz
421.34 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
103.92 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
608.90 kB
Paraclu
peaks.bed.gz
2.53 kB
K-mers
other_exon region.png
148.11 kB
kmer_frequency_ncRNA.tsv
5.50 kB
intron region.png
193.83 kB
positional_distribution_intron.tsv
170.63 kB
kmer_frequency_utr3.tsv
868 B
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_intron.tsv
4.92 kB
positional_distribution_genome.tsv
351.74 kB
ncRNA region.png
233.79 kB
utr3 region.png
125.77 kB
positional_distribution_ncRNA.tsv
255.04 kB
positional_distribution_utr3.tsv
59.73 kB
kmer_frequency_other_exon.tsv
1.51 kB
positional_distribution_other_exon.tsv
85.02 kB
genome region.png
233.18 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
94.76 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
563.76 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
276.87 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
61.12 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
58.72 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.93 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.14 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
191.21 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
963.68 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.50 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
706.60 kB

SDMA_HCT116_Control DMSO 1_48h_cut above 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
859.92 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
163.98 MB
stderr.txt
1.73 kB
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
566.86 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
564.30 kB
report.txt
727 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
154.94 MB
STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.45 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.46 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
230.58 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
592.07 MB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.15 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.56 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.31 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.84 MB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1007 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.25 MB
Paraclu
peaks.bed.gz
7.30 kB
K-mers
kmer_frequency_intron.tsv
5.89 kB
other_exon region.png
275.50 kB
positional_distribution_ncRNA.tsv
425.46 kB
intron region.png
224.10 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_utr3.tsv
4.34 kB
positional_distribution_intron.tsv
270.81 kB
kmer_frequency_genome.tsv
5.80 kB
utr3 region.png
151.10 kB
positional_distribution_utr3.tsv
165.28 kB
positional_distribution_genome.tsv
508.11 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_other_exon.tsv
200.53 kB
ncRNA region.png
283.35 kB
genome region.png
319.77 kB

SDMA_HCT116_GSK3326595 500nM 1_48h_cut above 50kDa_20181116_JU

Paraclu
peaks.bed.gz
4.09 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
582.45 kB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
97.27 MB
iCount RNA-maps
results.tar.gz
613.42 kB
Cutadapt (single-end)
report.txt
731 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
91.28 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
544.27 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
49.31 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
332.71 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.18 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
158.20 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
871.99 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.49 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
990.14 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.78 MB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1000 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.14 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
K-mers
kmer_frequency_intron.tsv
5.50 kB
positional_distribution_ncRNA.tsv
377.17 kB
positional_distribution_intron.tsv
191.89 kB
intron region.png
218.07 kB
other_exon region.png
165.27 kB
ncRNA region.png
313.22 kB
utr3 region.png
147.60 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_utr3.tsv
137.51 kB
kmer_frequency_utr3.tsv
3.77 kB
positional_distribution_other_exon.tsv
126.53 kB
genome region.png
305.53 kB
positional_distribution_genome.tsv
446.88 kB
kmer_frequency_other_exon.tsv
3.27 kB

SDMA_HCT116_GSK3326595 500nM 1_48h_cut above 50kDa_20181116_JU

K-mers
intron region.png
218.38 kB
positional_distribution_intron.tsv
191.89 kB
kmer_frequency_ncRNA.tsv
5.87 kB
ncRNA region.png
308.75 kB
other_exon region.png
164.92 kB
kmer_frequency_intron.tsv
5.50 kB
positional_distribution_ncRNA.tsv
377.17 kB
positional_distribution_utr3.tsv
134.41 kB
genome region.png
321.17 kB
utr3 region.png
134.30 kB
kmer_frequency_genome.tsv
5.85 kB
positional_distribution_other_exon.tsv
126.53 kB
kmer_frequency_other_exon.tsv
3.27 kB
kmer_frequency_utr3.tsv
3.63 kB
positional_distribution_genome.tsv
447.00 kB
iCount RNA-maps
results.tar.gz
606.90 kB
Paraclu
peaks.bed.gz
4.04 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
868.63 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
986.28 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.52 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.48 MB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
417 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.12 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
81.78 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
570.94 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
78.33 MB
report.txt
730 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
549.12 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.98 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
145.88 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
36.91 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
304.90 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bw
31.09 kB

SDMA_HCT116_Control DMSO 2_48h_cut above 50kDa_20181116_JU

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
374.22 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
563.00 kB
iCount RNA-maps
results.tar.gz
1.16 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
546.26 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
361.91 MB
STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.78 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
167.76 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.65 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
457.90 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.45 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.38 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.94 MB
Paraclu
peaks.bed.gz
17.49 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.46 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1018 B
K-mers
other_exon region.png
253.88 kB
kmer_frequency_ncRNA.tsv
5.83 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_intron.tsv
421.64 kB
positional_distribution_ncRNA.tsv
502.02 kB
positional_distribution_utr3.tsv
292.87 kB
kmer_frequency_utr3.tsv
5.35 kB
ncRNA region.png
287.11 kB
utr3 region.png
200.85 kB
genome region.png
281.31 kB
kmer_frequency_other_exon.tsv
5.83 kB
positional_distribution_genome.tsv
546.83 kB
positional_distribution_other_exon.tsv
400.63 kB
intron region.png
249.15 kB
kmer_frequency_genome.tsv
5.86 kB

IgG_HEK293_IgG control_cut above 50kDa_20181116_JU

FASTQ file (single-end)
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
30.06 MB
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
598.29 kB
stderr.txt
1.58 kB
Paraclu
peaks.bed.gz
559 B
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
28.37 MB
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
589.91 kB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.96 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
16.47 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
115.26 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.88 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
14.91 kB
iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
38.18 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
43.60 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
286.33 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
131.62 kB
iCount RNA-maps
results.tar.gz
358.80 kB
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
206.55 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
977 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
K-mers
other_exon region.png
169.68 kB
kmer_frequency_ncRNA.tsv
4.56 kB
kmer_frequency_intron.tsv
893 B
positional_distribution_intron.tsv
49.68 kB
intron region.png
116.19 kB
kmer_frequency_utr3.tsv
420 B
positional_distribution_ncRNA.tsv
161.51 kB
ncRNA region.png
235.89 kB
positional_distribution_genome.tsv
195.06 kB
positional_distribution_utr3.tsv
32.32 kB
kmer_frequency_genome.tsv
5.55 kB
utr3 region.png
110.02 kB
positional_distribution_other_exon.tsv
70.58 kB
kmer_frequency_other_exon.tsv
1.24 kB
genome region.png
210.61 kB

SDMA_HCT116_AZ 9458 100nM 1_48h_cut below 50kDa_20181116_JU

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
125.90 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
592.33 kB
stderr.txt
1.75 kB
Paraclu
peaks.bed.gz
1.87 kB
iCount RNA-maps
results.tar.gz
356.92 kB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
109.74 MB
fastqc
Directory
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
558.05 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
85.21 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.49 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
258.97 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
31.06 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.76 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
608.16 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
300.38 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
95.47 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.22 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
428 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
332.67 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
986 B
K-mers
kmer_frequency_ncRNA.tsv
5.35 kB
positional_distribution_intron.tsv
145.74 kB
intron region.png
178.23 kB
kmer_frequency_utr3.tsv
772 B
ncRNA region.png
261.16 kB
utr3 region.png
110.54 kB
kmer_frequency_other_exon.tsv
725 B
positional_distribution_genome.tsv
309.19 kB
kmer_frequency_genome.tsv
5.84 kB
other_exon region.png
116.11 kB
kmer_frequency_intron.tsv
4.40 kB
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_other_exon.tsv
54.45 kB
positional_distribution_ncRNA.tsv
226.85 kB
genome region.png
216.78 kB

SDMA_HCT116_Control DMSO 2_48h_cut below 50kDa_20181116_JU

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
103.92 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
608.90 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
637.78 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
iCount RNA-maps
results.tar.gz
421.35 kB
Cutadapt (single-end)
report.txt
727 B
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
563.76 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
94.76 MB
STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
58.72 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
61.12 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.14 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
276.87 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.93 MB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
963.68 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
191.21 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.50 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
706.60 kB
Paraclu
peaks.bed.gz
2.53 kB
K-mers
kmer_frequency_ncRNA.tsv
5.50 kB
kmer_frequency_intron.tsv
4.92 kB
positional_distribution_utr3.tsv
59.73 kB
positional_distribution_intron.tsv
170.63 kB
other_exon region.png
148.01 kB
positional_distribution_ncRNA.tsv
255.04 kB
utr3 region.png
125.77 kB
intron region.png
193.83 kB
genome region.png
233.18 kB
ncRNA region.png
233.79 kB
kmer_frequency_other_exon.tsv
1.51 kB
kmer_frequency_utr3.tsv
868 B
kmer_frequency_genome.tsv
5.88 kB
positional_distribution_other_exon.tsv
85.02 kB
positional_distribution_genome.tsv
351.74 kB

IgG_HEK293_IgG control_cut below 50kDa_20181116_JU

Paraclu
peaks.bed.gz
252 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
29.68 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
607.74 kB
Cutadapt (single-end)
report.txt
718 B
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
22.71 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
591.67 kB
STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
12.18 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.10 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
85.33 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
19.95 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.65 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
43.66 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
14.95 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
330.49 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
13.85 kB
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
906 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
416 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
56.50 kB
iCount RNA-maps
results.tar.gz
281.33 kB
K-mers
other_exon region.png
113.07 kB
kmer_frequency_utr3.tsv
447 B
positional_distribution_genome.tsv
125.92 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_intron.tsv
31.53 kB
intron region.png
114.92 kB
genome region.png
161.48 kB
ncRNA region.png
137.56 kB
utr3 region.png
114.50 kB
kmer_frequency_genome.tsv
3.83 kB
kmer_frequency_intron.tsv
447 B
kmer_frequency_ncRNA.tsv
794 B
positional_distribution_ncRNA.tsv
62.82 kB
kmer_frequency_other_exon.tsv
426 B
positional_distribution_other_exon.tsv
31.62 kB

igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
30.56 MB
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
594.40 kB

SDMA_HCT116_AZ 9458 100nM 2_48h_cut above 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
1.07 MB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.13 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
4.84 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.27 MB
K-mers
positional_distribution_intron.tsv
290.68 kB
kmer_frequency_intron.tsv
5.78 kB
ncRNA region.png
270.45 kB
positional_distribution_ncRNA.tsv
495.86 kB
kmer_frequency_utr3.tsv
5.23 kB
kmer_frequency_ncRNA.tsv
5.86 kB
intron region.png
263.89 kB
positional_distribution_utr3.tsv
204.03 kB
positional_distribution_genome.tsv
529.69 kB
utr3 region.png
236.96 kB
kmer_frequency_genome.tsv
5.79 kB
genome region.png
293.80 kB
kmer_frequency_other_exon.tsv
5.74 kB
other_exon region.png
253.42 kB
positional_distribution_other_exon.tsv
278.00 kB
Paraclu
peaks.bed.gz
9.43 kB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
207.75 MB
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
560.23 kB
stderr.txt
1.75 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1016 B
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
201.51 MB
fastqc
Directory
report.txt
727 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
536.12 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
80.63 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
847.57 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.35 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
365.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB

SDMA_HEK293_Non crosslinked control_cut above 50kDa_20181116_JU

iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.94 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
739.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.97 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
872.45 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
K-mers
kmer_frequency_intron.tsv
5.73 kB
positional_distribution_ncRNA.tsv
427.15 kB
other_exon region.png
252.04 kB
positional_distribution_intron.tsv
255.25 kB
kmer_frequency_ncRNA.tsv
5.89 kB
intron region.png
240.03 kB
kmer_frequency_utr3.tsv
4.54 kB
ncRNA region.png
256.26 kB
positional_distribution_utr3.tsv
169.28 kB
positional_distribution_genome.tsv
502.16 kB
kmer_frequency_other_exon.tsv
5.34 kB
utr3 region.png
140.99 kB
positional_distribution_other_exon.tsv
207.53 kB
genome region.png
280.37 kB
kmer_frequency_genome.tsv
5.80 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
333.07 MB
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
581.44 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.06 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
439 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1015 B
iCount RNA-maps
results.tar.gz
788.51 kB
Paraclu
peaks.bed.gz
6.01 kB
Cutadapt (single-end)
report.txt
732 B
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
321.85 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
557.41 kB
STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
157.91 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.42 GB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.65 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
212.73 kB

SDMA_HCT116_Control DMSO 1_48h_cut below 50kDa_20181116_JU

Paraclu
peaks.bed.gz
4.12 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
952.27 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
794.33 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
216.29 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
246.67 kB
K-mers
positional_distribution_intron.tsv
202.77 kB
kmer_frequency_intron.tsv
5.26 kB
ncRNA region.png
259.83 kB
intron region.png
208.80 kB
positional_distribution_ncRNA.tsv
286.04 kB
positional_distribution_utr3.tsv
83.61 kB
kmer_frequency_genome.tsv
5.89 kB
genome region.png
240.31 kB
kmer_frequency_utr3.tsv
1.40 kB
positional_distribution_genome.tsv
415.13 kB
utr3 region.png
122.96 kB
kmer_frequency_ncRNA.tsv
5.63 kB
positional_distribution_other_exon.tsv
112.90 kB
kmer_frequency_other_exon.tsv
2.67 kB
other_exon region.png
193.47 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1001 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
674.17 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
229.79 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
615.09 kB
iCount RNA-maps
results.tar.gz
429.03 kB
Cutadapt (single-end)
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
216.36 MB
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
564.78 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
139.04 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.90 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
616.96 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
56.65 kB

SDMA_HCT116_Control DMSO 2_48h_cut below 50kDa_20181116_JU

iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
187.37 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
771.31 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
213.19 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
693.01 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
633.36 kB
K-mers
other_exon region.png
148.01 kB
intron region.png
189.83 kB
positional_distribution_intron.tsv
168.81 kB
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_utr3.tsv
868 B
ncRNA region.png
233.79 kB
positional_distribution_utr3.tsv
59.73 kB
positional_distribution_genome.tsv
349.60 kB
kmer_frequency_ncRNA.tsv
5.50 kB
utr3 region.png
125.98 kB
genome region.png
233.71 kB
kmer_frequency_intron.tsv
4.92 kB
positional_distribution_other_exon.tsv
85.02 kB
kmer_frequency_other_exon.tsv
1.51 kB
positional_distribution_ncRNA.tsv
255.04 kB
iCount RNA-maps
results.tar.gz
418.89 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
82.87 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
599.09 kB
stderr.txt
1.73 kB
Paraclu
peaks.bed.gz
2.48 kB
Cutadapt (single-end)
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
78.33 MB
report.txt
726 B
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
551.80 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
45.99 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.62 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
239.06 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
23.35 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
46.23 kB

SDMA_HCT116_AZ 9458 100nM 2_48h_cut below 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
417.94 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
808.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
703.30 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
190.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.74 kB
K-mers
kmer_frequency_intron.tsv
5.14 kB
other_exon region.png
197.89 kB
positional_distribution_ncRNA.tsv
261.96 kB
kmer_frequency_ncRNA.tsv
5.54 kB
positional_distribution_intron.tsv
176.21 kB
intron region.png
176.66 kB
positional_distribution_utr3.tsv
77.49 kB
utr3 region.png
124.44 kB
kmer_frequency_genome.tsv
5.89 kB
ncRNA region.png
231.95 kB
genome region.png
228.88 kB
kmer_frequency_other_exon.tsv
3.10 kB
positional_distribution_other_exon.tsv
117.90 kB
kmer_frequency_utr3.tsv
1.14 kB
positional_distribution_genome.tsv
356.35 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
995 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
432 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
625.51 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
72.61 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
572.29 kB
Paraclu
peaks.bed.gz
2.51 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
65.85 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
541.92 kB
report.txt
728 B
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
37.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.72 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
184.74 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
53.77 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
23.58 kB

SDMA_HCT116_AZ 9458 100nM 1_48h_cut above 50kDa_20181116_JU

STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
32.47 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.83 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
283.75 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
112.94 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.43 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
72.56 MB
stderr.txt
1.75 kB
Paraclu
peaks.bed.gz
3.51 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
70.06 MB
report.txt
727 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
550.45 kB
K-mers
kmer_frequency_intron.tsv
5.33 kB
kmer_frequency_ncRNA.tsv
5.88 kB
positional_distribution_ncRNA.tsv
373.69 kB
other_exon region.png
154.69 kB
positional_distribution_intron.tsv
172.24 kB
intron region.png
194.57 kB
ncRNA region.png
267.42 kB
positional_distribution_utr3.tsv
127.77 kB
kmer_frequency_other_exon.tsv
2.97 kB
utr3 region.png
135.84 kB
kmer_frequency_genome.tsv
5.86 kB
positional_distribution_other_exon.tsv
127.32 kB
genome region.png
292.08 kB
kmer_frequency_utr3.tsv
3.24 kB
positional_distribution_genome.tsv
438.73 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1000 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
iCount RNA-maps
results.tar.gz
571.65 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
837.74 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.14 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
735.42 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.93 MB

SDMA_HCT116_Control DMSO 2_48h_cut above 50kDa_20181116_JU

iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.42 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.37 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.43 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
iCount RNA-maps
results.tar.gz
1.16 MB
STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
153.91 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.63 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.60 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
433.93 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
354.42 MB
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
559.23 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
545.18 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
344.98 MB
report.txt
727 B
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1017 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.45 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
Paraclu
peaks.bed.gz
17.18 kB
K-mers
other_exon region.png
253.43 kB
positional_distribution_intron.tsv
418.65 kB
intron region.png
251.88 kB
positional_distribution_utr3.tsv
292.87 kB
ncRNA region.png
266.12 kB
kmer_frequency_intron.tsv
5.80 kB
kmer_frequency_utr3.tsv
5.35 kB
kmer_frequency_genome.tsv
5.88 kB
positional_distribution_ncRNA.tsv
500.77 kB
genome region.png
273.95 kB
utr3 region.png
225.79 kB
positional_distribution_other_exon.tsv
397.77 kB
positional_distribution_genome.tsv
545.37 kB
kmer_frequency_other_exon.tsv
5.83 kB
kmer_frequency_ncRNA.tsv
5.83 kB

SDMA_HEK293_Non crosslinked control_cut above 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
788.55 kB
Paraclu
peaks.bed.gz
6.01 kB
FASTQ file (single-end)
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
333.07 MB
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
581.44 kB
Cutadapt (single-end)
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
321.85 MB
report.txt
732 B
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
557.41 kB
K-mers
positional_distribution_intron.tsv
255.25 kB
kmer_frequency_ncRNA.tsv
5.89 kB
ncRNA region.png
256.40 kB
intron region.png
240.03 kB
other_exon region.png
252.04 kB
kmer_frequency_genome.tsv
5.80 kB
kmer_frequency_utr3.tsv
4.54 kB
kmer_frequency_intron.tsv
5.73 kB
positional_distribution_other_exon.tsv
207.53 kB
positional_distribution_utr3.tsv
169.28 kB
positional_distribution_genome.tsv
502.16 kB
kmer_frequency_other_exon.tsv
5.34 kB
positional_distribution_ncRNA.tsv
427.15 kB
genome region.png
280.20 kB
utr3 region.png
140.78 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
439 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1015 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.06 MB
STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
157.91 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.65 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
212.73 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.42 GB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
872.45 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
739.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.97 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.94 MB

SDMA_HCT116_Control DMSO 1_48h_cut below 50kDa_20181116_JU

STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.90 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
139.04 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
616.96 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
56.65 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
229.79 MB
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
615.09 kB
Paraclu
peaks.bed.gz
4.12 kB
Cutadapt (single-end)
report.txt
727 B
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
216.36 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
564.78 kB
K-mers
kmer_frequency_ncRNA.tsv
5.63 kB
other_exon region.png
193.47 kB
intron region.png
208.25 kB
positional_distribution_utr3.tsv
83.61 kB
kmer_frequency_intron.tsv
5.26 kB
positional_distribution_intron.tsv
202.77 kB
genome region.png
243.50 kB
kmer_frequency_genome.tsv
5.89 kB
kmer_frequency_utr3.tsv
1.40 kB
positional_distribution_ncRNA.tsv
286.04 kB
positional_distribution_genome.tsv
415.13 kB
utr3 region.png
122.68 kB
kmer_frequency_other_exon.tsv
2.67 kB
positional_distribution_other_exon.tsv
112.90 kB
ncRNA region.png
259.83 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
216.29 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
794.33 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
952.27 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
246.67 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1001 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
674.17 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
iCount RNA-maps
results.tar.gz
429.02 kB

SDMA_HCT116_AZ 9458 100nM 1_48h_cut below 50kDa_20181116_JU

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
593.48 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
74.59 MB
stderr.txt
1.75 kB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
66.25 MB
fastqc
Directory
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
558.24 kB
K-mers
other_exon region.png
116.11 kB
kmer_frequency_intron.tsv
4.40 kB
positional_distribution_ncRNA.tsv
226.85 kB
positional_distribution_intron.tsv
145.74 kB
intron region.png
177.83 kB
ncRNA region.png
263.19 kB
kmer_frequency_other_exon.tsv
725 B
kmer_frequency_ncRNA.tsv
5.35 kB
kmer_frequency_genome.tsv
5.84 kB
kmer_frequency_utr3.tsv
772 B
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_other_exon.tsv
54.45 kB
positional_distribution_genome.tsv
309.50 kB
utr3 region.png
111.76 kB
genome region.png
217.08 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
423 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
331.05 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
980 B
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
173.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.21 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
24.12 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.01 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
43.09 MB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
83.37 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
93.48 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
294.29 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
467.93 kB
Paraclu
peaks.bed.gz
1.88 kB
iCount RNA-maps
results.tar.gz
357.31 kB

SDMA_HCT116_GSK3326595 500nM 2_48h_cut below 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
463.13 kB
FASTQ file (single-end)
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
130.88 MB
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
612.29 kB
Cutadapt (single-end)
report.txt
730 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
123.98 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
561.55 kB
K-mers
positional_distribution_intron.tsv
212.37 kB
intron region.png
183.04 kB
ncRNA region.png
268.52 kB
kmer_frequency_intron.tsv
5.40 kB
kmer_frequency_genome.tsv
5.87 kB
utr3 region.png
127.95 kB
positional_distribution_ncRNA.tsv
330.18 kB
kmer_frequency_utr3.tsv
2.47 kB
kmer_frequency_other_exon.tsv
2.87 kB
positional_distribution_other_exon.tsv
117.22 kB
positional_distribution_genome.tsv
425.32 kB
kmer_frequency_ncRNA.tsv
5.82 kB
positional_distribution_utr3.tsv
113.30 kB
other_exon region.png
160.44 kB
genome region.png
234.10 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
999 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
434 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
756.59 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
349.55 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
76.13 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.88 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
70.77 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.92 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
268.39 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
999.20 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
308.60 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1016.39 kB
Paraclu
peaks.bed.gz
3.80 kB

IgG_HEK293_IgG control_cut below 50kDa_20181116_JU

K-mers
ncRNA region.png
137.56 kB
kmer_frequency_genome.tsv
2.25 kB
kmer_frequency_utr3.tsv
447 B
positional_distribution_genome.tsv
95.48 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_other_exon.tsv
31.62 kB
kmer_frequency_other_exon.tsv
426 B
genome region.png
132.73 kB
kmer_frequency_ncRNA.tsv
794 B
utr3 region.png
114.50 kB
positional_distribution_ncRNA.tsv
62.82 kB
other_exon region.png
113.07 kB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
559.36 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
9.02 MB
stderr.txt
1.58 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
718 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
6.03 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
594.56 kB
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
412 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
894 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
36.43 kB
STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
13.84 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
5.54 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
1.63 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
4.52 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
18.88 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
iCount RNA-maps
results.tar.gz
280.04 kB
iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
7.46 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
114.32 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
23.80 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
8.14 kB
Paraclu
peaks.bed.gz
118 B

SDMA_HCT116_AZ 9458 100nM 2_48h_cut above 50kDa_20181116_JU

STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
89.08 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.49 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
886.08 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
381.65 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1014 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.14 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.29 MB
K-mers
other_exon region.png
255.90 kB
kmer_frequency_intron.tsv
5.80 kB
positional_distribution_ncRNA.tsv
497.49 kB
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_utr3.tsv
5.23 kB
positional_distribution_utr3.tsv
204.03 kB
positional_distribution_genome.tsv
531.57 kB
intron region.png
249.17 kB
positional_distribution_intron.tsv
295.31 kB
genome region.png
292.15 kB
kmer_frequency_other_exon.tsv
5.74 kB
kmer_frequency_genome.tsv
5.80 kB
positional_distribution_other_exon.tsv
278.86 kB
ncRNA region.png
267.00 kB
utr3 region.png
236.96 kB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
221.36 MB
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
556.78 kB
Paraclu
peaks.bed.gz
9.64 kB
iCount RNA-maps
results.tar.gz
1.07 MB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
212.34 MB
fastqc
Directory
report.txt
728 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
533.24 kB

SDMA_HCT116_GSK3326595 500nM 1_48h_cut below 50kDa_20181116_JU

K-mers
other_exon region.png
117.97 kB
kmer_frequency_intron.tsv
4.75 kB
positional_distribution_ncRNA.tsv
226.53 kB
kmer_frequency_utr3.tsv
802 B
kmer_frequency_ncRNA.tsv
5.51 kB
positional_distribution_intron.tsv
151.03 kB
intron region.png
188.06 kB
positional_distribution_genome.tsv
309.40 kB
kmer_frequency_other_exon.tsv
1.19 kB
utr3 region.png
114.57 kB
ncRNA region.png
259.84 kB
kmer_frequency_genome.tsv
5.87 kB
positional_distribution_other_exon.tsv
75.03 kB
positional_distribution_utr3.tsv
53.05 kB
genome region.png
247.60 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
293.32 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.93 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.45 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
28.18 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.36 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
87.38 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
589.53 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
98.58 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
308.45 kB
Paraclu
peaks.bed.gz
1.92 kB
FASTQ file (single-end)
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
132.37 MB
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
594.93 kB
iCount RNA-maps
results.tar.gz
362.73 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
348.18 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
116.98 MB
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
562.36 kB

SDMA_HCT116_Control DMSO 2_48h_cut below 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
421.33 kB
K-mers
kmer_frequency_intron.tsv
4.92 kB
positional_distribution_ncRNA.tsv
255.04 kB
intron region.png
193.93 kB
kmer_frequency_genome.tsv
5.88 kB
positional_distribution_intron.tsv
170.63 kB
positional_distribution_utr3.tsv
59.73 kB
kmer_frequency_ncRNA.tsv
5.50 kB
kmer_frequency_utr3.tsv
868 B
genome region.png
233.71 kB
ncRNA region.png
232.99 kB
utr3 region.png
125.98 kB
positional_distribution_genome.tsv
351.74 kB
positional_distribution_other_exon.tsv
85.02 kB
kmer_frequency_other_exon.tsv
1.51 kB
other_exon region.png
148.11 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
62.98 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
58.72 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.93 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.14 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
281.60 MB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
637.78 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
191.21 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
963.69 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.50 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
706.60 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
106.33 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
602.78 kB
Paraclu
peaks.bed.gz
2.53 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
96.72 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
557.33 kB

sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
297.96 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
612.44 kB
stderr.txt
1.73 kB

SDMA_HCT116_Control DMSO 1_48h_cut above 50kDa_20181116_JU

iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.31 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.56 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.84 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.15 MB
Cutadapt (single-end)
report.txt
727 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
156.67 MB
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
563.89 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.45 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
88.92 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
601.04 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
230.58 kB
K-mers
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_intron.tsv
5.89 kB
positional_distribution_ncRNA.tsv
425.46 kB
intron region.png
224.10 kB
positional_distribution_intron.tsv
270.81 kB
kmer_frequency_genome.tsv
5.80 kB
other_exon region.png
275.50 kB
ncRNA region.png
283.35 kB
positional_distribution_utr3.tsv
165.28 kB
kmer_frequency_utr3.tsv
4.34 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_genome.tsv
508.11 kB
genome region.png
320.22 kB
positional_distribution_other_exon.tsv
200.53 kB
utr3 region.png
150.08 kB
iCount RNA-maps
results.tar.gz
859.59 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
166.54 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
564.79 kB
stderr.txt
1.73 kB
Paraclu
peaks.bed.gz
7.30 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.24 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1008 B

SDMA_HCT116_AZ 9458 100nM 1_48h_cut above 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
570.11 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
840.84 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.94 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
738.39 kB
Paraclu
peaks.bed.gz
3.55 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
40.45 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
306.44 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
122.97 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1003 B
K-mers
other_exon region.png
154.69 kB
intron region.png
197.86 kB
positional_distribution_intron.tsv
173.62 kB
kmer_frequency_genome.tsv
5.86 kB
ncRNA region.png
265.28 kB
kmer_frequency_utr3.tsv
3.24 kB
kmer_frequency_intron.tsv
5.32 kB
utr3 region.png
135.87 kB
positional_distribution_utr3.tsv
127.77 kB
positional_distribution_genome.tsv
442.04 kB
positional_distribution_ncRNA.tsv
386.01 kB
kmer_frequency_other_exon.tsv
2.97 kB
positional_distribution_other_exon.tsv
127.32 kB
genome region.png
332.16 kB
kmer_frequency_ncRNA.tsv
5.88 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
83.92 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.65 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
78.70 MB
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
562.38 kB

SDMA_HCT116_Control DMSO 2_48h_cut above 50kDa_20181116_JU

iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.45 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.38 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.94 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
iCount RNA-maps
results.tar.gz
1.16 MB
K-mers
kmer_frequency_ncRNA.tsv
5.83 kB
intron region.png
250.00 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_intron.tsv
5.83 kB
other_exon region.png
253.88 kB
positional_distribution_ncRNA.tsv
502.02 kB
positional_distribution_intron.tsv
421.64 kB
kmer_frequency_utr3.tsv
5.35 kB
kmer_frequency_other_exon.tsv
5.83 kB
ncRNA region.png
287.11 kB
positional_distribution_utr3.tsv
292.87 kB
positional_distribution_genome.tsv
546.83 kB
positional_distribution_other_exon.tsv
400.63 kB
utr3 region.png
225.79 kB
genome region.png
284.85 kB
STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
457.90 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.80 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.67 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
169.59 MB
Paraclu
peaks.bed.gz
17.49 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
379.53 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
559.28 kB
stderr.txt
1.73 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1018 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.46 MB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
541.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
365.71 MB
report.txt
727 B

IgG_HEK293_IgG control_cut above 50kDa_20181116_JU

K-mers
other_exon region.png
169.68 kB
kmer_frequency_ncRNA.tsv
4.56 kB
positional_distribution_intron.tsv
49.68 kB
kmer_frequency_utr3.tsv
420 B
ncRNA region.png
235.89 kB
positional_distribution_genome.tsv
195.06 kB
positional_distribution_utr3.tsv
32.32 kB
intron region.png
116.31 kB
kmer_frequency_other_exon.tsv
1.24 kB
genome region.png
210.61 kB
positional_distribution_other_exon.tsv
70.58 kB
kmer_frequency_genome.tsv
5.55 kB
utr3 region.png
110.02 kB
kmer_frequency_intron.tsv
893 B
positional_distribution_ncRNA.tsv
161.51 kB
iCount RNA-maps
results.tar.gz
358.80 kB
iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
38.18 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
286.30 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
43.60 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
131.62 kB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.96 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
117.31 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
16.83 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.88 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
14.91 kB
FASTQ file (single-end)
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
30.56 MB
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
594.40 kB
stderr.txt
1.58 kB
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
206.55 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
977 B
Paraclu
peaks.bed.gz
559 B
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
28.76 MB
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
588.92 kB

sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
129.67 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
588.42 kB

igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
31.11 MB
fastqc
Directory
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
607.03 kB

IgG_HEK293_IgG control_cut below 50kDa_20181116_JU

STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.10 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
86.95 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
13.08 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.65 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
19.95 kB
Paraclu
peaks.bed.gz
252 B
iCount RNA-maps
results.tar.gz
281.28 kB
iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
13.85 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
330.49 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
14.95 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
43.66 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
31.11 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
607.03 kB
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
416 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
56.50 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
906 B
K-mers
kmer_frequency_ncRNA.tsv
794 B
kmer_frequency_intron.tsv
447 B
positional_distribution_ncRNA.tsv
62.82 kB
kmer_frequency_utr3.tsv
447 B
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_intron.tsv
31.53 kB
other_exon region.png
113.21 kB
positional_distribution_genome.tsv
125.92 kB
genome region.png
161.42 kB
ncRNA region.png
136.89 kB
intron region.png
114.92 kB
utr3 region.png
115.60 kB
kmer_frequency_other_exon.tsv
426 B
positional_distribution_other_exon.tsv
31.62 kB
kmer_frequency_genome.tsv
3.83 kB
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
23.84 MB
report.txt
718 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
595.21 kB

SDMA_HEK293_Non crosslinked control_cut below 50kDa_20181116_JU

K-mers
kmer_frequency_ncRNA.tsv
4.86 kB
kmer_frequency_intron.tsv
3.49 kB
intron region.png
131.36 kB
positional_distribution_ncRNA.tsv
201.36 kB
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_intron.tsv
113.81 kB
kmer_frequency_utr3.tsv
447 B
genome region.png
248.30 kB
positional_distribution_genome.tsv
260.26 kB
ncRNA region.png
202.09 kB
kmer_frequency_other_exon.tsv
1.12 kB
utr3 region.png
114.50 kB
positional_distribution_other_exon.tsv
76.37 kB
other_exon region.png
119.71 kB
Paraclu
peaks.bed.gz
1.10 kB
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.31 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
54.82 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
242.55 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
21.84 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
25.25 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
63.40 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
496.89 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
71.31 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
219.56 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
93.29 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
597.99 kB
stderr.txt
1.83 kB
iCount RNA-maps
results.tar.gz
353.78 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
290.24 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
982 B
Cutadapt (single-end)
fastqc
Directory
report.txt
732 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
84.95 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
552.06 kB

SDMA_HCT116_GSK3326595 500nM 2_48h_cut below 50kDa_20181116_JU

K-mers
kmer_frequency_intron.tsv
5.40 kB
positional_distribution_ncRNA.tsv
329.68 kB
kmer_frequency_ncRNA.tsv
5.82 kB
positional_distribution_intron.tsv
201.38 kB
intron region.png
180.58 kB
other_exon region.png
160.18 kB
kmer_frequency_genome.tsv
5.87 kB
ncRNA region.png
266.81 kB
kmer_frequency_utr3.tsv
2.47 kB
positional_distribution_utr3.tsv
113.30 kB
positional_distribution_genome.tsv
424.99 kB
genome region.png
232.67 kB
utr3 region.png
127.95 kB
kmer_frequency_other_exon.tsv
2.87 kB
positional_distribution_other_exon.tsv
117.22 kB
iCount RNA-maps
results.tar.gz
463.15 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.25 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
99.31 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
410.78 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
25.99 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
86.15 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
272.92 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1.01 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.23 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
313.64 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
623.32 kB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
163.95 MB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
770.78 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1001 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
Paraclu
peaks.bed.gz
3.85 kB
Cutadapt (single-end)
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
149.23 MB
fastqc
Directory
report.txt
731 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
566.07 kB

SDMA_HCT116_AZ 9458 100nM 2_48h_cut below 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
417.24 kB
K-mers
kmer_frequency_ncRNA.tsv
5.54 kB
kmer_frequency_intron.tsv
5.14 kB
other_exon region.png
197.89 kB
positional_distribution_ncRNA.tsv
261.96 kB
kmer_frequency_utr3.tsv
1.14 kB
positional_distribution_intron.tsv
178.59 kB
positional_distribution_genome.tsv
362.28 kB
ncRNA region.png
231.95 kB
intron region.png
194.73 kB
positional_distribution_utr3.tsv
77.49 kB
utr3 region.png
124.44 kB
kmer_frequency_other_exon.tsv
3.10 kB
positional_distribution_other_exon.tsv
117.90 kB
genome region.png
230.97 kB
kmer_frequency_genome.tsv
5.89 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
253.98 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
65.00 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
71.38 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.83 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
195.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
223.14 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.07 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
721.12 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
110.74 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
578.93 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
630.30 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
999 B
Paraclu
peaks.bed.gz
2.58 kB
Cutadapt (single-end)
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
96.05 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
532.55 kB

sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
166.54 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
564.79 kB

sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
83.92 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.65 kB

sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
98.91 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
573.76 kB

sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
379.53 MB
stderr.txt
1.73 kB
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
559.28 kB

sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
556.78 kB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
221.36 MB

sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
218.72 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
566.59 kB

SDMA_HCT116_AZ 9458 100nM 1_48h_cut below 50kDa_20181116_JU

K-mers
other_exon region.png
116.21 kB
kmer_frequency_intron.tsv
4.40 kB
positional_distribution_ncRNA.tsv
226.85 kB
kmer_frequency_ncRNA.tsv
5.35 kB
intron region.png
177.83 kB
utr3 region.png
111.76 kB
kmer_frequency_utr3.tsv
772 B
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_genome.tsv
309.19 kB
kmer_frequency_genome.tsv
5.84 kB
positional_distribution_intron.tsv
145.74 kB
kmer_frequency_other_exon.tsv
725 B
positional_distribution_other_exon.tsv
54.45 kB
genome region.png
216.78 kB
ncRNA region.png
263.19 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
333.30 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.22 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
608.16 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
95.47 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
300.38 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.49 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
88.25 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
31.06 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
265.25 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.76 kB
iCount RNA-maps
results.tar.gz
356.94 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
129.67 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
588.42 kB
Paraclu
peaks.bed.gz
1.87 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
112.67 MB
report.txt
728 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
559.51 kB

sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
582.33 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
374.63 MB

sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
132.37 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
594.93 kB

sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
106.33 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
602.78 kB

sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
110.74 MB
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
578.93 kB

sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
stderr.txt
1.81 kB
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
163.95 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
623.32 kB

sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
93.29 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
597.99 kB

SDMA_HCT116_Control DMSO 1_48h_cut below 50kDa_20181116_JU

STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
192.61 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
746.55 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
67.85 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1005 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
683.95 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
219.54 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.15 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
250.24 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
805.87 kB
K-mers
other_exon region.png
193.48 kB
kmer_frequency_ncRNA.tsv
5.63 kB
kmer_frequency_intron.tsv
5.33 kB
positional_distribution_ncRNA.tsv
286.04 kB
kmer_frequency_utr3.tsv
1.40 kB
positional_distribution_utr3.tsv
83.61 kB
utr3 region.png
122.68 kB
positional_distribution_genome.tsv
419.38 kB
kmer_frequency_other_exon.tsv
2.67 kB
genome region.png
253.52 kB
positional_distribution_intron.tsv
201.13 kB
intron region.png
202.23 kB
ncRNA region.png
263.66 kB
positional_distribution_other_exon.tsv
112.90 kB
kmer_frequency_genome.tsv
5.88 kB
iCount RNA-maps
results.tar.gz
430.48 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
297.96 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
612.44 kB
Paraclu
peaks.bed.gz
4.15 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
728 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
273.24 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
568.08 kB

SDMA_HEK293_Non crosslinked control_cut above 50kDa_20181116_JU

STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.54 GB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.08 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
226.00 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
185.73 MB
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
K-mers
positional_distribution_intron.tsv
263.64 kB
other_exon region.png
252.04 kB
kmer_frequency_intron.tsv
5.80 kB
positional_distribution_utr3.tsv
173.30 kB
positional_distribution_ncRNA.tsv
428.10 kB
ncRNA region.png
256.32 kB
kmer_frequency_other_exon.tsv
5.34 kB
utr3 region.png
148.23 kB
genome region.png
282.52 kB
intron region.png
262.96 kB
kmer_frequency_utr3.tsv
4.63 kB
positional_distribution_other_exon.tsv
207.53 kB
kmer_frequency_ncRNA.tsv
5.88 kB
positional_distribution_genome.tsv
505.72 kB
kmer_frequency_genome.tsv
5.79 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.00 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
747.46 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
880.64 kB
Paraclu
peaks.bed.gz
6.41 kB
iCount RNA-maps
results.tar.gz
788.06 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
374.63 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
582.33 kB
Cutadapt (single-end)
report.txt
732 B
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
358.82 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
566.65 kB

SDMA_HCT116_GSK3326595 500nM 1_48h_cut below 50kDa_20181116_JU

Paraclu
peaks.bed.gz
1.89 kB
iCount RNA-maps
results.tar.gz
358.17 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
457.71 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
96.63 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
302.24 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.59 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
345.12 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
K-mers
positional_distribution_intron.tsv
151.03 kB
ncRNA region.png
259.94 kB
intron region.png
188.06 kB
kmer_frequency_intron.tsv
4.75 kB
kmer_frequency_genome.tsv
5.87 kB
positional_distribution_ncRNA.tsv
226.53 kB
kmer_frequency_ncRNA.tsv
5.51 kB
positional_distribution_utr3.tsv
53.05 kB
kmer_frequency_utr3.tsv
802 B
other_exon region.png
117.84 kB
utr3 region.png
114.57 kB
genome region.png
241.27 kB
positional_distribution_genome.tsv
305.31 kB
positional_distribution_other_exon.tsv
75.03 kB
kmer_frequency_other_exon.tsv
1.19 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
616.03 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
79.28 MB
Cutadapt (single-end)
report.txt
731 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
559.86 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
72.57 MB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.19 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
45.46 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
200.02 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
21.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
21.25 kB

SDMA_HCT116_GSK3326595 500nM 2_48h_cut above 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
949.95 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
91.45 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
986.37 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
266.54 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.44 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.28 MB
K-mers
kmer_frequency_ncRNA.tsv
5.87 kB
other_exon region.png
257.49 kB
kmer_frequency_utr3.tsv
4.41 kB
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_genome.tsv
523.92 kB
positional_distribution_intron.tsv
283.29 kB
kmer_frequency_other_exon.tsv
5.55 kB
positional_distribution_ncRNA.tsv
477.74 kB
utr3 region.png
184.72 kB
ncRNA region.png
271.49 kB
intron region.png
210.64 kB
positional_distribution_other_exon.tsv
231.33 kB
positional_distribution_utr3.tsv
170.15 kB
kmer_frequency_genome.tsv
5.78 kB
genome region.png
230.51 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.44 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.14 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.84 MB
Paraclu
peaks.bed.gz
8.30 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
218.72 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
566.59 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
209.37 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
547.47 kB
report.txt
731 B

SDMA_HCT116_GSK3326595 500nM 1_48h_cut above 50kDa_20181116_JU

Paraclu
peaks.bed.gz
4.09 kB
iCount RNA-maps
results.tar.gz
613.44 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
998 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
432 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.14 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.78 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
871.99 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.49 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
990.14 kB
K-mers
other_exon region.png
165.27 kB
kmer_frequency_intron.tsv
5.50 kB
intron region.png
227.52 kB
positional_distribution_ncRNA.tsv
377.17 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_utr3.tsv
137.51 kB
positional_distribution_other_exon.tsv
126.53 kB
kmer_frequency_utr3.tsv
3.77 kB
positional_distribution_intron.tsv
191.89 kB
positional_distribution_genome.tsv
446.88 kB
genome region.png
305.66 kB
ncRNA region.png
308.91 kB
kmer_frequency_other_exon.tsv
3.27 kB
utr3 region.png
147.16 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
50.05 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.18 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
158.20 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
337.72 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
573.76 kB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
98.91 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
92.28 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
538.84 kB

SDMA_HCT116_AZ 9458 100nM 1_48h_cut below 50kDa_20181116_JU

Paraclu
peaks.bed.gz
1.88 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
93.48 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
83.37 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
467.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
294.29 kB
iCount RNA-maps
results.tar.gz
357.30 kB
K-mers
kmer_frequency_ncRNA.tsv
5.35 kB
kmer_frequency_intron.tsv
4.40 kB
positional_distribution_intron.tsv
145.74 kB
positional_distribution_ncRNA.tsv
226.85 kB
ncRNA region.png
262.97 kB
intron region.png
177.83 kB
other_exon region.png
116.11 kB
kmer_frequency_utr3.tsv
772 B
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_genome.tsv
309.50 kB
kmer_frequency_genome.tsv
5.84 kB
utr3 region.png
110.54 kB
kmer_frequency_other_exon.tsv
725 B
genome region.png
217.08 kB
positional_distribution_other_exon.tsv
54.45 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
423 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
980 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
331.05 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
74.59 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
593.48 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
558.24 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
66.25 MB
report.txt
728 B
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
173.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
43.09 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.21 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
24.12 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.01 kB

SDMA_HCT116_GSK3326595 500nM 2_48h_cut below 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
463.10 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
308.60 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
268.39 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
999.21 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1016.39 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
434 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
999 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
756.59 kB
K-mers
positional_distribution_intron.tsv
212.37 kB
ncRNA region.png
268.52 kB
intron region.png
183.15 kB
kmer_frequency_intron.tsv
5.40 kB
kmer_frequency_genome.tsv
5.87 kB
positional_distribution_ncRNA.tsv
330.18 kB
other_exon region.png
160.18 kB
kmer_frequency_utr3.tsv
2.47 kB
kmer_frequency_ncRNA.tsv
5.82 kB
utr3 region.png
127.47 kB
kmer_frequency_other_exon.tsv
2.87 kB
positional_distribution_genome.tsv
425.32 kB
positional_distribution_other_exon.tsv
117.22 kB
positional_distribution_utr3.tsv
113.30 kB
genome region.png
234.10 kB
FASTQ file (single-end)
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
130.88 MB
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
612.29 kB
Paraclu
peaks.bed.gz
3.80 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
123.98 MB
report.txt
730 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
561.55 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
76.13 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
349.55 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.88 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
70.77 kB

SDMA_HCT116_Control DMSO 1_48h_cut above 50kDa_20181116_JU

STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
74.68 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.25 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
559.27 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
214.80 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.19 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.14 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.82 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.30 MB
Paraclu
peaks.bed.gz
7.25 kB
iCount RNA-maps
results.tar.gz
861.66 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
147.18 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
570.13 kB
stderr.txt
1.73 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
726 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
551.95 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
141.36 MB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1009 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.24 MB
K-mers
kmer_frequency_ncRNA.tsv
5.88 kB
other_exon region.png
275.50 kB
positional_distribution_intron.tsv
269.14 kB
intron region.png
224.63 kB
kmer_frequency_intron.tsv
5.84 kB
kmer_frequency_utr3.tsv
4.34 kB
ncRNA region.png
280.28 kB
kmer_frequency_genome.tsv
5.80 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_genome.tsv
506.61 kB
positional_distribution_ncRNA.tsv
426.51 kB
positional_distribution_other_exon.tsv
200.53 kB
utr3 region.png
150.08 kB
positional_distribution_utr3.tsv
165.28 kB
genome region.png
318.90 kB

IgG_HEK293_IgG control_cut above 50kDa_20181116_JU

K-mers
intron region.png
116.31 kB
kmer_frequency_intron.tsv
893 B
other_exon region.png
169.68 kB
positional_distribution_ncRNA.tsv
161.51 kB
kmer_frequency_ncRNA.tsv
4.56 kB
kmer_frequency_genome.tsv
5.55 kB
positional_distribution_intron.tsv
49.68 kB
kmer_frequency_utr3.tsv
420 B
ncRNA region.png
235.75 kB
positional_distribution_genome.tsv
195.06 kB
positional_distribution_utr3.tsv
32.32 kB
kmer_frequency_other_exon.tsv
1.24 kB
utr3 region.png
109.18 kB
positional_distribution_other_exon.tsv
70.58 kB
genome region.png
210.61 kB
Paraclu
peaks.bed.gz
559 B
iCount RNA-maps
results.tar.gz
358.80 kB
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
206.55 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
977 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
30.06 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
598.29 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
28.37 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
589.91 kB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
16.47 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.96 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
115.26 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.88 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
14.91 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
131.62 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
286.33 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
43.60 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
38.18 kB

SDMA_HCT116_Control DMSO 2_48h_cut above 50kDa_20181116_JU

STAR
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.63 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
153.91 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
1.60 GB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
433.93 kB
iCount RNA-maps
results.tar.gz
1.16 MB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.37 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
10.42 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.73 MB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.36 kB
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.43 MB
K-mers
positional_distribution_intron.tsv
418.65 kB
other_exon region.png
253.25 kB
ncRNA region.png
266.12 kB
kmer_frequency_ncRNA.tsv
5.83 kB
kmer_frequency_intron.tsv
5.80 kB
intron region.png
251.88 kB
positional_distribution_ncRNA.tsv
500.77 kB
utr3 region.png
227.19 kB
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_utr3.tsv
5.35 kB
kmer_frequency_other_exon.tsv
5.83 kB
positional_distribution_genome.tsv
545.37 kB
positional_distribution_other_exon.tsv
397.77 kB
positional_distribution_utr3.tsv
292.87 kB
genome region.png
276.57 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju.fastq.gz
354.42 MB
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
559.23 kB
stderr.txt
1.73 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1017 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.45 MB
Paraclu
peaks.bed.gz
17.18 kB
Cutadapt (single-end)
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
344.98 MB
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
545.18 kB

SDMA_HCT116_GSK3326595 500nM 2_48h_cut above 50kDa_20181116_JU

STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
933.40 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
80.49 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.21 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
248.83 kB
iCount RNA-maps
results.tar.gz
948.57 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.43 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.46 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.11 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1010 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.27 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
199.25 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
575.66 kB
Paraclu
peaks.bed.gz
7.72 kB
K-mers
kmer_frequency_ncRNA.tsv
5.86 kB
other_exon region.png
309.36 kB
kmer_frequency_intron.tsv
5.80 kB
positional_distribution_intron.tsv
277.32 kB
positional_distribution_ncRNA.tsv
474.59 kB
intron region.png
219.87 kB
kmer_frequency_utr3.tsv
4.41 kB
kmer_frequency_other_exon.tsv
5.53 kB
ncRNA region.png
270.74 kB
positional_distribution_utr3.tsv
170.15 kB
kmer_frequency_genome.tsv
5.80 kB
positional_distribution_other_exon.tsv
240.59 kB
positional_distribution_genome.tsv
517.70 kB
utr3 region.png
184.72 kB
genome region.png
276.90 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
553.42 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
194.15 MB
report.txt
730 B

SDMA_HCT116_AZ 9458 100nM 1_48h_cut above 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
571.67 kB
Paraclu
peaks.bed.gz
3.51 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.14 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
735.42 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.93 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
837.74 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
72.56 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.43 kB
stderr.txt
1.75 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1000 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
K-mers
kmer_frequency_intron.tsv
5.33 kB
positional_distribution_ncRNA.tsv
373.69 kB
positional_distribution_intron.tsv
172.24 kB
ncRNA region.png
266.79 kB
kmer_frequency_utr3.tsv
3.24 kB
other_exon region.png
154.69 kB
positional_distribution_genome.tsv
438.73 kB
kmer_frequency_ncRNA.tsv
5.88 kB
utr3 region.png
135.87 kB
intron region.png
194.57 kB
positional_distribution_utr3.tsv
127.77 kB
kmer_frequency_other_exon.tsv
2.97 kB
positional_distribution_other_exon.tsv
127.32 kB
kmer_frequency_genome.tsv
5.86 kB
genome region.png
292.08 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
70.06 MB
report.txt
727 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
550.45 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
32.47 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
283.75 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.83 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
112.94 kB

SDMA_HCT116_GSK3326595 500nM 1_48h_cut below 50kDa_20181116_JU

K-mers
positional_distribution_ncRNA.tsv
226.53 kB
intron region.png
188.37 kB
positional_distribution_intron.tsv
151.03 kB
kmer_frequency_genome.tsv
5.87 kB
kmer_frequency_intron.tsv
4.75 kB
kmer_frequency_other_exon.tsv
1.19 kB
other_exon region.png
117.84 kB
ncRNA region.png
259.94 kB
positional_distribution_utr3.tsv
53.05 kB
kmer_frequency_utr3.tsv
802 B
kmer_frequency_ncRNA.tsv
5.51 kB
genome region.png
247.39 kB
utr3 region.png
114.57 kB
positional_distribution_genome.tsv
309.40 kB
positional_distribution_other_exon.tsv
75.03 kB
Paraclu
peaks.bed.gz
1.92 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
128.98 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
599.59 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
349.61 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
results.tar.gz
360.64 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
114.68 MB
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
551.17 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
85.65 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.45 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
287.56 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.36 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
28.18 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
87.37 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
589.53 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
308.43 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
98.58 kB

IgG_HEK293_IgG control_cut above 50kDa_20181116_JU

iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
36.23 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
125.25 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
41.50 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
167.69 kB
iCount RNA-maps
results.tar.gz
349.21 kB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
25.42 MB
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
592.32 kB
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
964 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
204.66 kB
Paraclu
peaks.bed.gz
507 B
K-mers
other_exon region.png
132.40 kB
positional_distribution_utr3.tsv
32.32 kB
genome region.png
226.01 kB
kmer_frequency_ncRNA.tsv
4.56 kB
kmer_frequency_intron.tsv
893 B
positional_distribution_intron.tsv
49.68 kB
kmer_frequency_utr3.tsv
420 B
intron region.png
116.19 kB
ncRNA region.png
235.75 kB
positional_distribution_ncRNA.tsv
161.51 kB
positional_distribution_genome.tsv
188.54 kB
positional_distribution_other_exon.tsv
68.40 kB
utr3 region.png
110.02 kB
kmer_frequency_genome.tsv
5.43 kB
kmer_frequency_other_exon.tsv
1.08 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
24.01 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
567.75 kB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.70 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
9.91 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
13.07 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
102.38 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.04 kB

SDMA_HEK293_Non crosslinked control_cut below 50kDa_20181116_JU

iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
340.42 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
60.10 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
67.71 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
208.30 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
987 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
282.65 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
K-mers
kmer_frequency_intron.tsv
3.49 kB
positional_distribution_ncRNA.tsv
201.36 kB
other_exon region.png
113.04 kB
intron region.png
131.36 kB
positional_distribution_intron.tsv
113.81 kB
kmer_frequency_utr3.tsv
447 B
ncRNA region.png
202.09 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_genome.tsv
254.63 kB
kmer_frequency_genome.tsv
5.73 kB
kmer_frequency_other_exon.tsv
1.12 kB
positional_distribution_other_exon.tsv
76.37 kB
genome region.png
216.37 kB
utr3 region.png
115.60 kB
kmer_frequency_ncRNA.tsv
4.86 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
70.00 MB
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
594.78 kB
iCount RNA-maps
results.tar.gz
352.02 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
65.56 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
570.24 kB
report.txt
732 B
Paraclu
peaks.bed.gz
1.04 kB
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
186.17 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
39.55 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
1.99 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.99 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
20.97 kB

IgG_HEK293_IgG control_cut below 50kDa_20181116_JU

iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
7.46 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
114.32 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
23.80 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
8.14 kB
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
412 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
894 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
36.43 kB
K-mers
kmer_frequency_genome.tsv
2.25 kB
kmer_frequency_utr3.tsv
447 B
ncRNA region.png
137.56 kB
positional_distribution_utr3.tsv
33.08 kB
positional_distribution_genome.tsv
95.48 kB
utr3 region.png
115.60 kB
genome region.png
132.51 kB
other_exon region.png
113.21 kB
kmer_frequency_other_exon.tsv
426 B
kmer_frequency_ncRNA.tsv
794 B
positional_distribution_other_exon.tsv
31.62 kB
positional_distribution_ncRNA.tsv
62.82 kB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
559.36 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
9.02 MB
stderr.txt
1.58 kB
iCount RNA-maps
results.tar.gz
280.04 kB
Paraclu
peaks.bed.gz
118 B
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
6.03 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
594.56 kB
report.txt
718 B
STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
4.52 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
1.63 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
13.84 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
5.54 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
18.88 kB

SDMA_HCT116_Control DMSO 1_48h_cut below 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
430.49 kB
Paraclu
peaks.bed.gz
4.15 kB
K-mers
other_exon region.png
193.47 kB
kmer_frequency_ncRNA.tsv
5.63 kB
kmer_frequency_intron.tsv
5.33 kB
positional_distribution_ncRNA.tsv
286.04 kB
positional_distribution_utr3.tsv
83.61 kB
positional_distribution_intron.tsv
201.13 kB
intron region.png
202.23 kB
kmer_frequency_utr3.tsv
1.40 kB
genome region.png
253.52 kB
kmer_frequency_other_exon.tsv
2.67 kB
utr3 region.png
122.68 kB
kmer_frequency_genome.tsv
5.88 kB
positional_distribution_genome.tsv
419.38 kB
ncRNA region.png
258.97 kB
positional_distribution_other_exon.tsv
112.90 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1005 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
683.95 kB
FASTQ file (single-end)
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
293.14 MB
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
609.60 kB
stderr.txt
1.73 kB
Cutadapt (single-end)
report.txt
728 B
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
270.85 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
568.75 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
190.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
67.85 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
736.13 MB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
219.54 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
250.24 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
805.87 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.15 MB

SDMA_HCT116_AZ 9458 100nM 2_48h_cut below 50kDa_20181116_JU

iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
632.57 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
998 B
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
108.29 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
573.09 kB
Paraclu
peaks.bed.gz
2.58 kB
K-mers
positional_distribution_intron.tsv
178.59 kB
other_exon region.png
197.89 kB
ncRNA region.png
231.95 kB
intron region.png
194.73 kB
kmer_frequency_ncRNA.tsv
5.54 kB
kmer_frequency_intron.tsv
5.14 kB
kmer_frequency_genome.tsv
5.89 kB
kmer_frequency_utr3.tsv
1.14 kB
positional_distribution_utr3.tsv
77.49 kB
positional_distribution_ncRNA.tsv
261.96 kB
utr3 region.png
124.44 kB
kmer_frequency_other_exon.tsv
3.10 kB
genome region.png
230.97 kB
positional_distribution_genome.tsv
362.28 kB
positional_distribution_other_exon.tsv
117.90 kB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
94.38 MB
fastqc
Directory
report.txt
728 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
530.99 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
63.32 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
71.38 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
249.56 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.83 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
195.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
223.14 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.07 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
721.12 kB
iCount RNA-maps
results.tar.gz
417.26 kB

IgG_HEK293_IgG control_cut above 50kDa_20181116_JU

K-mers
utr3 region.png
110.02 kB
kmer_frequency_intron.tsv
893 B
kmer_frequency_ncRNA.tsv
4.56 kB
positional_distribution_utr3.tsv
32.32 kB
positional_distribution_ncRNA.tsv
161.51 kB
genome region.png
220.13 kB
other_exon region.png
132.40 kB
positional_distribution_intron.tsv
49.68 kB
ncRNA region.png
235.89 kB
kmer_frequency_other_exon.tsv
1.08 kB
kmer_frequency_utr3.tsv
420 B
intron region.png
116.19 kB
positional_distribution_other_exon.tsv
68.40 kB
positional_distribution_genome.tsv
188.54 kB
kmer_frequency_genome.tsv
5.43 kB
STAR
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam
102.38 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
13.07 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
1.70 MB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.bw
20.04 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
9.91 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju.fastq.gz
25.42 MB
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_fastqc.zip
592.32 kB
Cutadapt (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
24.01 MB
report.txt
718 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
567.75 kB
iCount summary
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
964 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
204.66 kB
iCount RNA-maps
results.tar.gz
349.21 kB
iCount xlsites
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
167.68 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
36.23 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
125.25 kB
igg-hek293-igg-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
41.50 kB
Paraclu
peaks.bed.gz
507 B

SDMA_HEK293_Non crosslinked control_cut below 50kDa_20181116_JU

iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
982 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
290.24 kB
FASTQ file (single-end)
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
91.42 MB
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
598.06 kB
Paraclu
peaks.bed.gz
1.10 kB
iCount RNA-maps
results.tar.gz
353.80 kB
K-mers
positional_distribution_intron.tsv
113.81 kB
ncRNA region.png
201.49 kB
other_exon region.png
119.74 kB
positional_distribution_utr3.tsv
33.08 kB
intron region.png
130.92 kB
kmer_frequency_utr3.tsv
447 B
genome region.png
248.23 kB
kmer_frequency_intron.tsv
3.49 kB
positional_distribution_genome.tsv
260.26 kB
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_ncRNA.tsv
201.36 kB
utr3 region.png
115.60 kB
positional_distribution_other_exon.tsv
76.37 kB
kmer_frequency_other_exon.tsv
1.12 kB
kmer_frequency_ncRNA.tsv
4.86 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
732 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
553.25 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
83.59 MB
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
53.51 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
238.64 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.31 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
21.84 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
25.25 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
63.40 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
71.31 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
496.91 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
219.56 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB

SDMA_HCT116_Control DMSO 1_48h_cut above 50kDa_20181116_JU

STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.46 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.45 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
592.07 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
230.58 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.84 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.56 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.31 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.15 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1007 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.25 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
163.98 MB
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
566.86 kB
iCount RNA-maps
results.tar.gz
859.92 kB
Paraclu
peaks.bed.gz
7.30 kB
K-mers
positional_distribution_other_exon.tsv
200.53 kB
kmer_frequency_intron.tsv
5.89 kB
intron region.png
224.37 kB
kmer_frequency_utr3.tsv
4.34 kB
positional_distribution_utr3.tsv
165.28 kB
utr3 region.png
149.69 kB
positional_distribution_intron.tsv
270.81 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_genome.tsv
508.11 kB
positional_distribution_ncRNA.tsv
425.46 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_genome.tsv
5.80 kB
other_exon region.png
274.84 kB
ncRNA region.png
302.20 kB
genome region.png
320.22 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
564.30 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
154.94 MB

SDMA_HCT116_GSK3326595 500nM 1_48h_cut above 50kDa_20181116_JU

Paraclu
peaks.bed.gz
4.09 kB
iCount RNA-maps
results.tar.gz
613.42 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.14 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1000 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
582.45 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
97.27 MB
K-mers
positional_distribution_intron.tsv
191.89 kB
ncRNA region.png
308.91 kB
kmer_frequency_intron.tsv
5.50 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_ncRNA.tsv
377.17 kB
kmer_frequency_utr3.tsv
3.77 kB
intron region.png
217.64 kB
other_exon region.png
167.88 kB
positional_distribution_utr3.tsv
137.51 kB
utr3 region.png
147.60 kB
positional_distribution_genome.tsv
446.88 kB
kmer_frequency_genome.tsv
5.86 kB
positional_distribution_other_exon.tsv
126.53 kB
genome region.png
305.66 kB
kmer_frequency_other_exon.tsv
3.27 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
91.28 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
544.27 kB
report.txt
731 B
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.18 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
49.31 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
158.20 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
332.71 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
872.00 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.78 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.49 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
990.14 kB

SDMA_HCT116_Control DMSO 1_48h_cut below 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
430.47 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju.fastq.gz
293.14 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
609.60 kB
stderr.txt
1.73 kB
Paraclu
peaks.bed.gz
4.15 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
270.85 MB
report.txt
728 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
568.75 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
190.23 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
736.12 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
67.85 kB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.15 MB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
219.54 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
250.24 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
805.87 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
683.95 kB
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-control-dmso-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1005 B
K-mers
other_exon region.png
193.47 kB
kmer_frequency_intron.tsv
5.33 kB
positional_distribution_ncRNA.tsv
286.04 kB
kmer_frequency_ncRNA.tsv
5.63 kB
kmer_frequency_utr3.tsv
1.40 kB
positional_distribution_intron.tsv
201.13 kB
positional_distribution_utr3.tsv
83.61 kB
utr3 region.png
122.68 kB
positional_distribution_genome.tsv
419.38 kB
ncRNA region.png
259.83 kB
kmer_frequency_other_exon.tsv
2.67 kB
genome region.png
253.63 kB
positional_distribution_other_exon.tsv
112.90 kB
intron region.png
202.12 kB
kmer_frequency_genome.tsv
5.88 kB

SDMA_HCT116_AZ 9458 100nM 2_48h_cut above 50kDa_20181116_JU

K-mers
kmer_frequency_intron.tsv
5.80 kB
kmer_frequency_ncRNA.tsv
5.87 kB
other_exon region.png
260.52 kB
positional_distribution_intron.tsv
295.31 kB
positional_distribution_ncRNA.tsv
497.49 kB
ncRNA region.png
267.00 kB
intron region.png
249.17 kB
kmer_frequency_utr3.tsv
5.23 kB
positional_distribution_genome.tsv
531.57 kB
positional_distribution_utr3.tsv
204.03 kB
kmer_frequency_genome.tsv
5.80 kB
utr3 region.png
237.07 kB
kmer_frequency_other_exon.tsv
5.74 kB
genome region.png
292.15 kB
positional_distribution_other_exon.tsv
278.86 kB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
218.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
558.17 kB
fastqc
Directory
stderr.txt
1.75 kB
Paraclu
peaks.bed.gz
9.64 kB
iCount RNA-maps
results.tar.gz
1.08 MB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
209.93 MB
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
534.69 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
87.53 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.48 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
381.65 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
873.37 MB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.14 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
5.18 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.29 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1014 B

SDMA_HCT116_AZ 9458 100nM 1_48h_cut above 50kDa_20181116_JU

STAR
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.03 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
301.68 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
122.94 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
39.81 MB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
82.59 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
576.85 kB
Paraclu
peaks.bed.gz
3.55 kB
iCount RNA-maps
results.tar.gz
570.10 kB
Cutadapt (single-end)
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
77.82 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
563.22 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
738.40 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
2.94 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
840.84 kB
iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
433 B
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB
sdma-hct116-az-9458-100nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1003 B
K-mers
kmer_frequency_other_exon.tsv
2.97 kB
kmer_frequency_intron.tsv
5.32 kB
other_exon region.png
154.69 kB
intron region.png
197.98 kB
positional_distribution_ncRNA.tsv
386.01 kB
positional_distribution_utr3.tsv
127.77 kB
positional_distribution_intron.tsv
173.62 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_genome.tsv
5.86 kB
utr3 region.png
135.87 kB
positional_distribution_other_exon.tsv
127.32 kB
ncRNA region.png
265.90 kB
kmer_frequency_utr3.tsv
3.24 kB
genome region.png
328.58 kB
positional_distribution_genome.tsv
442.04 kB

SDMA_HCT116_AZ 9458 100nM 2_48h_cut below 50kDa_20181116_JU

K-mers
other_exon region.png
197.89 kB
kmer_frequency_intron.tsv
5.14 kB
positional_distribution_ncRNA.tsv
261.96 kB
positional_distribution_intron.tsv
178.59 kB
ncRNA region.png
231.95 kB
kmer_frequency_ncRNA.tsv
5.54 kB
intron region.png
194.73 kB
kmer_frequency_utr3.tsv
1.14 kB
kmer_frequency_genome.tsv
5.89 kB
utr3 region.png
123.84 kB
positional_distribution_genome.tsv
362.28 kB
positional_distribution_utr3.tsv
77.49 kB
kmer_frequency_other_exon.tsv
3.10 kB
positional_distribution_other_exon.tsv
117.90 kB
genome region.png
230.97 kB
Paraclu
peaks.bed.gz
2.58 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
573.09 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
108.29 MB
iCount RNA-maps
results.tar.gz
417.26 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
94.38 MB
report.txt
728 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
530.99 kB
STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
249.56 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
63.32 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
71.38 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
24.83 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.07 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
195.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
223.14 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
721.12 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
998 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
632.57 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
431 B

SDMA_HCT116_GSK3326595 500nM 2_48h_cut above 50kDa_20181116_JU

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
213.04 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
571.06 kB
Paraclu
peaks.bed.gz
8.30 kB
Cutadapt (single-end)
report.txt
731 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
205.23 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
556.22 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
88.98 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.43 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
266.51 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
969.46 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.84 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.44 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.14 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
iCount RNA-maps
results.tar.gz
949.81 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.28 MB
K-mers
other_exon region.png
257.49 kB
positional_distribution_intron.tsv
283.29 kB
kmer_frequency_ncRNA.tsv
5.87 kB
ncRNA region.png
271.96 kB
utr3 region.png
184.72 kB
kmer_frequency_utr3.tsv
4.41 kB
kmer_frequency_other_exon.tsv
5.55 kB
positional_distribution_utr3.tsv
170.15 kB
positional_distribution_genome.tsv
523.92 kB
intron region.png
210.64 kB
positional_distribution_other_exon.tsv
231.33 kB
kmer_frequency_intron.tsv
5.83 kB
kmer_frequency_genome.tsv
5.78 kB
genome region.png
230.51 kB
positional_distribution_ncRNA.tsv
477.74 kB

SDMA_HCT116_GSK3326595 500nM 2_48h_cut below 50kDa_20181116_JU

FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
161.47 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
624.13 kB
iCount RNA-maps
results.tar.gz
463.15 kB
Paraclu
peaks.bed.gz
3.85 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
731 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
569.43 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
147.92 MB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
98.13 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.25 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
86.15 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
405.67 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.23 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1.01 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
313.64 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
272.92 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
996 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
768.29 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
435 B
K-mers
other_exon region.png
160.44 kB
kmer_frequency_ncRNA.tsv
5.82 kB
kmer_frequency_intron.tsv
5.40 kB
intron region.png
180.58 kB
positional_distribution_ncRNA.tsv
329.68 kB
positional_distribution_intron.tsv
201.38 kB
kmer_frequency_genome.tsv
5.87 kB
kmer_frequency_utr3.tsv
2.47 kB
positional_distribution_utr3.tsv
113.30 kB
ncRNA region.png
266.26 kB
kmer_frequency_other_exon.tsv
2.87 kB
positional_distribution_other_exon.tsv
117.22 kB
positional_distribution_genome.tsv
424.99 kB
utr3 region.png
127.95 kB
genome region.png
232.67 kB

SDMA_HEK293_Non crosslinked control_cut below 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
353.80 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
91.42 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
598.06 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
982 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
290.24 kB
Paraclu
peaks.bed.gz
1.10 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
83.59 MB
report.txt
732 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
553.25 kB
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
238.64 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
25.25 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
53.51 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.31 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
21.84 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
496.91 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
63.40 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
71.31 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
219.56 kB
K-mers
other_exon region.png
119.74 kB
kmer_frequency_ncRNA.tsv
4.86 kB
kmer_frequency_intron.tsv
3.49 kB
positional_distribution_ncRNA.tsv
201.36 kB
positional_distribution_intron.tsv
113.81 kB
intron region.png
131.57 kB
ncRNA region.png
201.49 kB
positional_distribution_utr3.tsv
33.08 kB
kmer_frequency_utr3.tsv
447 B
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_other_exon.tsv
76.37 kB
genome region.png
248.23 kB
positional_distribution_genome.tsv
260.26 kB
kmer_frequency_other_exon.tsv
1.12 kB
utr3 region.png
114.50 kB

IgG_HEK293_IgG control_cut below 50kDa_20181116_JU

Paraclu
peaks.bed.gz
252 B
iCount summary
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
416 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
906 B
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
56.50 kB
FASTQ file (single-end)
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_fastqc.zip
607.74 kB
stderr.txt
1.58 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju.fastq.gz
29.68 MB
K-mers
kmer_frequency_intron.tsv
447 B
positional_distribution_ncRNA.tsv
62.82 kB
kmer_frequency_ncRNA.tsv
794 B
positional_distribution_intron.tsv
31.53 kB
ncRNA region.png
137.56 kB
other_exon region.png
113.07 kB
intron region.png
114.96 kB
kmer_frequency_utr3.tsv
447 B
kmer_frequency_genome.tsv
3.83 kB
positional_distribution_genome.tsv
125.92 kB
positional_distribution_utr3.tsv
33.08 kB
utr3 region.png
115.60 kB
kmer_frequency_other_exon.tsv
426 B
genome region.png
161.42 kB
positional_distribution_other_exon.tsv
31.62 kB
Cutadapt (single-end)
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
591.67 kB
report.txt
718 B
fastqc
Directory
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
22.71 MB
STAR
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
12.18 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.10 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bam
85.33 MB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.79 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.65 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed.bw
19.95 kB
iCount xlsites
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
330.49 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
13.85 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
14.95 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
43.66 kB
igg-hek293-igg-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
iCount RNA-maps
results.tar.gz
281.32 kB

SDMA_HCT116_GSK3326595 500nM 1_48h_cut below 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
360.64 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
128.98 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
599.59 kB
stderr.txt
1.81 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
551.17 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
114.68 MB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
85.65 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.45 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
287.56 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.36 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
28.18 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
98.58 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
308.43 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
589.53 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
87.37 kB
Paraclu
peaks.bed.gz
1.92 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
349.61 kB
K-mers
other_exon region.png
117.84 kB
kmer_frequency_ncRNA.tsv
5.51 kB
positional_distribution_utr3.tsv
53.05 kB
intron region.png
188.06 kB
kmer_frequency_intron.tsv
4.75 kB
positional_distribution_other_exon.tsv
75.03 kB
utr3 region.png
114.57 kB
kmer_frequency_genome.tsv
5.87 kB
genome region.png
247.39 kB
positional_distribution_ncRNA.tsv
226.53 kB
kmer_frequency_utr3.tsv
802 B
positional_distribution_intron.tsv
151.03 kB
kmer_frequency_other_exon.tsv
1.19 kB
positional_distribution_genome.tsv
309.40 kB
ncRNA region.png
259.84 kB

SDMA_HCT116_GSK3326595 500nM 2_48h_cut below 50kDa_20181116_JU

iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
313.64 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
1.23 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
272.92 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
1.01 MB
Paraclu
peaks.bed.gz
3.85 kB
iCount RNA-maps
results.tar.gz
463.15 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
996 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
435 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
768.29 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
161.47 MB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
624.13 kB
K-mers
kmer_frequency_ncRNA.tsv
5.82 kB
kmer_frequency_utr3.tsv
2.47 kB
other_exon region.png
160.44 kB
intron region.png
180.58 kB
positional_distribution_genome.tsv
424.99 kB
positional_distribution_utr3.tsv
113.30 kB
positional_distribution_intron.tsv
201.38 kB
positional_distribution_other_exon.tsv
117.22 kB
kmer_frequency_genome.tsv
5.87 kB
kmer_frequency_intron.tsv
5.40 kB
genome region.png
232.67 kB
kmer_frequency_other_exon.tsv
2.87 kB
ncRNA region.png
266.61 kB
utr3 region.png
127.95 kB
positional_distribution_ncRNA.tsv
329.68 kB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
147.92 MB
report.txt
731 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
569.43 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
3.25 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
405.67 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
98.13 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
86.15 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
25.99 kB

SDMA_HEK293_Non crosslinked control_cut above 50kDa_20181116_JU

Cutadapt (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
565.51 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.fastq.gz
354.90 MB
report.txt
732 B
K-mers
positional_distribution_intron.tsv
263.64 kB
ncRNA region.png
256.36 kB
other_exon region.png
252.04 kB
kmer_frequency_utr3.tsv
4.63 kB
positional_distribution_utr3.tsv
173.30 kB
kmer_frequency_other_exon.tsv
5.34 kB
positional_distribution_genome.tsv
505.72 kB
utr3 region.png
148.48 kB
genome region.png
282.80 kB
kmer_frequency_intron.tsv
5.80 kB
intron region.png
262.96 kB
positional_distribution_ncRNA.tsv
428.10 kB
positional_distribution_other_exon.tsv
207.53 kB
kmer_frequency_genome.tsv
5.79 kB
kmer_frequency_ncRNA.tsv
5.88 kB
iCount RNA-maps
results.tar.gz
789.11 kB
Paraclu
peaks.bed.gz
6.41 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju.fastq.gz
368.90 MB
stderr.txt
1.83 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_fastqc.zip
580.98 kB
STAR
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
183.79 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.07 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed.bam
1.51 GB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
226.00 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.00 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_skipped.bam
3.88 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
747.47 kB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.36 MB
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
880.64 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1013 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
sdma-hek293-non-crosslinked-control-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.07 MB

SDMA_HCT116_AZ 9458 100nM 1_48h_cut below 50kDa_20181116_JU

iCount summary
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
428 B
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
332.67 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
986 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
125.90 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
592.33 kB
Paraclu
peaks.bed.gz
1.87 kB
iCount RNA-maps
results.tar.gz
356.91 kB
K-mers
kmer_frequency_ncRNA.tsv
5.35 kB
intron region.png
177.83 kB
kmer_frequency_intron.tsv
4.40 kB
other_exon region.png
113.00 kB
positional_distribution_utr3.tsv
53.32 kB
positional_distribution_ncRNA.tsv
226.85 kB
kmer_frequency_genome.tsv
5.84 kB
positional_distribution_intron.tsv
145.74 kB
kmer_frequency_utr3.tsv
772 B
kmer_frequency_other_exon.tsv
725 B
genome region.png
216.73 kB
utr3 region.png
111.76 kB
ncRNA region.png
262.97 kB
positional_distribution_other_exon.tsv
54.45 kB
positional_distribution_genome.tsv
309.19 kB
Cutadapt (single-end)
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
109.74 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
558.05 kB
STAR
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.49 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
85.21 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
31.06 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
258.97 MB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
22.76 kB
iCount xlsites
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.22 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
95.47 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
608.16 kB
sdma-hct116-az-9458-100nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
300.38 kB

SDMA_HCT116_AZ 9458 100nM 2_48h_cut below 50kDa_20181116_JU

STAR
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.72 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
37.16 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
184.74 MB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
23.58 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
53.77 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju.fastq.gz
72.61 MB
stderr.txt
1.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
572.29 kB
Cutadapt (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
65.85 MB
report.txt
728 B
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
541.92 kB
K-mers
intron region.png
176.54 kB
other_exon region.png
197.89 kB
positional_distribution_intron.tsv
176.21 kB
ncRNA region.png
231.95 kB
kmer_frequency_genome.tsv
5.89 kB
utr3 region.png
123.84 kB
kmer_frequency_other_exon.tsv
3.10 kB
kmer_frequency_ncRNA.tsv
5.54 kB
kmer_frequency_utr3.tsv
1.14 kB
positional_distribution_utr3.tsv
77.49 kB
positional_distribution_genome.tsv
356.35 kB
kmer_frequency_intron.tsv
5.14 kB
positional_distribution_other_exon.tsv
117.90 kB
genome region.png
228.88 kB
positional_distribution_ncRNA.tsv
261.96 kB
Paraclu
peaks.bed.gz
2.51 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
995 B
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
625.51 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
432 B
iCount RNA-maps
results.tar.gz
417.76 kB
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
217.74 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
808.76 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
703.30 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
190.81 kB

SDMA_HEK293_Non crosslinked control_cut below 50kDa_20181116_JU

K-mers
kmer_frequency_intron.tsv
3.49 kB
intron region.png
131.57 kB
positional_distribution_ncRNA.tsv
201.36 kB
positional_distribution_utr3.tsv
33.08 kB
kmer_frequency_utr3.tsv
447 B
kmer_frequency_other_exon.tsv
1.12 kB
genome region.png
216.32 kB
kmer_frequency_genome.tsv
5.73 kB
utr3 region.png
114.50 kB
positional_distribution_other_exon.tsv
76.37 kB
positional_distribution_intron.tsv
113.81 kB
kmer_frequency_ncRNA.tsv
4.86 kB
positional_distribution_genome.tsv
254.63 kB
other_exon region.png
119.74 kB
ncRNA region.png
202.09 kB
Paraclu
peaks.bed.gz
1.04 kB
FASTQ file (single-end)
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju.fastq.gz
70.00 MB
fastqc
Directory
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_fastqc.zip
594.78 kB
stderr.txt
1.83 kB
Cutadapt (single-end)
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.fastq.gz
65.56 MB
fastqc
Directory
report.txt
732 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
570.24 kB
iCount RNA-maps
results.tar.gz
352.01 kB
iCount summary
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
425 B
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
282.65 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
987 B
STAR
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
39.55 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam.bai
1.99 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.80 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bam
186.17 MB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
16.99 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed.bw
20.97 kB
iCount xlsites
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
208.30 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
340.42 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
60.10 kB
sdma-hek293-non-crosslinked-control-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
67.71 kB

SDMA_HCT116_GSK3326595 500nM 1_48h_cut below 50kDa_20181116_JU

Paraclu
peaks.bed.gz
1.89 kB
iCount RNA-maps
results.tar.gz
358.15 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_fastqc.zip
616.03 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju.fastq.gz
79.28 MB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
72.57 MB
report.txt
731 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
559.86 kB
K-mers
other_exon region.png
117.84 kB
kmer_frequency_ncRNA.tsv
5.51 kB
kmer_frequency_intron.tsv
4.75 kB
intron region.png
189.41 kB
positional_distribution_ncRNA.tsv
226.53 kB
positional_distribution_intron.tsv
151.03 kB
kmer_frequency_genome.tsv
5.87 kB
kmer_frequency_utr3.tsv
802 B
positional_distribution_utr3.tsv
53.05 kB
ncRNA region.png
264.45 kB
positional_distribution_other_exon.tsv
75.03 kB
genome region.png
241.50 kB
kmer_frequency_other_exon.tsv
1.19 kB
positional_distribution_genome.tsv
305.31 kB
utr3 region.png
114.57 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
426 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
989 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
345.12 kB
STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam
200.02 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.19 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
21.25 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
45.46 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed.bw
21.81 kB
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
96.63 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
302.24 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
85.59 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
457.71 kB

SDMA_HCT116_Control DMSO 2_48h_cut below 50kDa_20181116_JU

STAR
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
45.99 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam
239.06 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bam.bai
2.62 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.bw
23.35 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_SJ.out.tab
46.23 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_fastqc.zip
599.09 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju.fastq.gz
82.87 MB
stderr.txt
1.73 kB
Cutadapt (single-end)
report.txt
726 B
fastqc
Directory
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed.fastq.gz
78.33 MB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_fastqc.zip
551.80 kB
K-mers
kmer_frequency_ncRNA.tsv
5.50 kB
positional_distribution_intron.tsv
168.81 kB
positional_distribution_utr3.tsv
59.73 kB
ncRNA region.png
233.79 kB
genome region.png
233.89 kB
kmer_frequency_intron.tsv
4.92 kB
intron region.png
189.83 kB
positional_distribution_ncRNA.tsv
255.04 kB
utr3 region.png
125.77 kB
other_exon region.png
148.01 kB
kmer_frequency_genome.tsv
5.88 kB
kmer_frequency_utr3.tsv
868 B
kmer_frequency_other_exon.tsv
1.51 kB
positional_distribution_other_exon.tsv
85.02 kB
positional_distribution_genome.tsv
349.60 kB
iCount summary
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_gene.tsv
633.36 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single_summary_type.tsv
429 B
iCount RNA-maps
results.tar.gz
418.89 kB
iCount xlsites
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_reads_single.bed.gz
213.19 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bedgraph
693.01 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
771.31 kB
sdma-hct116-control-dmso-2-48h-cut-below-50kda-20181116-ju_trimmed_single.bed.gz
187.37 kB
Paraclu
peaks.bed.gz
2.48 kB

SDMA_HCT116_AZ 9458 100nM 2_48h_cut above 50kDa_20181116_JU

STAR
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.35 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
80.63 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
365.75 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
847.58 MB
FASTQ file (single-end)
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
207.75 MB
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
560.24 kB
stderr.txt
1.75 kB
iCount RNA-maps
results.tar.gz
1.07 MB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
201.51 MB
report.txt
727 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
536.12 kB
K-mers
intron region.png
263.38 kB
other_exon region.png
253.33 kB
kmer_frequency_intron.tsv
5.78 kB
kmer_frequency_genome.tsv
5.79 kB
positional_distribution_utr3.tsv
204.03 kB
kmer_frequency_utr3.tsv
5.23 kB
positional_distribution_ncRNA.tsv
495.86 kB
positional_distribution_genome.tsv
529.69 kB
positional_distribution_intron.tsv
290.68 kB
genome region.png
293.80 kB
positional_distribution_other_exon.tsv
278.00 kB
kmer_frequency_ncRNA.tsv
5.86 kB
kmer_frequency_other_exon.tsv
5.74 kB
utr3 region.png
237.07 kB
ncRNA region.png
272.68 kB
Paraclu
peaks.bed.gz
9.43 kB
iCount summary
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
437 B
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.40 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1016 B
iCount xlsites
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
4.84 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
2.13 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
2.45 MB
sdma-hct116-az-9458-100nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
9.27 MB

SDMA_HCT116_GSK3326595 500nM 2_48h_cut above 50kDa_20181116_JU

iCount RNA-maps
results.tar.gz
948.51 kB
STAR
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
80.49 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam
933.40 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
248.83 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.21 MB
Paraclu
peaks.bed.gz
7.72 kB
FASTQ file (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_fastqc.zip
575.66 kB
stderr.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju.fastq.gz
199.25 MB
Cutadapt (single-end)
fastqc
Directory
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
553.42 kB
report.txt
730 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
194.15 MB
K-mers
other_exon region.png
309.09 kB
kmer_frequency_intron.tsv
5.80 kB
positional_distribution_ncRNA.tsv
474.59 kB
positional_distribution_intron.tsv
277.32 kB
kmer_frequency_utr3.tsv
4.41 kB
intron region.png
220.02 kB
ncRNA region.png
270.74 kB
positional_distribution_genome.tsv
517.70 kB
utr3 region.png
184.72 kB
kmer_frequency_ncRNA.tsv
5.86 kB
kmer_frequency_genome.tsv
5.80 kB
positional_distribution_other_exon.tsv
240.59 kB
positional_distribution_utr3.tsv
170.15 kB
kmer_frequency_other_exon.tsv
5.53 kB
genome region.png
277.18 kB
iCount summary
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
438 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1010 B
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.27 MB
iCount xlsites
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.65 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.43 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.46 MB
sdma-hct116-gsk3326595-500nm-2-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
6.11 MB

SDMA_HCT116_Control DMSO 1_48h_cut above 50kDa_20181116_JU

Paraclu
peaks.bed.gz
7.25 kB
STAR
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
559.26 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
74.68 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
4.25 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
214.80 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
iCount RNA-maps
results.tar.gz
861.68 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.73 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju.fastq.gz
147.18 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
570.13 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
726 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
141.36 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
551.95 kB
K-mers
kmer_frequency_intron.tsv
5.84 kB
positional_distribution_ncRNA.tsv
426.51 kB
intron region.png
224.63 kB
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_genome.tsv
5.80 kB
other_exon region.png
274.84 kB
kmer_frequency_utr3.tsv
4.34 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_genome.tsv
506.61 kB
positional_distribution_other_exon.tsv
200.53 kB
utr3 region.png
149.69 kB
positional_distribution_utr3.tsv
165.28 kB
positional_distribution_intron.tsv
269.14 kB
genome region.png
318.90 kB
ncRNA region.png
282.91 kB
iCount summary
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
436 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
1009 B
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.24 MB
iCount xlsites
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
1.14 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
1.30 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
4.82 MB
sdma-hct116-control-dmso-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
3.19 MB

SDMA_HCT116_GSK3326595 500nM 1_48h_cut above 50kDa_20181116_JU

STAR
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam.bai
3.98 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_unmapped.out.mate1.fastq.gz
36.91 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_stats.txt
1.81 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_SJ.out.tab
145.88 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.bam
304.92 MB
Paraclu
peaks.bed.gz
4.04 kB
FASTQ file (single-end)
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju.fastq.gz
81.78 MB
stderr.txt
1.81 kB
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_fastqc.zip
570.94 kB
Cutadapt (single-end)
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed.fastq.gz
78.33 MB
report.txt
730 B
fastqc
Directory
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_fastqc.zip
549.12 kB
K-mers
kmer_frequency_intron.tsv
5.50 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_ncRNA.tsv
377.17 kB
positional_distribution_intron.tsv
191.89 kB
other_exon region.png
164.92 kB
ncRNA region.png
308.91 kB
intron region.png
219.45 kB
positional_distribution_utr3.tsv
134.41 kB
kmer_frequency_genome.tsv
5.85 kB
kmer_frequency_utr3.tsv
3.63 kB
utr3 region.png
134.17 kB
genome region.png
322.40 kB
kmer_frequency_other_exon.tsv
3.27 kB
positional_distribution_genome.tsv
447.00 kB
positional_distribution_other_exon.tsv
126.53 kB
iCount summary
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_subtype.tsv
992 B
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_gene.tsv
1.12 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single_summary_type.tsv
417 B
iCount xlsites
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_reads_single.bed.gz
986.28 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bedgraph
3.48 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_skipped.bam
2.93 kB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_singleAndMulti.bed.gz
2.52 MB
sdma-hct116-gsk3326595-500nm-1-48h-cut-above-50kda-20181116-ju_trimmed_single.bed.gz
868.63 kB
iCount RNA-maps
results.tar.gz
606.91 kB