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Folder iconchimera embryo RNAseq

Miha Modic
April 18, 2019
LIN28AGFP vs LIN28ANLSGFP e7.5 tetraploid embryos

MOD246A2_S101_L007

BBDuk (single-end)
fastqc
Directory
MOD246A2_S101_L007_R1_001_preprocessed.fastq.gz
1.15 GB
MOD246A2_S101_L007_R1_001_statistics.txt.gz
1.02 kB
Salmon Quant
salmon_output
Directory
MOD246A2_S101_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
559.29 kB
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A2_S101_L007_R1_001_preprocessed_tpm.txt.gz
157.29 kB
MOD246A2_S101_L007_R1_001_preprocessed_expressions.txt.gz
293.98 kB
MOD246A2_S101_L007_R1_001_preprocessed.sf
5.22 MB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.fastq.gz
397.47 MB
STAR
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam
307.95 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam.bai
2.14 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
30.99 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_SJ.out.tab
638.70 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
Samtools idxstats
idxstat_report.txt
3.26 kB
STAR
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
272.13 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam
84.69 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_SJ.out.tab
90.92 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam.bai
45.99 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
STAR
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam
2.99 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_SJ.out.tab
162 B
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
393.97 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
7.01 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
HISAT2
MOD246A2_S101_L007_R1_001_unmapped.out.mate1.fastq.gz
287.20 MB
MOD246A2_S101_L007_R1_001_junctions.txt
310.09 kB
MOD246A2_S101_L007_R1_001_stats.txt
221 B
MOD246A2_S101_L007_R1_001.bam
814.11 MB
MOD246A2_S101_L007_R1_001.bam.bai
2.13 MB
FASTQ file (single-end)
fastqc
Directory
MOD246A2_S101_L007_R1_001.fastq.gz
1.48 GB
stderr.txt
1.09 kB
MOD246A2_S101_L007_R1_001_fastqc.zip
398.61 kB
Cuffquant 2.2
MOD246A2_S101_L007_R1_001.cxb
120.82 MB

No Sample

Cuffnorm
cuffnorm_all_fpkm_exprs_raw.txt
1.73 MB
cuffnorm_all_fpkm_means.txt
1.41 MB
tss_groups.attr_table
82 B
tss_groups.fpkm_table
12 B
cds.fpkm_table
12 B
R_data.zip
3.51 MB
run.info
339 B
genes.attr_table
3.83 MB
tss_groups.count_table
12 B
isoforms.count_table
4.98 MB
cuffnorm_exprs_boxplot.pdf
4.82 kB
genes.fpkm_table
1.74 MB
isoforms.attr_table
9.87 MB
cds.count_table
12 B
genes.count_table
1.72 MB
cuffnorm_replicate_correlations.pdf
112.69 kB
isoforms.fpkm_table
5.03 MB
cuffnorm_all_fpkm_exprs_raw_scatter.png
114.03 kB
cds.attr_table
82 B
cuffnorm_exprs_fpkm_means.txt
336.97 kB
DESeq2
diffexp_deseq2.tab.gz
815.46 kB
de_file.tab.gz
542.46 kB
count_matrix.tab.gz
160.25 kB
Expression data (Cuffnorm)
MOD246A3_S102_L007_expression.tab.gz
223.68 kB
MOD246A3_S102_L007_expression_expressions.txt.gz
416.79 kB
Expression data (Cuffnorm)
MOD246A5_S104_L007_expression.tab.gz
219.14 kB
MOD246A5_S104_L007_expression_expressions.txt.gz
412.54 kB
Expression data (Cuffnorm)
MOD246A4_S103_L007_expression.tab.gz
223.01 kB
MOD246A4_S103_L007_expression_expressions.txt.gz
416.20 kB
Expression data (Cuffnorm)
MOD246A1_S100_L007_expression.tab.gz
218.56 kB
MOD246A1_S100_L007_expression_expressions.txt.gz
411.91 kB
FASTQ file (single-end)
MOD246A6_S105_L007_R1_001.fastq.gz
882.29 MB
MOD246A6_S105_L007_R1_001_fastqc.zip
408.61 kB
fastqc
Directory
stderr.txt
1.09 kB
Samtools idxstats
idxstat_report.txt
3.28 kB
FASTQ file (single-end)
fastqc
Directory
MOD246A1_S100_L007_R1_001.fastq.gz
1.30 GB
stderr.txt
1.09 kB
MOD246A1_S100_L007_R1_001_fastqc.zip
390.22 kB
FASTQ file (single-end)
fastqc
Directory
MOD246A5_S104_L007_R1_001.fastq.gz
1.26 GB
MOD246A5_S104_L007_R1_001_fastqc.zip
390.56 kB
stderr.txt
1.09 kB
FASTQ file (single-end)
fastqc
Directory
MOD246A4_S103_L007_R1_001_fastqc.zip
389.97 kB
MOD246A4_S103_L007_R1_001.fastq.gz
1.61 GB
stderr.txt
1.09 kB
FASTQ file (single-end)
fastqc
Directory
MOD246A3_S102_L007_R1_001.fastq.gz
1.78 GB
MOD246A3_S102_L007_R1_001_fastqc.zip
391.17 kB
stderr.txt
1.09 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
6.81 MB
BBDuk (single-end)
fastqc
Directory
MOD246A5_S104_L007_R1_001_preprocessed.fastq.gz
993.80 MB
MOD246A5_S104_L007_R1_001_statistics.txt.gz
1.01 kB
BBDuk (single-end)
fastqc
Directory
MOD246A1_S100_L007_R1_001_preprocessed.fastq.gz
1016.11 MB
MOD246A1_S100_L007_R1_001_statistics.txt.gz
1.11 kB
BBDuk (single-end)
fastqc
Directory
MOD246A4_S103_L007_R1_001_preprocessed.fastq.gz
1.25 GB
MOD246A4_S103_L007_R1_001_statistics.txt.gz
1.07 kB
BBDuk (single-end)
fastqc
Directory
MOD246A2_S101_L007_R1_001_preprocessed.fastq.gz
1.15 GB
MOD246A2_S101_L007_R1_001_statistics.txt.gz
1.02 kB
BBDuk (single-end)
MOD246A6_S105_L007_R1_001_preprocessed.fastq.gz
577.66 MB
fastqc
Directory
MOD246A6_S105_L007_R1_001_statistics.txt.gz
1.18 kB
Salmon Quant
salmon_output
Directory
MOD246A5_S104_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
631.43 kB
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A5_S104_L007_R1_001_preprocessed_tpm.txt.gz
174.06 kB
MOD246A5_S104_L007_R1_001_preprocessed.sf
5.24 MB
MOD246A5_S104_L007_R1_001_preprocessed_expressions.txt.gz
313.70 kB
BBDuk (single-end)
fastqc
Directory
MOD246A3_S102_L007_R1_001_statistics.txt.gz
1.09 kB
MOD246A3_S102_L007_R1_001_preprocessed.fastq.gz
1.37 GB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.fastq.gz
385.42 MB
Salmon Quant
salmon_output
Directory
MOD246A1_S100_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
625.30 kB
MOD246A1_S100_L007_R1_001_preprocessed_tpm.txt.gz
173.75 kB
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A1_S100_L007_R1_001_preprocessed_expressions.txt.gz
312.90 kB
MOD246A1_S100_L007_R1_001_preprocessed.sf
5.23 MB
Subsample FASTQ (single-end)
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.fastq.gz
385.31 MB
fastqc
Directory
Salmon Quant
salmon_output
Directory
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A4_S103_L007_R1_001_preprocessed_tpm.txt.gz
177.73 kB
MOD246A4_S103_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
639.16 kB
MOD246A4_S103_L007_R1_001_preprocessed_expressions.txt.gz
317.79 kB
MOD246A4_S103_L007_R1_001_preprocessed.sf
5.24 MB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.fastq.gz
390.45 MB
Salmon Quant
salmon_output
Directory
MOD246A2_S101_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
559.29 kB
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A2_S101_L007_R1_001_preprocessed_tpm.txt.gz
157.29 kB
MOD246A2_S101_L007_R1_001_preprocessed_expressions.txt.gz
293.98 kB
MOD246A2_S101_L007_R1_001_preprocessed.sf
5.22 MB
Salmon Quant
salmon_output
Directory
MOD246A6_S105_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
545.05 kB
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A6_S105_L007_R1_001_preprocessed_tpm.txt.gz
152.72 kB
MOD246A6_S105_L007_R1_001_preprocessed_expressions.txt.gz
289.67 kB
MOD246A6_S105_L007_R1_001_preprocessed.sf
5.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.fastq.gz
397.47 MB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.fastq.gz
361.53 MB
Salmon Quant
salmon_output
Directory
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A3_S102_L007_R1_001_preprocessed_tpm.txt.gz
177.73 kB
MOD246A3_S102_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
643.73 kB
MOD246A3_S102_L007_R1_001_preprocessed.sf
5.24 MB
MOD246A3_S102_L007_R1_001_preprocessed_expressions.txt.gz
317.89 kB
STAR
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
19.89 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam
360.04 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam.bai
2.36 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_SJ.out.tab
1.62 MB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.fastq.gz
389.35 MB
STAR
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
20.60 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam
356.14 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam.bai
2.33 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_SJ.out.tab
1.50 MB
Samtools idxstats
idxstat_report.txt
3.27 kB
STAR
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
260.59 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam.bai
58.87 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_SJ.out.tab
157.79 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam
89.96 MB
STAR
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
255.28 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam.bai
64.77 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam
92.67 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_SJ.out.tab
144.98 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
STAR
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam
361.03 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
23.29 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam.bai
2.50 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_SJ.out.tab
1.58 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
STAR
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam
3.48 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
381.93 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_SJ.out.tab
282 B
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
STAR
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
381.78 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam
2.72 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_SJ.out.tab
322 B
STAR
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
268.74 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam
86.46 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam.bai
57.38 kB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_SJ.out.tab
158.97 kB
STAR
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam
307.95 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam.bai
2.14 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
30.99 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_SJ.out.tab
638.70 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
Samtools idxstats
idxstat_report.txt
3.26 kB
STAR
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
386.95 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam
4.57 kB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_SJ.out.tab
322 B
STAR
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
272.13 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam
84.69 MB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_SJ.out.tab
90.92 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam.bai
45.99 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
STAR
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
124.91 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam.bai
2.17 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_SJ.out.tab
410.69 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam
199.76 MB
Samtools idxstats
idxstat_report.txt
3.26 kB
STAR
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
MOD246A2_S101_L007_R1_001_preprocessed_downsampled.bam
2.99 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_SJ.out.tab
162 B
MOD246A2_S101_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
393.97 MB
STAR
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam.bai
37.59 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam
57.46 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
280.48 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_SJ.out.tab
68.83 kB
STAR
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
17.90 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam.bai
2.31 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam
360.79 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_SJ.out.tab
1.70 MB
Samtools idxstats
idxstat_report.txt
3.27 kB
STAR
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam.bai
344 B
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_SJ.out.tab
322 B
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
358.20 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam
9.59 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
STAR
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
264.56 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam.bai
53.05 kB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam
87.83 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_SJ.out.tab
134.74 kB
QoRTs QC
qorts_report.zip
7.55 MB
qorts_output
Directory
STAR
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
385.81 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_SJ.out.tab
363 B
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam
3.83 kB
Samtools idxstats
idxstat_report.txt
3.28 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
7.50 MB
QoRTs QC
qorts_report.zip
7.53 MB
qorts_output
Directory
QoRTs QC
qorts_output
Directory
qorts_report.zip
7.01 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
QoRTs QC
qorts_output
Directory
qorts_report.zip
7.56 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
HISAT2
MOD246A2_S101_L007_R1_001_unmapped.out.mate1.fastq.gz
287.20 MB
MOD246A2_S101_L007_R1_001_junctions.txt
310.09 kB
MOD246A2_S101_L007_R1_001_stats.txt
221 B
MOD246A2_S101_L007_R1_001.bam
814.11 MB
MOD246A2_S101_L007_R1_001.bam.bai
2.13 MB
FASTQ file (single-end)
fastqc
Directory
MOD246A2_S101_L007_R1_001.fastq.gz
1.48 GB
stderr.txt
1.09 kB
MOD246A2_S101_L007_R1_001_fastqc.zip
398.61 kB
Cuffquant 2.2
MOD246A1_S100_L007_R1_001.cxb
120.82 MB
Cuffquant 2.2
MOD246A6_S105_L007_R1_001.cxb
120.82 MB
Cuffquant 2.2
MOD246A2_S101_L007_R1_001.cxb
120.82 MB
Cuffquant 2.2
MOD246A5_S104_L007_R1_001.cxb
120.82 MB
Cuffquant 2.2
MOD246A3_S102_L007_R1_001.cxb
120.82 MB
HISAT2
MOD246A1_S100_L007_R1_001_unmapped.out.mate1.fastq.gz
308.97 MB
MOD246A1_S100_L007_R1_001_stats.txt
221 B
MOD246A1_S100_L007_R1_001_junctions.txt
812.21 kB
MOD246A1_S100_L007_R1_001.bam
729.08 MB
MOD246A1_S100_L007_R1_001.bam.bai
2.34 MB
HISAT2
MOD246A4_S103_L007_R1_001_unmapped.out.mate1.fastq.gz
399.33 MB
MOD246A4_S103_L007_R1_001_junctions.txt
866.02 kB
MOD246A4_S103_L007_R1_001_stats.txt
222 B
MOD246A4_S103_L007_R1_001.bam
901.94 MB
MOD246A4_S103_L007_R1_001.bam.bai
2.65 MB
Cuffquant 2.2
MOD246A4_S103_L007_R1_001.cxb
120.82 MB
HISAT2
MOD246A5_S104_L007_R1_001_stats.txt
221 B
MOD246A5_S104_L007_R1_001_junctions.txt
867.57 kB
MOD246A5_S104_L007_R1_001_unmapped.out.mate1.fastq.gz
307.45 MB
MOD246A5_S104_L007_R1_001.bam
711.33 MB
MOD246A5_S104_L007_R1_001.bam.bai
2.35 MB
HISAT2
MOD246A6_S105_L007_R1_001_unmapped.out.mate1.fastq.gz
430.59 MB
MOD246A6_S105_L007_R1_001_junctions.txt
160.48 kB
MOD246A6_S105_L007_R1_001_stats.txt
220 B
MOD246A6_S105_L007_R1_001.bam
246.73 MB
MOD246A6_S105_L007_R1_001.bam.bai
2.11 MB
HISAT2
MOD246A3_S102_L007_R1_001_stats.txt
222 B
MOD246A3_S102_L007_R1_001_unmapped.out.mate1.fastq.gz
406.44 MB
MOD246A3_S102_L007_R1_001.bam
1006.66 MB
MOD246A3_S102_L007_R1_001.bam.bai
2.45 MB
MOD246A3_S102_L007_R1_001_junctions.txt
999.22 kB

MOD246A4_S103_L007

Expression data (Cuffnorm)
MOD246A4_S103_L007_expression.tab.gz
223.01 kB
MOD246A4_S103_L007_expression_expressions.txt.gz
416.20 kB
FASTQ file (single-end)
fastqc
Directory
MOD246A4_S103_L007_R1_001_fastqc.zip
389.97 kB
MOD246A4_S103_L007_R1_001.fastq.gz
1.61 GB
stderr.txt
1.09 kB
BBDuk (single-end)
fastqc
Directory
MOD246A4_S103_L007_R1_001_preprocessed.fastq.gz
1.25 GB
MOD246A4_S103_L007_R1_001_statistics.txt.gz
1.07 kB
Salmon Quant
salmon_output
Directory
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A4_S103_L007_R1_001_preprocessed_tpm.txt.gz
177.73 kB
MOD246A4_S103_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
639.16 kB
MOD246A4_S103_L007_R1_001_preprocessed_expressions.txt.gz
317.79 kB
MOD246A4_S103_L007_R1_001_preprocessed.sf
5.24 MB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.fastq.gz
390.45 MB
STAR
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam
361.03 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
23.29 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam.bai
2.50 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_SJ.out.tab
1.58 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
STAR
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
268.74 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam
86.46 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam.bai
57.38 kB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_SJ.out.tab
158.97 kB
STAR
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
386.95 MB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam
4.57 kB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A4_S103_L007_R1_001_preprocessed_downsampled_SJ.out.tab
322 B
Samtools idxstats
idxstat_report.txt
3.28 kB
QoRTs QC
qorts_report.zip
7.53 MB
qorts_output
Directory
MultiQC
multiqc_report.html
1.23 MB
multiqc_data
Directory
HISAT2
MOD246A4_S103_L007_R1_001_unmapped.out.mate1.fastq.gz
399.33 MB
MOD246A4_S103_L007_R1_001_junctions.txt
866.02 kB
MOD246A4_S103_L007_R1_001_stats.txt
222 B
MOD246A4_S103_L007_R1_001.bam
901.94 MB
MOD246A4_S103_L007_R1_001.bam.bai
2.65 MB
Cuffquant 2.2
MOD246A4_S103_L007_R1_001.cxb
120.82 MB

MOD246A5_S104_L007

Expression data (Cuffnorm)
MOD246A5_S104_L007_expression.tab.gz
219.14 kB
MOD246A5_S104_L007_expression_expressions.txt.gz
412.54 kB
Samtools idxstats
idxstat_report.txt
3.28 kB
FASTQ file (single-end)
fastqc
Directory
MOD246A5_S104_L007_R1_001.fastq.gz
1.26 GB
MOD246A5_S104_L007_R1_001_fastqc.zip
390.56 kB
stderr.txt
1.09 kB
BBDuk (single-end)
fastqc
Directory
MOD246A5_S104_L007_R1_001_preprocessed.fastq.gz
993.80 MB
MOD246A5_S104_L007_R1_001_statistics.txt.gz
1.01 kB
Salmon Quant
salmon_output
Directory
MOD246A5_S104_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
631.43 kB
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A5_S104_L007_R1_001_preprocessed_tpm.txt.gz
174.06 kB
MOD246A5_S104_L007_R1_001_preprocessed.sf
5.24 MB
MOD246A5_S104_L007_R1_001_preprocessed_expressions.txt.gz
313.70 kB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.fastq.gz
385.42 MB
STAR
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
19.89 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam
360.04 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam.bai
2.36 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_SJ.out.tab
1.62 MB
STAR
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
260.59 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam.bai
58.87 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_SJ.out.tab
157.79 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam
89.96 MB
STAR
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam
3.48 kB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
381.93 MB
MOD246A5_S104_L007_R1_001_preprocessed_downsampled_SJ.out.tab
282 B
MOD246A5_S104_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
QoRTs QC
qorts_report.zip
7.55 MB
qorts_output
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Cuffquant 2.2
MOD246A5_S104_L007_R1_001.cxb
120.82 MB
HISAT2
MOD246A5_S104_L007_R1_001_stats.txt
221 B
MOD246A5_S104_L007_R1_001_junctions.txt
867.57 kB
MOD246A5_S104_L007_R1_001_unmapped.out.mate1.fastq.gz
307.45 MB
MOD246A5_S104_L007_R1_001.bam
711.33 MB
MOD246A5_S104_L007_R1_001.bam.bai
2.35 MB

MOD246A1_S100_L007

Expression data (Cuffnorm)
MOD246A1_S100_L007_expression.tab.gz
218.56 kB
MOD246A1_S100_L007_expression_expressions.txt.gz
411.91 kB
FASTQ file (single-end)
fastqc
Directory
MOD246A1_S100_L007_R1_001.fastq.gz
1.30 GB
stderr.txt
1.09 kB
MOD246A1_S100_L007_R1_001_fastqc.zip
390.22 kB
BBDuk (single-end)
fastqc
Directory
MOD246A1_S100_L007_R1_001_preprocessed.fastq.gz
1016.11 MB
MOD246A1_S100_L007_R1_001_statistics.txt.gz
1.11 kB
Salmon Quant
salmon_output
Directory
MOD246A1_S100_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
625.30 kB
MOD246A1_S100_L007_R1_001_preprocessed_tpm.txt.gz
173.75 kB
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A1_S100_L007_R1_001_preprocessed_expressions.txt.gz
312.90 kB
MOD246A1_S100_L007_R1_001_preprocessed.sf
5.23 MB
Subsample FASTQ (single-end)
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.fastq.gz
385.31 MB
fastqc
Directory
STAR
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
20.60 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam
356.14 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam.bai
2.33 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_SJ.out.tab
1.50 MB
Samtools idxstats
idxstat_report.txt
3.27 kB
STAR
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
255.28 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam.bai
64.77 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam
92.67 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_SJ.out.tab
144.98 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
STAR
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
381.78 MB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
MOD246A1_S100_L007_R1_001_preprocessed_downsampled.bam
2.72 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A1_S100_L007_R1_001_preprocessed_downsampled_SJ.out.tab
322 B
QoRTs QC
qorts_output
Directory
qorts_report.zip
7.50 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Cuffquant 2.2
MOD246A1_S100_L007_R1_001.cxb
120.82 MB
HISAT2
MOD246A1_S100_L007_R1_001_unmapped.out.mate1.fastq.gz
308.97 MB
MOD246A1_S100_L007_R1_001_stats.txt
221 B
MOD246A1_S100_L007_R1_001_junctions.txt
812.21 kB
MOD246A1_S100_L007_R1_001.bam
729.08 MB
MOD246A1_S100_L007_R1_001.bam.bai
2.34 MB

MOD246A3_S102_L007

Expression data (Cuffnorm)
MOD246A3_S102_L007_expression.tab.gz
223.68 kB
MOD246A3_S102_L007_expression_expressions.txt.gz
416.79 kB
FASTQ file (single-end)
fastqc
Directory
MOD246A3_S102_L007_R1_001.fastq.gz
1.78 GB
MOD246A3_S102_L007_R1_001_fastqc.zip
391.17 kB
stderr.txt
1.09 kB
BBDuk (single-end)
fastqc
Directory
MOD246A3_S102_L007_R1_001_statistics.txt.gz
1.09 kB
MOD246A3_S102_L007_R1_001_preprocessed.fastq.gz
1.37 GB
Salmon Quant
salmon_output
Directory
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A3_S102_L007_R1_001_preprocessed_tpm.txt.gz
177.73 kB
MOD246A3_S102_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
643.73 kB
MOD246A3_S102_L007_R1_001_preprocessed.sf
5.24 MB
MOD246A3_S102_L007_R1_001_preprocessed_expressions.txt.gz
317.89 kB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.fastq.gz
389.35 MB
STAR
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
17.90 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam.bai
2.31 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam
360.79 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_SJ.out.tab
1.70 MB
Samtools idxstats
idxstat_report.txt
3.27 kB
STAR
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
264.56 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam.bai
53.05 kB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam
87.83 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_SJ.out.tab
134.74 kB
STAR
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
385.81 MB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam.bai
416 B
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_SJ.out.tab
363 B
MOD246A3_S102_L007_R1_001_preprocessed_downsampled_stats.txt
1.77 kB
MOD246A3_S102_L007_R1_001_preprocessed_downsampled.bam
3.83 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
7.56 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Cuffquant 2.2
MOD246A3_S102_L007_R1_001.cxb
120.82 MB
HISAT2
MOD246A3_S102_L007_R1_001_stats.txt
222 B
MOD246A3_S102_L007_R1_001_unmapped.out.mate1.fastq.gz
406.44 MB
MOD246A3_S102_L007_R1_001.bam
1006.66 MB
MOD246A3_S102_L007_R1_001.bam.bai
2.45 MB
MOD246A3_S102_L007_R1_001_junctions.txt
999.22 kB

MOD246A6_S105_L007

FASTQ file (single-end)
MOD246A6_S105_L007_R1_001.fastq.gz
882.29 MB
MOD246A6_S105_L007_R1_001_fastqc.zip
408.61 kB
fastqc
Directory
stderr.txt
1.09 kB
QoRTs QC
qorts_output
Directory
qorts_report.zip
6.81 MB
BBDuk (single-end)
MOD246A6_S105_L007_R1_001_preprocessed.fastq.gz
577.66 MB
fastqc
Directory
MOD246A6_S105_L007_R1_001_statistics.txt.gz
1.18 kB
Salmon Quant
salmon_output
Directory
MOD246A6_S105_L007_R1_001_preprocessed_transcripts_tpm.txt.gz
545.05 kB
tx2gene_Mus_musculus.GRCm38.92.ercc.sirv.txt
4.91 MB
MOD246A6_S105_L007_R1_001_preprocessed_tpm.txt.gz
152.72 kB
MOD246A6_S105_L007_R1_001_preprocessed_expressions.txt.gz
289.67 kB
MOD246A6_S105_L007_R1_001_preprocessed.sf
5.20 MB
Subsample FASTQ (single-end)
fastqc
Directory
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.fastq.gz
361.53 MB
STAR
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
124.91 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam.bai
2.17 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_SJ.out.tab
410.69 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_stats.txt
1.81 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam
199.76 MB
Samtools idxstats
idxstat_report.txt
3.26 kB
STAR
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam.bai
37.59 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam
57.46 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_stats.txt
1.80 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
280.48 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_SJ.out.tab
68.83 kB
STAR
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam.bai
344 B
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_SJ.out.tab
322 B
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
358.20 MB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled.bam
9.59 kB
MOD246A6_S105_L007_R1_001_preprocessed_downsampled_stats.txt
1.78 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
Cuffquant 2.2
MOD246A6_S105_L007_R1_001.cxb
120.82 MB
HISAT2
MOD246A6_S105_L007_R1_001_unmapped.out.mate1.fastq.gz
430.59 MB
MOD246A6_S105_L007_R1_001_junctions.txt
160.48 kB
MOD246A6_S105_L007_R1_001_stats.txt
220 B
MOD246A6_S105_L007_R1_001.bam
246.73 MB
MOD246A6_S105_L007_R1_001.bam.bai
2.11 MB