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Folder iconRBM7_iCLIP

Julian Zagalak
March 18, 2019
Decipering the role of RBM7 in DDR. iCLIP experiments were performed using an MS2 antibody targeting FLAG (Sigma). FLAG tag protein induced with doxycycline. Cell lines treated with DMSO or 4NQ0 as indicated

No Sample

FASTQ file (single-end)
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju.fastq.gz
59.50 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_fastqc.zip
334.10 kB
stderr.txt
1.66 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
702 B
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.fastq.gz
132.78 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_fastqc.zip
337.16 kB
iCount RNA-maps
results.tar.gz
1.02 MB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.bam
42.69 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
3.13 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.bam.bai
3.12 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_SJ.out.tab
82.11 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.bw
36.31 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_stats.txt
1.80 kB
iCount RNA-maps
results.tar.gz
1.39 MB
iCount clusters
RBM7_HEK293_DMSO_grouped_clustered.bedgraph
306.59 kB
RBM7_HEK293_DMSO_grouped_clustered.bed.gz
131.99 kB
Cutadapt (single-end)
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.fastq.gz
60.92 MB
report.txt
722 B
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_fastqc.zip
332.60 kB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
8.14 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.bw
50.32 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.bam.bai
3.13 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_SJ.out.tab
272.98 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.bam
113.94 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_stats.txt
1.80 kB
FASTQ file (single-end)
LoisLane.fastq.gz
819.76 MB
fastqc
Directory
stderr.txt
775 B
LoisLane_fastqc.zip
380.13 kB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single_summary_subtype.tsv
643 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single_summary_gene.tsv
902.42 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single_summary_type.tsv
267 B
iCount RNA-maps
results.tar.gz
606.68 kB
STAR
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
24.65 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed.bam.bai
3.59 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed.bam
383.44 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_SJ.out.tab
770.38 kB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_stats.txt
1.81 kB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single_summary_type.tsv
267 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single_summary_subtype.tsv
645 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single_summary_gene.tsv
1.07 MB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
520 B
Cutadapt (single-end)
fastqc
Directory
report.txt
722 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.fastq.gz
90.69 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_fastqc.zip
331.42 kB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
11.43 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_stats.txt
1.81 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.bam
168.01 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_SJ.out.tab
392.97 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.bam.bai
3.19 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.bw
62.83 kB
FASTQ file (single-end)
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju.fastq.gz
19.38 MB
stderr.txt
1.66 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_fastqc.zip
359.07 kB
FASTQ file (single-end)
fastqc
Directory
rbm7-hek293-dmso-repl1-20190318-ju.fastq.gz
129.71 MB
stderr.txt
1.26 kB
rbm7-hek293-dmso-repl1-20190318-ju_fastqc.zip
342.85 kB
FASTQ file (single-end)
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju.fastq.gz
88.57 MB
fastqc
Directory
stderr.txt
1.66 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_fastqc.zip
330.93 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.26 kB
rbm7-hek293-dmso-repl2-20190318-ju.fastq.gz
212.67 MB
rbm7-hek293-dmso-repl2-20190318-ju_fastqc.zip
342.28 kB
FASTQ file (single-end)
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju.fastq.gz
19.56 MB
fastqc
Directory
stderr.txt
1.66 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_fastqc.zip
353.95 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
34 B
nomatch_fastqc.zip
554.95 kB
nomatch.fastq.gz
520 B
Cutadapt (single-end)
fastqc
Directory
report.txt
702 B
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_fastqc.zip
337.16 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.fastq.gz
132.78 MB
STAR
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
15.97 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_SJ.out.tab
488.32 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_stats.txt
1.80 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.bam
235.74 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.bw
94.66 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.bam.bai
3.71 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
702 B
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_fastqc.zip
343.31 kB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed.fastq.gz
217.62 MB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_skipped.bam
3.94 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single.bedgraph
24.62 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single.bed.gz
5.43 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_singleAndMulti.bed.gz
7.29 MB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single_summary_type.tsv
268 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single_summary_subtype.tsv
650 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single_summary_gene.tsv
1.16 MB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_singleAndMulti.bed.gz
5.02 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single.bed.gz
3.67 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_skipped.bam
3.39 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single.bedgraph
16.43 MB
Cutadapt (single-end)
report.txt
721 B
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.fastq.gz
19.99 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_fastqc.zip
352.77 kB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_skipped.bam
3.15 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single.bed.gz
1.22 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_singleAndMulti.bed.gz
2.10 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single.bedgraph
5.19 MB
iCount xlsites
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single.bed.gz
18.29 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_singleAndMulti.bed.gz
25.57 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single.bedgraph
85.00 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_skipped.bam
3.82 kB
iCount summary
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single_summary_type.tsv
273 B
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single_summary_subtype.tsv
661 B
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single_summary_gene.tsv
1.38 MB
iCount group
RBM7_HEK293_DMSO_grouped.bed.gz
28.72 MB
RBM7_HEK293_DMSO_grouped.bedgraph
134.69 MB
iCount RNA-maps
results.tar.gz
1.78 MB
iCount xlsites
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single.bed.gz
11.17 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_skipped.bam
3.92 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_singleAndMulti.bed.gz
15.70 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single.bedgraph
51.34 MB
iCount summary
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single_summary_type.tsv
270 B
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single_summary_gene.tsv
1.27 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single_summary_subtype.tsv
653 B
Cutadapt (single-end)
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_fastqc.zip
355.51 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.fastq.gz
19.75 MB
report.txt
721 B
iCount RNA-maps
results.tar.gz
882.10 kB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
3.03 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.bam.bai
3.11 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.bam
41.13 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_stats.txt
1.80 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.bw
37.27 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_SJ.out.tab
80.05 kB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_skipped.bam
3.16 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single.bed.gz
1.25 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_singleAndMulti.bed.gz
2.11 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single.bedgraph
5.35 MB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single_summary_gene.tsv
906.33 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single_summary_type.tsv
266 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single_summary_subtype.tsv
644 B
iCount RNA-maps
results.tar.gz
622.27 kB
STAR
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
15.97 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.bam.bai
3.71 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_SJ.out.tab
488.32 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.bam
235.74 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.bw
94.66 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_stats.txt
1.80 kB
Cutadapt (single-end)
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.fastq.gz
19.75 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_fastqc.zip
355.51 kB
report.txt
721 B
iCount summary
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single_summary_subtype.tsv
653 B
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single_summary_type.tsv
270 B
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single_summary_gene.tsv
1.27 MB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.bam.bai
3.12 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
3.13 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.bam
42.69 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_stats.txt
1.80 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.bw
36.31 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_SJ.out.tab
82.11 kB
Upload iCount sample annotation
iclip_annotation_template-Oct-19-2018.tab.gz
786 B
iclip_annotation_template-Oct-19-2018.xlsx
23.64 kB
iCount RNA-maps
results.tar.gz
1.02 MB
Cutadapt (single-end)
report.txt
722 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_fastqc.zip
332.60 kB
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.fastq.gz
60.92 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
722 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.fastq.gz
90.69 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_fastqc.zip
331.42 kB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.bam.bai
3.13 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_stats.txt
1.80 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.bam
113.94 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
8.14 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_SJ.out.tab
272.98 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.bw
50.32 kB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.bam
41.13 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_stats.txt
1.80 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.bam.bai
3.11 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
3.03 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_SJ.out.tab
80.05 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.bw
37.27 kB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
11.43 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.bam.bai
3.19 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.bam
168.02 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.bw
62.83 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_SJ.out.tab
392.97 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_stats.txt
1.81 kB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single_summary_subtype.tsv
644 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single_summary_type.tsv
266 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single_summary_gene.tsv
906.33 kB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single_summary_gene.tsv
1.16 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single_summary_type.tsv
268 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single_summary_subtype.tsv
650 B
iCount xlsites
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_singleAndMulti.bed.gz
25.57 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single.bed.gz
18.29 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single.bedgraph
85.00 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_skipped.bam
3.82 kB
iCount clusters
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_clustered.bedgraph
111.82 kB
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_clustered.bed.gz
59.69 kB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single_summary_gene.tsv
1.07 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single_summary_type.tsv
267 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single_summary_subtype.tsv
645 B
Cutadapt (single-end)
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_fastqc.zip
352.77 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.fastq.gz
19.99 MB
fastqc
Directory
report.txt
721 B
STAR
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
24.65 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed.bam
383.45 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_stats.txt
1.81 kB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_SJ.out.tab
770.38 kB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed.bam.bai
3.59 MB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_skipped.bam
3.94 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single.bed.gz
5.43 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_singleAndMulti.bed.gz
7.29 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single.bedgraph
24.62 MB
iCount group
RBM7_HEK293_4-nitroquinoline N-oxide_grouped.bed.gz
11.02 MB
RBM7_HEK293_4-nitroquinoline N-oxide_grouped.bedgraph
50.70 MB
iCount RNA-maps
results.tar.gz
882.11 kB
iCount RNA-maps
results.tar.gz
622.27 kB
iCount RNA-maps
results.tar.gz
1.78 MB
iCount RNA-maps
results.tar.gz
606.68 kB
Cutadapt (single-end)
fastqc
Directory
rbm7-hek293-dmso-repl2-20190318-ju_trimmed.fastq.gz
217.62 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_fastqc.zip
343.31 kB
report.txt
702 B
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single.bed.gz
1.22 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single.bedgraph
5.19 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_singleAndMulti.bed.gz
2.10 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_skipped.bam
3.15 kB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single.bedgraph
5.35 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single.bed.gz
1.25 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_skipped.bam
3.16 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_singleAndMulti.bed.gz
2.11 MB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_singleAndMulti.bed.gz
5.02 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single.bed.gz
3.67 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_skipped.bam
3.39 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single.bedgraph
16.43 MB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single_summary_type.tsv
267 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single_summary_subtype.tsv
643 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single_summary_gene.tsv
902.42 kB
iCount xlsites
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_skipped.bam
3.92 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single.bed.gz
11.17 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single.bedgraph
51.34 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_singleAndMulti.bed.gz
15.70 MB
iCount RNA-maps
results.tar.gz
1.39 MB
iCount summary
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single_summary_type.tsv
273 B
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single_summary_subtype.tsv
661 B
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single_summary_gene.tsv
1.38 MB
iCount annotate
RBM7_HEK293_DMSO_grouped_annotated.bedgraph
134.69 MB
RBM7_HEK293_DMSO_grouped_annotated.bed.gz
35.42 MB
iCount RNA-maps
results.tar.gz
1.42 MB
iCount annotate
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_annotated.bed.gz
14.15 MB
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_annotated.bedgraph
50.70 MB
iCount summary
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_summary_gene.tsv
1.33 MB
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_summary_type.tsv
270 B
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_summary_subtype.tsv
654 B
iCount RNA-maps
results.tar.gz
2.23 MB
iCount summary
RBM7_HEK293_DMSO_grouped_summary_subtype.tsv
663 B
RBM7_HEK293_DMSO_grouped_summary_type.tsv
273 B
RBM7_HEK293_DMSO_grouped_summary_gene.tsv
1.51 MB
iCount peaks
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_peaks.bed.gz
136.84 kB
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_scores.tsv.gz
8.46 MB
RBM7_HEK293_4-nitroquinoline N-oxide_grouped_peaks.bedgraph
466.07 kB
iCount peaks
RBM7_HEK293_DMSO_grouped_scores.tsv.gz
20.69 MB
RBM7_HEK293_DMSO_grouped_peaks.bed.gz
283.57 kB
RBM7_HEK293_DMSO_grouped_peaks.bedgraph
1.03 MB

RBM7_HEK293_4-nitroquinoline N-oxide repl2_20190318_JU

FASTQ file (single-end)
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju.fastq.gz
19.38 MB
stderr.txt
1.66 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_fastqc.zip
359.07 kB
Cutadapt (single-end)
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_fastqc.zip
355.51 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.fastq.gz
19.75 MB
report.txt
721 B
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
3.03 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.bam.bai
3.11 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.bam
41.13 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_stats.txt
1.80 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed.bw
37.27 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_SJ.out.tab
80.05 kB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_skipped.bam
3.16 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single.bed.gz
1.25 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_singleAndMulti.bed.gz
2.11 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single.bedgraph
5.35 MB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single_summary_gene.tsv
906.33 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single_summary_type.tsv
266 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl2-20190318-ju_trimmed_single_summary_subtype.tsv
644 B
iCount RNA-maps
results.tar.gz
622.27 kB

RBM7_HEK293_4-nitroquinoline N-oxide repl3_20190318_JU

Cutadapt (single-end)
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.fastq.gz
60.92 MB
report.txt
722 B
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_fastqc.zip
332.60 kB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
8.14 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.bw
50.32 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.bam.bai
3.13 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_SJ.out.tab
272.98 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed.bam
113.94 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_stats.txt
1.80 kB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single_summary_type.tsv
267 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single_summary_subtype.tsv
645 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single_summary_gene.tsv
1.07 MB
FASTQ file (single-end)
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju.fastq.gz
59.50 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_fastqc.zip
334.10 kB
stderr.txt
1.66 kB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_singleAndMulti.bed.gz
5.02 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single.bed.gz
3.67 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_skipped.bam
3.39 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl3-20190318-ju_trimmed_single.bedgraph
16.43 MB
iCount RNA-maps
results.tar.gz
882.10 kB

RBM7_HEK293_4-nitroquinoline N-oxide repl4_20190318_JU

STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.bam
42.69 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
3.13 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.bam.bai
3.12 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_SJ.out.tab
82.11 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.bw
36.31 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_stats.txt
1.80 kB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single_summary_subtype.tsv
643 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single_summary_gene.tsv
902.42 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single_summary_type.tsv
267 B
iCount RNA-maps
results.tar.gz
606.68 kB
FASTQ file (single-end)
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju.fastq.gz
19.56 MB
fastqc
Directory
stderr.txt
1.66 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_fastqc.zip
353.95 kB
Cutadapt (single-end)
report.txt
721 B
fastqc
Directory
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed.fastq.gz
19.99 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_fastqc.zip
352.77 kB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_skipped.bam
3.15 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single.bed.gz
1.22 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_singleAndMulti.bed.gz
2.10 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl4-20190318-ju_trimmed_single.bedgraph
5.19 MB

LoisLane.fastq.gz

FASTQ file (single-end)
LoisLane.fastq.gz
819.76 MB
fastqc
Directory
stderr.txt
775 B
LoisLane_fastqc.zip
380.13 kB

nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
34 B
nomatch_fastqc.zip
554.95 kB
nomatch.fastq.gz
520 B

RBM7_HEK293_DMSO repl1_20190318_JU

iCount RNA-maps
results.tar.gz
1.39 MB
FASTQ file (single-end)
fastqc
Directory
rbm7-hek293-dmso-repl1-20190318-ju.fastq.gz
129.71 MB
stderr.txt
1.26 kB
rbm7-hek293-dmso-repl1-20190318-ju_fastqc.zip
342.85 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
702 B
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_fastqc.zip
337.16 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.fastq.gz
132.78 MB
STAR
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
15.97 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_SJ.out.tab
488.32 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_stats.txt
1.80 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.bam
235.74 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.bw
94.66 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed.bam.bai
3.71 MB
iCount xlsites
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single.bed.gz
11.17 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_skipped.bam
3.92 kB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_singleAndMulti.bed.gz
15.70 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single.bedgraph
51.34 MB
iCount summary
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single_summary_type.tsv
270 B
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single_summary_gene.tsv
1.27 MB
rbm7-hek293-dmso-repl1-20190318-ju_trimmed_single_summary_subtype.tsv
653 B

RBM7_HEK293_4-nitroquinoline N-oxide repl1_20190318_JU

iCount RNA-maps
results.tar.gz
1.02 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
722 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.fastq.gz
90.69 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_fastqc.zip
331.42 kB
STAR
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
11.43 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_stats.txt
1.81 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.bam
168.01 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_SJ.out.tab
392.97 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.bam.bai
3.19 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed.bw
62.83 kB
FASTQ file (single-end)
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju.fastq.gz
88.57 MB
fastqc
Directory
stderr.txt
1.66 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_fastqc.zip
330.93 kB
iCount xlsites
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_skipped.bam
3.94 kB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single.bedgraph
24.62 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single.bed.gz
5.43 MB
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_singleAndMulti.bed.gz
7.29 MB
iCount summary
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single_summary_type.tsv
268 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single_summary_subtype.tsv
650 B
rbm7-hek293-4-nitroquinoline-n-oxide-repl1-20190318-ju_trimmed_single_summary_gene.tsv
1.16 MB

RBM7_HEK293_DMSO repl2_20190318_JU

STAR
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_unmapped.out.mate1.fastq.gz
24.65 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed.bam.bai
3.59 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed.bam
383.44 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_SJ.out.tab
770.38 kB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_stats.txt
1.81 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.26 kB
rbm7-hek293-dmso-repl2-20190318-ju.fastq.gz
212.67 MB
rbm7-hek293-dmso-repl2-20190318-ju_fastqc.zip
342.28 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
702 B
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_fastqc.zip
343.31 kB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed.fastq.gz
217.62 MB
iCount xlsites
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single.bed.gz
18.29 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_singleAndMulti.bed.gz
25.57 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single.bedgraph
85.00 MB
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_skipped.bam
3.82 kB
iCount summary
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single_summary_type.tsv
273 B
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single_summary_subtype.tsv
661 B
rbm7-hek293-dmso-repl2-20190318-ju_trimmed_single_summary_gene.tsv
1.38 MB
iCount RNA-maps
results.tar.gz
1.78 MB