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Folder iconSDMA-iCLIP_RNAseq

Paulo Gameiro
Feb. 1, 2019
These RNAseq fastq files are the matched to the SDMA-iCLIP samples upon PRMT5 inhibition in HCT116 cells: treatment with DMSO, GSK_500nM or Lilly_100nM (biological triplicates)

deep_DMSO2

Samtools idxstats
idxstat_report.txt
5.91 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
FASTQ file (paired-end)
DMSO2_r1.fastq.gz
2.34 GB
DMSO2_r2.fastq.gz
2.51 GB
fastqc
Directory
stderr.txt
1.63 kB
DMSO2_r2_fastqc.zip
529.71 kB
DMSO2_r1_fastqc.zip
517.17 kB
BBDuk (paired-end)
DMSO2_r1_preprocessed.fastq.gz
1.72 GB
DMSO2_r2_preprocessed.fastq.gz
1.72 GB
fastqc
Directory
DMSO2_r1_statistics.txt.gz
788 B
Subsample FASTQ (paired-end)
fastqc
Directory
DMSO2_r1_preprocessed_downsampled.fastq.gz
55.00 MB
DMSO2_r2_preprocessed_downsampled.fastq.gz
54.99 MB
STAR
DMSO2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
54.70 MB
DMSO2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.70 MB
DMSO2_r1_preprocessed_downsampled.bam
233.95 kB
DMSO2_r1_preprocessed_downsampled.bam.bai
696 B
DMSO2_r1_preprocessed_downsampled_SJ.out.tab
5.56 kB
DMSO2_r1_preprocessed_downsampled_stats.txt
1.78 kB
STAR
DMSO2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.03 MB
DMSO2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.02 MB
DMSO2_r1_preprocessed_downsampled.bam
2.21 MB
DMSO2_r1_preprocessed_downsampled.bam.bai
336 B
DMSO2_r1_preprocessed_downsampled_SJ.out.tab
361 B
DMSO2_r1_preprocessed_downsampled_stats.txt
1.78 kB
STAR
DMSO2_r1_preprocessed.bam.bai
3.04 MB
DMSO2_r2_preprocessed_unmapped.out.mate2.fastq.gz
36.67 MB
DMSO2_r1_preprocessed.bam
2.86 GB
DMSO2_r1_preprocessed_unmapped.out.mate1.fastq.gz
39.24 MB
DMSO2_r1_preprocessed_SJ.out.tab
7.71 MB
DMSO2_r1_preprocessed_stats.txt
1.82 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
345 B
DMSO2_r1_preprocessed_rc.tab.gz
248.57 kB
DMSO2_r1_preprocessed_tpm.tab.gz
373.15 kB
DMSO2_r1_preprocessed_featureCounts_rc.txt.gz
4.43 MB
DMSO2_r1_preprocessed_cpm.tab.gz
283.17 kB
DMSO2_r1_preprocessed_expressions.txt.gz
1.05 MB
DMSO2_r1_preprocessed_fpkm.tab.gz
373.72 kB

deep_DMSO1

FASTQ file (paired-end)
fastqc
Directory
stderr.txt
1.63 kB
DMSO1_r1.fastq.gz
3.08 GB
DMSO1_r2.fastq.gz
3.26 GB
DMSO1_r2_fastqc.zip
516.80 kB
DMSO1_r1_fastqc.zip
515.17 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (paired-end)
DMSO1_r2_preprocessed.fastq.gz
2.35 GB
DMSO1_r1_preprocessed.fastq.gz
2.35 GB
DMSO1_r1_statistics.txt.gz
886 B
fastqc
Directory
Subsample FASTQ (paired-end)
fastqc
Directory
DMSO1_r2_preprocessed_downsampled.fastq.gz
57.21 MB
DMSO1_r1_preprocessed_downsampled.fastq.gz
57.21 MB
STAR
DMSO1_r1_preprocessed_downsampled.bam.bai
336 B
DMSO1_r1_preprocessed_downsampled.bam
1.55 MB
DMSO1_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO1_r1_preprocessed_downsampled_SJ.out.tab
154 B
DMSO1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.72 MB
DMSO1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.73 MB
STAR
DMSO1_r2_preprocessed_unmapped.out.mate2.fastq.gz
38.09 MB
DMSO1_r1_preprocessed.bam.bai
3.37 MB
DMSO1_r1_preprocessed_SJ.out.tab
9.04 MB
DMSO1_r1_preprocessed.bam
3.62 GB
DMSO1_r1_preprocessed_unmapped.out.mate1.fastq.gz
40.39 MB
DMSO1_r1_preprocessed_stats.txt
1.82 kB
STAR
DMSO1_r1_preprocessed_downsampled.bam
271.36 kB
DMSO1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.92 MB
DMSO1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.91 MB
DMSO1_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO1_r1_preprocessed_downsampled_SJ.out.tab
6.20 kB
DMSO1_r1_preprocessed_downsampled.bam.bai
584 B
featureCounts
DMSO1_r1_preprocessed_rc.tab.gz
251.29 kB
DMSO1_r1_preprocessed_featureCounts_rc.txt.gz
4.44 MB
featureCounts_rc.txt.summary
344 B
results
Directory
DMSO1_r1_preprocessed_fpkm.tab.gz
384.92 kB
DMSO1_r1_preprocessed_tpm.tab.gz
384.21 kB
DMSO1_r1_preprocessed_cpm.tab.gz
291.77 kB
DMSO1_r1_preprocessed_expressions.txt.gz
1.08 MB

deep_DMSO3

FASTQ file (paired-end)
DMSO3_r1_fastqc.zip
516.69 kB
fastqc
Directory
DMSO3_r2.fastq.gz
3.40 GB
DMSO3_r1.fastq.gz
3.19 GB
DMSO3_r2_fastqc.zip
523.51 kB
stderr.txt
1.63 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (paired-end)
fastqc
Directory
DMSO3_r1_statistics.txt.gz
988 B
DMSO3_r2_preprocessed.fastq.gz
2.39 GB
DMSO3_r1_preprocessed.fastq.gz
2.40 GB
Subsample FASTQ (paired-end)
DMSO3_r1_preprocessed_downsampled.fastq.gz
54.75 MB
fastqc
Directory
DMSO3_r2_preprocessed_downsampled.fastq.gz
54.60 MB
STAR
DMSO3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.43 MB
DMSO3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
54.29 MB
DMSO3_r1_preprocessed_downsampled.bam
301.02 kB
DMSO3_r1_preprocessed_downsampled.bam.bai
600 B
DMSO3_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO3_r1_preprocessed_downsampled_SJ.out.tab
7.14 kB
STAR
DMSO3_r1_preprocessed_downsampled.bam.bai
264 B
DMSO3_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
52.84 MB
DMSO3_r1_preprocessed_downsampled.bam
1.90 MB
DMSO3_r1_preprocessed_downsampled_SJ.out.tab
155 B
DMSO3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.99 MB
STAR
DMSO3_r1_preprocessed_unmapped.out.mate1.fastq.gz
15.78 MB
DMSO3_r2_preprocessed_unmapped.out.mate2.fastq.gz
15.32 MB
DMSO3_r1_preprocessed.bam
3.98 GB
DMSO3_r1_preprocessed.bam.bai
3.48 MB
DMSO3_r1_preprocessed_SJ.out.tab
9.02 MB
DMSO3_r1_preprocessed_stats.txt
1.82 kB
featureCounts
results
Directory
DMSO3_r1_preprocessed_rc.tab.gz
252.26 kB
featureCounts_rc.txt.summary
345 B
DMSO3_r1_preprocessed_featureCounts_rc.txt.gz
4.44 MB
DMSO3_r1_preprocessed_tpm.tab.gz
387.07 kB
DMSO3_r1_preprocessed_expressions.txt.gz
1.09 MB
DMSO3_r1_preprocessed_cpm.tab.gz
294.94 kB
DMSO3_r1_preprocessed_fpkm.tab.gz
387.62 kB

deep_GSK1

FASTQ file (paired-end)
fastqc
Directory
stderr.txt
1.59 kB
GSK1_r1.fastq.gz
2.65 GB
GSK1_r2.fastq.gz
2.76 GB
GSK1_r2_fastqc.zip
523.16 kB
GSK1_r1_fastqc.zip
523.79 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
BBDuk (paired-end)
fastqc
Directory
GSK1_r2_preprocessed.fastq.gz
1.96 GB
GSK1_r1_statistics.txt.gz
899 B
GSK1_r1_preprocessed.fastq.gz
1.96 GB
Subsample FASTQ (paired-end)
fastqc
Directory
GSK1_r2_preprocessed_downsampled.fastq.gz
53.95 MB
GSK1_r1_preprocessed_downsampled.fastq.gz
53.96 MB
STAR
GSK1_r1_preprocessed.bam.bai
3.23 MB
GSK1_r2_preprocessed_unmapped.out.mate2.fastq.gz
14.76 MB
GSK1_r1_preprocessed.bam
3.20 GB
GSK1_r1_preprocessed_stats.txt
1.82 kB
GSK1_r1_preprocessed_unmapped.out.mate1.fastq.gz
15.46 MB
GSK1_r1_preprocessed_SJ.out.tab
7.82 MB
featureCounts
results
Directory
GSK1_r1_preprocessed_fpkm.tab.gz
376.96 kB
featureCounts_rc.txt.summary
343 B
GSK1_r1_preprocessed_tpm.tab.gz
376.59 kB
GSK1_r1_preprocessed_rc.tab.gz
249.63 kB
GSK1_r1_preprocessed_cpm.tab.gz
285.26 kB
GSK1_r1_preprocessed_expressions.txt.gz
1.06 MB
GSK1_r1_preprocessed_featureCounts_rc.txt.gz
4.44 MB
STAR
GSK1_r1_preprocessed_downsampled.bam
1.58 MB
GSK1_r1_preprocessed_downsampled.bam.bai
264 B
GSK1_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.49 MB
GSK1_r1_preprocessed_downsampled_SJ.out.tab
104 B
GSK1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
52.48 MB
STAR
GSK1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.66 MB
GSK1_r1_preprocessed_downsampled.bam.bai
600 B
GSK1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.66 MB
GSK1_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK1_r1_preprocessed_downsampled.bam
293.22 kB
GSK1_r1_preprocessed_downsampled_SJ.out.tab
7.06 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB

deep_GSK3

FASTQ file (paired-end)
GSK3_r1.fastq.gz
2.83 GB
fastqc
Directory
stderr.txt
1.59 kB
GSK3_r2.fastq.gz
2.95 GB
GSK3_r1_fastqc.zip
519.89 kB
GSK3_r2_fastqc.zip
523.35 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (paired-end)
GSK3_r1_preprocessed.fastq.gz
2.13 GB
fastqc
Directory
GSK3_r1_statistics.txt.gz
897 B
GSK3_r2_preprocessed.fastq.gz
2.12 GB
Subsample FASTQ (paired-end)
GSK3_r1_preprocessed_downsampled.fastq.gz
55.28 MB
GSK3_r2_preprocessed_downsampled.fastq.gz
55.15 MB
fastqc
Directory
STAR
GSK3_r1_preprocessed_unmapped.out.mate1.fastq.gz
12.47 MB
GSK3_r1_preprocessed.bam
3.49 GB
GSK3_r1_preprocessed.bam.bai
3.32 MB
GSK3_r1_preprocessed_stats.txt
1.82 kB
GSK3_r2_preprocessed_unmapped.out.mate2.fastq.gz
12.18 MB
GSK3_r1_preprocessed_SJ.out.tab
8.41 MB
STAR
GSK3_r1_preprocessed_downsampled.bam.bai
336 B
GSK3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.66 MB
GSK3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.54 MB
GSK3_r1_preprocessed_downsampled.bam
1.69 MB
GSK3_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK3_r1_preprocessed_downsampled_SJ.out.tab
155 B
STAR
GSK3_r1_preprocessed_downsampled.bam.bai
816 B
GSK3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
54.82 MB
GSK3_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.93 MB
GSK3_r1_preprocessed_downsampled.bam
288.10 kB
GSK3_r1_preprocessed_downsampled_SJ.out.tab
7.00 kB
featureCounts
results
Directory
featureCounts_rc.txt.summary
344 B
GSK3_r1_preprocessed_rc.tab.gz
250.84 kB
GSK3_r1_preprocessed_featureCounts_rc.txt.gz
4.44 MB
GSK3_r1_preprocessed_tpm.tab.gz
382.69 kB
GSK3_r1_preprocessed_expressions.txt.gz
1.08 MB
GSK3_r1_preprocessed_cpm.tab.gz
289.40 kB
GSK3_r1_preprocessed_fpkm.tab.gz
383.36 kB

deep_GSK2

FASTQ file (paired-end)
fastqc
Directory
GSK2_r1.fastq.gz
2.45 GB
GSK2_r2.fastq.gz
2.57 GB
stderr.txt
1.59 kB
GSK2_r1_fastqc.zip
526.29 kB
GSK2_r2_fastqc.zip
524.67 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (paired-end)
fastqc
Directory
GSK2_r1_preprocessed.fastq.gz
1.77 GB
GSK2_r2_preprocessed.fastq.gz
1.77 GB
GSK2_r1_statistics.txt.gz
850 B
Subsample FASTQ (paired-end)
fastqc
Directory
GSK2_r1_preprocessed_downsampled.fastq.gz
53.23 MB
GSK2_r2_preprocessed_downsampled.fastq.gz
53.30 MB
STAR
GSK2_r1_preprocessed.bam
2.94 GB
GSK2_r1_preprocessed_unmapped.out.mate1.fastq.gz
27.88 MB
GSK2_r1_preprocessed_stats.txt
1.82 kB
GSK2_r1_preprocessed.bam.bai
3.23 MB
GSK2_r2_preprocessed_unmapped.out.mate2.fastq.gz
26.31 MB
GSK2_r1_preprocessed_SJ.out.tab
7.49 MB
STAR
GSK2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
51.97 MB
GSK2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
51.92 MB
GSK2_r1_preprocessed_downsampled.bam
1.44 MB
GSK2_r1_preprocessed_downsampled.bam.bai
336 B
GSK2_r1_preprocessed_downsampled_SJ.out.tab
155 B
GSK2_r1_preprocessed_downsampled_stats.txt
1.78 kB
STAR
GSK2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
52.99 MB
GSK2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
52.93 MB
GSK2_r1_preprocessed_downsampled.bam
336.12 kB
GSK2_r1_preprocessed_downsampled.bam.bai
792 B
GSK2_r1_preprocessed_downsampled_stats.txt
1.78 kB
GSK2_r1_preprocessed_downsampled_SJ.out.tab
7.64 kB
featureCounts
featureCounts_rc.txt.summary
343 B
GSK2_r1_preprocessed_fpkm.tab.gz
377.53 kB
GSK2_r1_preprocessed_featureCounts_rc.txt.gz
4.44 MB
GSK2_r1_preprocessed_tpm.tab.gz
376.65 kB
results
Directory
GSK2_r1_preprocessed_cpm.tab.gz
284.45 kB
GSK2_r1_preprocessed_expressions.txt.gz
1.06 MB
GSK2_r1_preprocessed_rc.tab.gz
249.19 kB

deep_LLY1

FASTQ file (paired-end)
fastqc
Directory
LLY1_r1_fastqc.zip
516.15 kB
LLY1_r2.fastq.gz
2.76 GB
LLY1_r1.fastq.gz
2.61 GB
stderr.txt
1.59 kB
LLY1_r2_fastqc.zip
524.13 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
BBDuk (paired-end)
LLY1_r1_preprocessed.fastq.gz
1.97 GB
fastqc
Directory
LLY1_r2_preprocessed.fastq.gz
1.97 GB
LLY1_r1_statistics.txt.gz
857 B
Subsample FASTQ (paired-end)
fastqc
Directory
LLY1_r1_preprocessed_downsampled.fastq.gz
55.30 MB
LLY1_r2_preprocessed_downsampled.fastq.gz
55.25 MB
STAR
LLY1_r2_preprocessed_unmapped.out.mate2.fastq.gz
11.01 MB
LLY1_r1_preprocessed.bam.bai
3.32 MB
LLY1_r1_preprocessed_stats.txt
1.82 kB
LLY1_r1_preprocessed_SJ.out.tab
8.11 MB
LLY1_r1_preprocessed_unmapped.out.mate1.fastq.gz
11.34 MB
LLY1_r1_preprocessed.bam
3.22 GB
STAR
LLY1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
53.89 MB
LLY1_r1_preprocessed_downsampled.bam.bai
264 B
LLY1_r1_preprocessed_downsampled.bam
1.48 MB
LLY1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
53.84 MB
LLY1_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY1_r1_preprocessed_downsampled_SJ.out.tab
53 B
STAR
LLY1_r1_preprocessed_downsampled.bam.bai
856 B
LLY1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.97 MB
LLY1_r1_preprocessed_downsampled_SJ.out.tab
7.53 kB
LLY1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
54.93 MB
LLY1_r1_preprocessed_downsampled.bam
362.55 kB
LLY1_r1_preprocessed_downsampled_stats.txt
1.78 kB
featureCounts
featureCounts_rc.txt.summary
343 B
LLY1_r1_preprocessed_featureCounts_rc.txt.gz
4.44 MB
LLY1_r1_preprocessed_rc.tab.gz
250.11 kB
LLY1_r1_preprocessed_fpkm.tab.gz
380.03 kB
results
Directory
LLY1_r1_preprocessed_tpm.tab.gz
379.18 kB
LLY1_r1_preprocessed_cpm.tab.gz
284.84 kB
LLY1_r1_preprocessed_expressions.txt.gz
1.07 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB

deep_LLY3

FASTQ file (paired-end)
fastqc
Directory
LLY3_r1.fastq.gz
2.87 GB
stderr.txt
1.59 kB
LLY3_r1_fastqc.zip
516.92 kB
LLY3_r2.fastq.gz
2.96 GB
LLY3_r2_fastqc.zip
517.35 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (paired-end)
fastqc
Directory
LLY3_r1_statistics.txt.gz
956 B
LLY3_r2_preprocessed.fastq.gz
2.17 GB
LLY3_r1_preprocessed.fastq.gz
2.17 GB
Subsample FASTQ (paired-end)
fastqc
Directory
LLY3_r2_preprocessed_downsampled.fastq.gz
55.73 MB
LLY3_r1_preprocessed_downsampled.fastq.gz
55.85 MB
STAR
LLY3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.54 MB
LLY3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.42 MB
LLY3_r1_preprocessed_downsampled.bam.bai
640 B
LLY3_r1_preprocessed_downsampled.bam
264.69 kB
LLY3_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY3_r1_preprocessed_downsampled_SJ.out.tab
6.65 kB
STAR
LLY3_r1_preprocessed_downsampled.bam.bai
336 B
LLY3_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
54.02 MB
LLY3_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
54.13 MB
LLY3_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY3_r1_preprocessed_downsampled.bam
1.83 MB
LLY3_r1_preprocessed_downsampled_SJ.out.tab
51 B
STAR
LLY3_r2_preprocessed_unmapped.out.mate2.fastq.gz
13.21 MB
LLY3_r1_preprocessed_stats.txt
1.82 kB
LLY3_r1_preprocessed.bam.bai
3.30 MB
LLY3_r1_preprocessed_unmapped.out.mate1.fastq.gz
13.53 MB
LLY3_r1_preprocessed.bam
3.57 GB
LLY3_r1_preprocessed_SJ.out.tab
8.78 MB
featureCounts
results
Directory
featureCounts_rc.txt.summary
344 B
LLY3_r1_preprocessed_rc.tab.gz
250.81 kB
LLY3_r1_preprocessed_tpm.tab.gz
379.86 kB
LLY3_r1_preprocessed_featureCounts_rc.txt.gz
4.44 MB
LLY3_r1_preprocessed_fpkm.tab.gz
380.88 kB
LLY3_r1_preprocessed_cpm.tab.gz
289.95 kB
LLY3_r1_preprocessed_expressions.txt.gz
1.07 MB

deep_LLY2

FASTQ file (paired-end)
LLY2_r1.fastq.gz
2.56 GB
LLY2_r2.fastq.gz
2.71 GB
fastqc
Directory
stderr.txt
1.59 kB
LLY2_r1_fastqc.zip
512.47 kB
LLY2_r2_fastqc.zip
520.73 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
BBDuk (paired-end)
LLY2_r2_preprocessed.fastq.gz
1.92 GB
LLY2_r1_preprocessed.fastq.gz
1.92 GB
LLY2_r1_statistics.txt.gz
826 B
fastqc
Directory
Subsample FASTQ (paired-end)
fastqc
Directory
LLY2_r2_preprocessed_downsampled.fastq.gz
56.43 MB
LLY2_r1_preprocessed_downsampled.fastq.gz
56.53 MB
STAR
LLY2_r1_preprocessed_unmapped.out.mate1.fastq.gz
28.76 MB
LLY2_r2_preprocessed_unmapped.out.mate2.fastq.gz
27.36 MB
LLY2_r1_preprocessed.bam.bai
3.23 MB
LLY2_r1_preprocessed_SJ.out.tab
8.19 MB
LLY2_r1_preprocessed_stats.txt
1.82 kB
LLY2_r1_preprocessed.bam
3.08 GB
STAR
LLY2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.02 MB
LLY2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.12 MB
LLY2_r1_preprocessed_downsampled.bam.bai
336 B
LLY2_r1_preprocessed_downsampled.bam
1.48 MB
LLY2_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY2_r1_preprocessed_downsampled_SJ.out.tab
53 B
STAR
LLY2_r1_preprocessed_downsampled.bam
288.52 kB
LLY2_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.22 MB
LLY2_r1_preprocessed_downsampled_stats.txt
1.78 kB
LLY2_r1_preprocessed_downsampled.bam.bai
744 B
LLY2_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.12 MB
LLY2_r1_preprocessed_downsampled_SJ.out.tab
6.36 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
featureCounts
LLY2_r1_preprocessed_featureCounts_rc.txt.gz
4.44 MB
featureCounts_rc.txt.summary
343 B
results
Directory
LLY2_r1_preprocessed_fpkm.tab.gz
380.24 kB
LLY2_r1_preprocessed_tpm.tab.gz
379.31 kB
LLY2_r1_preprocessed_cpm.tab.gz
286.30 kB
LLY2_r1_preprocessed_expressions.txt.gz
1.07 MB
LLY2_r1_preprocessed_rc.tab.gz
249.86 kB

DMSO_2

STAR
10_S4_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
136.18 kB
10_S4_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
126.34 kB
10_S4_R1_001_preprocessed.bam.bai
1.74 MB
10_S4_R1_001_preprocessed_SJ.out.tab
1.73 MB
10_S4_R1_001_preprocessed.bam
78.03 MB
10_S4_R1_001_preprocessed.bw
2.15 MB
10_S4_R1_001_preprocessed_stats.txt
1.80 kB
featureCounts
featureCounts_rc.txt.summary
340 B
10_S4_R1_001_preprocessed_featureCounts_rc.txt.gz
4.40 MB
10_S4_R1_001_preprocessed_rc.tab.gz
218.96 kB
10_S4_R1_001_preprocessed_expressions.txt.gz
711.82 kB
10_S4_R1_001_preprocessed_tpm.tab.gz
273.61 kB
results
Directory
10_S4_R1_001_preprocessed_fpkm.tab.gz
273.03 kB
BBDuk (paired-end)
fastqc
Directory
10_S4_R1_001_statistics.txt.gz
513 B
10_S4_R2_001_preprocessed.fastq.gz
26.50 MB
10_S4_R1_001_preprocessed.fastq.gz
26.06 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.18 MB
FASTQ file (paired-end)
10_S4_R1_001.fastq.gz
31.64 MB
10_S4_R2_001.fastq.gz
32.90 MB
fastqc
Directory
stderr.txt
1.67 kB
10_S4_R1_001_fastqc.zip
358.33 kB
10_S4_R2_001_fastqc.zip
355.46 kB

GSK_3

STAR
14_S8_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
173.24 kB
14_S8_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
164.35 kB
14_S8_R1_001_preprocessed.bam
74.27 MB
14_S8_R1_001_preprocessed_stats.txt
1.80 kB
14_S8_R1_001_preprocessed.bam.bai
1.79 MB
14_S8_R1_001_preprocessed_SJ.out.tab
2.02 MB
14_S8_R1_001_preprocessed.bw
2.54 MB
BBDuk (paired-end)
fastqc
Directory
14_S8_R1_001_preprocessed.fastq.gz
27.96 MB
14_S8_R2_001_preprocessed.fastq.gz
28.53 MB
14_S8_R1_001_statistics.txt.gz
470 B
FASTQ file (paired-end)
fastqc
Directory
14_S8_R2_001.fastq.gz
35.34 MB
14_S8_R1_001.fastq.gz
33.80 MB
stderr.txt
1.67 kB
14_S8_R1_001_fastqc.zip
350.24 kB
14_S8_R2_001_fastqc.zip
344.81 kB
featureCounts
featureCounts_rc.txt.summary
340 B
14_S8_R1_001_preprocessed_featureCounts_rc.txt.gz
4.40 MB
14_S8_R1_001_preprocessed_rc.tab.gz
220.09 kB
14_S8_R1_001_preprocessed_fpkm.tab.gz
282.85 kB
14_S8_R1_001_preprocessed_tpm.tab.gz
283.45 kB
results
Directory
14_S8_R1_001_preprocessed_expressions.txt.gz
732.88 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.18 MB

GSK_2

FASTQ file (paired-end)
11_S5_R1_001.fastq.gz
33.91 MB
11_S5_R1_001_fastqc.zip
360.07 kB
fastqc
Directory
11_S5_R2_001.fastq.gz
35.21 MB
stderr.txt
1.67 kB
11_S5_R2_001_fastqc.zip
354.68 kB
STAR
11_S5_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
159.19 kB
11_S5_R1_001_preprocessed.bam
72.98 MB
11_S5_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
148.93 kB
11_S5_R1_001_preprocessed.bam.bai
1.74 MB
11_S5_R1_001_preprocessed_SJ.out.tab
1.78 MB
11_S5_R1_001_preprocessed_stats.txt
1.80 kB
11_S5_R1_001_preprocessed.bw
2.43 MB
featureCounts
11_S5_R1_001_preprocessed_featureCounts_rc.txt.gz
4.40 MB
11_S5_R1_001_preprocessed_rc.tab.gz
219.60 kB
featureCounts_rc.txt.summary
340 B
results
Directory
11_S5_R1_001_preprocessed_tpm.tab.gz
276.12 kB
11_S5_R1_001_preprocessed_expressions.txt.gz
717.60 kB
11_S5_R1_001_preprocessed_fpkm.tab.gz
275.50 kB
BBDuk (paired-end)
fastqc
Directory
11_S5_R2_001_preprocessed.fastq.gz
28.58 MB
11_S5_R1_001_preprocessed.fastq.gz
28.10 MB
11_S5_R1_001_statistics.txt.gz
536 B
MultiQC
multiqc_report.html
1.18 MB
multiqc_data
Directory

DMSO_3

STAR
13_S7_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
143.98 kB
13_S7_R1_001_preprocessed.bam
69.89 MB
13_S7_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
154.26 kB
13_S7_R1_001_preprocessed_stats.txt
1.80 kB
13_S7_R1_001_preprocessed.bw
2.28 MB
13_S7_R1_001_preprocessed_SJ.out.tab
1.89 MB
13_S7_R1_001_preprocessed.bam.bai
1.77 MB
FASTQ file (paired-end)
fastqc
Directory
13_S7_R2_001.fastq.gz
32.04 MB
13_S7_R1_001.fastq.gz
30.60 MB
stderr.txt
1.67 kB
13_S7_R1_001_fastqc.zip
357.29 kB
13_S7_R2_001_fastqc.zip
348.25 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.18 MB
BBDuk (paired-end)
fastqc
Directory
13_S7_R1_001_preprocessed.fastq.gz
25.31 MB
13_S7_R1_001_statistics.txt.gz
532 B
13_S7_R2_001_preprocessed.fastq.gz
25.86 MB
featureCounts
13_S7_R1_001_preprocessed_featureCounts_rc.txt.gz
4.40 MB
13_S7_R1_001_preprocessed_rc.tab.gz
219.46 kB
featureCounts_rc.txt.summary
341 B
13_S7_R1_001_preprocessed_fpkm.tab.gz
278.09 kB
13_S7_R1_001_preprocessed_tpm.tab.gz
278.60 kB
results
Directory
13_S7_R1_001_preprocessed_expressions.txt.gz
722.64 kB

Lilly_2

MultiQC
multiqc_data
Directory
multiqc_report.html
1.18 MB
STAR
12_S6_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
152.84 kB
12_S6_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
139.21 kB
12_S6_R1_001_preprocessed.bam.bai
1.75 MB
12_S6_R1_001_preprocessed_stats.txt
1.80 kB
12_S6_R1_001_preprocessed_SJ.out.tab
1.60 MB
12_S6_R1_001_preprocessed.bam
63.45 MB
12_S6_R1_001_preprocessed.bw
2.17 MB
BBDuk (paired-end)
fastqc
Directory
12_S6_R1_001_statistics.txt.gz
516 B
12_S6_R1_001_preprocessed.fastq.gz
23.73 MB
12_S6_R2_001_preprocessed.fastq.gz
24.01 MB
FASTQ file (paired-end)
12_S6_R2_001.fastq.gz
29.32 MB
12_S6_R1_001.fastq.gz
28.54 MB
stderr.txt
1.67 kB
fastqc
Directory
12_S6_R1_001_fastqc.zip
357.04 kB
12_S6_R2_001_fastqc.zip
352.26 kB
featureCounts
12_S6_R1_001_preprocessed_featureCounts_rc.txt.gz
4.40 MB
featureCounts_rc.txt.summary
339 B
12_S6_R1_001_preprocessed_rc.tab.gz
218.40 kB
12_S6_R1_001_preprocessed_fpkm.tab.gz
271.96 kB
12_S6_R1_001_preprocessed_tpm.tab.gz
272.28 kB
results
Directory
12_S6_R1_001_preprocessed_expressions.txt.gz
709.36 kB

Lilly_3

featureCounts
featureCounts_rc.txt.summary
341 B
15_S9_R1_001_preprocessed_fpkm.tab.gz
288.35 kB
15_S9_R1_001_preprocessed_featureCounts_rc.txt.gz
4.40 MB
15_S9_R1_001_preprocessed_rc.tab.gz
221.79 kB
15_S9_R1_001_preprocessed_tpm.tab.gz
288.92 kB
15_S9_R1_001_preprocessed_expressions.txt.gz
745.28 kB
results
Directory
FASTQ file (paired-end)
15_S9_R2_001.fastq.gz
51.41 MB
fastqc
Directory
15_S9_R1_001.fastq.gz
45.20 MB
stderr.txt
1.67 kB
15_S9_R1_001_fastqc.zip
354.26 kB
15_S9_R2_001_fastqc.zip
359.69 kB
STAR
15_S9_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
364.71 kB
15_S9_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
325.41 kB
15_S9_R1_001_preprocessed.bam.bai
1.80 MB
15_S9_R1_001_preprocessed.bam
102.45 MB
15_S9_R1_001_preprocessed_SJ.out.tab
2.31 MB
15_S9_R1_001_preprocessed_stats.txt
1.80 kB
15_S9_R1_001_preprocessed.bw
3.21 MB
BBDuk (paired-end)
fastqc
Directory
15_S9_R2_001_preprocessed.fastq.gz
38.70 MB
15_S9_R1_001_preprocessed.fastq.gz
36.70 MB
15_S9_R1_001_statistics.txt.gz
504 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.18 MB

DMSO_1

FASTQ file (paired-end)
fastqc
Directory
1_S1_R2_001.fastq.gz
40.40 MB
1_S1_R1_001.fastq.gz
38.71 MB
1_S1_R1_001_fastqc.zip
353.96 kB
stderr.txt
1.63 kB
1_S1_R2_001_fastqc.zip
350.36 kB
STAR
1_S1_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
403.86 kB
1_S1_R1_001_preprocessed.bam.bai
1.72 MB
1_S1_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
340.04 kB
1_S1_R1_001_preprocessed_SJ.out.tab
2.03 MB
1_S1_R1_001_preprocessed.bam
78.44 MB
1_S1_R1_001_preprocessed_stats.txt
1.80 kB
1_S1_R1_001_preprocessed.bw
2.68 MB
featureCounts
featureCounts_rc.txt.summary
339 B
1_S1_R1_001_preprocessed_fpkm.tab.gz
274.13 kB
1_S1_R1_001_preprocessed_featureCounts_rc.txt.gz
4.40 MB
1_S1_R1_001_preprocessed_expressions.txt.gz
714.37 kB
1_S1_R1_001_preprocessed_rc.tab.gz
219.72 kB
1_S1_R1_001_preprocessed_tpm.tab.gz
274.41 kB
results
Directory
BBDuk (paired-end)
fastqc
Directory
1_S1_R1_001_preprocessed.fastq.gz
31.90 MB
1_S1_R2_001_preprocessed.fastq.gz
32.44 MB
1_S1_R1_001_statistics.txt.gz
540 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.18 MB

GSK_1

STAR
2_S2_R1_001_preprocessed.bam.bai
1.75 MB
2_S2_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
155.85 kB
2_S2_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
173.11 kB
2_S2_R1_001_preprocessed.bam
65.20 MB
2_S2_R1_001_preprocessed_stats.txt
1.80 kB
2_S2_R1_001_preprocessed_SJ.out.tab
1.64 MB
2_S2_R1_001_preprocessed.bw
2.24 MB
BBDuk (paired-end)
2_S2_R1_001_preprocessed.fastq.gz
25.79 MB
fastqc
Directory
2_S2_R1_001_statistics.txt.gz
556 B
2_S2_R2_001_preprocessed.fastq.gz
26.44 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.18 MB
FASTQ file (paired-end)
2_S2_R1_001.fastq.gz
31.08 MB
fastqc
Directory
2_S2_R2_001.fastq.gz
32.71 MB
stderr.txt
1.63 kB
2_S2_R1_001_fastqc.zip
361.30 kB
2_S2_R2_001_fastqc.zip
357.24 kB
featureCounts
2_S2_R1_001_preprocessed_featureCounts_rc.txt.gz
4.40 MB
2_S2_R1_001_preprocessed_rc.tab.gz
218.73 kB
featureCounts_rc.txt.summary
338 B
2_S2_R1_001_preprocessed_fpkm.tab.gz
269.55 kB
2_S2_R1_001_preprocessed_tpm.tab.gz
270.02 kB
results
Directory
2_S2_R1_001_preprocessed_expressions.txt.gz
704.66 kB

Lilly_1

featureCounts
featureCounts_rc.txt.summary
338 B
3_S3_R1_001_preprocessed_rc.tab.gz
218.66 kB
3_S3_R1_001_preprocessed_fpkm.tab.gz
270.34 kB
3_S3_R1_001_preprocessed_featureCounts_rc.txt.gz
4.40 MB
3_S3_R1_001_preprocessed_tpm.tab.gz
271.05 kB
3_S3_R1_001_preprocessed_expressions.txt.gz
705.79 kB
results
Directory
BBDuk (paired-end)
fastqc
Directory
3_S3_R1_001_statistics.txt.gz
521 B
3_S3_R1_001_preprocessed.fastq.gz
26.70 MB
3_S3_R2_001_preprocessed.fastq.gz
27.13 MB
FASTQ file (paired-end)
fastqc
Directory
3_S3_R2_001.fastq.gz
33.07 MB
3_S3_R1_001.fastq.gz
32.01 MB
3_S3_R1_001_fastqc.zip
353.12 kB
3_S3_R2_001_fastqc.zip
349.13 kB
stderr.txt
1.63 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.18 MB
STAR
3_S3_R1_001_preprocessed.bam
67.37 MB
3_S3_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
151.47 kB
3_S3_R1_001_preprocessed.bam.bai
1.77 MB
3_S3_R2_001_preprocessed_unmapped.out.mate2.fastq.gz
142.26 kB
3_S3_R1_001_preprocessed_stats.txt
1.80 kB
3_S3_R1_001_preprocessed_SJ.out.tab
1.71 MB
3_S3_R1_001_preprocessed.bw
2.43 MB

No Sample

FASTQ file (paired-end)
fastqc
Directory
LLY1_r1_fastqc.zip
516.15 kB
LLY1_r2.fastq.gz
2.76 GB
LLY1_r1.fastq.gz
2.61 GB
stderr.txt
1.59 kB
LLY1_r2_fastqc.zip
524.13 kB
FASTQ file (paired-end)
fastqc
Directory
stderr.txt
1.59 kB
GSK1_r1.fastq.gz
2.65 GB
GSK1_r2.fastq.gz
2.76 GB
GSK1_r2_fastqc.zip
523.16 kB
GSK1_r1_fastqc.zip
523.79 kB
FASTQ file (paired-end)
fastqc
Directory
stderr.txt
1.63 kB
DMSO1_r1.fastq.gz
3.08 GB
DMSO1_r2.fastq.gz
3.26 GB
DMSO1_r2_fastqc.zip
516.80 kB
DMSO1_r1_fastqc.zip
515.17 kB
FASTQ file (paired-end)
DMSO3_r1_fastqc.zip
516.69 kB
fastqc
Directory
DMSO3_r2.fastq.gz
3.40 GB
DMSO3_r1.fastq.gz
3.19 GB
DMSO3_r2_fastqc.zip
523.51 kB
stderr.txt
1.63 kB
FASTQ file (paired-end)
GSK3_r1.fastq.gz
2.83 GB
fastqc
Directory
stderr.txt
1.59 kB
GSK3_r2.fastq.gz
2.95 GB
GSK3_r1_fastqc.zip
519.89 kB
GSK3_r2_fastqc.zip
523.35 kB
FASTQ file (paired-end)
fastqc
Directory
GSK2_r1.fastq.gz
2.45 GB
GSK2_r2.fastq.gz
2.57 GB
stderr.txt
1.59 kB
GSK2_r1_fastqc.zip
526.29 kB
GSK2_r2_fastqc.zip
524.67 kB
FASTQ file (paired-end)
fastqc
Directory
LLY3_r1.fastq.gz
2.87 GB
stderr.txt
1.59 kB
LLY3_r1_fastqc.zip
516.92 kB
LLY3_r2.fastq.gz
2.96 GB
LLY3_r2_fastqc.zip
517.35 kB
FASTQ file (paired-end)
LLY2_r1.fastq.gz
2.56 GB
LLY2_r2.fastq.gz
2.71 GB
fastqc
Directory
stderr.txt
1.59 kB
LLY2_r1_fastqc.zip
512.47 kB
LLY2_r2_fastqc.zip
520.73 kB
Samtools idxstats
idxstat_report.txt
5.92 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
BBDuk (paired-end)
DMSO1_r2_preprocessed.fastq.gz
2.35 GB
DMSO1_r1_preprocessed.fastq.gz
2.35 GB
DMSO1_r1_statistics.txt.gz
886 B
fastqc
Directory
Subsample FASTQ (paired-end)
fastqc
Directory
DMSO1_r2_preprocessed_downsampled.fastq.gz
57.21 MB
DMSO1_r1_preprocessed_downsampled.fastq.gz
57.21 MB
STAR
DMSO1_r1_preprocessed_downsampled.bam.bai
336 B
DMSO1_r1_preprocessed_downsampled.bam
1.55 MB
DMSO1_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO1_r1_preprocessed_downsampled_SJ.out.tab
154 B
DMSO1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
55.72 MB
DMSO1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
55.73 MB
STAR
DMSO1_r2_preprocessed_unmapped.out.mate2.fastq.gz
38.09 MB
DMSO1_r1_preprocessed.bam.bai
3.37 MB
DMSO1_r1_preprocessed_SJ.out.tab
9.04 MB
DMSO1_r1_preprocessed.bam
3.62 GB
DMSO1_r1_preprocessed_unmapped.out.mate1.fastq.gz
40.39 MB
DMSO1_r1_preprocessed_stats.txt
1.82 kB
STAR
DMSO1_r1_preprocessed_downsampled.bam
271.36 kB
DMSO1_r2_preprocessed_downsampled_unmapped.out.mate2.fastq.gz
56.92 MB
DMSO1_r1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz
56.91 MB
DMSO1_r1_preprocessed_downsampled_stats.txt
1.78 kB
DMSO1_r1_preprocessed_downsampled_SJ.out.tab
6.20 kB
DMSO1_r1_preprocessed_downsampled.bam.bai
584 B
featureCounts
DMSO1_r1_preprocessed_rc.tab.gz
251.29 kB
DMSO1_r1_preprocessed_featureCounts_rc.txt.gz
4.44 MB
featureCounts_rc.txt.summary
344 B
results
Directory
DMSO1_r1_preprocessed_fpkm.tab.gz
384.92 kB
DMSO1_r1_preprocessed_tpm.tab.gz
384.21 kB
DMSO1_r1_preprocessed_cpm.tab.gz
291.77 kB
DMSO1_r1_preprocessed_expressions.txt.gz
1.08 MB
Samtools idxstats
idxstat_report.txt
5.91 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.23 MB
FASTQ file (paired-end)
DMSO2_r1.fastq.gz
2.34 GB
DMSO2_r2.fastq.gz
2.51 GB
fastqc
Directory
stderr.txt
1.63 kB
DMSO2_r2_fastqc.zip
529.71 kB
DMSO2_r1_fastqc.zip
517.17 kB
BBDuk (paired-end)
DMSO2_r1_preprocessed.fastq.gz
1.72 GB
DMSO2_r2_preprocessed.fastq.gz
1.72 GB
fastqc
Directory
DMSO2_r1_statistics.txt.gz
788 B
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Directory
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Directory
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Directory
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Subsample FASTQ (paired-end)
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Directory
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STAR
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Subsample FASTQ (paired-end)
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Directory
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STAR
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Directory
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STAR
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STAR
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STAR
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STAR
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MultiQC
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MultiQC
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Directory
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STAR
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DESeq2
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FASTQ file (paired-end)
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fastqc
Directory
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Directory
STAR
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BBDuk (paired-end)
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14_S8_R2_001_preprocessed.fastq.gz
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BBDuk (paired-end)
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12_S6_R1_001_preprocessed.fastq.gz
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12_S6_R2_001_preprocessed.fastq.gz
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STAR
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13_S7_R1_001.fastq.gz
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13_S7_R1_001_fastqc.zip
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11_S5_R1_001_fastqc.zip
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fastqc
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stderr.txt
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14_S8_R1_001.fastq.gz
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14_S8_R1_001_fastqc.zip
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14_S8_R1_001_preprocessed_featureCounts_rc.txt.gz
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Directory
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BBDuk (paired-end)
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STAR
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BBDuk (paired-end)
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3_S3_R1_001_preprocessed.fastq.gz
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3_S3_R2_001_preprocessed.fastq.gz
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BBDuk (paired-end)
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2_S2_R2_001_preprocessed.fastq.gz
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DESeq2
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Directory
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BBDuk (paired-end)
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Directory
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11_S5_R1_001_preprocessed.fastq.gz
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3_S3_R1_001.fastq.gz
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3_S3_R1_001_fastqc.zip
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1_S1_R1_001_preprocessed_fpkm.tab.gz
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MultiQC
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Directory
multiqc_report.html
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BBDuk (paired-end)
fastqc
Directory
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15_S9_R1_001_preprocessed.fastq.gz
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BBDuk (paired-end)
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BBDuk (paired-end)
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Directory
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FASTQ file (paired-end)
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10_S4_R2_001.fastq.gz
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fastqc
Directory
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10_S4_R1_001_fastqc.zip
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featureCounts
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results
Directory
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MultiQC
multiqc_data
Directory
multiqc_report.html
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MultiQC
multiqc_data
Directory
multiqc_report.html
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MultiQC
multiqc_data
Directory
multiqc_report.html
1.18 MB
STAR
3_S3_R1_001_preprocessed.bam
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3_S3_R1_001_preprocessed_unmapped.out.mate1.fastq.gz
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3_S3_R1_001_preprocessed_stats.txt
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3_S3_R1_001_preprocessed_SJ.out.tab
1.71 MB
3_S3_R1_001_preprocessed.bw
2.43 MB