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Folder iconSm iCLIP in SMA mouse

Charlotte Capitanchik
Jan. 26, 2019
Sm iCLIP in SMA mice. These are knockouts of mouse Smn and knockin of human SMN2, which partially rescues Smn loss. For preparing the Sm iCLIP libraries brain and spinal cord were used from wildtype (Smn+/+;SMN2), heterozygotes (Smn+/-;SMN2) and knockout (Smn-/-;SMN2) mice, each as triplicate.

Smb_brain_HET_Mm_2

FASTQ file (single-end)
stderr.txt
583 B
smb-brain-het-mm-2.fastq.gz
346.17 kB
fastqc
Directory
smb-brain-het-mm-2_fastqc.zip
414.01 kB
iCount summary
smb-brain-het-mm-2_trimmed_single_summary_type.tsv
405 B
smb-brain-het-mm-2_trimmed_single_summary_gene.tsv
293.90 kB
smb-brain-het-mm-2_trimmed_single_summary_subtype.tsv
765 B
iCount RNA-maps
results.tar.gz
321.75 kB
Paraclu
peaks.bed.gz
35 B
Cutadapt (single-end)
report.txt
684 B
fastqc
Directory
smb-brain-het-mm-2_trimmed.fastq.gz
350.60 kB
smb-brain-het-mm-2_trimmed_fastqc.zip
413.23 kB
STAR
smb-brain-het-mm-2_trimmed.bam.bai
1.50 MB
smb-brain-het-mm-2_trimmed.bam
781.89 kB
smb-brain-het-mm-2_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-2_trimmed_SJ.out.tab
1.16 kB
smb-brain-het-mm-2_trimmed_unmapped.out.mate1.fastq.gz
36.65 kB
smb-brain-het-mm-2_trimmed.bw
4.40 kB
iCount xlsites
smb-brain-het-mm-2_trimmed_single.bed.gz
55.16 kB
smb-brain-het-mm-2_trimmed_singleAndMulti.bed.gz
96.21 kB
smb-brain-het-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-2_trimmed_reads_single.bed.gz
56.38 kB
smb-brain-het-mm-2_trimmed_single.bedgraph
199.56 kB

Smb_brain_HET_Mm_1

STAR
smb-brain-het-mm-1_trimmed.bw
13.06 kB
smb-brain-het-mm-1_trimmed_stats.txt
1.81 kB
smb-brain-het-mm-1_trimmed.bam
177.52 MB
smb-brain-het-mm-1_trimmed.bam.bai
3.56 MB
smb-brain-het-mm-1_trimmed_SJ.out.tab
520.08 kB
smb-brain-het-mm-1_trimmed_unmapped.out.mate1.fastq.gz
22.44 MB
iCount xlsites
smb-brain-het-mm-1_trimmed_skipped.bam
2.12 kB
smb-brain-het-mm-1_trimmed_singleAndMulti.bed.gz
10.89 MB
smb-brain-het-mm-1_trimmed_single.bedgraph
37.93 MB
smb-brain-het-mm-1_trimmed_single.bed.gz
8.07 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
975 B
smb-brain-het-mm-1_fastqc.zip
384.29 kB
smb-brain-het-mm-1.fastq.gz
103.07 MB
iCount summary
smb-brain-het-mm-1_trimmed_single_summary_type.tsv
272 B
smb-brain-het-mm-1_trimmed_single_summary_gene.tsv
1.12 MB
smb-brain-het-mm-1_trimmed_single_summary_subtype.tsv
656 B
Cutadapt (single-end)
report.txt
685 B
fastqc
Directory
smb-brain-het-mm-1_trimmed.fastq.gz
104.14 MB
smb-brain-het-mm-1_trimmed_fastqc.zip
393.33 kB
iCount RNA-maps
results.tar.gz
2.83 MB

Smb_brain_KO_Mm_1

Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
308.36 kB
Cutadapt (single-end)
fastqc
Directory
smb-brain-ko-mm-1_trimmed.fastq.gz
181.58 kB
report.txt
683 B
smb-brain-ko-mm-1_trimmed_fastqc.zip
400.47 kB
FASTQ file (single-end)
smb-brain-ko-mm-1.fastq.gz
179.24 kB
fastqc
Directory
stderr.txt
284 B
smb-brain-ko-mm-1_fastqc.zip
406.44 kB
iCount summary
smb-brain-ko-mm-1_trimmed_single_summary_type.tsv
403 B
smb-brain-ko-mm-1_trimmed_single_summary_gene.tsv
199.39 kB
smb-brain-ko-mm-1_trimmed_single_summary_subtype.tsv
632 B
STAR
smb-brain-ko-mm-1_trimmed_unmapped.out.mate1.fastq.gz
20.02 kB
smb-brain-ko-mm-1_trimmed.bam.bai
1.39 MB
smb-brain-ko-mm-1_trimmed.bam
406.82 kB
smb-brain-ko-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-ko-mm-1_trimmed_SJ.out.tab
1.64 kB
smb-brain-ko-mm-1_trimmed.bw
4.36 kB
iCount xlsites
smb-brain-ko-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-1_trimmed_singleAndMulti.bed.gz
50.12 kB
smb-brain-ko-mm-1_trimmed_single.bed.gz
29.44 kB
smb-brain-ko-mm-1_trimmed_reads_single.bed.gz
29.89 kB
smb-brain-ko-mm-1_trimmed_single.bedgraph
101.80 kB

Smb_brain_WT_Mm_3

Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
smb-brain-wt-mm-3_trimmed.fastq.gz
136.82 kB
smb-brain-wt-mm-3_trimmed_fastqc.zip
407.77 kB
Paraclu
peaks.bed.gz
35 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-3_fastqc.zip
395.96 kB
stderr.txt
236 B
smb-brain-wt-mm-3.fastq.gz
135.33 kB
STAR
smb-brain-wt-mm-3_trimmed_unmapped.out.mate1.fastq.gz
18.13 kB
smb-brain-wt-mm-3_trimmed.bam.bai
1.36 MB
smb-brain-wt-mm-3_trimmed_SJ.out.tab
734 B
smb-brain-wt-mm-3_trimmed.bam
313.95 kB
smb-brain-wt-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-3_trimmed.bw
4.31 kB
iCount xlsites
smb-brain-wt-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-3_trimmed_reads_single.bed.gz
22.29 kB
smb-brain-wt-mm-3_trimmed_single.bed.gz
21.92 kB
smb-brain-wt-mm-3_trimmed_singleAndMulti.bed.gz
38.11 kB
smb-brain-wt-mm-3_trimmed_single.bedgraph
74.78 kB
iCount summary
smb-brain-wt-mm-3_trimmed_single_summary_subtype.tsv
695 B
smb-brain-wt-mm-3_trimmed_single_summary_gene.tsv
139.92 kB
smb-brain-wt-mm-3_trimmed_single_summary_type.tsv
403 B
iCount RNA-maps
results.tar.gz
301.49 kB

Smb_brain_WT_Mm_2

Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
smb-brain-wt-mm-2_trimmed.fastq.gz
635.25 kB
smb-brain-wt-mm-2_trimmed_fastqc.zip
419.40 kB
iCount RNA-maps
results.tar.gz
381.76 kB
FASTQ file (single-end)
smb-brain-wt-mm-2.fastq.gz
626.82 kB
fastqc
Directory
smb-brain-wt-mm-2_fastqc.zip
419.87 kB
stderr.txt
955 B
iCount summary
smb-brain-wt-mm-2_trimmed_single_summary_gene.tsv
406.97 kB
smb-brain-wt-mm-2_trimmed_single_summary_type.tsv
410 B
smb-brain-wt-mm-2_trimmed_single_summary_subtype.tsv
835 B
STAR
smb-brain-wt-mm-2_trimmed.bam
1.45 MB
smb-brain-wt-mm-2_trimmed.bam.bai
1.68 MB
smb-brain-wt-mm-2_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-2_trimmed_unmapped.out.mate1.fastq.gz
84.03 kB
smb-brain-wt-mm-2_trimmed_SJ.out.tab
2.27 kB
smb-brain-wt-mm-2_trimmed.bw
4.50 kB
iCount xlsites
smb-brain-wt-mm-2_trimmed_reads_single.bed.gz
93.44 kB
smb-brain-wt-mm-2_trimmed_singleAndMulti.bed.gz
176.81 kB
smb-brain-wt-mm-2_trimmed_single.bed.gz
91.37 kB
smb-brain-wt-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-2_trimmed_single.bedgraph
341.71 kB
Paraclu
peaks.bed.gz
61 B

Smb_brain_KO_Mm_2

iCount RNA-maps
results.tar.gz
3.70 MB
iCount xlsites
smb-brain-ko-mm-2_trimmed_skipped.bam
2.67 kB
smb-brain-ko-mm-2_trimmed_single.bedgraph
58.13 MB
smb-brain-ko-mm-2_trimmed_singleAndMulti.bed.gz
16.84 MB
smb-brain-ko-mm-2_trimmed_single.bed.gz
12.23 MB
STAR
smb-brain-ko-mm-2_trimmed_unmapped.out.mate1.fastq.gz
37.16 MB
smb-brain-ko-mm-2_trimmed.bam.bai
3.49 MB
smb-brain-ko-mm-2_trimmed_stats.txt
1.81 kB
smb-brain-ko-mm-2_trimmed.bam
332.88 MB
smb-brain-ko-mm-2_trimmed_SJ.out.tab
750.31 kB
smb-brain-ko-mm-2_trimmed.bw
20.29 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
684 B
smb-brain-ko-mm-2_trimmed.fastq.gz
175.53 MB
smb-brain-ko-mm-2_trimmed_fastqc.zip
403.04 kB
iCount summary
smb-brain-ko-mm-2_trimmed_single_summary_gene.tsv
1.21 MB
smb-brain-ko-mm-2_trimmed_single_summary_subtype.tsv
660 B
smb-brain-ko-mm-2_trimmed_single_summary_type.tsv
274 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-2_fastqc.zip
397.33 kB
smb-brain-ko-mm-2.fastq.gz
173.47 MB
stderr.txt
955 B

Smb_brain_KO_Mm_1

Cutadapt (single-end)
smb-brain-ko-mm-1_trimmed.fastq.gz
141.06 MB
fastqc
Directory
report.txt
684 B
smb-brain-ko-mm-1_trimmed_fastqc.zip
400.47 kB
iCount xlsites
smb-brain-ko-mm-1_trimmed_single.bedgraph
49.16 MB
smb-brain-ko-mm-1_trimmed_skipped.bam
2.06 kB
smb-brain-ko-mm-1_trimmed_singleAndMulti.bed.gz
14.16 MB
smb-brain-ko-mm-1_trimmed_single.bed.gz
10.39 MB
FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-1.fastq.gz
139.29 MB
smb-brain-ko-mm-1_fastqc.zip
398.06 kB
stderr.txt
955 B
iCount RNA-maps
results.tar.gz
3.30 MB
iCount summary
smb-brain-ko-mm-1_trimmed_single_summary_type.tsv
270 B
smb-brain-ko-mm-1_trimmed_single_summary_subtype.tsv
657 B
smb-brain-ko-mm-1_trimmed_single_summary_gene.tsv
1.18 MB
STAR
smb-brain-ko-mm-1_trimmed.bam
272.66 MB
smb-brain-ko-mm-1_trimmed.bam.bai
3.58 MB
smb-brain-ko-mm-1_trimmed_unmapped.out.mate1.fastq.gz
28.56 MB
smb-brain-ko-mm-1_trimmed_stats.txt
1.81 kB
smb-brain-ko-mm-1_trimmed.bw
18.49 kB
smb-brain-ko-mm-1_trimmed_SJ.out.tab
590.71 kB

Smb_spinal cord_WT_Mm_3

iCount summary
smb-spinal-cord-wt-mm-3_trimmed_single_summary_subtype.tsv
659 B
smb-spinal-cord-wt-mm-3_trimmed_single_summary_gene.tsv
1.43 MB
smb-spinal-cord-wt-mm-3_trimmed_single_summary_type.tsv
273 B
Cutadapt (single-end)
report.txt
691 B
fastqc
Directory
smb-spinal-cord-wt-mm-3_trimmed.fastq.gz
475.09 MB
smb-spinal-cord-wt-mm-3_trimmed_fastqc.zip
391.51 kB
FASTQ file (single-end)
smb-spinal-cord-wt-mm-3.fastq.gz
466.32 MB
fastqc
Directory
stderr.txt
1.05 kB
smb-spinal-cord-wt-mm-3_fastqc.zip
385.43 kB
iCount xlsites
smb-spinal-cord-wt-mm-3_trimmed_skipped.bam
6.56 kB
smb-spinal-cord-wt-mm-3_trimmed_singleAndMulti.bed.gz
37.40 MB
smb-spinal-cord-wt-mm-3_trimmed_single.bedgraph
129.96 MB
smb-spinal-cord-wt-mm-3_trimmed_single.bed.gz
26.81 MB
STAR
smb-spinal-cord-wt-mm-3_trimmed_unmapped.out.mate1.fastq.gz
122.03 MB
smb-spinal-cord-wt-mm-3_trimmed.bam
870.76 MB
smb-spinal-cord-wt-mm-3_trimmed_stats.txt
1.81 kB
smb-spinal-cord-wt-mm-3_trimmed.bam.bai
2.77 MB
smb-spinal-cord-wt-mm-3_trimmed.bw
26.93 kB
smb-spinal-cord-wt-mm-3_trimmed_SJ.out.tab
2.04 MB
iCount RNA-maps
results.tar.gz
7.08 MB

Smb_spinal cord_HET_Mm_3

iCount RNA-maps
results.tar.gz
5.09 MB
iCount summary
smb-spinal-cord-het-mm-3_trimmed_single_summary_subtype.tsv
656 B
smb-spinal-cord-het-mm-3_trimmed_single_summary_gene.tsv
1.30 MB
smb-spinal-cord-het-mm-3_trimmed_single_summary_type.tsv
272 B
iCount xlsites
smb-spinal-cord-het-mm-3_trimmed_skipped.bam
4.05 kB
smb-spinal-cord-het-mm-3_trimmed_single.bed.gz
17.37 MB
smb-spinal-cord-het-mm-3_trimmed_singleAndMulti.bed.gz
23.68 MB
smb-spinal-cord-het-mm-3_trimmed_single.bedgraph
83.28 MB
STAR
smb-spinal-cord-het-mm-3_trimmed_stats.txt
1.81 kB
smb-spinal-cord-het-mm-3_trimmed_SJ.out.tab
1.42 MB
smb-spinal-cord-het-mm-3_trimmed_unmapped.out.mate1.fastq.gz
76.67 MB
smb-spinal-cord-het-mm-3_trimmed.bam
518.81 MB
smb-spinal-cord-het-mm-3_trimmed.bw
19.28 kB
smb-spinal-cord-het-mm-3_trimmed.bam.bai
3.09 MB
FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-het-mm-3.fastq.gz
284.01 MB
smb-spinal-cord-het-mm-3_fastqc.zip
385.75 kB
stderr.txt
1.07 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
691 B
smb-spinal-cord-het-mm-3_trimmed_fastqc.zip
392.64 kB
smb-spinal-cord-het-mm-3_trimmed.fastq.gz
289.29 MB

smb-brain-het-mm-2_fixedHeader.fastq

iCount summary
smb-brain-het-mm-2_fixedHeader_trimmed_single_summary_subtype.tsv
1020 B
smb-brain-het-mm-2_fixedHeader_trimmed_single_summary_gene.tsv
1.64 MB
smb-brain-het-mm-2_fixedHeader_trimmed_single_summary_type.tsv
438 B
iCount RNA-maps
results.tar.gz
2.17 MB
Paraclu
peaks.bed.gz
47.96 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
697 B
smb-brain-het-mm-2_fixedHeader_trimmed.fastq.gz
112.08 MB
smb-brain-het-mm-2_fixedHeader_trimmed_fastqc.zip
478.79 kB
STAR
smb-brain-het-mm-2_fixedHeader_trimmed_unmapped.out.mate1.fastq.gz
25.32 MB
smb-brain-het-mm-2_fixedHeader_trimmed.bam
220.07 MB
smb-brain-het-mm-2_fixedHeader_trimmed.bam.bai
3.57 MB
smb-brain-het-mm-2_fixedHeader_trimmed_stats.txt
1.81 kB
smb-brain-het-mm-2_fixedHeader_trimmed.bw
14.25 MB
smb-brain-het-mm-2_fixedHeader_trimmed_SJ.out.tab
573.91 kB
iCount xlsites
smb-brain-het-mm-2_fixedHeader_trimmed_skipped.bam
1.98 kB
smb-brain-het-mm-2_fixedHeader_trimmed_single.bedgraph
44.79 MB
smb-brain-het-mm-2_fixedHeader_trimmed_reads_single.bed.gz
9.77 MB
smb-brain-het-mm-2_fixedHeader_trimmed_single.bed.gz
9.51 MB
smb-brain-het-mm-2_fixedHeader_trimmed_singleAndMulti.bed.gz
13.46 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.19 kB
smb-brain-het-mm-2_fixedHeader.fastq.gz
112.88 MB
smb-brain-het-mm-2_fixedHeader_fastqc.zip
474.55 kB

Smb_brain_KO_Mm_3

Paraclu
peaks.bed.gz
35 B
iCount summary
smb-brain-ko-mm-3_trimmed_single_summary_type.tsv
407 B
smb-brain-ko-mm-3_trimmed_single_summary_subtype.tsv
824 B
smb-brain-ko-mm-3_trimmed_single_summary_gene.tsv
304.24 kB
Cutadapt (single-end)
smb-brain-ko-mm-3_trimmed.fastq.gz
461.74 kB
fastqc
Directory
report.txt
683 B
smb-brain-ko-mm-3_trimmed_fastqc.zip
447.84 kB
STAR
smb-brain-ko-mm-3_trimmed.bam
1.24 MB
smb-brain-ko-mm-3_trimmed.bam.bai
1.55 MB
smb-brain-ko-mm-3_trimmed_unmapped.out.mate1.fastq.gz
48.43 kB
smb-brain-ko-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-ko-mm-3_trimmed_SJ.out.tab
1.77 kB
smb-brain-ko-mm-3_trimmed.bw
4.48 kB
iCount RNA-maps
results.tar.gz
332.16 kB
iCount xlsites
smb-brain-ko-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-3_trimmed_reads_single.bed.gz
66.07 kB
smb-brain-ko-mm-3_trimmed_single.bedgraph
236.85 kB
smb-brain-ko-mm-3_trimmed_single.bed.gz
64.54 kB
smb-brain-ko-mm-3_trimmed_singleAndMulti.bed.gz
116.99 kB
FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-3.fastq.gz
455.03 kB
smb-brain-ko-mm-3_fastqc.zip
442.45 kB
stderr.txt
763 B

No Sample

Paraclu
peaks.bed.gz
35 B
Paraclu
peaks.bed.gz
35 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-2_fastqc.zip
397.33 kB
smb-brain-ko-mm-2.fastq.gz
173.47 MB
stderr.txt
955 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
489 B
Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
4.39 MB
Paraclu
peaks.bed.gz
35 B
iCount summary
smb-brain-ko-mm-3_trimmed_single_summary_type.tsv
407 B
smb-brain-ko-mm-3_trimmed_single_summary_subtype.tsv
824 B
smb-brain-ko-mm-3_trimmed_single_summary_gene.tsv
304.24 kB
STAR
smb-brain-wt-mm-2_trimmed.bam.bai
1.68 MB
smb-brain-wt-mm-2_trimmed_unmapped.out.mate1.fastq.gz
84.03 kB
smb-brain-wt-mm-2_trimmed.bam
1.45 MB
smb-brain-wt-mm-2_trimmed.bw
4.50 kB
smb-brain-wt-mm-2_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-2_trimmed_SJ.out.tab
2.27 kB
Cutadapt (single-end)
smb-brain-ko-mm-3_trimmed.fastq.gz
461.74 kB
fastqc
Directory
report.txt
683 B
smb-brain-ko-mm-3_trimmed_fastqc.zip
447.84 kB
Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
323.22 kB
Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
308.36 kB
FASTQ file (single-end)
smb-brain-het-mm-3.fastq.gz
412.75 kB
stderr.txt
681 B
fastqc
Directory
smb-brain-het-mm-3_fastqc.zip
554.41 kB
FASTQ file (single-end)
fastqc
Directory
smb-brain-het-mm-2.fastq.gz
346.17 kB
stderr.txt
583 B
smb-brain-het-mm-2_fastqc.zip
414.01 kB
iCount summary
smb-brain-het-mm-1_trimmed_single_summary_type.tsv
398 B
smb-brain-het-mm-1_trimmed_single_summary_gene.tsv
51.34 kB
smb-brain-het-mm-1_trimmed_single_summary_subtype.tsv
686 B
iCount RNA-maps
results.tar.gz
321.74 kB
FASTQ file (single-end)
fastqc
Directory
smb-brain-het-mm-1.fastq.gz
60.72 kB
smb-brain-het-mm-1_fastqc.zip
506.83 kB
stderr.txt
94 B
Cutadapt (single-end)
smb-brain-het-mm-1_trimmed.fastq.gz
61.01 kB
fastqc
Directory
report.txt
684 B
smb-brain-het-mm-1_trimmed_fastqc.zip
508.13 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
683 B
smb-brain-ko-mm-2_trimmed.fastq.gz
330.41 kB
smb-brain-ko-mm-2_trimmed_fastqc.zip
417.14 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
684 B
smb-brain-het-mm-3_trimmed_fastqc.zip
555.55 kB
smb-brain-het-mm-3_trimmed.fastq.gz
417.32 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
684 B
smb-brain-het-mm-2_trimmed.fastq.gz
350.60 kB
smb-brain-het-mm-2_trimmed_fastqc.zip
413.23 kB
Cutadapt (single-end)
fastqc
Directory
smb-brain-ko-mm-1_trimmed.fastq.gz
181.58 kB
report.txt
683 B
smb-brain-ko-mm-1_trimmed_fastqc.zip
400.47 kB
STAR
smb-brain-wt-mm-1_trimmed.bam.bai
1.50 MB
smb-brain-wt-mm-1_trimmed_SJ.out.tab
1.75 kB
smb-brain-wt-mm-1_trimmed.bam
825.17 kB
smb-brain-wt-mm-1_trimmed.bw
4.35 kB
smb-brain-wt-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-1_trimmed_unmapped.out.mate1.fastq.gz
62.33 kB
STAR
smb-brain-ko-mm-3_trimmed.bam
1.24 MB
smb-brain-ko-mm-3_trimmed.bam.bai
1.55 MB
smb-brain-ko-mm-3_trimmed_unmapped.out.mate1.fastq.gz
48.43 kB
smb-brain-ko-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-ko-mm-3_trimmed_SJ.out.tab
1.77 kB
smb-brain-ko-mm-3_trimmed.bw
4.48 kB
iCount RNA-maps
results.tar.gz
332.16 kB
STAR
smb-brain-ko-mm-2_trimmed_unmapped.out.mate1.fastq.gz
36.52 kB
smb-brain-ko-mm-2_trimmed.bam.bai
1.49 MB
smb-brain-ko-mm-2_trimmed.bam
792.09 kB
smb-brain-ko-mm-2_trimmed.bw
4.46 kB
smb-brain-ko-mm-2_trimmed_SJ.out.tab
1.49 kB
smb-brain-ko-mm-2_trimmed_stats.txt
1.78 kB
iCount summary
smb-spinal-cord-wt-mm-3_trimmed_single_summary_subtype.tsv
659 B
smb-spinal-cord-wt-mm-3_trimmed_single_summary_gene.tsv
1.43 MB
smb-spinal-cord-wt-mm-3_trimmed_single_summary_type.tsv
273 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
489 B
Paraclu
peaks.bed.gz
35 B
Paraclu
peaks.bed.gz
35 B
iCount summary
smb-brain-het-mm-3_trimmed_single_summary_type.tsv
408 B
smb-brain-het-mm-3_trimmed_single_summary_gene.tsv
275.53 kB
smb-brain-het-mm-3_trimmed_single_summary_subtype.tsv
700 B
Cutadapt (single-end)
smb-brain-ko-mm-1_trimmed.fastq.gz
141.06 MB
fastqc
Directory
report.txt
684 B
smb-brain-ko-mm-1_trimmed_fastqc.zip
400.47 kB
iCount summary
smb-brain-het-mm-2_fixedHeader_trimmed_single_summary_subtype.tsv
1020 B
smb-brain-het-mm-2_fixedHeader_trimmed_single_summary_gene.tsv
1.64 MB
smb-brain-het-mm-2_fixedHeader_trimmed_single_summary_type.tsv
438 B
Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-het-mm-2_trimmed.fastq.gz
178.09 MB
report.txt
691 B
smb-spinal-cord-het-mm-2_trimmed_fastqc.zip
392.16 kB
iCount RNA-maps
results.tar.gz
3.14 MB
Upload iCount sample annotation
annotation_SPINALCORD.xlsx
18.71 kB
annotation_SPINALCORD.tab.gz
736 B
iCount RNA-maps
results.tar.gz
3.98 MB
Upload iCount sample annotation
annotation_BRAIN.xlsx
24.09 kB
annotation_BRAIN.tab.gz
731 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
527 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
471 B
iCount summary
smb-spinal-cord-ko-mm-1_trimmed_single_summary_subtype.tsv
659 B
smb-spinal-cord-ko-mm-1_trimmed_single_summary_gene.tsv
1.33 MB
smb-spinal-cord-ko-mm-1_trimmed_single_summary_type.tsv
273 B
Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
smb-brain-wt-mm-2_trimmed.fastq.gz
635.25 kB
smb-brain-wt-mm-2_trimmed_fastqc.zip
419.40 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
523 B
smb-brain-ko-mm-2.fastq.gz
326.10 kB
smb-brain-ko-mm-2_fastqc.zip
417.09 kB
iCount summary
smb-brain-ko-mm-2_trimmed_single_summary_type.tsv
406 B
smb-brain-ko-mm-2_trimmed_single_summary_subtype.tsv
763 B
smb-brain-ko-mm-2_trimmed_single_summary_gene.tsv
255.12 kB
FASTQ file (single-end)
smb-brain-ko-mm-1.fastq.gz
179.24 kB
fastqc
Directory
stderr.txt
284 B
smb-brain-ko-mm-1_fastqc.zip
406.44 kB
iCount summary
smb-brain-ko-mm-1_trimmed_single_summary_type.tsv
403 B
smb-brain-ko-mm-1_trimmed_single_summary_gene.tsv
199.39 kB
smb-brain-ko-mm-1_trimmed_single_summary_subtype.tsv
632 B
iCount RNA-maps
results.tar.gz
251.54 kB
iCount summary
smb-brain-het-mm-2_trimmed_single_summary_subtype.tsv
765 B
smb-brain-het-mm-2_trimmed_single_summary_type.tsv
405 B
smb-brain-het-mm-2_trimmed_single_summary_gene.tsv
293.90 kB
iCount xlsites
smb-brain-wt-mm-2_trimmed_single.bed.gz
91.37 kB
smb-brain-wt-mm-2_trimmed_singleAndMulti.bed.gz
176.81 kB
smb-brain-wt-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-2_trimmed_reads_single.bed.gz
93.44 kB
smb-brain-wt-mm-2_trimmed_single.bedgraph
341.71 kB
iCount summary
smb-spinal-cord-ko-mm-2_trimmed_single_summary_gene.tsv
1.28 MB
smb-spinal-cord-ko-mm-2_trimmed_single_summary_subtype.tsv
658 B
smb-spinal-cord-ko-mm-2_trimmed_single_summary_type.tsv
272 B
iCount xlsites
smb-spinal-cord-ko-mm-2_trimmed_single.bed.gz
15.87 MB
smb-spinal-cord-ko-mm-2_trimmed_skipped.bam
5.14 kB
smb-spinal-cord-ko-mm-2_trimmed_singleAndMulti.bed.gz
22.15 MB
smb-spinal-cord-ko-mm-2_trimmed_single.bedgraph
75.79 MB
iCount xlsites
smb-spinal-cord-ko-mm-3_trimmed_singleAndMulti.bed.gz
11.66 MB
smb-spinal-cord-ko-mm-3_trimmed_skipped.bam
3.08 kB
smb-spinal-cord-ko-mm-3_trimmed_single.bedgraph
37.86 MB
smb-spinal-cord-ko-mm-3_trimmed_single.bed.gz
8.03 MB
iCount summary
smb-brain-het-mm-3_trimmed_single_summary_subtype.tsv
700 B
smb-brain-het-mm-3_trimmed_single_summary_gene.tsv
275.53 kB
smb-brain-het-mm-3_trimmed_single_summary_type.tsv
408 B
Paraclu
peaks.bed.gz
35 B
Cutadapt (single-end)
report.txt
691 B
fastqc
Directory
smb-spinal-cord-wt-mm-3_trimmed.fastq.gz
475.09 MB
smb-spinal-cord-wt-mm-3_trimmed_fastqc.zip
391.51 kB
iCount RNA-maps
results.tar.gz
4.58 MB
Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
332.16 kB
iCount RNA-maps
results.tar.gz
348.04 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
97.08 MB
fastqc
Directory
demux_nomatch_fastqc.zip
477.77 kB
stderr.txt
875 B
Paraclu
peaks.bed.gz
35 B
Paraclu
peaks.bed.gz
35 B
iCount summary
smb-brain-ko-mm-3_trimmed_single_summary_gene.tsv
304.24 kB
smb-brain-ko-mm-3_trimmed_single_summary_type.tsv
407 B
smb-brain-ko-mm-3_trimmed_single_summary_subtype.tsv
824 B
iCount summary
smb-brain-het-mm-1_trimmed_single_summary_gene.tsv
51.34 kB
smb-brain-het-mm-1_trimmed_single_summary_subtype.tsv
686 B
smb-brain-het-mm-1_trimmed_single_summary_type.tsv
398 B
iCount RNA-maps
results.tar.gz
3.25 MB
iCount RNA-maps
results.tar.gz
381.76 kB
FASTQ file (single-end)
fastqc
Directory
merge_brain.fastq.gz
1.57 GB
stderr.txt
835 B
merge_brain_fastqc.zip
509.72 kB
iCount RNA-maps
results.tar.gz
3.70 MB
iCount summary
smb-brain-wt-mm-1_trimmed_single_summary_type.tsv
403 B
smb-brain-wt-mm-1_trimmed_single_summary_gene.tsv
282.53 kB
smb-brain-wt-mm-1_trimmed_single_summary_subtype.tsv
827 B
iCount summary
smb-brain-het-mm-2_trimmed_single_summary_type.tsv
405 B
smb-brain-het-mm-2_trimmed_single_summary_gene.tsv
293.90 kB
smb-brain-het-mm-2_trimmed_single_summary_subtype.tsv
765 B
STAR
smb-brain-ko-mm-1_trimmed_unmapped.out.mate1.fastq.gz
20.02 kB
smb-brain-ko-mm-1_trimmed.bam.bai
1.39 MB
smb-brain-ko-mm-1_trimmed.bam
406.82 kB
smb-brain-ko-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-ko-mm-1_trimmed_SJ.out.tab
1.64 kB
smb-brain-ko-mm-1_trimmed.bw
4.36 kB
STAR
smb-brain-het-mm-2_trimmed.bam.bai
1.50 MB
smb-brain-het-mm-2_trimmed_unmapped.out.mate1.fastq.gz
36.65 kB
smb-brain-het-mm-2_trimmed.bam
781.89 kB
smb-brain-het-mm-2_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-2_trimmed_SJ.out.tab
1.16 kB
smb-brain-het-mm-2_trimmed.bw
4.40 kB
STAR
smb-brain-het-mm-1_trimmed_unmapped.out.mate1.fastq.gz
9.91 kB
smb-brain-het-mm-1_trimmed_SJ.out.tab
880 B
smb-brain-het-mm-1_trimmed.bam.bai
1.27 MB
smb-brain-het-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-1_trimmed.bw
4.30 kB
smb-brain-het-mm-1_trimmed.bam
206.38 kB
STAR
smb-brain-het-mm-3_trimmed_unmapped.out.mate1.fastq.gz
149.90 kB
smb-brain-het-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-3_trimmed_SJ.out.tab
3.52 kB
smb-brain-het-mm-3_trimmed.bam.bai
1.46 MB
smb-brain-het-mm-3_trimmed.bw
4.37 kB
smb-brain-het-mm-3_trimmed.bam
846.18 kB
iCount xlsites
smb-brain-wt-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-1_trimmed_singleAndMulti.bed.gz
92.66 kB
smb-brain-wt-mm-1_trimmed_single.bed.gz
48.37 kB
smb-brain-wt-mm-1_trimmed_single.bedgraph
173.02 kB
smb-brain-wt-mm-1_trimmed_reads_single.bed.gz
49.34 kB
iCount xlsites
smb-brain-ko-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-3_trimmed_reads_single.bed.gz
66.07 kB
smb-brain-ko-mm-3_trimmed_single.bedgraph
236.85 kB
smb-brain-ko-mm-3_trimmed_single.bed.gz
64.54 kB
smb-brain-ko-mm-3_trimmed_singleAndMulti.bed.gz
116.99 kB
iCount xlsites
smb-brain-ko-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-2_trimmed_singleAndMulti.bed.gz
89.93 kB
smb-brain-ko-mm-2_trimmed_reads_single.bed.gz
51.64 kB
smb-brain-ko-mm-2_trimmed_single.bedgraph
181.91 kB
smb-brain-ko-mm-2_trimmed_single.bed.gz
50.53 kB
iCount xlsites
smb-brain-ko-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-1_trimmed_singleAndMulti.bed.gz
50.12 kB
smb-brain-ko-mm-1_trimmed_single.bed.gz
29.44 kB
smb-brain-ko-mm-1_trimmed_reads_single.bed.gz
29.89 kB
smb-brain-ko-mm-1_trimmed_single.bedgraph
101.80 kB
iCount xlsites
smb-brain-het-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-2_trimmed_single.bedgraph
199.56 kB
smb-brain-het-mm-2_trimmed_singleAndMulti.bed.gz
96.21 kB
smb-brain-het-mm-2_trimmed_single.bed.gz
55.16 kB
smb-brain-het-mm-2_trimmed_reads_single.bed.gz
56.38 kB
iCount xlsites
smb-brain-het-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-3_trimmed_singleAndMulti.bed.gz
77.35 kB
smb-brain-het-mm-3_trimmed_reads_single.bed.gz
45.34 kB
smb-brain-het-mm-3_trimmed_single.bed.gz
44.58 kB
smb-brain-het-mm-3_trimmed_single.bedgraph
158.88 kB
iCount xlsites
smb-brain-het-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-1_trimmed_single.bed.gz
6.47 kB
smb-brain-het-mm-1_trimmed_reads_single.bed.gz
6.57 kB
smb-brain-het-mm-1_trimmed_singleAndMulti.bed.gz
10.92 kB
smb-brain-het-mm-1_trimmed_single.bedgraph
21.22 kB
FASTQ file (single-end)
smb-brain-wt-mm-2.fastq.gz
626.82 kB
fastqc
Directory
smb-brain-wt-mm-2_fastqc.zip
419.87 kB
stderr.txt
955 B
FASTQ file (single-end)
smb-brain-het-mm-3.fastq.gz
412.75 kB
fastqc
Directory
stderr.txt
681 B
smb-brain-het-mm-3_fastqc.zip
554.41 kB
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-1.fastq.gz
342.74 kB
smb-brain-wt-mm-1_fastqc.zip
444.30 kB
stderr.txt
571 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-3.fastq.gz
135.33 kB
stderr.txt
236 B
smb-brain-wt-mm-3_fastqc.zip
395.96 kB
iCount RNA-maps
results.tar.gz
301.49 kB
Cutadapt (single-end)
smb-brain-wt-mm-3_trimmed.fastq.gz
136.82 kB
fastqc
Directory
smb-brain-wt-mm-3_trimmed_fastqc.zip
407.77 kB
report.txt
683 B
iCount summary
smb-brain-wt-mm-2_trimmed_single_summary_gene.tsv
406.97 kB
smb-brain-wt-mm-2_trimmed_single_summary_type.tsv
410 B
smb-brain-wt-mm-2_trimmed_single_summary_subtype.tsv
835 B
STAR
smb-brain-wt-mm-3_trimmed.bam.bai
1.36 MB
smb-brain-wt-mm-3_trimmed_unmapped.out.mate1.fastq.gz
18.13 kB
smb-brain-wt-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-3_trimmed.bw
4.31 kB
smb-brain-wt-mm-3_trimmed.bam
313.95 kB
smb-brain-wt-mm-3_trimmed_SJ.out.tab
734 B
iCount xlsites
smb-brain-wt-mm-3_trimmed_single.bed.gz
21.92 kB
smb-brain-wt-mm-3_trimmed_single.bedgraph
74.78 kB
smb-brain-wt-mm-3_trimmed_singleAndMulti.bed.gz
38.11 kB
smb-brain-wt-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-3_trimmed_reads_single.bed.gz
22.29 kB
iCount summary
smb-brain-wt-mm-3_trimmed_single_summary_subtype.tsv
695 B
smb-brain-wt-mm-3_trimmed_single_summary_gene.tsv
139.92 kB
smb-brain-wt-mm-3_trimmed_single_summary_type.tsv
403 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
763 B
smb-brain-ko-mm-3.fastq.gz
455.03 kB
smb-brain-ko-mm-3_fastqc.zip
442.45 kB
STAR
smb-brain-wt-mm-2_trimmed.bam
1.45 MB
smb-brain-wt-mm-2_trimmed.bam.bai
1.68 MB
smb-brain-wt-mm-2_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-2_trimmed_unmapped.out.mate1.fastq.gz
84.03 kB
smb-brain-wt-mm-2_trimmed_SJ.out.tab
2.27 kB
smb-brain-wt-mm-2_trimmed.bw
4.50 kB
Cutadapt (single-end)
smb-brain-wt-mm-1_trimmed.fastq.gz
346.93 kB
fastqc
Directory
smb-brain-wt-mm-1_trimmed_fastqc.zip
448.19 kB
report.txt
683 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-2.fastq.gz
326.10 kB
smb-brain-ko-mm-2_fastqc.zip
417.09 kB
stderr.txt
523 B
iCount xlsites
smb-brain-wt-mm-2_trimmed_reads_single.bed.gz
93.44 kB
smb-brain-wt-mm-2_trimmed_singleAndMulti.bed.gz
176.81 kB
smb-brain-wt-mm-2_trimmed_single.bed.gz
91.37 kB
smb-brain-wt-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-2_trimmed_single.bedgraph
341.71 kB
iCount RNA-maps
results.tar.gz
323.23 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
284 B
smb-brain-ko-mm-1.fastq.gz
179.24 kB
smb-brain-ko-mm-1_fastqc.zip
406.44 kB
iCount RNA-maps
results.tar.gz
308.35 kB
STAR
smb-brain-wt-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-1_trimmed.bam
825.17 kB
smb-brain-wt-mm-1_trimmed.bam.bai
1.50 MB
smb-brain-wt-mm-1_trimmed_SJ.out.tab
1.75 kB
smb-brain-wt-mm-1_trimmed_unmapped.out.mate1.fastq.gz
62.33 kB
smb-brain-wt-mm-1_trimmed.bw
4.35 kB
Cutadapt (single-end)
smb-brain-ko-mm-3_trimmed_fastqc.zip
447.84 kB
report.txt
683 B
fastqc
Directory
smb-brain-ko-mm-3_trimmed.fastq.gz
461.74 kB
Cutadapt (single-end)
fastqc
Directory
smb-brain-het-mm-3_trimmed.fastq.gz
417.32 kB
report.txt
684 B
smb-brain-het-mm-3_trimmed_fastqc.zip
555.55 kB
iCount RNA-maps
results.tar.gz
341.53 kB
FASTQ file (single-end)
smb-brain-het-mm-2.fastq.gz
346.17 kB
fastqc
Directory
stderr.txt
583 B
smb-brain-het-mm-2_fastqc.zip
414.01 kB
iCount RNA-maps
results.tar.gz
321.75 kB
Paraclu
peaks.bed.gz
35 B
FASTQ file (single-end)
smb-brain-het-mm-1.fastq.gz
60.72 kB
fastqc
Directory
stderr.txt
94 B
smb-brain-het-mm-1_fastqc.zip
506.83 kB
Paraclu
peaks.bed.gz
61 B
iCount RNA-maps
results.tar.gz
251.54 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
683 B
smb-brain-ko-mm-2_trimmed.fastq.gz
330.41 kB
smb-brain-ko-mm-2_trimmed_fastqc.zip
417.14 kB
iCount xlsites
smb-brain-wt-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-1_trimmed_single.bed.gz
48.37 kB
smb-brain-wt-mm-1_trimmed_reads_single.bed.gz
49.34 kB
smb-brain-wt-mm-1_trimmed_singleAndMulti.bed.gz
92.66 kB
smb-brain-wt-mm-1_trimmed_single.bedgraph
173.02 kB
Cutadapt (single-end)
smb-brain-ko-mm-1_trimmed.fastq.gz
181.58 kB
fastqc
Directory
report.txt
683 B
smb-brain-ko-mm-1_trimmed_fastqc.zip
400.47 kB
Cutadapt (single-end)
report.txt
684 B
fastqc
Directory
smb-brain-het-mm-2_trimmed.fastq.gz
350.60 kB
smb-brain-het-mm-2_trimmed_fastqc.zip
413.23 kB
STAR
smb-brain-ko-mm-3_trimmed_unmapped.out.mate1.fastq.gz
48.43 kB
smb-brain-ko-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-ko-mm-3_trimmed.bam.bai
1.55 MB
smb-brain-ko-mm-3_trimmed.bam
1.24 MB
smb-brain-ko-mm-3_trimmed.bw
4.48 kB
smb-brain-ko-mm-3_trimmed_SJ.out.tab
1.77 kB
Cutadapt (single-end)
report.txt
684 B
smb-brain-het-mm-1_trimmed.fastq.gz
61.01 kB
fastqc
Directory
smb-brain-het-mm-1_trimmed_fastqc.zip
508.13 kB
iCount summary
smb-brain-wt-mm-1_trimmed_single_summary_subtype.tsv
827 B
smb-brain-wt-mm-1_trimmed_single_summary_type.tsv
403 B
smb-brain-wt-mm-1_trimmed_single_summary_gene.tsv
282.53 kB
STAR
smb-brain-ko-mm-2_trimmed_unmapped.out.mate1.fastq.gz
36.52 kB
smb-brain-ko-mm-2_trimmed.bam.bai
1.49 MB
smb-brain-ko-mm-2_trimmed_SJ.out.tab
1.49 kB
smb-brain-ko-mm-2_trimmed.bam
792.09 kB
smb-brain-ko-mm-2_trimmed.bw
4.46 kB
smb-brain-ko-mm-2_trimmed_stats.txt
1.78 kB
STAR
smb-brain-ko-mm-1_trimmed_unmapped.out.mate1.fastq.gz
20.02 kB
smb-brain-ko-mm-1_trimmed.bam.bai
1.39 MB
smb-brain-ko-mm-1_trimmed.bw
4.36 kB
smb-brain-ko-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-ko-mm-1_trimmed.bam
406.82 kB
smb-brain-ko-mm-1_trimmed_SJ.out.tab
1.64 kB
STAR
smb-brain-het-mm-3_trimmed.bam.bai
1.46 MB
smb-brain-het-mm-3_trimmed_unmapped.out.mate1.fastq.gz
149.90 kB
smb-brain-het-mm-3_trimmed.bam
846.18 kB
smb-brain-het-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-3_trimmed_SJ.out.tab
3.52 kB
smb-brain-het-mm-3_trimmed.bw
4.37 kB
iCount xlsites
smb-brain-ko-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-3_trimmed_single.bed.gz
64.54 kB
smb-brain-ko-mm-3_trimmed_reads_single.bed.gz
66.07 kB
smb-brain-ko-mm-3_trimmed_singleAndMulti.bed.gz
116.99 kB
smb-brain-ko-mm-3_trimmed_single.bedgraph
236.85 kB
STAR
smb-brain-het-mm-2_trimmed.bam.bai
1.50 MB
smb-brain-het-mm-2_trimmed.bam
781.89 kB
smb-brain-het-mm-2_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-2_trimmed_SJ.out.tab
1.16 kB
smb-brain-het-mm-2_trimmed_unmapped.out.mate1.fastq.gz
36.65 kB
smb-brain-het-mm-2_trimmed.bw
4.40 kB
STAR
smb-brain-het-mm-1_trimmed.bam
206.38 kB
smb-brain-het-mm-1_trimmed_unmapped.out.mate1.fastq.gz
9.91 kB
smb-brain-het-mm-1_trimmed.bam.bai
1.27 MB
smb-brain-het-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-1_trimmed.bw
4.30 kB
smb-brain-het-mm-1_trimmed_SJ.out.tab
880 B
iCount xlsites
smb-brain-ko-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-2_trimmed_reads_single.bed.gz
51.64 kB
smb-brain-ko-mm-2_trimmed_single.bedgraph
181.91 kB
smb-brain-ko-mm-2_trimmed_singleAndMulti.bed.gz
89.93 kB
smb-brain-ko-mm-2_trimmed_single.bed.gz
50.53 kB
iCount xlsites
smb-brain-ko-mm-1_trimmed_single.bed.gz
29.44 kB
smb-brain-ko-mm-1_trimmed_singleAndMulti.bed.gz
50.12 kB
smb-brain-ko-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-1_trimmed_reads_single.bed.gz
29.89 kB
smb-brain-ko-mm-1_trimmed_single.bedgraph
101.80 kB
iCount xlsites
smb-brain-het-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-3_trimmed_singleAndMulti.bed.gz
77.35 kB
smb-brain-het-mm-3_trimmed_single.bed.gz
44.58 kB
smb-brain-het-mm-3_trimmed_reads_single.bed.gz
45.34 kB
smb-brain-het-mm-3_trimmed_single.bedgraph
158.88 kB
iCount xlsites
smb-brain-het-mm-2_trimmed_single.bed.gz
55.16 kB
smb-brain-het-mm-2_trimmed_singleAndMulti.bed.gz
96.21 kB
smb-brain-het-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-2_trimmed_reads_single.bed.gz
56.38 kB
smb-brain-het-mm-2_trimmed_single.bedgraph
199.56 kB
iCount xlsites
smb-brain-het-mm-1_trimmed_singleAndMulti.bed.gz
10.92 kB
smb-brain-het-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-1_trimmed_single.bed.gz
6.47 kB
smb-brain-het-mm-1_trimmed_reads_single.bed.gz
6.57 kB
smb-brain-het-mm-1_trimmed_single.bedgraph
21.22 kB
iCount summary
smb-brain-ko-mm-2_trimmed_single_summary_gene.tsv
255.12 kB
smb-brain-ko-mm-2_trimmed_single_summary_subtype.tsv
763 B
smb-brain-ko-mm-2_trimmed_single_summary_type.tsv
406 B
iCount summary
smb-brain-ko-mm-1_trimmed_single_summary_subtype.tsv
632 B
smb-brain-ko-mm-1_trimmed_single_summary_gene.tsv
199.39 kB
smb-brain-ko-mm-1_trimmed_single_summary_type.tsv
403 B
iCount RNA-maps
results.tar.gz
2.17 MB
Paraclu
peaks.bed.gz
35 B
Paraclu
peaks.bed.gz
47.96 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
697 B
smb-brain-het-mm-2_fixedHeader_trimmed.fastq.gz
112.08 MB
smb-brain-het-mm-2_fixedHeader_trimmed_fastqc.zip
478.79 kB
iCount xlsites
smb-brain-ko-mm-2_trimmed_skipped.bam
2.67 kB
smb-brain-ko-mm-2_trimmed_single.bedgraph
58.13 MB
smb-brain-ko-mm-2_trimmed_singleAndMulti.bed.gz
16.84 MB
smb-brain-ko-mm-2_trimmed_single.bed.gz
12.23 MB
STAR
smb-brain-ko-mm-2_trimmed_unmapped.out.mate1.fastq.gz
37.16 MB
smb-brain-ko-mm-2_trimmed.bam.bai
3.49 MB
smb-brain-ko-mm-2_trimmed_stats.txt
1.81 kB
smb-brain-ko-mm-2_trimmed.bam
332.88 MB
smb-brain-ko-mm-2_trimmed_SJ.out.tab
750.31 kB
smb-brain-ko-mm-2_trimmed.bw
20.29 kB
iCount summary
smb-brain-wt-mm-3_trimmed_single_summary_subtype.tsv
660 B
smb-brain-wt-mm-3_trimmed_single_summary_type.tsv
273 B
smb-brain-wt-mm-3_trimmed_single_summary_gene.tsv
1.27 MB
STAR
smb-brain-het-mm-2_fixedHeader_trimmed_unmapped.out.mate1.fastq.gz
25.32 MB
smb-brain-het-mm-2_fixedHeader_trimmed.bam
220.07 MB
smb-brain-het-mm-2_fixedHeader_trimmed.bam.bai
3.57 MB
smb-brain-het-mm-2_fixedHeader_trimmed_stats.txt
1.81 kB
smb-brain-het-mm-2_fixedHeader_trimmed.bw
14.25 MB
smb-brain-het-mm-2_fixedHeader_trimmed_SJ.out.tab
573.91 kB
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-2.fastq.gz
105.10 MB
smb-brain-wt-mm-2_fastqc.zip
383.88 kB
stderr.txt
955 B
FASTQ file (single-end)
smb-spinal-cord-ko-mm-1.fastq.gz
312.81 MB
fastqc
Directory
stderr.txt
1.05 kB
smb-spinal-cord-ko-mm-1_fastqc.zip
390.41 kB
iCount xlsites
smb-brain-het-mm-2_fixedHeader_trimmed_skipped.bam
1.98 kB
smb-brain-het-mm-2_fixedHeader_trimmed_single.bedgraph
44.79 MB
smb-brain-het-mm-2_fixedHeader_trimmed_reads_single.bed.gz
9.77 MB
smb-brain-het-mm-2_fixedHeader_trimmed_single.bed.gz
9.51 MB
smb-brain-het-mm-2_fixedHeader_trimmed_singleAndMulti.bed.gz
13.46 MB
FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-het-mm-2.fastq.gz
174.73 MB
smb-spinal-cord-het-mm-2_fastqc.zip
389.81 kB
stderr.txt
1.12 kB
FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-wt-mm-2.fastq.gz
229.45 MB
smb-spinal-cord-wt-mm-2_fastqc.zip
384.60 kB
stderr.txt
1.05 kB
FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-ko-mm-3.fastq.gz
137.77 MB
stderr.txt
1.05 kB
smb-spinal-cord-ko-mm-3_fastqc.zip
390.82 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.19 kB
smb-brain-het-mm-2_fixedHeader.fastq.gz
112.88 MB
smb-brain-het-mm-2_fixedHeader_fastqc.zip
474.55 kB
iCount xlsites
smb-brain-ko-mm-1_trimmed_single.bedgraph
49.16 MB
smb-brain-ko-mm-1_trimmed_skipped.bam
2.06 kB
smb-brain-ko-mm-1_trimmed_singleAndMulti.bed.gz
14.16 MB
smb-brain-ko-mm-1_trimmed_single.bed.gz
10.39 MB
FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-1.fastq.gz
139.29 MB
smb-brain-ko-mm-1_fastqc.zip
398.06 kB
stderr.txt
955 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-1.fastq.gz
163.63 MB
smb-brain-wt-mm-1_fastqc.zip
384.45 kB
stderr.txt
955 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.05 kB
smb-spinal-cord-ko-mm-2.fastq.gz
280.79 MB
smb-spinal-cord-ko-mm-2_fastqc.zip
391.73 kB
FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-wt-mm-1.fastq.gz
362.25 MB
smb-spinal-cord-wt-mm-1_fastqc.zip
381.92 kB
stderr.txt
1.05 kB
iCount xlsites
smb-brain-het-mm-1_trimmed_skipped.bam
2.12 kB
smb-brain-het-mm-1_trimmed_singleAndMulti.bed.gz
10.89 MB
smb-brain-het-mm-1_trimmed_single.bedgraph
37.93 MB
smb-brain-het-mm-1_trimmed_single.bed.gz
8.07 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
975 B
smb-brain-het-mm-1_fastqc.zip
384.29 kB
smb-brain-het-mm-1.fastq.gz
103.07 MB
STAR
smb-brain-wt-mm-1_trimmed_unmapped.out.mate1.fastq.gz
36.75 MB
smb-brain-wt-mm-1_trimmed.bam
279.74 MB
smb-brain-wt-mm-1_trimmed.bw
15.80 kB
smb-brain-wt-mm-1_trimmed_SJ.out.tab
730.89 kB
smb-brain-wt-mm-1_trimmed_stats.txt
1.81 kB
smb-brain-wt-mm-1_trimmed.bam.bai
3.47 MB
FASTQ file (single-end)
smb-brain-wt-mm-3.fastq.gz
213.89 MB
fastqc
Directory
stderr.txt
955 B
smb-brain-wt-mm-3_fastqc.zip
387.86 kB
FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-3.fastq.gz
113.31 MB
stderr.txt
955 B
smb-brain-ko-mm-3_fastqc.zip
401.66 kB
FASTQ file (single-end)
smb-spinal-cord-wt-mm-3.fastq.gz
466.32 MB
fastqc
Directory
stderr.txt
1.05 kB
smb-spinal-cord-wt-mm-3_fastqc.zip
385.43 kB
STAR
smb-spinal-cord-het-mm-2_trimmed.bam.bai
3.37 MB
smb-spinal-cord-het-mm-2_trimmed_unmapped.out.mate1.fastq.gz
47.52 MB
smb-spinal-cord-het-mm-2_trimmed.bam
325.88 MB
smb-spinal-cord-het-mm-2_trimmed_stats.txt
1.81 kB
smb-spinal-cord-het-mm-2_trimmed.bw
16.27 kB
smb-spinal-cord-het-mm-2_trimmed_SJ.out.tab
971.41 kB
STAR
smb-spinal-cord-wt-mm-2_trimmed.bam.bai
3.25 MB
smb-spinal-cord-wt-mm-2_trimmed_unmapped.out.mate1.fastq.gz
56.94 MB
smb-spinal-cord-wt-mm-2_trimmed.bam
418.32 MB
smb-spinal-cord-wt-mm-2_trimmed_stats.txt
1.81 kB
smb-spinal-cord-wt-mm-2_trimmed_SJ.out.tab
1.19 MB
smb-spinal-cord-wt-mm-2_trimmed.bw
17.71 kB
STAR
smb-spinal-cord-ko-mm-3_trimmed_unmapped.out.mate1.fastq.gz
36.75 MB
smb-spinal-cord-ko-mm-3_trimmed.bam.bai
3.37 MB
smb-spinal-cord-ko-mm-3_trimmed_SJ.out.tab
934.57 kB
smb-spinal-cord-ko-mm-3_trimmed.bam
273.85 MB
smb-spinal-cord-ko-mm-3_trimmed_stats.txt
1.81 kB
smb-spinal-cord-ko-mm-3_trimmed.bw
17.74 kB
FASTQ file (single-end)
smb-spinal-cord-het-mm-1.fastq.gz
130.48 MB
fastqc
Directory
stderr.txt
1.07 kB
smb-spinal-cord-het-mm-1_fastqc.zip
389.36 kB
iCount xlsites
smb-brain-het-mm-2_trimmed_skipped.bam
2.45 kB
smb-brain-het-mm-2_trimmed_singleAndMulti.bed.gz
12.74 MB
smb-brain-het-mm-2_trimmed_single.bed.gz
9.23 MB
smb-brain-het-mm-2_trimmed_single.bedgraph
43.54 MB
Cutadapt (single-end)
fastqc
Directory
smb-brain-het-mm-2_trimmed.fastq.gz
122.81 MB
smb-brain-het-mm-2_trimmed_fastqc.zip
392.48 kB
report.txt
685 B
iCount RNA-maps
results.tar.gz
3.30 MB
iCount xlsites
smb-brain-wt-mm-1_trimmed_skipped.bam
2.26 kB
smb-brain-wt-mm-1_trimmed_single.bedgraph
58.61 MB
smb-brain-wt-mm-1_trimmed_singleAndMulti.bed.gz
16.88 MB
smb-brain-wt-mm-1_trimmed_single.bed.gz
12.33 MB
Paraclu
peaks.bed.gz
61 B
Cutadapt (single-end)
fastqc
Directory
report.txt
684 B
smb-brain-ko-mm-2_trimmed.fastq.gz
175.53 MB
smb-brain-ko-mm-2_trimmed_fastqc.zip
403.04 kB
iCount RNA-maps
results.tar.gz
5.99 MB
iCount RNA-maps
results.tar.gz
5.70 MB
iCount xlsites
smb-spinal-cord-ko-mm-1_trimmed_skipped.bam
4.53 kB
smb-spinal-cord-ko-mm-1_trimmed_single.bed.gz
18.37 MB
smb-spinal-cord-ko-mm-1_trimmed_singleAndMulti.bed.gz
25.26 MB
smb-spinal-cord-ko-mm-1_trimmed_single.bedgraph
88.55 MB
iCount RNA-maps
results.tar.gz
3.66 MB
iCount xlsites
smb-spinal-cord-wt-mm-3_trimmed_skipped.bam
6.56 kB
smb-spinal-cord-wt-mm-3_trimmed_singleAndMulti.bed.gz
37.40 MB
smb-spinal-cord-wt-mm-3_trimmed_single.bedgraph
129.96 MB
smb-spinal-cord-wt-mm-3_trimmed_single.bed.gz
26.81 MB
STAR
smb-spinal-cord-ko-mm-1_trimmed.bam.bai
3.02 MB
smb-spinal-cord-ko-mm-1_trimmed_unmapped.out.mate1.fastq.gz
79.04 MB
smb-spinal-cord-ko-mm-1_trimmed_SJ.out.tab
1.65 MB
smb-spinal-cord-ko-mm-1_trimmed_stats.txt
1.81 kB
smb-spinal-cord-ko-mm-1_trimmed.bw
26.62 kB
smb-spinal-cord-ko-mm-1_trimmed.bam
621.88 MB
iCount summary
smb-spinal-cord-het-mm-2_trimmed_single_summary_subtype.tsv
658 B
smb-spinal-cord-het-mm-2_trimmed_single_summary_gene.tsv
1.19 MB
smb-spinal-cord-het-mm-2_trimmed_single_summary_type.tsv
270 B
STAR
smb-spinal-cord-wt-mm-3_trimmed_unmapped.out.mate1.fastq.gz
122.03 MB
smb-spinal-cord-wt-mm-3_trimmed.bam
870.76 MB
smb-spinal-cord-wt-mm-3_trimmed_stats.txt
1.81 kB
smb-spinal-cord-wt-mm-3_trimmed.bam.bai
2.77 MB
smb-spinal-cord-wt-mm-3_trimmed.bw
26.93 kB
smb-spinal-cord-wt-mm-3_trimmed_SJ.out.tab
2.04 MB
iCount xlsites
smb-spinal-cord-het-mm-2_trimmed_skipped.bam
2.65 kB
smb-spinal-cord-het-mm-2_trimmed_singleAndMulti.bed.gz
14.89 MB
smb-spinal-cord-het-mm-2_trimmed_single.bedgraph
50.40 MB
smb-spinal-cord-het-mm-2_trimmed_single.bed.gz
10.66 MB
iCount summary
smb-spinal-cord-wt-mm-2_trimmed_single_summary_subtype.tsv
658 B
smb-spinal-cord-wt-mm-2_trimmed_single_summary_type.tsv
274 B
smb-spinal-cord-wt-mm-2_trimmed_single_summary_gene.tsv
1.26 MB
iCount xlsites
smb-spinal-cord-wt-mm-2_trimmed_skipped.bam
3.99 kB
smb-spinal-cord-wt-mm-2_trimmed_singleAndMulti.bed.gz
19.69 MB
smb-spinal-cord-wt-mm-2_trimmed_single.bedgraph
69.64 MB
smb-spinal-cord-wt-mm-2_trimmed_single.bed.gz
14.58 MB
iCount summary
smb-spinal-cord-ko-mm-3_trimmed_single_summary_gene.tsv
1.14 MB
smb-spinal-cord-ko-mm-3_trimmed_single_summary_type.tsv
271 B
smb-spinal-cord-ko-mm-3_trimmed_single_summary_subtype.tsv
653 B
Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-wt-mm-2_trimmed.fastq.gz
233.87 MB
report.txt
690 B
smb-spinal-cord-wt-mm-2_trimmed_fastqc.zip
389.51 kB
iCount summary
smb-spinal-cord-wt-mm-1_trimmed_single_summary_type.tsv
271 B
smb-spinal-cord-wt-mm-1_trimmed_single_summary_subtype.tsv
656 B
smb-spinal-cord-wt-mm-1_trimmed_single_summary_gene.tsv
1.35 MB
iCount RNA-maps
results.tar.gz
5.09 MB
STAR
smb-spinal-cord-ko-mm-2_trimmed.bam.bai
3.16 MB
smb-spinal-cord-ko-mm-2_trimmed_unmapped.out.mate1.fastq.gz
71.49 MB
smb-spinal-cord-ko-mm-2_trimmed.bam
554.24 MB
smb-spinal-cord-ko-mm-2_trimmed_SJ.out.tab
1.23 MB
smb-spinal-cord-ko-mm-2_trimmed_stats.txt
1.81 kB
smb-spinal-cord-ko-mm-2_trimmed.bw
24.20 kB
iCount summary
smb-spinal-cord-het-mm-3_trimmed_single_summary_subtype.tsv
656 B
smb-spinal-cord-het-mm-3_trimmed_single_summary_gene.tsv
1.30 MB
smb-spinal-cord-het-mm-3_trimmed_single_summary_type.tsv
272 B
Cutadapt (single-end)
fastqc
Directory
report.txt
690 B
smb-spinal-cord-ko-mm-2_trimmed_fastqc.zip
398.62 kB
smb-spinal-cord-ko-mm-2_trimmed.fastq.gz
286.02 MB
iCount xlsites
smb-spinal-cord-het-mm-3_trimmed_skipped.bam
4.05 kB
smb-spinal-cord-het-mm-3_trimmed_single.bed.gz
17.37 MB
smb-spinal-cord-het-mm-3_trimmed_singleAndMulti.bed.gz
23.68 MB
smb-spinal-cord-het-mm-3_trimmed_single.bedgraph
83.28 MB
STAR
smb-spinal-cord-wt-mm-1_trimmed.bam
658.78 MB
smb-spinal-cord-wt-mm-1_trimmed_stats.txt
1.81 kB
smb-spinal-cord-wt-mm-1_trimmed_unmapped.out.mate1.fastq.gz
95.00 MB
smb-spinal-cord-wt-mm-1_trimmed.bam.bai
3.00 MB
smb-spinal-cord-wt-mm-1_trimmed_SJ.out.tab
1.73 MB
smb-spinal-cord-wt-mm-1_trimmed.bw
22.07 kB
Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-wt-mm-1_trimmed_fastqc.zip
385.26 kB
report.txt
691 B
smb-spinal-cord-wt-mm-1_trimmed.fastq.gz
368.98 MB
Cutadapt (single-end)
report.txt
690 B
fastqc
Directory
smb-spinal-cord-ko-mm-3_trimmed.fastq.gz
140.35 MB
smb-spinal-cord-ko-mm-3_trimmed_fastqc.zip
392.57 kB
STAR
smb-spinal-cord-het-mm-3_trimmed_stats.txt
1.81 kB
smb-spinal-cord-het-mm-3_trimmed_SJ.out.tab
1.42 MB
smb-spinal-cord-het-mm-3_trimmed_unmapped.out.mate1.fastq.gz
76.67 MB
smb-spinal-cord-het-mm-3_trimmed.bam
518.81 MB
smb-spinal-cord-het-mm-3_trimmed.bw
19.28 kB
smb-spinal-cord-het-mm-3_trimmed.bam.bai
3.09 MB
iCount summary
smb-spinal-cord-het-mm-1_trimmed_single_summary_gene.tsv
1.14 MB
smb-spinal-cord-het-mm-1_trimmed_single_summary_type.tsv
268 B
smb-spinal-cord-het-mm-1_trimmed_single_summary_subtype.tsv
651 B
iCount summary
smb-brain-het-mm-3_trimmed_single_summary_type.tsv
272 B
smb-brain-het-mm-3_trimmed_single_summary_gene.tsv
1.25 MB
smb-brain-het-mm-3_trimmed_single_summary_subtype.tsv
660 B
STAR
smb-spinal-cord-het-mm-1_trimmed_stats.txt
1.81 kB
smb-spinal-cord-het-mm-1_trimmed.bam
238.56 MB
smb-spinal-cord-het-mm-1_trimmed.bam.bai
3.37 MB
smb-spinal-cord-het-mm-1_trimmed_unmapped.out.mate1.fastq.gz
35.61 MB
smb-spinal-cord-het-mm-1_trimmed_SJ.out.tab
777.15 kB
smb-spinal-cord-het-mm-1_trimmed.bw
12.48 kB
Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-het-mm-1_trimmed.fastq.gz
132.77 MB
smb-spinal-cord-het-mm-1_trimmed_fastqc.zip
393.31 kB
report.txt
691 B
iCount summary
smb-brain-het-mm-1_trimmed_single_summary_type.tsv
272 B
smb-brain-het-mm-1_trimmed_single_summary_gene.tsv
1.12 MB
smb-brain-het-mm-1_trimmed_single_summary_subtype.tsv
656 B
Cutadapt (single-end)
fastqc
Directory
smb-brain-het-mm-3_trimmed.fastq.gz
213.61 MB
smb-brain-het-mm-3_trimmed_fastqc.zip
396.03 kB
report.txt
685 B
iCount RNA-maps
results.tar.gz
2.81 MB
iCount summary
smb-brain-ko-mm-2_trimmed_single_summary_gene.tsv
1.21 MB
smb-brain-ko-mm-2_trimmed_single_summary_subtype.tsv
660 B
smb-brain-ko-mm-2_trimmed_single_summary_type.tsv
274 B
STAR
smb-brain-het-mm-1_trimmed_stats.txt
1.81 kB
smb-brain-het-mm-1_trimmed.bam
177.52 MB
smb-brain-het-mm-1_trimmed.bam.bai
3.56 MB
smb-brain-het-mm-1_trimmed_SJ.out.tab
520.08 kB
smb-brain-het-mm-1_trimmed.bw
13.06 kB
smb-brain-het-mm-1_trimmed_unmapped.out.mate1.fastq.gz
22.44 MB
Cutadapt (single-end)
report.txt
685 B
fastqc
Directory
smb-brain-het-mm-1_trimmed.fastq.gz
104.14 MB
smb-brain-het-mm-1_trimmed_fastqc.zip
393.33 kB
iCount summary
smb-brain-wt-mm-1_trimmed_single_summary_subtype.tsv
657 B
smb-brain-wt-mm-1_trimmed_single_summary_gene.tsv
1.20 MB
smb-brain-wt-mm-1_trimmed_single_summary_type.tsv
273 B
iCount xlsites
smb-brain-wt-mm-3_trimmed_skipped.bam
2.87 kB
smb-brain-wt-mm-3_trimmed_single.bedgraph
73.64 MB
smb-brain-wt-mm-3_trimmed_singleAndMulti.bed.gz
21.52 MB
smb-brain-wt-mm-3_trimmed_single.bed.gz
15.40 MB
STAR
smb-brain-wt-mm-3_trimmed.bam
373.05 MB
smb-brain-wt-mm-3_trimmed_unmapped.out.mate1.fastq.gz
50.36 MB
smb-brain-wt-mm-3_trimmed.bam.bai
3.33 MB
smb-brain-wt-mm-3_trimmed_stats.txt
1.81 kB
smb-brain-wt-mm-3_trimmed.bw
18.82 kB
smb-brain-wt-mm-3_trimmed_SJ.out.tab
958.53 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
684 B
smb-brain-wt-mm-3_trimmed.fastq.gz
216.36 MB
smb-brain-wt-mm-3_trimmed_fastqc.zip
392.36 kB
iCount summary
smb-brain-ko-mm-3_trimmed_single_summary_gene.tsv
1.12 MB
smb-brain-ko-mm-3_trimmed_single_summary_type.tsv
270 B
smb-brain-ko-mm-3_trimmed_single_summary_subtype.tsv
653 B
Cutadapt (single-end)
fastqc
Directory
smb-brain-wt-mm-1_trimmed.fastq.gz
165.51 MB
report.txt
684 B
smb-brain-wt-mm-1_trimmed_fastqc.zip
391.17 kB
iCount summary
smb-brain-ko-mm-1_trimmed_single_summary_type.tsv
270 B
smb-brain-ko-mm-1_trimmed_single_summary_subtype.tsv
657 B
smb-brain-ko-mm-1_trimmed_single_summary_gene.tsv
1.18 MB
iCount xlsites
smb-brain-ko-mm-3_trimmed_single.bed.gz
8.29 MB
smb-brain-ko-mm-3_trimmed_skipped.bam
2.25 kB
smb-brain-ko-mm-3_trimmed_singleAndMulti.bed.gz
11.44 MB
smb-brain-ko-mm-3_trimmed_single.bedgraph
38.90 MB
iCount RNA-maps
results.tar.gz
2.86 MB
STAR
smb-brain-ko-mm-3_trimmed_unmapped.out.mate1.fastq.gz
24.06 MB
smb-brain-ko-mm-3_trimmed.bam.bai
3.62 MB
smb-brain-ko-mm-3_trimmed.bam
227.40 MB
smb-brain-ko-mm-3_trimmed_stats.txt
1.81 kB
smb-brain-ko-mm-3_trimmed_SJ.out.tab
508.62 kB
smb-brain-ko-mm-3_trimmed.bw
16.39 kB
STAR
smb-brain-ko-mm-1_trimmed.bam
272.66 MB
smb-brain-ko-mm-1_trimmed.bam.bai
3.58 MB
smb-brain-ko-mm-1_trimmed_unmapped.out.mate1.fastq.gz
28.56 MB
smb-brain-ko-mm-1_trimmed_stats.txt
1.81 kB
smb-brain-ko-mm-1_trimmed.bw
18.49 kB
smb-brain-ko-mm-1_trimmed_SJ.out.tab
590.71 kB
Cutadapt (single-end)
fastqc
Directory
smb-brain-wt-mm-2_trimmed.fastq.gz
106.43 MB
report.txt
684 B
smb-brain-wt-mm-2_trimmed_fastqc.zip
389.45 kB
Cutadapt (single-end)
report.txt
684 B
fastqc
Directory
smb-brain-ko-mm-3_trimmed_fastqc.zip
405.80 kB
smb-brain-ko-mm-3_trimmed.fastq.gz
114.78 MB
iCount xlsites
smb-brain-wt-mm-2_trimmed_skipped.bam
1.90 kB
smb-brain-wt-mm-2_trimmed_singleAndMulti.bed.gz
11.01 MB
smb-brain-wt-mm-2_trimmed_single.bedgraph
38.56 MB
smb-brain-wt-mm-2_trimmed_single.bed.gz
8.20 MB
STAR
smb-brain-wt-mm-2_trimmed_unmapped.out.mate1.fastq.gz
23.34 MB
smb-brain-wt-mm-2_trimmed.bam.bai
3.52 MB
smb-brain-wt-mm-2_trimmed.bam
179.18 MB
smb-brain-wt-mm-2_trimmed.bw
13.53 kB
smb-brain-wt-mm-2_trimmed_stats.txt
1.81 kB
smb-brain-wt-mm-2_trimmed_SJ.out.tab
523.70 kB
iCount RNA-maps
results.tar.gz
3.08 MB
iCount summary
smb-brain-het-mm-2_trimmed_single_summary_type.tsv
272 B
smb-brain-het-mm-2_trimmed_single_summary_gene.tsv
1.15 MB
smb-brain-het-mm-2_trimmed_single_summary_subtype.tsv
653 B
STAR
smb-brain-het-mm-2_trimmed_unmapped.out.mate1.fastq.gz
27.73 MB
smb-brain-het-mm-2_trimmed.bam.bai
3.58 MB
smb-brain-het-mm-2_trimmed.bam
216.45 MB
smb-brain-het-mm-2_trimmed_stats.txt
1.81 kB
smb-brain-het-mm-2_trimmed_SJ.out.tab
579.50 kB
smb-brain-het-mm-2_trimmed.bw
14.19 kB
iCount RNA-maps
results.tar.gz
7.08 MB
iCount RNA-maps
results.tar.gz
2.83 MB
iCount RNA-maps
results.tar.gz
3.68 MB
iCount xlsites
smb-brain-het-mm-3_trimmed_single.bed.gz
15.90 MB
smb-brain-het-mm-3_trimmed_skipped.bam
3.37 kB
smb-brain-het-mm-3_trimmed_single.bedgraph
75.95 MB
smb-brain-het-mm-3_trimmed_singleAndMulti.bed.gz
21.59 MB
iCount RNA-maps
results.tar.gz
4.73 MB
Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-ko-mm-1_trimmed.fastq.gz
318.89 MB
report.txt
690 B
smb-spinal-cord-ko-mm-1_trimmed_fastqc.zip
393.78 kB
FASTQ file (single-end)
merge_spinalcord.fastq.gz
2.78 GB
fastqc
Directory
stderr.txt
935 B
merge_spinalcord_fastqc.zip
501.43 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
975 B
smb-brain-het-mm-2.fastq.gz
121.31 MB
smb-brain-het-mm-2_fastqc.zip
387.42 kB
iCount summary
smb-brain-wt-mm-2_trimmed_single_summary_type.tsv
271 B
smb-brain-wt-mm-2_trimmed_single_summary_subtype.tsv
653 B
smb-brain-wt-mm-2_trimmed_single_summary_gene.tsv
1.12 MB
FASTQ file (single-end)
fastqc
Directory
smb-brain-het-mm-3_fastqc.zip
385.62 kB
smb-brain-het-mm-3.fastq.gz
211.18 MB
stderr.txt
975 B
FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-het-mm-3.fastq.gz
284.01 MB
smb-spinal-cord-het-mm-3_fastqc.zip
385.75 kB
stderr.txt
1.07 kB
iCount summary
smb-brain-wt-mm-2_trimmed_single_summary_type.tsv
410 B
smb-brain-wt-mm-2_trimmed_single_summary_gene.tsv
406.97 kB
smb-brain-wt-mm-2_trimmed_single_summary_subtype.tsv
835 B
iCount RNA-maps
results.tar.gz
381.77 kB
iCount RNA-maps
results.tar.gz
341.52 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
691 B
smb-spinal-cord-het-mm-3_trimmed_fastqc.zip
392.64 kB
smb-spinal-cord-het-mm-3_trimmed.fastq.gz
289.29 MB
iCount xlsites
smb-spinal-cord-wt-mm-1_trimmed_singleAndMulti.bed.gz
29.02 MB
smb-spinal-cord-wt-mm-1_trimmed_single.bedgraph
102.71 MB
smb-spinal-cord-wt-mm-1_trimmed_single.bed.gz
21.27 MB
smb-spinal-cord-wt-mm-1_trimmed_skipped.bam
4.19 kB
Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
smb-brain-wt-mm-3_trimmed.fastq.gz
136.82 kB
smb-brain-wt-mm-3_trimmed_fastqc.zip
407.77 kB
iCount xlsites
smb-spinal-cord-het-mm-1_trimmed_skipped.bam
2.55 kB
smb-spinal-cord-het-mm-1_trimmed_single.bed.gz
8.04 MB
smb-spinal-cord-het-mm-1_trimmed_singleAndMulti.bed.gz
10.88 MB
smb-spinal-cord-het-mm-1_trimmed_single.bedgraph
37.83 MB
Paraclu
peaks.bed.gz
35 B
STAR
smb-brain-het-mm-3_trimmed_stats.txt
1.81 kB
smb-brain-het-mm-3_trimmed.bam.bai
3.35 MB
smb-brain-het-mm-3_trimmed_SJ.out.tab
734.79 kB
smb-brain-het-mm-3_trimmed_unmapped.out.mate1.fastq.gz
48.34 MB
smb-brain-het-mm-3_trimmed.bw
19.13 kB
smb-brain-het-mm-3_trimmed.bam
364.15 MB
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-3_fastqc.zip
395.96 kB
stderr.txt
236 B
smb-brain-wt-mm-3.fastq.gz
135.33 kB
FASTQ file (single-end)
demux_nomatch.fastq.gz
97.08 MB
fastqc
Directory
stderr.txt
875 B
demux_nomatch_fastqc.zip
477.77 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
955 B
smb-brain-wt-mm-2_fastqc.zip
419.87 kB
smb-brain-wt-mm-2.fastq.gz
626.82 kB
STAR
smb-brain-wt-mm-3_trimmed_unmapped.out.mate1.fastq.gz
18.13 kB
smb-brain-wt-mm-3_trimmed.bam.bai
1.36 MB
smb-brain-wt-mm-3_trimmed_SJ.out.tab
734 B
smb-brain-wt-mm-3_trimmed.bam
313.95 kB
smb-brain-wt-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-3_trimmed.bw
4.31 kB
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-1.fastq.gz
342.74 kB
stderr.txt
571 B
smb-brain-wt-mm-1_fastqc.zip
444.30 kB
Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
smb-brain-wt-mm-2_trimmed.fastq.gz
635.25 kB
smb-brain-wt-mm-2_trimmed_fastqc.zip
419.40 kB
Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
348.04 kB
iCount xlsites
smb-brain-wt-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-3_trimmed_reads_single.bed.gz
22.29 kB
smb-brain-wt-mm-3_trimmed_single.bed.gz
21.92 kB
smb-brain-wt-mm-3_trimmed_singleAndMulti.bed.gz
38.11 kB
smb-brain-wt-mm-3_trimmed_single.bedgraph
74.78 kB
iCount summary
smb-brain-wt-mm-3_trimmed_single_summary_subtype.tsv
695 B
smb-brain-wt-mm-3_trimmed_single_summary_gene.tsv
139.92 kB
smb-brain-wt-mm-3_trimmed_single_summary_type.tsv
403 B
iCount RNA-maps
results.tar.gz
301.49 kB
Cutadapt (single-end)
fastqc
Directory
smb-brain-wt-mm-1_trimmed_fastqc.zip
448.19 kB
smb-brain-wt-mm-1_trimmed.fastq.gz
346.93 kB
report.txt
683 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-3.fastq.gz
455.03 kB
smb-brain-ko-mm-3_fastqc.zip
442.45 kB
stderr.txt
763 B

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
97.08 MB
fastqc
Directory
stderr.txt
875 B
demux_nomatch_fastqc.zip
477.77 kB

Smb_brain_WT_Mm_2

STAR
smb-brain-wt-mm-2_trimmed.bam.bai
1.68 MB
smb-brain-wt-mm-2_trimmed_unmapped.out.mate1.fastq.gz
84.03 kB
smb-brain-wt-mm-2_trimmed.bam
1.45 MB
smb-brain-wt-mm-2_trimmed.bw
4.50 kB
smb-brain-wt-mm-2_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-2_trimmed_SJ.out.tab
2.27 kB
iCount xlsites
smb-brain-wt-mm-2_trimmed_single.bed.gz
91.37 kB
smb-brain-wt-mm-2_trimmed_singleAndMulti.bed.gz
176.81 kB
smb-brain-wt-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-2_trimmed_reads_single.bed.gz
93.44 kB
smb-brain-wt-mm-2_trimmed_single.bedgraph
341.71 kB
Paraclu
peaks.bed.gz
61 B
iCount summary
smb-brain-wt-mm-2_trimmed_single_summary_type.tsv
410 B
smb-brain-wt-mm-2_trimmed_single_summary_gene.tsv
406.97 kB
smb-brain-wt-mm-2_trimmed_single_summary_subtype.tsv
835 B
iCount RNA-maps
results.tar.gz
381.77 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
955 B
smb-brain-wt-mm-2_fastqc.zip
419.87 kB
smb-brain-wt-mm-2.fastq.gz
626.82 kB
Cutadapt (single-end)
report.txt
683 B
fastqc
Directory
smb-brain-wt-mm-2_trimmed.fastq.gz
635.25 kB
smb-brain-wt-mm-2_trimmed_fastqc.zip
419.40 kB

Smb_brain_WT_Mm_1

STAR
smb-brain-wt-mm-1_trimmed.bam.bai
1.50 MB
smb-brain-wt-mm-1_trimmed_SJ.out.tab
1.75 kB
smb-brain-wt-mm-1_trimmed.bam
825.17 kB
smb-brain-wt-mm-1_trimmed.bw
4.35 kB
smb-brain-wt-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-1_trimmed_unmapped.out.mate1.fastq.gz
62.33 kB
iCount summary
smb-brain-wt-mm-1_trimmed_single_summary_type.tsv
403 B
smb-brain-wt-mm-1_trimmed_single_summary_gene.tsv
282.53 kB
smb-brain-wt-mm-1_trimmed_single_summary_subtype.tsv
827 B
iCount xlsites
smb-brain-wt-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-1_trimmed_singleAndMulti.bed.gz
92.66 kB
smb-brain-wt-mm-1_trimmed_single.bed.gz
48.37 kB
smb-brain-wt-mm-1_trimmed_single.bedgraph
173.02 kB
smb-brain-wt-mm-1_trimmed_reads_single.bed.gz
49.34 kB
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-1.fastq.gz
342.74 kB
stderr.txt
571 B
smb-brain-wt-mm-1_fastqc.zip
444.30 kB
Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
348.04 kB
Cutadapt (single-end)
fastqc
Directory
smb-brain-wt-mm-1_trimmed_fastqc.zip
448.19 kB
smb-brain-wt-mm-1_trimmed.fastq.gz
346.93 kB
report.txt
683 B

Smb_brain_KO_Mm_2

Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
323.22 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
683 B
smb-brain-ko-mm-2_trimmed.fastq.gz
330.41 kB
smb-brain-ko-mm-2_trimmed_fastqc.zip
417.14 kB
STAR
smb-brain-ko-mm-2_trimmed_unmapped.out.mate1.fastq.gz
36.52 kB
smb-brain-ko-mm-2_trimmed.bam.bai
1.49 MB
smb-brain-ko-mm-2_trimmed.bam
792.09 kB
smb-brain-ko-mm-2_trimmed.bw
4.46 kB
smb-brain-ko-mm-2_trimmed_SJ.out.tab
1.49 kB
smb-brain-ko-mm-2_trimmed_stats.txt
1.78 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
523 B
smb-brain-ko-mm-2.fastq.gz
326.10 kB
smb-brain-ko-mm-2_fastqc.zip
417.09 kB
iCount summary
smb-brain-ko-mm-2_trimmed_single_summary_type.tsv
406 B
smb-brain-ko-mm-2_trimmed_single_summary_subtype.tsv
763 B
smb-brain-ko-mm-2_trimmed_single_summary_gene.tsv
255.12 kB
iCount xlsites
smb-brain-ko-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-2_trimmed_singleAndMulti.bed.gz
89.93 kB
smb-brain-ko-mm-2_trimmed_reads_single.bed.gz
51.64 kB
smb-brain-ko-mm-2_trimmed_single.bedgraph
181.91 kB
smb-brain-ko-mm-2_trimmed_single.bed.gz
50.53 kB

Smb_brain_HET_Mm_3

FASTQ file (single-end)
smb-brain-het-mm-3.fastq.gz
412.75 kB
stderr.txt
681 B
fastqc
Directory
smb-brain-het-mm-3_fastqc.zip
554.41 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
684 B
smb-brain-het-mm-3_trimmed_fastqc.zip
555.55 kB
smb-brain-het-mm-3_trimmed.fastq.gz
417.32 kB
iCount summary
smb-brain-het-mm-3_trimmed_single_summary_subtype.tsv
700 B
smb-brain-het-mm-3_trimmed_single_summary_gene.tsv
275.53 kB
smb-brain-het-mm-3_trimmed_single_summary_type.tsv
408 B
Paraclu
peaks.bed.gz
35 B
STAR
smb-brain-het-mm-3_trimmed_unmapped.out.mate1.fastq.gz
149.90 kB
smb-brain-het-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-3_trimmed_SJ.out.tab
3.52 kB
smb-brain-het-mm-3_trimmed.bam.bai
1.46 MB
smb-brain-het-mm-3_trimmed.bw
4.37 kB
smb-brain-het-mm-3_trimmed.bam
846.18 kB
iCount xlsites
smb-brain-het-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-3_trimmed_singleAndMulti.bed.gz
77.35 kB
smb-brain-het-mm-3_trimmed_reads_single.bed.gz
45.34 kB
smb-brain-het-mm-3_trimmed_single.bed.gz
44.58 kB
smb-brain-het-mm-3_trimmed_single.bedgraph
158.88 kB
iCount RNA-maps
results.tar.gz
341.52 kB

Smb_brain_HET_Mm_2

FASTQ file (single-end)
fastqc
Directory
smb-brain-het-mm-2.fastq.gz
346.17 kB
stderr.txt
583 B
smb-brain-het-mm-2_fastqc.zip
414.01 kB
iCount RNA-maps
results.tar.gz
321.74 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
684 B
smb-brain-het-mm-2_trimmed.fastq.gz
350.60 kB
smb-brain-het-mm-2_trimmed_fastqc.zip
413.23 kB
iCount summary
smb-brain-het-mm-2_trimmed_single_summary_subtype.tsv
765 B
smb-brain-het-mm-2_trimmed_single_summary_type.tsv
405 B
smb-brain-het-mm-2_trimmed_single_summary_gene.tsv
293.90 kB
Paraclu
peaks.bed.gz
35 B
STAR
smb-brain-het-mm-2_trimmed.bam.bai
1.50 MB
smb-brain-het-mm-2_trimmed_unmapped.out.mate1.fastq.gz
36.65 kB
smb-brain-het-mm-2_trimmed.bam
781.89 kB
smb-brain-het-mm-2_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-2_trimmed_SJ.out.tab
1.16 kB
smb-brain-het-mm-2_trimmed.bw
4.40 kB
iCount xlsites
smb-brain-het-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-2_trimmed_single.bedgraph
199.56 kB
smb-brain-het-mm-2_trimmed_singleAndMulti.bed.gz
96.21 kB
smb-brain-het-mm-2_trimmed_single.bed.gz
55.16 kB
smb-brain-het-mm-2_trimmed_reads_single.bed.gz
56.38 kB

Smb_brain_HET_Mm_1

iCount summary
smb-brain-het-mm-1_trimmed_single_summary_type.tsv
398 B
smb-brain-het-mm-1_trimmed_single_summary_gene.tsv
51.34 kB
smb-brain-het-mm-1_trimmed_single_summary_subtype.tsv
686 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-het-mm-1.fastq.gz
60.72 kB
smb-brain-het-mm-1_fastqc.zip
506.83 kB
stderr.txt
94 B
Cutadapt (single-end)
smb-brain-het-mm-1_trimmed.fastq.gz
61.01 kB
fastqc
Directory
report.txt
684 B
smb-brain-het-mm-1_trimmed_fastqc.zip
508.13 kB
iCount RNA-maps
results.tar.gz
251.54 kB
Paraclu
peaks.bed.gz
35 B
STAR
smb-brain-het-mm-1_trimmed_unmapped.out.mate1.fastq.gz
9.91 kB
smb-brain-het-mm-1_trimmed_SJ.out.tab
880 B
smb-brain-het-mm-1_trimmed.bam.bai
1.27 MB
smb-brain-het-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-1_trimmed.bw
4.30 kB
smb-brain-het-mm-1_trimmed.bam
206.38 kB
iCount xlsites
smb-brain-het-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-1_trimmed_single.bed.gz
6.47 kB
smb-brain-het-mm-1_trimmed_reads_single.bed.gz
6.57 kB
smb-brain-het-mm-1_trimmed_singleAndMulti.bed.gz
10.92 kB
smb-brain-het-mm-1_trimmed_single.bedgraph
21.22 kB

Smb_brain_WT_Mm_3

Paraclu
peaks.bed.gz
35 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-3.fastq.gz
135.33 kB
stderr.txt
236 B
smb-brain-wt-mm-3_fastqc.zip
395.96 kB
iCount RNA-maps
results.tar.gz
301.49 kB
Cutadapt (single-end)
smb-brain-wt-mm-3_trimmed.fastq.gz
136.82 kB
fastqc
Directory
smb-brain-wt-mm-3_trimmed_fastqc.zip
407.77 kB
report.txt
683 B
STAR
smb-brain-wt-mm-3_trimmed.bam.bai
1.36 MB
smb-brain-wt-mm-3_trimmed_unmapped.out.mate1.fastq.gz
18.13 kB
smb-brain-wt-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-3_trimmed.bw
4.31 kB
smb-brain-wt-mm-3_trimmed.bam
313.95 kB
smb-brain-wt-mm-3_trimmed_SJ.out.tab
734 B
iCount xlsites
smb-brain-wt-mm-3_trimmed_single.bed.gz
21.92 kB
smb-brain-wt-mm-3_trimmed_single.bedgraph
74.78 kB
smb-brain-wt-mm-3_trimmed_singleAndMulti.bed.gz
38.11 kB
smb-brain-wt-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-3_trimmed_reads_single.bed.gz
22.29 kB
iCount summary
smb-brain-wt-mm-3_trimmed_single_summary_subtype.tsv
695 B
smb-brain-wt-mm-3_trimmed_single_summary_gene.tsv
139.92 kB
smb-brain-wt-mm-3_trimmed_single_summary_type.tsv
403 B

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
97.08 MB
fastqc
Directory
demux_nomatch_fastqc.zip
477.77 kB
stderr.txt
875 B

Smb_brain_WT_Mm_1

iCount RNA-maps
results.tar.gz
348.04 kB
Paraclu
peaks.bed.gz
35 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-1.fastq.gz
342.74 kB
smb-brain-wt-mm-1_fastqc.zip
444.30 kB
stderr.txt
571 B
Cutadapt (single-end)
smb-brain-wt-mm-1_trimmed.fastq.gz
346.93 kB
fastqc
Directory
smb-brain-wt-mm-1_trimmed_fastqc.zip
448.19 kB
report.txt
683 B
STAR
smb-brain-wt-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-wt-mm-1_trimmed.bam
825.17 kB
smb-brain-wt-mm-1_trimmed.bam.bai
1.50 MB
smb-brain-wt-mm-1_trimmed_SJ.out.tab
1.75 kB
smb-brain-wt-mm-1_trimmed_unmapped.out.mate1.fastq.gz
62.33 kB
smb-brain-wt-mm-1_trimmed.bw
4.35 kB
iCount xlsites
smb-brain-wt-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-wt-mm-1_trimmed_single.bed.gz
48.37 kB
smb-brain-wt-mm-1_trimmed_reads_single.bed.gz
49.34 kB
smb-brain-wt-mm-1_trimmed_singleAndMulti.bed.gz
92.66 kB
smb-brain-wt-mm-1_trimmed_single.bedgraph
173.02 kB
iCount summary
smb-brain-wt-mm-1_trimmed_single_summary_subtype.tsv
827 B
smb-brain-wt-mm-1_trimmed_single_summary_type.tsv
403 B
smb-brain-wt-mm-1_trimmed_single_summary_gene.tsv
282.53 kB

Smb_brain_KO_Mm_3

Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
332.16 kB
iCount summary
smb-brain-ko-mm-3_trimmed_single_summary_gene.tsv
304.24 kB
smb-brain-ko-mm-3_trimmed_single_summary_type.tsv
407 B
smb-brain-ko-mm-3_trimmed_single_summary_subtype.tsv
824 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
763 B
smb-brain-ko-mm-3.fastq.gz
455.03 kB
smb-brain-ko-mm-3_fastqc.zip
442.45 kB
Cutadapt (single-end)
smb-brain-ko-mm-3_trimmed_fastqc.zip
447.84 kB
report.txt
683 B
fastqc
Directory
smb-brain-ko-mm-3_trimmed.fastq.gz
461.74 kB
STAR
smb-brain-ko-mm-3_trimmed_unmapped.out.mate1.fastq.gz
48.43 kB
smb-brain-ko-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-ko-mm-3_trimmed.bam.bai
1.55 MB
smb-brain-ko-mm-3_trimmed.bam
1.24 MB
smb-brain-ko-mm-3_trimmed.bw
4.48 kB
smb-brain-ko-mm-3_trimmed_SJ.out.tab
1.77 kB
iCount xlsites
smb-brain-ko-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-3_trimmed_single.bed.gz
64.54 kB
smb-brain-ko-mm-3_trimmed_reads_single.bed.gz
66.07 kB
smb-brain-ko-mm-3_trimmed_singleAndMulti.bed.gz
116.99 kB
smb-brain-ko-mm-3_trimmed_single.bedgraph
236.85 kB

Smb_brain_KO_Mm_2

Paraclu
peaks.bed.gz
35 B
FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-2.fastq.gz
326.10 kB
smb-brain-ko-mm-2_fastqc.zip
417.09 kB
stderr.txt
523 B
iCount RNA-maps
results.tar.gz
323.23 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
683 B
smb-brain-ko-mm-2_trimmed.fastq.gz
330.41 kB
smb-brain-ko-mm-2_trimmed_fastqc.zip
417.14 kB
STAR
smb-brain-ko-mm-2_trimmed_unmapped.out.mate1.fastq.gz
36.52 kB
smb-brain-ko-mm-2_trimmed.bam.bai
1.49 MB
smb-brain-ko-mm-2_trimmed_SJ.out.tab
1.49 kB
smb-brain-ko-mm-2_trimmed.bam
792.09 kB
smb-brain-ko-mm-2_trimmed.bw
4.46 kB
smb-brain-ko-mm-2_trimmed_stats.txt
1.78 kB
iCount xlsites
smb-brain-ko-mm-2_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-2_trimmed_reads_single.bed.gz
51.64 kB
smb-brain-ko-mm-2_trimmed_single.bedgraph
181.91 kB
smb-brain-ko-mm-2_trimmed_singleAndMulti.bed.gz
89.93 kB
smb-brain-ko-mm-2_trimmed_single.bed.gz
50.53 kB
iCount summary
smb-brain-ko-mm-2_trimmed_single_summary_gene.tsv
255.12 kB
smb-brain-ko-mm-2_trimmed_single_summary_subtype.tsv
763 B
smb-brain-ko-mm-2_trimmed_single_summary_type.tsv
406 B

Smb_brain_KO_Mm_1

Paraclu
peaks.bed.gz
35 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
284 B
smb-brain-ko-mm-1.fastq.gz
179.24 kB
smb-brain-ko-mm-1_fastqc.zip
406.44 kB
iCount RNA-maps
results.tar.gz
308.35 kB
Cutadapt (single-end)
smb-brain-ko-mm-1_trimmed.fastq.gz
181.58 kB
fastqc
Directory
report.txt
683 B
smb-brain-ko-mm-1_trimmed_fastqc.zip
400.47 kB
STAR
smb-brain-ko-mm-1_trimmed_unmapped.out.mate1.fastq.gz
20.02 kB
smb-brain-ko-mm-1_trimmed.bam.bai
1.39 MB
smb-brain-ko-mm-1_trimmed.bw
4.36 kB
smb-brain-ko-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-ko-mm-1_trimmed.bam
406.82 kB
smb-brain-ko-mm-1_trimmed_SJ.out.tab
1.64 kB
iCount xlsites
smb-brain-ko-mm-1_trimmed_single.bed.gz
29.44 kB
smb-brain-ko-mm-1_trimmed_singleAndMulti.bed.gz
50.12 kB
smb-brain-ko-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-ko-mm-1_trimmed_reads_single.bed.gz
29.89 kB
smb-brain-ko-mm-1_trimmed_single.bedgraph
101.80 kB
iCount summary
smb-brain-ko-mm-1_trimmed_single_summary_subtype.tsv
632 B
smb-brain-ko-mm-1_trimmed_single_summary_gene.tsv
199.39 kB
smb-brain-ko-mm-1_trimmed_single_summary_type.tsv
403 B

Smb_brain_HET_Mm_3

iCount summary
smb-brain-het-mm-3_trimmed_single_summary_type.tsv
408 B
smb-brain-het-mm-3_trimmed_single_summary_gene.tsv
275.53 kB
smb-brain-het-mm-3_trimmed_single_summary_subtype.tsv
700 B
Paraclu
peaks.bed.gz
35 B
FASTQ file (single-end)
smb-brain-het-mm-3.fastq.gz
412.75 kB
fastqc
Directory
stderr.txt
681 B
smb-brain-het-mm-3_fastqc.zip
554.41 kB
Cutadapt (single-end)
fastqc
Directory
smb-brain-het-mm-3_trimmed.fastq.gz
417.32 kB
report.txt
684 B
smb-brain-het-mm-3_trimmed_fastqc.zip
555.55 kB
iCount RNA-maps
results.tar.gz
341.53 kB
STAR
smb-brain-het-mm-3_trimmed.bam.bai
1.46 MB
smb-brain-het-mm-3_trimmed_unmapped.out.mate1.fastq.gz
149.90 kB
smb-brain-het-mm-3_trimmed.bam
846.18 kB
smb-brain-het-mm-3_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-3_trimmed_SJ.out.tab
3.52 kB
smb-brain-het-mm-3_trimmed.bw
4.37 kB
iCount xlsites
smb-brain-het-mm-3_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-3_trimmed_singleAndMulti.bed.gz
77.35 kB
smb-brain-het-mm-3_trimmed_single.bed.gz
44.58 kB
smb-brain-het-mm-3_trimmed_reads_single.bed.gz
45.34 kB
smb-brain-het-mm-3_trimmed_single.bedgraph
158.88 kB

Smb_brain_HET_Mm_1

iCount summary
smb-brain-het-mm-1_trimmed_single_summary_gene.tsv
51.34 kB
smb-brain-het-mm-1_trimmed_single_summary_subtype.tsv
686 B
smb-brain-het-mm-1_trimmed_single_summary_type.tsv
398 B
FASTQ file (single-end)
smb-brain-het-mm-1.fastq.gz
60.72 kB
fastqc
Directory
stderr.txt
94 B
smb-brain-het-mm-1_fastqc.zip
506.83 kB
iCount RNA-maps
results.tar.gz
251.54 kB
Cutadapt (single-end)
report.txt
684 B
smb-brain-het-mm-1_trimmed.fastq.gz
61.01 kB
fastqc
Directory
smb-brain-het-mm-1_trimmed_fastqc.zip
508.13 kB
STAR
smb-brain-het-mm-1_trimmed.bam
206.38 kB
smb-brain-het-mm-1_trimmed_unmapped.out.mate1.fastq.gz
9.91 kB
smb-brain-het-mm-1_trimmed.bam.bai
1.27 MB
smb-brain-het-mm-1_trimmed_stats.txt
1.78 kB
smb-brain-het-mm-1_trimmed.bw
4.30 kB
smb-brain-het-mm-1_trimmed_SJ.out.tab
880 B
iCount xlsites
smb-brain-het-mm-1_trimmed_singleAndMulti.bed.gz
10.92 kB
smb-brain-het-mm-1_trimmed_skipped.bam
1.41 kB
smb-brain-het-mm-1_trimmed_single.bed.gz
6.47 kB
smb-brain-het-mm-1_trimmed_reads_single.bed.gz
6.57 kB
smb-brain-het-mm-1_trimmed_single.bedgraph
21.22 kB
Paraclu
peaks.bed.gz
35 B

merge_brain.fq.gz

FASTQ file (single-end)
fastqc
Directory
merge_brain.fastq.gz
1.57 GB
stderr.txt
835 B
merge_brain_fastqc.zip
509.72 kB

merge_spinalcord.fq.gz

FASTQ file (single-end)
merge_spinalcord.fastq.gz
2.78 GB
fastqc
Directory
stderr.txt
935 B
merge_spinalcord_fastqc.zip
501.43 kB

Smb_brain_HET_Mm_3

iCount RNA-maps
results.tar.gz
3.98 MB
iCount summary
smb-brain-het-mm-3_trimmed_single_summary_type.tsv
272 B
smb-brain-het-mm-3_trimmed_single_summary_gene.tsv
1.25 MB
smb-brain-het-mm-3_trimmed_single_summary_subtype.tsv
660 B
Cutadapt (single-end)
fastqc
Directory
smb-brain-het-mm-3_trimmed.fastq.gz
213.61 MB
smb-brain-het-mm-3_trimmed_fastqc.zip
396.03 kB
report.txt
685 B
iCount xlsites
smb-brain-het-mm-3_trimmed_single.bed.gz
15.90 MB
smb-brain-het-mm-3_trimmed_skipped.bam
3.37 kB
smb-brain-het-mm-3_trimmed_single.bedgraph
75.95 MB
smb-brain-het-mm-3_trimmed_singleAndMulti.bed.gz
21.59 MB
FASTQ file (single-end)
fastqc
Directory
smb-brain-het-mm-3_fastqc.zip
385.62 kB
smb-brain-het-mm-3.fastq.gz
211.18 MB
stderr.txt
975 B
STAR
smb-brain-het-mm-3_trimmed_stats.txt
1.81 kB
smb-brain-het-mm-3_trimmed.bam.bai
3.35 MB
smb-brain-het-mm-3_trimmed_SJ.out.tab
734.79 kB
smb-brain-het-mm-3_trimmed_unmapped.out.mate1.fastq.gz
48.34 MB
smb-brain-het-mm-3_trimmed.bw
19.13 kB
smb-brain-het-mm-3_trimmed.bam
364.15 MB

Smb_brain_WT_Mm_1

FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-1.fastq.gz
163.63 MB
smb-brain-wt-mm-1_fastqc.zip
384.45 kB
stderr.txt
955 B
STAR
smb-brain-wt-mm-1_trimmed_unmapped.out.mate1.fastq.gz
36.75 MB
smb-brain-wt-mm-1_trimmed.bam
279.74 MB
smb-brain-wt-mm-1_trimmed.bw
15.80 kB
smb-brain-wt-mm-1_trimmed_SJ.out.tab
730.89 kB
smb-brain-wt-mm-1_trimmed_stats.txt
1.81 kB
smb-brain-wt-mm-1_trimmed.bam.bai
3.47 MB
iCount xlsites
smb-brain-wt-mm-1_trimmed_skipped.bam
2.26 kB
smb-brain-wt-mm-1_trimmed_single.bedgraph
58.61 MB
smb-brain-wt-mm-1_trimmed_singleAndMulti.bed.gz
16.88 MB
smb-brain-wt-mm-1_trimmed_single.bed.gz
12.33 MB
iCount summary
smb-brain-wt-mm-1_trimmed_single_summary_subtype.tsv
657 B
smb-brain-wt-mm-1_trimmed_single_summary_gene.tsv
1.20 MB
smb-brain-wt-mm-1_trimmed_single_summary_type.tsv
273 B
Cutadapt (single-end)
fastqc
Directory
smb-brain-wt-mm-1_trimmed.fastq.gz
165.51 MB
report.txt
684 B
smb-brain-wt-mm-1_trimmed_fastqc.zip
391.17 kB
iCount RNA-maps
results.tar.gz
3.68 MB

Smb_brain_WT_Mm_2

FASTQ file (single-end)
fastqc
Directory
smb-brain-wt-mm-2.fastq.gz
105.10 MB
smb-brain-wt-mm-2_fastqc.zip
383.88 kB
stderr.txt
955 B
iCount RNA-maps
results.tar.gz
2.86 MB
Cutadapt (single-end)
fastqc
Directory
smb-brain-wt-mm-2_trimmed.fastq.gz
106.43 MB
report.txt
684 B
smb-brain-wt-mm-2_trimmed_fastqc.zip
389.45 kB
iCount xlsites
smb-brain-wt-mm-2_trimmed_skipped.bam
1.90 kB
smb-brain-wt-mm-2_trimmed_singleAndMulti.bed.gz
11.01 MB
smb-brain-wt-mm-2_trimmed_single.bedgraph
38.56 MB
smb-brain-wt-mm-2_trimmed_single.bed.gz
8.20 MB
STAR
smb-brain-wt-mm-2_trimmed_unmapped.out.mate1.fastq.gz
23.34 MB
smb-brain-wt-mm-2_trimmed.bam.bai
3.52 MB
smb-brain-wt-mm-2_trimmed.bam
179.18 MB
smb-brain-wt-mm-2_trimmed.bw
13.53 kB
smb-brain-wt-mm-2_trimmed_stats.txt
1.81 kB
smb-brain-wt-mm-2_trimmed_SJ.out.tab
523.70 kB
iCount summary
smb-brain-wt-mm-2_trimmed_single_summary_type.tsv
271 B
smb-brain-wt-mm-2_trimmed_single_summary_subtype.tsv
653 B
smb-brain-wt-mm-2_trimmed_single_summary_gene.tsv
1.12 MB

Smb_brain_KO_Mm_3

FASTQ file (single-end)
fastqc
Directory
smb-brain-ko-mm-3.fastq.gz
113.31 MB
stderr.txt
955 B
smb-brain-ko-mm-3_fastqc.zip
401.66 kB
iCount RNA-maps
results.tar.gz
2.81 MB
iCount summary
smb-brain-ko-mm-3_trimmed_single_summary_gene.tsv
1.12 MB
smb-brain-ko-mm-3_trimmed_single_summary_type.tsv
270 B
smb-brain-ko-mm-3_trimmed_single_summary_subtype.tsv
653 B
iCount xlsites
smb-brain-ko-mm-3_trimmed_single.bed.gz
8.29 MB
smb-brain-ko-mm-3_trimmed_skipped.bam
2.25 kB
smb-brain-ko-mm-3_trimmed_singleAndMulti.bed.gz
11.44 MB
smb-brain-ko-mm-3_trimmed_single.bedgraph
38.90 MB
STAR
smb-brain-ko-mm-3_trimmed_unmapped.out.mate1.fastq.gz
24.06 MB
smb-brain-ko-mm-3_trimmed.bam.bai
3.62 MB
smb-brain-ko-mm-3_trimmed.bam
227.40 MB
smb-brain-ko-mm-3_trimmed_stats.txt
1.81 kB
smb-brain-ko-mm-3_trimmed_SJ.out.tab
508.62 kB
smb-brain-ko-mm-3_trimmed.bw
16.39 kB
Cutadapt (single-end)
report.txt
684 B
fastqc
Directory
smb-brain-ko-mm-3_trimmed_fastqc.zip
405.80 kB
smb-brain-ko-mm-3_trimmed.fastq.gz
114.78 MB

Smb_brain_HET_Mm_2

iCount xlsites
smb-brain-het-mm-2_trimmed_skipped.bam
2.45 kB
smb-brain-het-mm-2_trimmed_singleAndMulti.bed.gz
12.74 MB
smb-brain-het-mm-2_trimmed_single.bed.gz
9.23 MB
smb-brain-het-mm-2_trimmed_single.bedgraph
43.54 MB
Cutadapt (single-end)
fastqc
Directory
smb-brain-het-mm-2_trimmed.fastq.gz
122.81 MB
smb-brain-het-mm-2_trimmed_fastqc.zip
392.48 kB
report.txt
685 B
iCount RNA-maps
results.tar.gz
3.08 MB
iCount summary
smb-brain-het-mm-2_trimmed_single_summary_type.tsv
272 B
smb-brain-het-mm-2_trimmed_single_summary_gene.tsv
1.15 MB
smb-brain-het-mm-2_trimmed_single_summary_subtype.tsv
653 B
STAR
smb-brain-het-mm-2_trimmed_unmapped.out.mate1.fastq.gz
27.73 MB
smb-brain-het-mm-2_trimmed.bam.bai
3.58 MB
smb-brain-het-mm-2_trimmed.bam
216.45 MB
smb-brain-het-mm-2_trimmed_stats.txt
1.81 kB
smb-brain-het-mm-2_trimmed_SJ.out.tab
579.50 kB
smb-brain-het-mm-2_trimmed.bw
14.19 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
975 B
smb-brain-het-mm-2.fastq.gz
121.31 MB
smb-brain-het-mm-2_fastqc.zip
387.42 kB

Smb_brain_WT_Mm_3

iCount RNA-maps
results.tar.gz
4.39 MB
iCount summary
smb-brain-wt-mm-3_trimmed_single_summary_subtype.tsv
660 B
smb-brain-wt-mm-3_trimmed_single_summary_type.tsv
273 B
smb-brain-wt-mm-3_trimmed_single_summary_gene.tsv
1.27 MB
FASTQ file (single-end)
smb-brain-wt-mm-3.fastq.gz
213.89 MB
fastqc
Directory
stderr.txt
955 B
smb-brain-wt-mm-3_fastqc.zip
387.86 kB
iCount xlsites
smb-brain-wt-mm-3_trimmed_skipped.bam
2.87 kB
smb-brain-wt-mm-3_trimmed_single.bedgraph
73.64 MB
smb-brain-wt-mm-3_trimmed_singleAndMulti.bed.gz
21.52 MB
smb-brain-wt-mm-3_trimmed_single.bed.gz
15.40 MB
STAR
smb-brain-wt-mm-3_trimmed.bam
373.05 MB
smb-brain-wt-mm-3_trimmed_unmapped.out.mate1.fastq.gz
50.36 MB
smb-brain-wt-mm-3_trimmed.bam.bai
3.33 MB
smb-brain-wt-mm-3_trimmed_stats.txt
1.81 kB
smb-brain-wt-mm-3_trimmed.bw
18.82 kB
smb-brain-wt-mm-3_trimmed_SJ.out.tab
958.53 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
684 B
smb-brain-wt-mm-3_trimmed.fastq.gz
216.36 MB
smb-brain-wt-mm-3_trimmed_fastqc.zip
392.36 kB

Smb_spinal cord_KO_Mm_2

iCount summary
smb-spinal-cord-ko-mm-2_trimmed_single_summary_gene.tsv
1.28 MB
smb-spinal-cord-ko-mm-2_trimmed_single_summary_subtype.tsv
658 B
smb-spinal-cord-ko-mm-2_trimmed_single_summary_type.tsv
272 B
iCount xlsites
smb-spinal-cord-ko-mm-2_trimmed_single.bed.gz
15.87 MB
smb-spinal-cord-ko-mm-2_trimmed_skipped.bam
5.14 kB
smb-spinal-cord-ko-mm-2_trimmed_singleAndMulti.bed.gz
22.15 MB
smb-spinal-cord-ko-mm-2_trimmed_single.bedgraph
75.79 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.05 kB
smb-spinal-cord-ko-mm-2.fastq.gz
280.79 MB
smb-spinal-cord-ko-mm-2_fastqc.zip
391.73 kB
STAR
smb-spinal-cord-ko-mm-2_trimmed.bam.bai
3.16 MB
smb-spinal-cord-ko-mm-2_trimmed_unmapped.out.mate1.fastq.gz
71.49 MB
smb-spinal-cord-ko-mm-2_trimmed.bam
554.24 MB
smb-spinal-cord-ko-mm-2_trimmed_SJ.out.tab
1.23 MB
smb-spinal-cord-ko-mm-2_trimmed_stats.txt
1.81 kB
smb-spinal-cord-ko-mm-2_trimmed.bw
24.20 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
690 B
smb-spinal-cord-ko-mm-2_trimmed_fastqc.zip
398.62 kB
smb-spinal-cord-ko-mm-2_trimmed.fastq.gz
286.02 MB
iCount RNA-maps
results.tar.gz
4.73 MB

Smb_spinal cord_HET_Mm_1

iCount RNA-maps
results.tar.gz
3.14 MB
FASTQ file (single-end)
smb-spinal-cord-het-mm-1.fastq.gz
130.48 MB
fastqc
Directory
stderr.txt
1.07 kB
smb-spinal-cord-het-mm-1_fastqc.zip
389.36 kB
iCount summary
smb-spinal-cord-het-mm-1_trimmed_single_summary_gene.tsv
1.14 MB
smb-spinal-cord-het-mm-1_trimmed_single_summary_type.tsv
268 B
smb-spinal-cord-het-mm-1_trimmed_single_summary_subtype.tsv
651 B
STAR
smb-spinal-cord-het-mm-1_trimmed_stats.txt
1.81 kB
smb-spinal-cord-het-mm-1_trimmed.bam
238.56 MB
smb-spinal-cord-het-mm-1_trimmed.bam.bai
3.37 MB
smb-spinal-cord-het-mm-1_trimmed_unmapped.out.mate1.fastq.gz
35.61 MB
smb-spinal-cord-het-mm-1_trimmed_SJ.out.tab
777.15 kB
smb-spinal-cord-het-mm-1_trimmed.bw
12.48 kB
Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-het-mm-1_trimmed.fastq.gz
132.77 MB
smb-spinal-cord-het-mm-1_trimmed_fastqc.zip
393.31 kB
report.txt
691 B
iCount xlsites
smb-spinal-cord-het-mm-1_trimmed_skipped.bam
2.55 kB
smb-spinal-cord-het-mm-1_trimmed_single.bed.gz
8.04 MB
smb-spinal-cord-het-mm-1_trimmed_singleAndMulti.bed.gz
10.88 MB
smb-spinal-cord-het-mm-1_trimmed_single.bedgraph
37.83 MB

Smb_spinal cord_KO_Mm_3

iCount xlsites
smb-spinal-cord-ko-mm-3_trimmed_singleAndMulti.bed.gz
11.66 MB
smb-spinal-cord-ko-mm-3_trimmed_skipped.bam
3.08 kB
smb-spinal-cord-ko-mm-3_trimmed_single.bedgraph
37.86 MB
smb-spinal-cord-ko-mm-3_trimmed_single.bed.gz
8.03 MB
iCount RNA-maps
results.tar.gz
3.25 MB
FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-ko-mm-3.fastq.gz
137.77 MB
stderr.txt
1.05 kB
smb-spinal-cord-ko-mm-3_fastqc.zip
390.82 kB
STAR
smb-spinal-cord-ko-mm-3_trimmed_unmapped.out.mate1.fastq.gz
36.75 MB
smb-spinal-cord-ko-mm-3_trimmed.bam.bai
3.37 MB
smb-spinal-cord-ko-mm-3_trimmed_SJ.out.tab
934.57 kB
smb-spinal-cord-ko-mm-3_trimmed.bam
273.85 MB
smb-spinal-cord-ko-mm-3_trimmed_stats.txt
1.81 kB
smb-spinal-cord-ko-mm-3_trimmed.bw
17.74 kB
iCount summary
smb-spinal-cord-ko-mm-3_trimmed_single_summary_gene.tsv
1.14 MB
smb-spinal-cord-ko-mm-3_trimmed_single_summary_type.tsv
271 B
smb-spinal-cord-ko-mm-3_trimmed_single_summary_subtype.tsv
653 B
Cutadapt (single-end)
report.txt
690 B
fastqc
Directory
smb-spinal-cord-ko-mm-3_trimmed.fastq.gz
140.35 MB
smb-spinal-cord-ko-mm-3_trimmed_fastqc.zip
392.57 kB

Smb_spinal cord_WT_Mm_1

FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-wt-mm-1.fastq.gz
362.25 MB
smb-spinal-cord-wt-mm-1_fastqc.zip
381.92 kB
stderr.txt
1.05 kB
iCount RNA-maps
results.tar.gz
5.99 MB
iCount summary
smb-spinal-cord-wt-mm-1_trimmed_single_summary_type.tsv
271 B
smb-spinal-cord-wt-mm-1_trimmed_single_summary_subtype.tsv
656 B
smb-spinal-cord-wt-mm-1_trimmed_single_summary_gene.tsv
1.35 MB
STAR
smb-spinal-cord-wt-mm-1_trimmed.bam
658.78 MB
smb-spinal-cord-wt-mm-1_trimmed_stats.txt
1.81 kB
smb-spinal-cord-wt-mm-1_trimmed_unmapped.out.mate1.fastq.gz
95.00 MB
smb-spinal-cord-wt-mm-1_trimmed.bam.bai
3.00 MB
smb-spinal-cord-wt-mm-1_trimmed_SJ.out.tab
1.73 MB
smb-spinal-cord-wt-mm-1_trimmed.bw
22.07 kB
Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-wt-mm-1_trimmed_fastqc.zip
385.26 kB
report.txt
691 B
smb-spinal-cord-wt-mm-1_trimmed.fastq.gz
368.98 MB
iCount xlsites
smb-spinal-cord-wt-mm-1_trimmed_singleAndMulti.bed.gz
29.02 MB
smb-spinal-cord-wt-mm-1_trimmed_single.bedgraph
102.71 MB
smb-spinal-cord-wt-mm-1_trimmed_single.bed.gz
21.27 MB
smb-spinal-cord-wt-mm-1_trimmed_skipped.bam
4.19 kB

Smb_spinal cord_WT_Mm_2

iCount RNA-maps
results.tar.gz
4.58 MB
FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-wt-mm-2.fastq.gz
229.45 MB
smb-spinal-cord-wt-mm-2_fastqc.zip
384.60 kB
stderr.txt
1.05 kB
STAR
smb-spinal-cord-wt-mm-2_trimmed.bam.bai
3.25 MB
smb-spinal-cord-wt-mm-2_trimmed_unmapped.out.mate1.fastq.gz
56.94 MB
smb-spinal-cord-wt-mm-2_trimmed.bam
418.32 MB
smb-spinal-cord-wt-mm-2_trimmed_stats.txt
1.81 kB
smb-spinal-cord-wt-mm-2_trimmed_SJ.out.tab
1.19 MB
smb-spinal-cord-wt-mm-2_trimmed.bw
17.71 kB
iCount summary
smb-spinal-cord-wt-mm-2_trimmed_single_summary_subtype.tsv
658 B
smb-spinal-cord-wt-mm-2_trimmed_single_summary_type.tsv
274 B
smb-spinal-cord-wt-mm-2_trimmed_single_summary_gene.tsv
1.26 MB
iCount xlsites
smb-spinal-cord-wt-mm-2_trimmed_skipped.bam
3.99 kB
smb-spinal-cord-wt-mm-2_trimmed_singleAndMulti.bed.gz
19.69 MB
smb-spinal-cord-wt-mm-2_trimmed_single.bedgraph
69.64 MB
smb-spinal-cord-wt-mm-2_trimmed_single.bed.gz
14.58 MB
Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-wt-mm-2_trimmed.fastq.gz
233.87 MB
report.txt
690 B
smb-spinal-cord-wt-mm-2_trimmed_fastqc.zip
389.51 kB

Smb_spinal cord_HET_Mm_2

Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-het-mm-2_trimmed.fastq.gz
178.09 MB
report.txt
691 B
smb-spinal-cord-het-mm-2_trimmed_fastqc.zip
392.16 kB
FASTQ file (single-end)
fastqc
Directory
smb-spinal-cord-het-mm-2.fastq.gz
174.73 MB
smb-spinal-cord-het-mm-2_fastqc.zip
389.81 kB
stderr.txt
1.12 kB
STAR
smb-spinal-cord-het-mm-2_trimmed.bam.bai
3.37 MB
smb-spinal-cord-het-mm-2_trimmed_unmapped.out.mate1.fastq.gz
47.52 MB
smb-spinal-cord-het-mm-2_trimmed.bam
325.88 MB
smb-spinal-cord-het-mm-2_trimmed_stats.txt
1.81 kB
smb-spinal-cord-het-mm-2_trimmed.bw
16.27 kB
smb-spinal-cord-het-mm-2_trimmed_SJ.out.tab
971.41 kB
iCount RNA-maps
results.tar.gz
3.66 MB
iCount summary
smb-spinal-cord-het-mm-2_trimmed_single_summary_subtype.tsv
658 B
smb-spinal-cord-het-mm-2_trimmed_single_summary_gene.tsv
1.19 MB
smb-spinal-cord-het-mm-2_trimmed_single_summary_type.tsv
270 B
iCount xlsites
smb-spinal-cord-het-mm-2_trimmed_skipped.bam
2.65 kB
smb-spinal-cord-het-mm-2_trimmed_singleAndMulti.bed.gz
14.89 MB
smb-spinal-cord-het-mm-2_trimmed_single.bedgraph
50.40 MB
smb-spinal-cord-het-mm-2_trimmed_single.bed.gz
10.66 MB

Smb_spinal cord_KO_Mm_1

iCount summary
smb-spinal-cord-ko-mm-1_trimmed_single_summary_subtype.tsv
659 B
smb-spinal-cord-ko-mm-1_trimmed_single_summary_gene.tsv
1.33 MB
smb-spinal-cord-ko-mm-1_trimmed_single_summary_type.tsv
273 B
FASTQ file (single-end)
smb-spinal-cord-ko-mm-1.fastq.gz
312.81 MB
fastqc
Directory
stderr.txt
1.05 kB
smb-spinal-cord-ko-mm-1_fastqc.zip
390.41 kB
iCount RNA-maps
results.tar.gz
5.70 MB
iCount xlsites
smb-spinal-cord-ko-mm-1_trimmed_skipped.bam
4.53 kB
smb-spinal-cord-ko-mm-1_trimmed_single.bed.gz
18.37 MB
smb-spinal-cord-ko-mm-1_trimmed_singleAndMulti.bed.gz
25.26 MB
smb-spinal-cord-ko-mm-1_trimmed_single.bedgraph
88.55 MB
STAR
smb-spinal-cord-ko-mm-1_trimmed.bam.bai
3.02 MB
smb-spinal-cord-ko-mm-1_trimmed_unmapped.out.mate1.fastq.gz
79.04 MB
smb-spinal-cord-ko-mm-1_trimmed_SJ.out.tab
1.65 MB
smb-spinal-cord-ko-mm-1_trimmed_stats.txt
1.81 kB
smb-spinal-cord-ko-mm-1_trimmed.bw
26.62 kB
smb-spinal-cord-ko-mm-1_trimmed.bam
621.88 MB
Cutadapt (single-end)
fastqc
Directory
smb-spinal-cord-ko-mm-1_trimmed.fastq.gz
318.89 MB
report.txt
690 B
smb-spinal-cord-ko-mm-1_trimmed_fastqc.zip
393.78 kB