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Folder iconDyskerin_Chiara

Federico Agostini
Aug. 1, 2018
DKC1_and_GAR1_iCLIP

GAR1_U2OS_PARPi_20180504_JU

iCount summary
demux_NNNNCAGAANNN_trimmed_single_summary.tsv_summary_type.tsv
273 B
demux_NNNNCAGAANNN_trimmed_single_summary.tsv_summary_subtype.tsv
658 B
demux_NNNNCAGAANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.29 MB
iCount peaks
demux_NNNNCAGAANNN_trimmed_single_peaks.bedgraph
921.49 kB
demux_NNNNCAGAANNN_trimmed_single_scores.tsv.gz
5.12 MB
demux_NNNNCAGAANNN_trimmed_single_peaks.bed.gz
282.15 kB
iCount xlsites
demux_NNNNCAGAANNN_trimmed_skipped.bam
4.59 kB
demux_NNNNCAGAANNN_trimmed_single.bed.gz
6.11 MB
demux_NNNNCAGAANNN_trimmed_singleAndMulti.bed.gz
12.71 MB
demux_NNNNCAGAANNN_trimmed_single.bedgraph
27.27 MB
STAR
demux_NNNNCAGAANNN_trimmed_unmapped.out.mate1.fastq.gz
70.24 MB
demux_NNNNCAGAANNN_trimmed.bam
1.02 GB
demux_NNNNCAGAANNN_trimmed_SJ.out.tab
1.03 MB
demux_NNNNCAGAANNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAANNN_trimmed.bam.bai
3.91 MB
demux_NNNNCAGAANNN_trimmed.bw
14.92 MB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNCAGAANNN_trimmed.fastq.gz
381.67 MB
demux_NNNNCAGAANNN_trimmed_fastqc.zip
492.99 kB
report.txt
686 B
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAANNN.fastq.gz
383.53 MB
demux_NNNNCAGAANNN_fastqc.zip
512.16 kB
stderr.txt
975 B

IgG (GAR1)_U2OS_no_UV_20180504_JU

iCount summary
demux_NNNNTCGCCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNTCGCCNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNTCGCCNNN_trimmed_single_summary.tsv_summary_gene.tsv
466.04 kB
iCount peaks
demux_NNNNTCGCCNNN_trimmed_single_peaks.bedgraph
64.42 kB
demux_NNNNTCGCCNNN_trimmed_single_peaks.bed.gz
25.89 kB
demux_NNNNTCGCCNNN_trimmed_single_scores.tsv.gz
301.35 kB
iCount xlsites
demux_NNNNTCGCCNNN_trimmed_skipped.bam
3.16 kB
demux_NNNNTCGCCNNN_trimmed_singleAndMulti.bed.gz
641.55 kB
demux_NNNNTCGCCNNN_trimmed_single.bedgraph
899.81 kB
demux_NNNNTCGCCNNN_trimmed_single.bed.gz
230.54 kB
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
demux_NNNNTCGCCNNN_trimmed.fastq.gz
8.42 MB
demux_NNNNTCGCCNNN_trimmed_fastqc.zip
480.93 kB
STAR
demux_NNNNTCGCCNNN_trimmed.bam
26.31 MB
demux_NNNNTCGCCNNN_trimmed_unmapped.out.mate1.fastq.gz
3.27 MB
demux_NNNNTCGCCNNN_trimmed.bam.bai
2.20 MB
demux_NNNNTCGCCNNN_trimmed.bw
617.11 kB
demux_NNNNTCGCCNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGCCNNN_trimmed_SJ.out.tab
96.58 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGCCNNN.fastq.gz
9.20 MB
stderr.txt
975 B
demux_NNNNTCGCCNNN_fastqc.zip
473.24 kB

DKC1_U2OS_PARPi_20180504_JU

iCount summary
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.64 MB
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_subtype.tsv
664 B
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_type.tsv
274 B
iCount peaks
demux_NNNNATCCANNN_trimmed_single_peaks.bed.gz
3.90 MB
demux_NNNNATCCANNN_trimmed_single_peaks.bedgraph
17.73 MB
demux_NNNNATCCANNN_trimmed_single_scores.tsv.gz
18.68 MB
iCount xlsites
demux_NNNNATCCANNN_trimmed_single.bed.gz
24.58 MB
demux_NNNNATCCANNN_trimmed_singleAndMulti.bed.gz
43.23 MB
demux_NNNNATCCANNN_trimmed_single.bedgraph
117.62 MB
demux_NNNNATCCANNN_trimmed_skipped.bam
8.95 kB
STAR
demux_NNNNATCCANNN_trimmed.bam
1.29 GB
demux_NNNNATCCANNN_trimmed.bam.bai
3.20 MB
demux_NNNNATCCANNN_trimmed_stats.txt
1.81 kB
demux_NNNNATCCANNN_trimmed_SJ.out.tab
4.20 MB
demux_NNNNATCCANNN_trimmed.bw
32.61 MB
demux_NNNNATCCANNN_trimmed_unmapped.out.mate1.fastq.gz
119.71 MB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNATCCANNN_trimmed.fastq.gz
529.59 MB
demux_NNNNATCCANNN_trimmed_fastqc.zip
426.38 kB
report.txt
686 B
Reads (single-end)
demux_NNNNATCCANNN.fastq.gz
532.72 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNATCCANNN_fastqc.zip
450.37 kB

GAR1_U2OS_UV_20180504_JU

iCount summary
demux_NNNNTATGANNN_trimmed_single_summary.tsv_summary_type.tsv
275 B
demux_NNNNTATGANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.29 MB
demux_NNNNTATGANNN_trimmed_single_summary.tsv_summary_subtype.tsv
659 B
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNTATGANNN_trimmed.fastq.gz
403.57 MB
demux_NNNNTATGANNN_trimmed_fastqc.zip
490.79 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTATGANNN.fastq.gz
405.76 MB
stderr.txt
975 B
demux_NNNNTATGANNN_fastqc.zip
514.62 kB
iCount peaks
demux_NNNNTATGANNN_trimmed_single_peaks.bedgraph
921.48 kB
demux_NNNNTATGANNN_trimmed_single_scores.tsv.gz
5.36 MB
demux_NNNNTATGANNN_trimmed_single_peaks.bed.gz
281.36 kB
iCount xlsites
demux_NNNNTATGANNN_trimmed_skipped.bam
4.81 kB
demux_NNNNTATGANNN_trimmed_single.bed.gz
6.44 MB
demux_NNNNTATGANNN_trimmed_singleAndMulti.bed.gz
13.27 MB
demux_NNNNTATGANNN_trimmed_single.bedgraph
28.77 MB
STAR
demux_NNNNTATGANNN_trimmed_unmapped.out.mate1.fastq.gz
74.91 MB
demux_NNNNTATGANNN_trimmed.bam.bai
3.95 MB
demux_NNNNTATGANNN_trimmed_SJ.out.tab
1.06 MB
demux_NNNNTATGANNN_trimmed.bam
1.11 GB
demux_NNNNTATGANNN_trimmed.bw
15.51 MB
demux_NNNNTATGANNN_trimmed_stats.txt
1.81 kB

IgG (DKC1)_U2OS_no_UV_20180504_JU

iCount summary
demux_NNNNGGAGCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
641 B
demux_NNNNGGAGCNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNGGAGCNNN_trimmed_single_summary.tsv_summary_gene.tsv
591.73 kB
iCount peaks
demux_NNNNGGAGCNNN_trimmed_single_peaks.bed.gz
28.35 kB
demux_NNNNGGAGCNNN_trimmed_single_peaks.bedgraph
70.24 kB
demux_NNNNGGAGCNNN_trimmed_single_scores.tsv.gz
502.54 kB
iCount xlsites
demux_NNNNGGAGCNNN_trimmed_skipped.bam
3.28 kB
demux_NNNNGGAGCNNN_trimmed_single.bed.gz
443.17 kB
demux_NNNNGGAGCNNN_trimmed_singleAndMulti.bed.gz
927.39 kB
demux_NNNNGGAGCNNN_trimmed_single.bedgraph
1.76 MB
STAR
demux_NNNNGGAGCNNN_trimmed.bam.bai
2.49 MB
demux_NNNNGGAGCNNN_trimmed_unmapped.out.mate1.fastq.gz
3.56 MB
demux_NNNNGGAGCNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGGAGCNNN_trimmed.bw
1.03 MB
demux_NNNNGGAGCNNN_trimmed.bam
27.08 MB
demux_NNNNGGAGCNNN_trimmed_SJ.out.tab
150.54 kB
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
demux_NNNNGGAGCNNN_trimmed.fastq.gz
10.38 MB
demux_NNNNGGAGCNNN_trimmed_fastqc.zip
466.79 kB
Reads (single-end)
demux_NNNNGGAGCNNN.fastq.gz
10.98 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNGGAGCNNN_fastqc.zip
465.21 kB

IgG (GAR1)_U2OS_PARPi_20180504_JU

iCount summary
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_type.tsv
260 B
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_gene.tsv
549.69 kB
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_subtype.tsv
630 B
iCount peaks
demux_NNNNTCACANNN_trimmed_single_peaks.bed.gz
31.53 kB
demux_NNNNTCACANNN_trimmed_single_peaks.bedgraph
81.49 kB
demux_NNNNTCACANNN_trimmed_single_scores.tsv.gz
385.41 kB
iCount xlsites
demux_NNNNTCACANNN_trimmed_singleAndMulti.bed.gz
952.44 kB
demux_NNNNTCACANNN_trimmed_single.bedgraph
1.18 MB
demux_NNNNTCACANNN_trimmed_single.bed.gz
307.56 kB
demux_NNNNTCACANNN_trimmed_skipped.bam
3.22 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCACANNN.fastq.gz
33.19 MB
demux_NNNNTCACANNN_fastqc.zip
463.02 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNTCACANNN_trimmed.fastq.gz
30.78 MB
demux_NNNNTCACANNN_trimmed_fastqc.zip
455.71 kB
STAR
demux_NNNNTCACANNN_trimmed.bam.bai
2.52 MB
demux_NNNNTCACANNN_trimmed_unmapped.out.mate1.fastq.gz
16.50 MB
demux_NNNNTCACANNN_trimmed.bam
107.65 MB
demux_NNNNTCACANNN_trimmed_SJ.out.tab
128.90 kB
demux_NNNNTCACANNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCACANNN_trimmed.bw
915.92 kB

GAR1_U2OS_no_UV_20180504_JU

iCount peaks
demux_NNNNCATACNNN_trimmed_single_peaks.bedgraph
1.12 MB
demux_NNNNCATACNNN_trimmed_single_scores.tsv.gz
6.57 MB
demux_NNNNCATACNNN_trimmed_single_peaks.bed.gz
350.02 kB
iCount summary
demux_NNNNCATACNNN_trimmed_single_summary.tsv_summary_type.tsv
272 B
demux_NNNNCATACNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.33 MB
demux_NNNNCATACNNN_trimmed_single_summary.tsv_summary_subtype.tsv
660 B
iCount xlsites
demux_NNNNCATACNNN_trimmed_single.bed.gz
8.06 MB
demux_NNNNCATACNNN_trimmed_skipped.bam
5.14 kB
demux_NNNNCATACNNN_trimmed_single.bedgraph
36.24 MB
demux_NNNNCATACNNN_trimmed_singleAndMulti.bed.gz
15.64 MB
STAR
demux_NNNNCATACNNN_trimmed.bam.bai
4.01 MB
demux_NNNNCATACNNN_trimmed_unmapped.out.mate1.fastq.gz
104.09 MB
demux_NNNNCATACNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCATACNNN_trimmed.bam
1.59 GB
demux_NNNNCATACNNN_trimmed_SJ.out.tab
1.27 MB
demux_NNNNCATACNNN_trimmed.bw
18.19 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNCATACNNN_trimmed.fastq.gz
599.58 MB
demux_NNNNCATACNNN_trimmed_fastqc.zip
502.13 kB
Reads (single-end)
demux_NNNNCATACNNN.fastq.gz
604.62 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNCATACNNN_fastqc.zip
526.73 kB

DKC1_U2OS_UV_20180504_JU

Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNAGTTANNN.fastq.gz
690.68 MB
demux_NNNNAGTTANNN_fastqc.zip
446.95 kB
iCount summary
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_type.tsv
279 B
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.67 MB
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_subtype.tsv
667 B
iCount peaks
demux_NNNNAGTTANNN_trimmed_single_peaks.bed.gz
5.50 MB
demux_NNNNAGTTANNN_trimmed_single_scores.tsv.gz
22.59 MB
demux_NNNNAGTTANNN_trimmed_single_peaks.bedgraph
25.21 MB
iCount xlsites
demux_NNNNAGTTANNN_trimmed_skipped.bam
9.81 kB
demux_NNNNAGTTANNN_trimmed_singleAndMulti.bed.gz
51.51 MB
demux_NNNNAGTTANNN_trimmed_single.bed.gz
29.88 MB
demux_NNNNAGTTANNN_trimmed_single.bedgraph
143.40 MB
STAR
demux_NNNNAGTTANNN_trimmed.bam
1.69 GB
demux_NNNNAGTTANNN_trimmed_SJ.out.tab
4.71 MB
demux_NNNNAGTTANNN_trimmed_unmapped.out.mate1.fastq.gz
149.29 MB
demux_NNNNAGTTANNN_trimmed_stats.txt
1.82 kB
demux_NNNNAGTTANNN_trimmed.bw
36.12 MB
demux_NNNNAGTTANNN_trimmed.bam.bai
3.35 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNAGTTANNN_trimmed.fastq.gz
688.81 MB
demux_NNNNAGTTANNN_trimmed_fastqc.zip
422.78 kB

DKC1_U2OS_no_UV_20180504_JU

iCount summary
demux_NNNNAGTCCNNN_trimmed_single_summary.tsv_summary_type.tsv
277 B
demux_NNNNAGTCCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
666 B
demux_NNNNAGTCCNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.53 MB
iCount xlsites
demux_NNNNAGTCCNNN_trimmed_single.bedgraph
99.05 MB
demux_NNNNAGTCCNNN_trimmed_skipped.bam
8.40 kB
demux_NNNNAGTCCNNN_trimmed_single.bed.gz
20.73 MB
demux_NNNNAGTCCNNN_trimmed_singleAndMulti.bed.gz
35.22 MB
iCount peaks
demux_NNNNAGTCCNNN_trimmed_single_peaks.bedgraph
14.13 MB
demux_NNNNAGTCCNNN_trimmed_single_scores.tsv.gz
15.83 MB
demux_NNNNAGTCCNNN_trimmed_single_peaks.bed.gz
3.13 MB
STAR
demux_NNNNAGTCCNNN_trimmed.bam
1.18 GB
demux_NNNNAGTCCNNN_trimmed_SJ.out.tab
3.67 MB
demux_NNNNAGTCCNNN_trimmed_unmapped.out.mate1.fastq.gz
98.34 MB
demux_NNNNAGTCCNNN_trimmed.bam.bai
3.44 MB
demux_NNNNAGTCCNNN_trimmed.bw
27.06 MB
demux_NNNNAGTCCNNN_trimmed_stats.txt
1.81 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNAGTCCNNN_trimmed.fastq.gz
463.36 MB
report.txt
686 B
demux_NNNNAGTCCNNN_trimmed_fastqc.zip
422.06 kB
Reads (single-end)
demux_NNNNAGTCCNNN.fastq.gz
464.50 MB
demux_NNNNAGTCCNNN_fastqc.zip
446.96 kB
fastqc
Directory
stderr.txt
975 B

IgG (GAR1)_U2OS_UV_20180504_JU

iCount summary
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_subtype.tsv
640 B
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_gene.tsv
718.40 kB
iCount peaks
demux_NNNNCTGTANNN_trimmed_single_peaks.bed.gz
40.28 kB
demux_NNNNCTGTANNN_trimmed_single_scores.tsv.gz
681.80 kB
demux_NNNNCTGTANNN_trimmed_single_peaks.bedgraph
108.08 kB
iCount xlsites
demux_NNNNCTGTANNN_trimmed_skipped.bam
4.02 kB
demux_NNNNCTGTANNN_trimmed_single.bed.gz
617.73 kB
demux_NNNNCTGTANNN_trimmed_singleAndMulti.bed.gz
1.61 MB
demux_NNNNCTGTANNN_trimmed_single.bedgraph
2.46 MB
STAR
demux_NNNNCTGTANNN_trimmed.bam
66.31 MB
demux_NNNNCTGTANNN_trimmed_unmapped.out.mate1.fastq.gz
10.66 MB
demux_NNNNCTGTANNN_trimmed.bam.bai
3.15 MB
demux_NNNNCTGTANNN_trimmed_stats.txt
1.80 kB
demux_NNNNCTGTANNN_trimmed_SJ.out.tab
177.21 kB
demux_NNNNCTGTANNN_trimmed.bw
1.77 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNCTGTANNN_trimmed.fastq.gz
22.97 MB
demux_NNNNCTGTANNN_trimmed_fastqc.zip
453.68 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNCTGTANNN_fastqc.zip
467.50 kB
demux_NNNNCTGTANNN.fastq.gz
24.17 MB

IgG (DKC1)_U2OS_U2OS_20180504_JU

iCount summary
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_subtype.tsv
639 B
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_gene.tsv
587.09 kB
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_type.tsv
267 B
iCount peaks
demux_NNNNGTAGANNN_trimmed_single_peaks.bed.gz
28.11 kB
demux_NNNNGTAGANNN_trimmed_single_scores.tsv.gz
498.61 kB
demux_NNNNGTAGANNN_trimmed_single_peaks.bedgraph
72.32 kB
iCount xlsites
demux_NNNNGTAGANNN_trimmed_singleAndMulti.bed.gz
914.35 kB
demux_NNNNGTAGANNN_trimmed_single.bedgraph
1.74 MB
demux_NNNNGTAGANNN_trimmed_single.bed.gz
439.20 kB
demux_NNNNGTAGANNN_trimmed_skipped.bam
3.31 kB
STAR
demux_NNNNGTAGANNN_trimmed.bam.bai
2.54 MB
demux_NNNNGTAGANNN_trimmed_unmapped.out.mate1.fastq.gz
3.09 MB
demux_NNNNGTAGANNN_trimmed.bam
23.65 MB
demux_NNNNGTAGANNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTAGANNN_trimmed.bw
1.05 MB
demux_NNNNGTAGANNN_trimmed_SJ.out.tab
141.18 kB
Cutadapt (single-end)
demux_NNNNGTAGANNN_trimmed.fastq.gz
9.67 MB
fastqc
Directory
report.txt
686 B
demux_NNNNGTAGANNN_trimmed_fastqc.zip
459.45 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGTAGANNN.fastq.gz
10.27 MB
stderr.txt
975 B
demux_NNNNGTAGANNN_fastqc.zip
464.65 kB

IgG (DKC1)_U2OS_UV_20180504_JU

iCount summary
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_gene.tsv
632.46 kB
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
iCount peaks
demux_NNNNGTAACNNN_trimmed_single_peaks.bedgraph
69.95 kB
demux_NNNNGTAACNNN_trimmed_single_peaks.bed.gz
27.48 kB
demux_NNNNGTAACNNN_trimmed_single_scores.tsv.gz
591.78 kB
iCount xlsites
demux_NNNNGTAACNNN_trimmed_single.bed.gz
543.79 kB
demux_NNNNGTAACNNN_trimmed_single.bedgraph
2.18 MB
demux_NNNNGTAACNNN_trimmed_skipped.bam
3.53 kB
demux_NNNNGTAACNNN_trimmed_singleAndMulti.bed.gz
1.13 MB
STAR
demux_NNNNGTAACNNN_trimmed_unmapped.out.mate1.fastq.gz
3.44 MB
demux_NNNNGTAACNNN_trimmed.bam
29.72 MB
demux_NNNNGTAACNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTAACNNN_trimmed.bam.bai
2.72 MB
demux_NNNNGTAACNNN_trimmed_SJ.out.tab
148.42 kB
demux_NNNNGTAACNNN_trimmed.bw
1.33 MB
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
demux_NNNNGTAACNNN_trimmed_fastqc.zip
473.86 kB
demux_NNNNGTAACNNN_trimmed.fastq.gz
10.93 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGTAACNNN.fastq.gz
11.48 MB
stderr.txt
975 B
demux_NNNNGTAACNNN_fastqc.zip
473.86 kB

No Sample

iCount peaks
demux_NNNNGGAGCNNN_trimmed_single_peaks.bed.gz
28.35 kB
demux_NNNNGGAGCNNN_trimmed_single_peaks.bedgraph
70.24 kB
demux_NNNNGGAGCNNN_trimmed_single_scores.tsv.gz
502.54 kB
iCount xlsites
demux_NNNNGGAGCNNN_trimmed_skipped.bam
3.28 kB
demux_NNNNGGAGCNNN_trimmed_single.bed.gz
443.17 kB
demux_NNNNGGAGCNNN_trimmed_singleAndMulti.bed.gz
927.39 kB
demux_NNNNGGAGCNNN_trimmed_single.bedgraph
1.76 MB
iCount summary
demux_NNNNAGTCCNNN_trimmed_single_summary.tsv_summary_type.tsv
277 B
demux_NNNNAGTCCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
666 B
demux_NNNNAGTCCNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.53 MB
Reads (single-end)
fastqc
Directory
demux_NNNNTATGANNN.fastq.gz
405.76 MB
stderr.txt
975 B
demux_NNNNTATGANNN_fastqc.zip
514.62 kB
iCount peaks
demux_NNNNTATGANNN_trimmed_single_peaks.bedgraph
921.48 kB
demux_NNNNTATGANNN_trimmed_single_scores.tsv.gz
5.36 MB
demux_NNNNTATGANNN_trimmed_single_peaks.bed.gz
281.36 kB
iCount xlsites
demux_NNNNTATGANNN_trimmed_skipped.bam
4.81 kB
demux_NNNNTATGANNN_trimmed_single.bed.gz
6.44 MB
demux_NNNNTATGANNN_trimmed_singleAndMulti.bed.gz
13.27 MB
demux_NNNNTATGANNN_trimmed_single.bedgraph
28.77 MB
STAR
demux_NNNNTATGANNN_trimmed_unmapped.out.mate1.fastq.gz
74.91 MB
demux_NNNNTATGANNN_trimmed.bam.bai
3.95 MB
demux_NNNNTATGANNN_trimmed_SJ.out.tab
1.06 MB
demux_NNNNTATGANNN_trimmed.bam
1.11 GB
demux_NNNNTATGANNN_trimmed.bw
15.51 MB
demux_NNNNTATGANNN_trimmed_stats.txt
1.81 kB
STAR
demux_NNNNTCGCCNNN_trimmed.bam
26.31 MB
demux_NNNNTCGCCNNN_trimmed_unmapped.out.mate1.fastq.gz
3.27 MB
demux_NNNNTCGCCNNN_trimmed.bam.bai
2.20 MB
demux_NNNNTCGCCNNN_trimmed.bw
617.11 kB
demux_NNNNTCGCCNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGCCNNN_trimmed_SJ.out.tab
96.58 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGCCNNN.fastq.gz
9.20 MB
stderr.txt
975 B
demux_NNNNTCGCCNNN_fastqc.zip
473.24 kB
STAR
demux_NNNNGGAGCNNN_trimmed.bam.bai
2.49 MB
demux_NNNNGGAGCNNN_trimmed_unmapped.out.mate1.fastq.gz
3.56 MB
demux_NNNNGGAGCNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGGAGCNNN_trimmed.bw
1.03 MB
demux_NNNNGGAGCNNN_trimmed.bam
27.08 MB
demux_NNNNGGAGCNNN_trimmed_SJ.out.tab
150.54 kB
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
demux_NNNNGGAGCNNN_trimmed.fastq.gz
10.38 MB
demux_NNNNGGAGCNNN_trimmed_fastqc.zip
466.79 kB
Reads (single-end)
demux_NNNNGGAGCNNN.fastq.gz
10.98 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNGGAGCNNN_fastqc.zip
465.21 kB
STAR
demux_NNNNTCACANNN_trimmed.bam.bai
2.52 MB
demux_NNNNTCACANNN_trimmed_unmapped.out.mate1.fastq.gz
16.50 MB
demux_NNNNTCACANNN_trimmed.bam
107.65 MB
demux_NNNNTCACANNN_trimmed_SJ.out.tab
128.90 kB
demux_NNNNTCACANNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCACANNN_trimmed.bw
915.92 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCACANNN.fastq.gz
33.19 MB
demux_NNNNTCACANNN_fastqc.zip
463.02 kB
iCount xlsites
demux_NNNNCATACNNN_trimmed_single.bed.gz
8.06 MB
demux_NNNNCATACNNN_trimmed_skipped.bam
5.14 kB
demux_NNNNCATACNNN_trimmed_single.bedgraph
36.24 MB
demux_NNNNCATACNNN_trimmed_singleAndMulti.bed.gz
15.64 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNCATACNNN_trimmed.fastq.gz
599.58 MB
demux_NNNNCATACNNN_trimmed_fastqc.zip
502.13 kB
Reads (single-end)
demux_NNNNCATACNNN.fastq.gz
604.62 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNCATACNNN_fastqc.zip
526.73 kB
iCount xlsites
demux_NNNNCAGAANNN_trimmed_skipped.bam
4.59 kB
demux_NNNNCAGAANNN_trimmed_single.bed.gz
6.11 MB
demux_NNNNCAGAANNN_trimmed_singleAndMulti.bed.gz
12.71 MB
demux_NNNNCAGAANNN_trimmed_single.bedgraph
27.27 MB
STAR
demux_NNNNCAGAANNN_trimmed_unmapped.out.mate1.fastq.gz
70.24 MB
demux_NNNNCAGAANNN_trimmed.bam
1.02 GB
demux_NNNNCAGAANNN_trimmed_SJ.out.tab
1.03 MB
demux_NNNNCAGAANNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAANNN_trimmed.bam.bai
3.91 MB
demux_NNNNCAGAANNN_trimmed.bw
14.92 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAANNN.fastq.gz
383.53 MB
demux_NNNNCAGAANNN_fastqc.zip
512.16 kB
stderr.txt
975 B
STAR
demux_NNNNAGTCCNNN_trimmed.bam
1.18 GB
demux_NNNNAGTCCNNN_trimmed_SJ.out.tab
3.67 MB
demux_NNNNAGTCCNNN_trimmed_unmapped.out.mate1.fastq.gz
98.34 MB
demux_NNNNAGTCCNNN_trimmed.bam.bai
3.44 MB
demux_NNNNAGTCCNNN_trimmed.bw
27.06 MB
demux_NNNNAGTCCNNN_trimmed_stats.txt
1.81 kB
Reads (single-end)
demux_NNNNAGTCCNNN.fastq.gz
464.50 MB
demux_NNNNAGTCCNNN_fastqc.zip
446.96 kB
fastqc
Directory
stderr.txt
975 B
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNCTGTANNN_fastqc.zip
467.50 kB
demux_NNNNCTGTANNN.fastq.gz
24.17 MB
STAR
demux_NNNNAGTTANNN_trimmed.bam
1.69 GB
demux_NNNNAGTTANNN_trimmed_SJ.out.tab
4.71 MB
demux_NNNNAGTTANNN_trimmed_unmapped.out.mate1.fastq.gz
149.29 MB
demux_NNNNAGTTANNN_trimmed_stats.txt
1.82 kB
demux_NNNNAGTTANNN_trimmed.bw
36.12 MB
demux_NNNNAGTTANNN_trimmed.bam.bai
3.35 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNAGTTANNN_trimmed.fastq.gz
688.81 MB
demux_NNNNAGTTANNN_trimmed_fastqc.zip
422.78 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAGTTANNN.fastq.gz
690.68 MB
stderr.txt
975 B
demux_NNNNAGTTANNN_fastqc.zip
446.95 kB
iCount peaks
demux_NNNNGTAGANNN_trimmed_single_peaks.bed.gz
28.11 kB
demux_NNNNGTAGANNN_trimmed_single_scores.tsv.gz
498.61 kB
demux_NNNNGTAGANNN_trimmed_single_peaks.bedgraph
72.32 kB
STAR
demux_NNNNGTAGANNN_trimmed.bam.bai
2.54 MB
demux_NNNNGTAGANNN_trimmed_unmapped.out.mate1.fastq.gz
3.09 MB
demux_NNNNGTAGANNN_trimmed.bam
23.65 MB
demux_NNNNGTAGANNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTAGANNN_trimmed.bw
1.05 MB
demux_NNNNGTAGANNN_trimmed_SJ.out.tab
141.18 kB
Cutadapt (single-end)
demux_NNNNGTAGANNN_trimmed.fastq.gz
9.67 MB
fastqc
Directory
report.txt
686 B
demux_NNNNGTAGANNN_trimmed_fastqc.zip
459.45 kB
iCount peaks
demux_NNNNGTAACNNN_trimmed_single_peaks.bedgraph
69.95 kB
demux_NNNNGTAACNNN_trimmed_single_peaks.bed.gz
27.48 kB
demux_NNNNGTAACNNN_trimmed_single_scores.tsv.gz
591.78 kB
iCount xlsites
demux_NNNNGTAACNNN_trimmed_single.bed.gz
543.79 kB
demux_NNNNGTAACNNN_trimmed_single.bedgraph
2.18 MB
demux_NNNNGTAACNNN_trimmed_skipped.bam
3.53 kB
demux_NNNNGTAACNNN_trimmed_singleAndMulti.bed.gz
1.13 MB
STAR
demux_NNNNGTAACNNN_trimmed_unmapped.out.mate1.fastq.gz
3.44 MB
demux_NNNNGTAACNNN_trimmed.bam
29.72 MB
demux_NNNNGTAACNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTAACNNN_trimmed.bam.bai
2.72 MB
demux_NNNNGTAACNNN_trimmed_SJ.out.tab
148.42 kB
demux_NNNNGTAACNNN_trimmed.bw
1.33 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGTAACNNN.fastq.gz
11.48 MB
stderr.txt
975 B
demux_NNNNGTAACNNN_fastqc.zip
473.86 kB
STAR
demux_NNNNATCCANNN_trimmed.bam
1.29 GB
demux_NNNNATCCANNN_trimmed.bam.bai
3.20 MB
demux_NNNNATCCANNN_trimmed_stats.txt
1.81 kB
demux_NNNNATCCANNN_trimmed_SJ.out.tab
4.20 MB
demux_NNNNATCCANNN_trimmed.bw
32.61 MB
demux_NNNNATCCANNN_trimmed_unmapped.out.mate1.fastq.gz
119.71 MB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNATCCANNN_trimmed.fastq.gz
529.59 MB
demux_NNNNATCCANNN_trimmed_fastqc.zip
426.38 kB
report.txt
686 B
Reads (single-end)
demux_NNNNATCCANNN.fastq.gz
532.72 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNATCCANNN_fastqc.zip
450.37 kB
iCount summary
demux_NNNNGGAGCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
641 B
demux_NNNNGGAGCNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNGGAGCNNN_trimmed_single_summary.tsv_summary_gene.tsv
591.73 kB
iCount peaks
demux_NNNNTCGCCNNN_trimmed_single_peaks.bedgraph
64.42 kB
demux_NNNNTCGCCNNN_trimmed_single_peaks.bed.gz
25.89 kB
demux_NNNNTCGCCNNN_trimmed_single_scores.tsv.gz
301.35 kB
iCount summary
demux_NNNNTCGCCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNTCGCCNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNTCGCCNNN_trimmed_single_summary.tsv_summary_gene.tsv
466.04 kB
iCount xlsites
demux_NNNNTCGCCNNN_trimmed_skipped.bam
3.16 kB
demux_NNNNTCGCCNNN_trimmed_singleAndMulti.bed.gz
641.55 kB
demux_NNNNTCGCCNNN_trimmed_single.bedgraph
899.81 kB
demux_NNNNTCGCCNNN_trimmed_single.bed.gz
230.54 kB
iCount peaks
demux_NNNNTCACANNN_trimmed_single_peaks.bed.gz
31.53 kB
demux_NNNNTCACANNN_trimmed_single_peaks.bedgraph
81.49 kB
demux_NNNNTCACANNN_trimmed_single_scores.tsv.gz
385.41 kB
iCount xlsites
demux_NNNNTCACANNN_trimmed_singleAndMulti.bed.gz
952.44 kB
demux_NNNNTCACANNN_trimmed_single.bedgraph
1.18 MB
demux_NNNNTCACANNN_trimmed_single.bed.gz
307.56 kB
demux_NNNNTCACANNN_trimmed_skipped.bam
3.22 kB
iCount summary
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_type.tsv
260 B
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_gene.tsv
549.69 kB
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_subtype.tsv
630 B
iCount summary
demux_NNNNCAGAANNN_trimmed_single_summary.tsv_summary_type.tsv
273 B
demux_NNNNCAGAANNN_trimmed_single_summary.tsv_summary_subtype.tsv
658 B
demux_NNNNCAGAANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.29 MB
iCount summary
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_type.tsv
279 B
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.67 MB
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_subtype.tsv
667 B
iCount summary
demux_NNNNTATGANNN_trimmed_single_summary.tsv_summary_type.tsv
275 B
demux_NNNNTATGANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.29 MB
demux_NNNNTATGANNN_trimmed_single_summary.tsv_summary_subtype.tsv
659 B
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNTATGANNN_trimmed.fastq.gz
403.57 MB
demux_NNNNTATGANNN_trimmed_fastqc.zip
490.79 kB
iCount summary
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_subtype.tsv
640 B
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_gene.tsv
718.40 kB
iCount summary
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_subtype.tsv
639 B
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_gene.tsv
587.09 kB
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_type.tsv
267 B
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
demux_NNNNTCGCCNNN_trimmed.fastq.gz
8.42 MB
demux_NNNNTCGCCNNN_trimmed_fastqc.zip
480.93 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNTCACANNN_trimmed.fastq.gz
30.78 MB
demux_NNNNTCACANNN_trimmed_fastqc.zip
455.71 kB
iCount peaks
demux_NNNNCATACNNN_trimmed_single_peaks.bedgraph
1.12 MB
demux_NNNNCATACNNN_trimmed_single_scores.tsv.gz
6.57 MB
demux_NNNNCATACNNN_trimmed_single_peaks.bed.gz
350.02 kB
iCount summary
demux_NNNNCATACNNN_trimmed_single_summary.tsv_summary_type.tsv
272 B
demux_NNNNCATACNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.33 MB
demux_NNNNCATACNNN_trimmed_single_summary.tsv_summary_subtype.tsv
660 B
STAR
demux_NNNNCATACNNN_trimmed.bam.bai
4.01 MB
demux_NNNNCATACNNN_trimmed_unmapped.out.mate1.fastq.gz
104.09 MB
demux_NNNNCATACNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCATACNNN_trimmed.bam
1.59 GB
demux_NNNNCATACNNN_trimmed_SJ.out.tab
1.27 MB
demux_NNNNCATACNNN_trimmed.bw
18.19 MB
iCount peaks
demux_NNNNCAGAANNN_trimmed_single_peaks.bedgraph
921.49 kB
demux_NNNNCAGAANNN_trimmed_single_scores.tsv.gz
5.12 MB
demux_NNNNCAGAANNN_trimmed_single_peaks.bed.gz
282.15 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNCAGAANNN_trimmed.fastq.gz
381.67 MB
demux_NNNNCAGAANNN_trimmed_fastqc.zip
492.99 kB
report.txt
686 B
iCount peaks
demux_NNNNAGTCCNNN_trimmed_single_peaks.bedgraph
14.13 MB
demux_NNNNAGTCCNNN_trimmed_single_scores.tsv.gz
15.83 MB
demux_NNNNAGTCCNNN_trimmed_single_peaks.bed.gz
3.13 MB
iCount xlsites
demux_NNNNAGTCCNNN_trimmed_single.bedgraph
99.05 MB
demux_NNNNAGTCCNNN_trimmed_skipped.bam
8.40 kB
demux_NNNNAGTCCNNN_trimmed_single.bed.gz
20.73 MB
demux_NNNNAGTCCNNN_trimmed_singleAndMulti.bed.gz
35.22 MB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNAGTCCNNN_trimmed.fastq.gz
463.36 MB
report.txt
686 B
demux_NNNNAGTCCNNN_trimmed_fastqc.zip
422.06 kB
iCount peaks
demux_NNNNCTGTANNN_trimmed_single_peaks.bed.gz
40.28 kB
demux_NNNNCTGTANNN_trimmed_single_scores.tsv.gz
681.80 kB
demux_NNNNCTGTANNN_trimmed_single_peaks.bedgraph
108.08 kB
iCount xlsites
demux_NNNNCTGTANNN_trimmed_skipped.bam
4.02 kB
demux_NNNNCTGTANNN_trimmed_single.bed.gz
617.73 kB
demux_NNNNCTGTANNN_trimmed_singleAndMulti.bed.gz
1.61 MB
demux_NNNNCTGTANNN_trimmed_single.bedgraph
2.46 MB
STAR
demux_NNNNCTGTANNN_trimmed.bam
66.31 MB
demux_NNNNCTGTANNN_trimmed_unmapped.out.mate1.fastq.gz
10.66 MB
demux_NNNNCTGTANNN_trimmed.bam.bai
3.15 MB
demux_NNNNCTGTANNN_trimmed_stats.txt
1.80 kB
demux_NNNNCTGTANNN_trimmed_SJ.out.tab
177.21 kB
demux_NNNNCTGTANNN_trimmed.bw
1.77 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNCTGTANNN_trimmed.fastq.gz
22.97 MB
demux_NNNNCTGTANNN_trimmed_fastqc.zip
453.68 kB
iCount peaks
demux_NNNNAGTTANNN_trimmed_single_peaks.bed.gz
5.50 MB
demux_NNNNAGTTANNN_trimmed_single_scores.tsv.gz
22.59 MB
demux_NNNNAGTTANNN_trimmed_single_peaks.bedgraph
25.21 MB
iCount xlsites
demux_NNNNAGTTANNN_trimmed_skipped.bam
9.81 kB
demux_NNNNAGTTANNN_trimmed_singleAndMulti.bed.gz
51.51 MB
demux_NNNNAGTTANNN_trimmed_single.bed.gz
29.88 MB
demux_NNNNAGTTANNN_trimmed_single.bedgraph
143.40 MB
iCount xlsites
demux_NNNNGTAGANNN_trimmed_singleAndMulti.bed.gz
914.35 kB
demux_NNNNGTAGANNN_trimmed_single.bedgraph
1.74 MB
demux_NNNNGTAGANNN_trimmed_single.bed.gz
439.20 kB
demux_NNNNGTAGANNN_trimmed_skipped.bam
3.31 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGTAGANNN.fastq.gz
10.27 MB
stderr.txt
975 B
demux_NNNNGTAGANNN_fastqc.zip
464.65 kB
iCount summary
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_gene.tsv
632.46 kB
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
iCount summary
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.64 MB
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_subtype.tsv
664 B
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_type.tsv
274 B
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
demux_NNNNGTAACNNN_trimmed_fastqc.zip
473.86 kB
demux_NNNNGTAACNNN_trimmed.fastq.gz
10.93 MB
iCount peaks
demux_NNNNATCCANNN_trimmed_single_peaks.bed.gz
3.90 MB
demux_NNNNATCCANNN_trimmed_single_peaks.bedgraph
17.73 MB
demux_NNNNATCCANNN_trimmed_single_scores.tsv.gz
18.68 MB
iCount xlsites
demux_NNNNATCCANNN_trimmed_single.bed.gz
24.58 MB
demux_NNNNATCCANNN_trimmed_singleAndMulti.bed.gz
43.23 MB
demux_NNNNATCCANNN_trimmed_single.bedgraph
117.62 MB
demux_NNNNATCCANNN_trimmed_skipped.bam
8.95 kB