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Folder iconPRPF8 iCLIP with 4A3 KD

apibot
July 11, 2018
Recursive splicing (RS) starts by defining an “RS-exon,” which is then spliced to the preceding exon, thus creating a recursive 5′ splice site (RS-5ss). Previous studies focused on cryptic RS-exons, and now we find that the exon junction complex (EJC) represses RS of hundreds of annotated, mainly constitutive RS-exons. The core EJC factors, and the peripheral factors PNN and RNPS1, maintain RS-exon inclusion by repressing spliceosomal assembly on RS-5ss. The EJC also blocks 5ss located near exon-exon junctions, thus repressing inclusion of cryptic microexons. The prevalence of annotated RS-exons is high in deuterostomes, while the cryptic RS-exons are more prevalent in Drosophila, where EJC appears less capable of repressing RS. Notably, incomplete repression of RS also contributes to physiological alternative splicing of several human RS-exons. Finally, haploinsufficiency of the EJC factor Magoh in mice is associated with skipping of RS-exons in the brain, with relevance to the microcephaly phenotype and human diseases.

No Sample

Reads (single-end)
fastqc
Directory
demux_NNNNCAGAACGTNNNNN_fastqc.zip
579.95 kB
stderr.txt
1.05 kB
demux_NNNNCAGAACGTNNNNN.fastq.gz
165.22 MB
K-mers
intron region.png
171.76 kB
kmer_frequency_utr3.tsv
2.56 kB
kmer_frequency_ncRNA.tsv
5.76 kB
other_exon region.png
298.93 kB
positional_distribution_intron.tsv
155.13 kB
ncRNA region.png
253.48 kB
utr3 region.png
143.37 kB
kmer_frequency_genome.tsv
5.85 kB
kmer_frequency_other_exon.tsv
5.74 kB
kmer_frequency_intron.tsv
4.64 kB
positional_distribution_utr3.tsv
110.57 kB
positional_distribution_genome.tsv
431.24 kB
positional_distribution_other_exon.tsv
297.45 kB
positional_distribution_ncRNA.tsv
285.43 kB
genome region.png
269.59 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAATTANNNNN.fastq.gz
173.41 MB
demux_NNNNCAGAATTANNNNN_fastqc.zip
531.59 kB
stderr.txt
1.05 kB
iCount summary
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single_summary_gene.tsv
1019.66 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single_summary_type.tsv
438 B
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single_summary_subtype.tsv
1007 B
iCount summary
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single_summary_subtype.tsv
1009 B
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single_summary_type.tsv
435 B
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single_summary_gene.tsv
947.72 kB
iCount RNA-maps
results.tar.gz
713.92 kB
FASTQ file (single-end)
prpf8-hela-eif4a3-sirna-20190611-ju-3.fastq.gz
173.27 MB
fastqc
Directory
stderr.txt
1.32 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_fastqc.zip
554.70 kB
iCount RNA-maps
results.tar.gz
734.43 kB
Paraclu
peaks.bed.gz
3.14 kB
iCount RNA-maps
demux_NNNNCAGAAATTNNNNN_trimmed_single.tar.gz
786.62 kB
Paraclu
peaks.bed.gz
59.81 kB
Paraclu
peaks.bed.gz
4.64 kB
iCount clusters
demux_NNNNATCCANNN_trimmed_single_clustered.bed.gz
391.20 kB
demux_NNNNATCCANNN_trimmed_single_clustered.bedgraph
933.85 kB
iCount clusters
demux_NNNNCAGAATTANNNNN_trimmed_single_clustered.bed.gz
198.14 kB
demux_NNNNCAGAATTANNNNN_trimmed_single_clustered.bedgraph
421.75 kB
iCount RNA-maps
results.tar.gz
1.26 MB
iCount annotate
PRPF8_Comparison_Rahul_grouped_cdna_annotated.bed.gz
7.45 MB
PRPF8_Comparison_Rahul_grouped_cdna_annotated.bedgraph
24.69 MB
iCount clusters
demux_NNNNCAGAACGTNNNNN_trimmed_single_clustered.bedgraph
451.69 kB
demux_NNNNCAGAACGTNNNNN_trimmed_single_clustered.bed.gz
208.78 kB
K-mers
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_intron.tsv
5.88 kB
other_exon region.png
208.43 kB
intron region.png
235.17 kB
positional_distribution_ncRNA.tsv
461.32 kB
positional_distribution_utr3.tsv
246.67 kB
positional_distribution_intron.tsv
321.15 kB
kmer_frequency_utr3.tsv
5.34 kB
kmer_frequency_genome.tsv
5.80 kB
genome region.png
272.72 kB
positional_distribution_genome.tsv
567.73 kB
ncRNA region.png
279.54 kB
kmer_frequency_other_exon.tsv
5.85 kB
utr3 region.png
219.01 kB
positional_distribution_other_exon.tsv
566.84 kB
STAR
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_unmapped.out.mate1.fastq.gz
29.34 MB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_stats.txt
1.81 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed.bam
355.35 MB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_SJ.out.tab
181.40 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed.bam.bai
3.40 MB
K-mers
other_exon region.png
284.30 kB
kmer_frequency_intron.tsv
4.43 kB
positional_distribution_ncRNA.tsv
302.83 kB
kmer_frequency_ncRNA.tsv
5.55 kB
intron region.png
167.12 kB
kmer_frequency_genome.tsv
5.85 kB
positional_distribution_intron.tsv
149.20 kB
kmer_frequency_utr3.tsv
2.34 kB
utr3 region.png
152.20 kB
positional_distribution_utr3.tsv
99.54 kB
kmer_frequency_other_exon.tsv
5.72 kB
positional_distribution_genome.tsv
420.24 kB
genome region.png
294.69 kB
positional_distribution_other_exon.tsv
266.83 kB
ncRNA region.png
247.55 kB
iCount clusters
demux_NNNNCAGAAATTNNNNN_trimmed_single_clustered.bed.gz
223.09 kB
demux_NNNNCAGAAATTNNNNN_trimmed_single_clustered.bedgraph
492.66 kB
Paraclu
peaks.bed.gz
6.68 kB
iCount RNA-maps
demux_NNNNATCCANNN_trimmed_single.tar.gz
1.46 MB
iCount RNA-maps
results.tar.gz
651.54 kB
Paraclu
peaks.bed.gz
3.34 kB
Paraclu
PRPF8_Comparison_Rahul_grouped_cdna_peaks.bed.gz
229.00 kB
iCount summary
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single_summary_subtype.tsv
1004 B
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single_summary_type.tsv
436 B
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single_summary_gene.tsv
885.14 kB
iCount segment
chrom_lenghts.txt
9.46 kB
results
Directory
templates
Directory
iCount RNA-maps
results.tar.gz
741.90 kB
iCount RNA-maps
demux_NNNNCAGAACTGNNNNN_trimmed_single.tar.gz
830.33 kB
FASTQ file (single-end)
stderr.txt
1.32 kB
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju-4_fastqc.zip
563.11 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4.fastq.gz
167.85 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
692 B
demux_NNNNCAGAATTANNNNN_trimmed.fastq.gz
165.18 MB
demux_NNNNCAGAATTANNNNN_trimmed_fastqc.zip
503.80 kB
iCount peaks
demux_NNNNCAGAAAGGNNNNN_trimmed_single_peaks.bed.gz
182.50 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_single_scores.tsv.gz
597.37 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_single_peaks.bedgraph
429.41 kB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNTCACANNN.fastq.gz
187.94 MB
demux_NNNNTCACANNN_fastqc.zip
641.67 kB
iCount peaks
demux_NNNNCAGAACGTNNNNN_trimmed_single_peaks.bed.gz
254.48 kB
demux_NNNNCAGAACGTNNNNN_trimmed_single_scores.tsv.gz
815.77 kB
demux_NNNNCAGAACGTNNNNN_trimmed_single_peaks.bedgraph
648.12 kB
iCount peaks
demux_NNNNCAGAATGCNNNNN_trimmed_single_peaks.bed.gz
248.13 kB
demux_NNNNCAGAATGCNNNNN_trimmed_single_peaks.bedgraph
633.49 kB
demux_NNNNCAGAATGCNNNNN_trimmed_single_scores.tsv.gz
808.74 kB
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju-2.fastq.gz
161.82 MB
prpf8-hela-eif4a3-sirna-20190611-ju-2_fastqc.zip
559.09 kB
stderr.txt
1.32 kB
Paraclu
peaks.bed.gz
5.99 kB
STAR
demux_NNNNATCCANNN_trimmed_unmapped.out.mate1.fastq.gz
44.36 MB
demux_NNNNATCCANNN_trimmed.bam.bai
3.87 MB
demux_NNNNATCCANNN_trimmed.bam
383.60 MB
demux_NNNNATCCANNN_trimmed_stats.txt
1.81 kB
demux_NNNNATCCANNN_trimmed_SJ.out.tab
701.71 kB
demux_NNNNATCCANNN_trimmed.bw
4.77 MB
iCount xlsites
demux_NNNNCAGAATGCNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCAGAATGCNNNNN_trimmed_singleAndMulti.bed.gz
1.88 MB
demux_NNNNCAGAATGCNNNNN_trimmed_single.bed.gz
739.61 kB
demux_NNNNCAGAATGCNNNNN_trimmed_single.bedgraph
2.94 MB
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju-3.fastq.gz
130.52 MB
stderr.txt
1.36 kB
prpf8-hela-scramble-sirna-20190611-ju-3_fastqc.zip
582.78 kB
iCount clusters
demux_NNNNCAGAATGCNNNNN_trimmed_single_clustered.bed.gz
203.31 kB
demux_NNNNCAGAATGCNNNNN_trimmed_single_clustered.bedgraph
440.76 kB
iCount summary
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single_summary_type.tsv
439 B
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single_summary_subtype.tsv
1013 B
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single_summary_gene.tsv
1.02 MB
Paraclu
peaks.bed.gz
5.37 kB
iCount summary
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single_summary_subtype.tsv
1006 B
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single_summary_gene.tsv
1.00 MB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single_summary_type.tsv
438 B
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju.fastq.gz
196.66 MB
stderr.txt
1.28 kB
prpf8-hela-eif4a3-sirna-20190611-ju_fastqc.zip
652.61 kB
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju.fastq.gz
243.80 MB
prpf8-hela-scramble-sirna-20190611-ju_fastqc.zip
622.58 kB
stderr.txt
1.32 kB
iCount summary
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single_summary_subtype.tsv
1023 B
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single_summary_type.tsv
441 B
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single_summary_gene.tsv
1.18 MB
Paraclu
peaks.bed.gz
48.12 kB
iCount clusters
demux_NNNNCAGAAAGGNNNNN_trimmed_single_clustered.bedgraph
320.95 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_single_clustered.bed.gz
156.65 kB
iCount clusters
demux_NNNNCAGAACTGNNNNN_trimmed_single_clustered.bed.gz
206.23 kB
demux_NNNNCAGAACTGNNNNN_trimmed_single_clustered.bedgraph
445.76 kB
iCount group
PRPF8_Comparison_Rahul_grouped_reads.bed.gz
6.20 MB
PRPF8_Comparison_Rahul_grouped_cdna.bed.gz
5.39 MB
PRPF8_Comparison_Rahul_grouped_cdna.bedgraph
24.69 MB
iCount summary
PRPF8_Comparison_Rahul_grouped_cdna_summary_type.tsv
450 B
PRPF8_Comparison_Rahul_grouped_cdna_summary_subtype.tsv
1.01 kB
PRPF8_Comparison_Rahul_grouped_cdna_summary_gene.tsv
1.77 MB
iCount xlsites
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_skipped.bam
3.12 kB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_reads_single.bed.gz
515.66 kB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single.bedgraph
1.69 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_singleAndMulti.bed.gz
1.13 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single.bed.gz
442.89 kB
iCount RNA-maps
PRPF8_Comparison_Rahul_grouped_cdna.tar.gz
2.23 MB
iCount clusters
demux_NNNNTCACANNN_trimmed_single_clustered.bed.gz
415.11 kB
demux_NNNNTCACANNN_trimmed_single_clustered.bedgraph
997.71 kB
iCount peaks
demux_NNNNTCACANNN_trimmed_single_scores.tsv.gz
2.25 MB
demux_NNNNTCACANNN_trimmed_single_peaks.bed.gz
767.12 kB
demux_NNNNTCACANNN_trimmed_single_peaks.bedgraph
2.80 MB
iCount peaks
demux_NNNNCAGAATTANNNNN_trimmed_single_peaks.bed.gz
228.77 kB
demux_NNNNCAGAATTANNNNN_trimmed_single_scores.tsv.gz
725.42 kB
demux_NNNNCAGAATTANNNNN_trimmed_single_peaks.bedgraph
550.71 kB
iCount peaks
demux_NNNNCAGAACTGNNNNN_trimmed_single_scores.tsv.gz
833.01 kB
demux_NNNNCAGAACTGNNNNN_trimmed_single_peaks.bedgraph
640.04 kB
demux_NNNNCAGAACTGNNNNN_trimmed_single_peaks.bed.gz
250.78 kB
iCount summary
demux_NNNNCAGAATGCNNNNN_trimmed_single_summary.tsv_summary_type.tsv
267 B
demux_NNNNCAGAATGCNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
740.30 kB
demux_NNNNCAGAATGCNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
642 B
Cutadapt (single-end)
fastqc
Directory
report.txt
690 B
demux_NNNNCAGAATGCNNNNN_trimmed.fastq.gz
162.38 MB
demux_NNNNCAGAATGCNNNNN_trimmed_fastqc.zip
562.72 kB
iCount summary
demux_NNNNCAGAAAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAAAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
268 B
demux_NNNNCAGAAAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
661.97 kB
iCount xlsites
demux_NNNNCAGAAAGGNNNNN_trimmed_single.bed.gz
522.55 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_singleAndMulti.bed.gz
1.36 MB
demux_NNNNCAGAAAGGNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_single.bedgraph
2.04 MB
iCount summary
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_type.tsv
270 B
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_gene.tsv
973.59 kB
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_subtype.tsv
651 B
iCount xlsites
demux_NNNNTCACANNN_trimmed_single.bed.gz
2.37 MB
demux_NNNNTCACANNN_trimmed_skipped.bam
3.22 kB
demux_NNNNTCACANNN_trimmed_singleAndMulti.bed.gz
4.65 MB
demux_NNNNTCACANNN_trimmed_single.bedgraph
10.85 MB
STAR
demux_NNNNTCACANNN_trimmed_SJ.out.tab
743.85 kB
demux_NNNNTCACANNN_trimmed_unmapped.out.mate1.fastq.gz
42.85 MB
demux_NNNNTCACANNN_trimmed.bam
434.28 MB
demux_NNNNTCACANNN_trimmed.bam.bai
3.86 MB
demux_NNNNTCACANNN_trimmed.bw
4.73 MB
demux_NNNNTCACANNN_trimmed_stats.txt
1.81 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNTCACANNN_trimmed_fastqc.zip
596.34 kB
demux_NNNNTCACANNN_trimmed.fastq.gz
187.37 MB
iCount summary
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single_summary_type.tsv
444 B
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single_summary_subtype.tsv
1.00 kB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single_summary_gene.tsv
1.21 MB
iCount summary
demux_NNNNCAGAATTANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAATTANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
723.38 kB
demux_NNNNCAGAATTANNNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
iCount xlsites
demux_NNNNCAGAATTANNNNN_trimmed_single.bed.gz
651.43 kB
demux_NNNNCAGAATTANNNNN_trimmed_singleAndMulti.bed.gz
1.63 MB
demux_NNNNCAGAATTANNNNN_trimmed_single.bedgraph
2.55 MB
demux_NNNNCAGAATTANNNNN_trimmed_skipped.bam
2.91 kB
iCount summary
demux_NNNNCAGAACGTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
demux_NNNNCAGAACGTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
642 B
demux_NNNNCAGAACGTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
751.08 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNATCCANNN_trimmed.fastq.gz
172.88 MB
demux_NNNNATCCANNN_trimmed_fastqc.zip
575.36 kB
iCount summary
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_gene.tsv
986.91 kB
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_type.tsv
270 B
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_subtype.tsv
651 B
iCount summary
demux_NNNNCAGAAATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
738.42 kB
demux_NNNNCAGAAATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAGAAATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
642 B
iCount xlsites
demux_NNNNCAGAAATTNNNNN_trimmed_singleAndMulti.bed.gz
1.72 MB
demux_NNNNCAGAAATTNNNNN_trimmed_single.bedgraph
2.83 MB
demux_NNNNCAGAAATTNNNNN_trimmed_single.bed.gz
718.09 kB
demux_NNNNCAGAAATTNNNNN_trimmed_skipped.bam
3.69 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
692 B
demux_NNNNCAGAAATTNNNNN_trimmed.fastq.gz
194.37 MB
demux_NNNNCAGAAATTNNNNN_trimmed_fastqc.zip
514.00 kB
iCount xlsites
demux_NNNNCAGAACGTNNNNN_trimmed_single.bed.gz
744.48 kB
demux_NNNNCAGAACGTNNNNN_trimmed_singleAndMulti.bed.gz
1.94 MB
demux_NNNNCAGAACGTNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCAGAACGTNNNNN_trimmed_single.bedgraph
2.96 MB
STAR
demux_NNNNCAGAACGTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
28.90 MB
demux_NNNNCAGAACGTNNNNN_trimmed.bam
351.74 MB
demux_NNNNCAGAACGTNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAACGTNNNNN_trimmed.bam.bai
3.37 MB
demux_NNNNCAGAACGTNNNNN_trimmed_SJ.out.tab
260.86 kB
demux_NNNNCAGAACGTNNNNN_trimmed.bw
2.26 MB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNCAGAACGTNNNNN_trimmed.fastq.gz
170.80 MB
demux_NNNNCAGAACGTNNNNN_trimmed_fastqc.zip
560.54 kB
report.txt
690 B
iCount summary
demux_NNNNCAGAACTGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
268 B
demux_NNNNCAGAACTGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAACTGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
758.79 kB
iCount xlsites
demux_NNNNCAGAACTGNNNNN_trimmed_single.bed.gz
763.58 kB
demux_NNNNCAGAACTGNNNNN_trimmed_singleAndMulti.bed.gz
2.05 MB
demux_NNNNCAGAACTGNNNNN_trimmed_skipped.bam
3.06 kB
demux_NNNNCAGAACTGNNNNN_trimmed_single.bedgraph
3.04 MB
STAR
demux_NNNNCAGAACTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
32.08 MB
demux_NNNNCAGAACTGNNNNN_trimmed.bam.bai
3.49 MB
demux_NNNNCAGAACTGNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAACTGNNNNN_trimmed.bw
2.40 MB
demux_NNNNCAGAACTGNNNNN_trimmed.bam
370.30 MB
demux_NNNNCAGAACTGNNNNN_trimmed_SJ.out.tab
232.14 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
690 B
demux_NNNNCAGAACTGNNNNN_trimmed.fastq.gz
172.30 MB
demux_NNNNCAGAACTGNNNNN_trimmed_fastqc.zip
566.69 kB
Reads (single-end)
demux_NNNNCAGAACTGNNNNN.fastq.gz
166.57 MB
fastqc
Directory
demux_NNNNCAGAACTGNNNNN_fastqc.zip
584.36 kB
stderr.txt
1.05 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAAATTNNNNN.fastq.gz
200.82 MB
stderr.txt
1.05 kB
demux_NNNNCAGAAATTNNNNN_fastqc.zip
539.01 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCCANNN_fastqc.zip
595.95 kB
demux_NNNNATCCANNN.fastq.gz
175.16 MB
stderr.txt
975 B
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAATGCNNNNN_fastqc.zip
584.01 kB
stderr.txt
1.05 kB
demux_NNNNCAGAATGCNNNNN.fastq.gz
157.10 MB
STAR
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_unmapped.out.mate1.fastq.gz
19.71 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed.bam.bai
2.98 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed.bam
239.71 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_SJ.out.tab
115.23 kB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_stats.txt
1.81 kB
STAR
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_unmapped.out.mate1.fastq.gz
25.99 MB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed.bam.bai
3.31 MB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_SJ.out.tab
194.91 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_stats.txt
1.81 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed.bam
326.91 MB
STAR
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed.bam.bai
3.22 MB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_unmapped.out.mate1.fastq.gz
25.87 MB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_SJ.out.tab
192.30 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_stats.txt
1.81 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed.bam
314.84 MB
STAR
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed.bam.bai
2.93 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed.bam
255.80 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_SJ.out.tab
109.96 kB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_unmapped.out.mate1.fastq.gz
20.47 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_stats.txt
1.81 kB
STAR
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed.bam.bai
3.00 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_unmapped.out.mate1.fastq.gz
22.60 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_stats.txt
1.81 kB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed.bam
305.92 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_SJ.out.tab
169.68 kB
STAR
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_unmapped.out.mate1.fastq.gz
38.57 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed.bam
396.62 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_SJ.out.tab
638.56 kB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_stats.txt
1.81 kB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed.bam.bai
3.09 MB
STAR
prpf8-hela-scramble-sirna-20190611-ju_trimmed_unmapped.out.mate1.fastq.gz
51.86 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed.bam.bai
3.24 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_SJ.out.tab
702.13 kB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_stats.txt
1.81 kB
prpf8-hela-scramble-sirna-20190611-ju_trimmed.bam
476.67 MB
iCount xlsites
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single.bed.gz
616.04 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_singleAndMulti.bed.gz
1.68 MB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_reads_single.bed.gz
716.43 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single.bedgraph
2.40 MB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_skipped.bam
2.93 kB
iCount xlsites
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_skipped.bam
2.93 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_singleAndMulti.bed.gz
1.59 MB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single.bed.gz
601.56 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_reads_single.bed.gz
699.43 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single.bedgraph
2.33 MB
iCount xlsites
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_singleAndMulti.bed.gz
1.50 MB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single.bed.gz
601.77 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_skipped.bam
2.93 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_reads_single.bed.gz
700.23 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single.bedgraph
2.34 MB
iCount xlsites
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_skipped.bam
3.11 kB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single.bedgraph
1.90 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_singleAndMulti.bed.gz
1.21 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single.bed.gz
494.43 kB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_reads_single.bed.gz
577.20 kB
iCount RNA-maps
results.tar.gz
662.03 kB
iCount xlsites
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_reads_single.bed.gz
485.58 kB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_skipped.bam
3.11 kB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single.bed.gz
417.58 kB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_singleAndMulti.bed.gz
1.09 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single.bedgraph
1.60 MB
iCount RNA-maps
results.tar.gz
628.63 kB
iCount xlsites
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single.bed.gz
1.67 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_reads_single.bed.gz
1.87 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_skipped.bam
3.10 kB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_singleAndMulti.bed.gz
2.86 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single.bedgraph
7.57 MB
iCount summary
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single_summary_subtype.tsv
1007 B
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single_summary_type.tsv
435 B
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single_summary_gene.tsv
917.94 kB
FASTQ file (single-end)
prpf8-hela-scramble-sirna-20190611-ju-2.fastq.gz
153.68 MB
fastqc
Directory
stderr.txt
1.36 kB
prpf8-hela-scramble-sirna-20190611-ju-2_fastqc.zip
566.23 kB
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju-4.fastq.gz
121.69 MB
prpf8-hela-scramble-sirna-20190611-ju-4_fastqc.zip
565.58 kB
stderr.txt
1.36 kB
K-mers
other_exon region.png
277.66 kB
kmer_frequency_ncRNA.tsv
5.78 kB
intron region.png
215.59 kB
utr3 region.png
134.84 kB
kmer_frequency_intron.tsv
5.22 kB
kmer_frequency_utr3.tsv
3.02 kB
positional_distribution_utr3.tsv
122.72 kB
kmer_frequency_other_exon.tsv
5.78 kB
kmer_frequency_genome.tsv
5.82 kB
positional_distribution_intron.tsv
197.60 kB
positional_distribution_ncRNA.tsv
340.98 kB
positional_distribution_other_exon.tsv
362.46 kB
positional_distribution_genome.tsv
485.60 kB
genome region.png
288.30 kB
ncRNA region.png
273.14 kB
K-mers
other_exon region.png
242.26 kB
positional_distribution_intron.tsv
204.41 kB
utr3 region.png
129.78 kB
kmer_frequency_ncRNA.tsv
5.80 kB
ncRNA region.png
312.75 kB
kmer_frequency_intron.tsv
5.11 kB
intron region.png
222.43 kB
positional_distribution_utr3.tsv
118.91 kB
kmer_frequency_utr3.tsv
3.25 kB
positional_distribution_ncRNA.tsv
358.07 kB
kmer_frequency_genome.tsv
5.80 kB
kmer_frequency_other_exon.tsv
5.88 kB
genome region.png
272.13 kB
positional_distribution_genome.tsv
503.30 kB
positional_distribution_other_exon.tsv
413.67 kB
K-mers
positional_distribution_intron.tsv
188.85 kB
kmer_frequency_intron.tsv
4.88 kB
positional_distribution_ncRNA.tsv
354.20 kB
ncRNA region.png
306.12 kB
kmer_frequency_utr3.tsv
3.09 kB
intron region.png
227.25 kB
positional_distribution_genome.tsv
496.42 kB
kmer_frequency_ncRNA.tsv
5.84 kB
positional_distribution_utr3.tsv
122.72 kB
kmer_frequency_genome.tsv
5.82 kB
utr3 region.png
148.65 kB
genome region.png
314.73 kB
other_exon region.png
290.18 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_other_exon.tsv
394.25 kB
K-mers
other_exon region.png
286.35 kB
kmer_frequency_intron.tsv
4.77 kB
positional_distribution_intron.tsv
166.09 kB
positional_distribution_ncRNA.tsv
336.28 kB
kmer_frequency_utr3.tsv
3.02 kB
positional_distribution_utr3.tsv
119.15 kB
kmer_frequency_other_exon.tsv
5.81 kB
ncRNA region.png
246.94 kB
utr3 region.png
138.67 kB
positional_distribution_genome.tsv
469.07 kB
genome region.png
313.53 kB
intron region.png
183.91 kB
positional_distribution_other_exon.tsv
342.62 kB
kmer_frequency_ncRNA.tsv
5.79 kB
kmer_frequency_genome.tsv
5.84 kB
K-mers
other_exon region.png
219.63 kB
positional_distribution_intron.tsv
290.42 kB
intron region.png
222.72 kB
ncRNA region.png
285.12 kB
kmer_frequency_genome.tsv
5.81 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_utr3.tsv
263.36 kB
kmer_frequency_intron.tsv
5.73 kB
positional_distribution_ncRNA.tsv
451.94 kB
kmer_frequency_utr3.tsv
5.41 kB
positional_distribution_other_exon.tsv
563.04 kB
genome region.png
281.35 kB
kmer_frequency_other_exon.tsv
5.87 kB
positional_distribution_genome.tsv
567.85 kB
utr3 region.png
224.10 kB
iCount RNA-maps
results.tar.gz
1.36 MB
iCount xlsites
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single.bed.gz
1.93 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_skipped.bam
3.55 kB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_singleAndMulti.bed.gz
3.27 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_reads_single.bed.gz
2.18 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single.bedgraph
8.81 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
706 B
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_fastqc.zip
552.32 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed.fastq.gz
180.20 MB
Cutadapt (single-end)
report.txt
708 B
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed.fastq.gz
126.56 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_fastqc.zip
563.19 kB
Cutadapt (single-end)
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed.fastq.gz
174.50 MB
report.txt
706 B
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_fastqc.zip
560.67 kB
Cutadapt (single-end)
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed.fastq.gz
168.25 MB
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_fastqc.zip
553.69 kB
report.txt
706 B
Cutadapt (single-end)
fastqc
Directory
report.txt
708 B
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed.fastq.gz
136.03 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_fastqc.zip
582.15 kB
Cutadapt (single-end)
report.txt
708 B
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed.fastq.gz
159.82 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_fastqc.zip
564.87 kB
Cutadapt (single-end)
prpf8-hela-scramble-sirna-20190611-ju_trimmed.fastq.gz
241.53 MB
fastqc
Directory
report.txt
705 B
prpf8-hela-scramble-sirna-20190611-ju_trimmed_fastqc.zip
594.37 kB
Cutadapt (single-end)
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed.fastq.gz
195.41 MB
fastqc
Directory
report.txt
702 B
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_fastqc.zip
616.14 kB
iCount xlsites
demux_NNNNATCCANNN_trimmed_singleAndMulti.bed.gz
4.59 MB
demux_NNNNATCCANNN_trimmed_single.bedgraph
10.56 MB
demux_NNNNATCCANNN_trimmed_skipped.bam
3.17 kB
demux_NNNNATCCANNN_trimmed_single.bed.gz
2.33 MB
iCount RNA-maps
demux_NNNNTCACANNN_trimmed_single.tar.gz
1.50 MB
iCount peaks
demux_NNNNATCCANNN_trimmed_single_scores.tsv.gz
2.19 MB
demux_NNNNATCCANNN_trimmed_single_peaks.bed.gz
699.97 kB
demux_NNNNATCCANNN_trimmed_single_peaks.bedgraph
2.51 MB
iCount peaks
demux_NNNNCAGAAATTNNNNN_trimmed_single_scores.tsv.gz
788.59 kB
demux_NNNNCAGAAATTNNNNN_trimmed_single_peaks.bedgraph
666.96 kB
demux_NNNNCAGAAATTNNNNN_trimmed_single_peaks.bed.gz
263.64 kB
STAR
demux_NNNNCAGAATGCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
28.60 MB
demux_NNNNCAGAATGCNNNNN_trimmed.bam.bai
3.35 MB
demux_NNNNCAGAATGCNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAATGCNNNNN_trimmed.bam
333.56 MB
demux_NNNNCAGAATGCNNNNN_trimmed.bw
2.20 MB
demux_NNNNCAGAATGCNNNNN_trimmed_SJ.out.tab
237.99 kB
STAR
demux_NNNNCAGAAAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
21.19 MB
demux_NNNNCAGAAAGGNNNNN_trimmed.bam.bai
3.06 MB
demux_NNNNCAGAAAGGNNNNN_trimmed.bw
1.63 MB
demux_NNNNCAGAAAGGNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_SJ.out.tab
144.89 kB
demux_NNNNCAGAAAGGNNNNN_trimmed.bam
244.14 MB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNCAGAAAGGNNNNN_trimmed.fastq.gz
119.79 MB
report.txt
690 B
demux_NNNNCAGAAAGGNNNNN_trimmed_fastqc.zip
572.43 kB
STAR
demux_NNNNCAGAATTANNNNN_trimmed.bam.bai
3.19 MB
demux_NNNNCAGAATTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
37.49 MB
demux_NNNNCAGAATTANNNNN_trimmed.bam
314.77 MB
demux_NNNNCAGAATTANNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAATTANNNNN_trimmed.bw
1.96 MB
demux_NNNNCAGAATTANNNNN_trimmed_SJ.out.tab
248.50 kB
STAR
demux_NNNNCAGAAATTNNNNN_trimmed.bam
383.47 MB
demux_NNNNCAGAAATTNNNNN_trimmed.bam.bai
3.19 MB
demux_NNNNCAGAAATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
39.73 MB
demux_NNNNCAGAAATTNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAAATTNNNNN_trimmed.bw
2.04 MB
demux_NNNNCAGAAATTNNNNN_trimmed_SJ.out.tab
323.24 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAAAGGNNNNN.fastq.gz
115.57 MB
stderr.txt
1.05 kB
demux_NNNNCAGAAAGGNNNNN_fastqc.zip
591.71 kB

PRPF8_HeLa_eiF4A3 siRNA_20180504_JU_3

iCount peaks
demux_NNNNCAGAACTGNNNNN_trimmed_single_scores.tsv.gz
833.01 kB
demux_NNNNCAGAACTGNNNNN_trimmed_single_peaks.bedgraph
640.04 kB
demux_NNNNCAGAACTGNNNNN_trimmed_single_peaks.bed.gz
250.78 kB
iCount summary
demux_NNNNCAGAACTGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
268 B
demux_NNNNCAGAACTGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAACTGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
758.79 kB
iCount xlsites
demux_NNNNCAGAACTGNNNNN_trimmed_single.bed.gz
763.58 kB
demux_NNNNCAGAACTGNNNNN_trimmed_singleAndMulti.bed.gz
2.05 MB
demux_NNNNCAGAACTGNNNNN_trimmed_skipped.bam
3.06 kB
demux_NNNNCAGAACTGNNNNN_trimmed_single.bedgraph
3.04 MB
STAR
demux_NNNNCAGAACTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
32.08 MB
demux_NNNNCAGAACTGNNNNN_trimmed.bam.bai
3.49 MB
demux_NNNNCAGAACTGNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAACTGNNNNN_trimmed.bw
2.40 MB
demux_NNNNCAGAACTGNNNNN_trimmed.bam
370.30 MB
demux_NNNNCAGAACTGNNNNN_trimmed_SJ.out.tab
232.14 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
690 B
demux_NNNNCAGAACTGNNNNN_trimmed.fastq.gz
172.30 MB
demux_NNNNCAGAACTGNNNNN_trimmed_fastqc.zip
566.69 kB
Reads (single-end)
demux_NNNNCAGAACTGNNNNN.fastq.gz
166.57 MB
fastqc
Directory
demux_NNNNCAGAACTGNNNNN_fastqc.zip
584.36 kB
stderr.txt
1.05 kB

PRPF8_HeLa_eiF4A3 siRNA_20180504_JU_2

iCount peaks
demux_NNNNCAGAATGCNNNNN_trimmed_single_peaks.bed.gz
248.13 kB
demux_NNNNCAGAATGCNNNNN_trimmed_single_peaks.bedgraph
633.49 kB
demux_NNNNCAGAATGCNNNNN_trimmed_single_scores.tsv.gz
808.74 kB
iCount xlsites
demux_NNNNCAGAATGCNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCAGAATGCNNNNN_trimmed_singleAndMulti.bed.gz
1.88 MB
demux_NNNNCAGAATGCNNNNN_trimmed_single.bed.gz
739.61 kB
demux_NNNNCAGAATGCNNNNN_trimmed_single.bedgraph
2.94 MB
iCount summary
demux_NNNNCAGAATGCNNNNN_trimmed_single_summary.tsv_summary_type.tsv
267 B
demux_NNNNCAGAATGCNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
740.30 kB
demux_NNNNCAGAATGCNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
642 B
Cutadapt (single-end)
fastqc
Directory
report.txt
690 B
demux_NNNNCAGAATGCNNNNN_trimmed.fastq.gz
162.38 MB
demux_NNNNCAGAATGCNNNNN_trimmed_fastqc.zip
562.72 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAATGCNNNNN_fastqc.zip
584.01 kB
stderr.txt
1.05 kB
demux_NNNNCAGAATGCNNNNN.fastq.gz
157.10 MB
STAR
demux_NNNNCAGAATGCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
28.60 MB
demux_NNNNCAGAATGCNNNNN_trimmed.bam.bai
3.35 MB
demux_NNNNCAGAATGCNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAATGCNNNNN_trimmed.bam
333.56 MB
demux_NNNNCAGAATGCNNNNN_trimmed.bw
2.20 MB
demux_NNNNCAGAATGCNNNNN_trimmed_SJ.out.tab
237.99 kB

RNA-maps (PRPF8_HeLa_Scramble siRNA_20180504_JU)

iCount RNA-maps
demux_NNNNATCCANNN_trimmed_single.tar.gz
1.46 MB

PRPF8_Hela_eiF4A3 siRNA_20190611_JU_2

K-mers
other_exon region.png
290.18 kB
positional_distribution_intron.tsv
188.85 kB
kmer_frequency_intron.tsv
4.88 kB
positional_distribution_ncRNA.tsv
354.20 kB
ncRNA region.png
306.12 kB
kmer_frequency_utr3.tsv
3.09 kB
intron region.png
227.25 kB
positional_distribution_genome.tsv
496.42 kB
kmer_frequency_ncRNA.tsv
5.84 kB
positional_distribution_utr3.tsv
122.72 kB
kmer_frequency_genome.tsv
5.82 kB
utr3 region.png
148.65 kB
genome region.png
314.73 kB
kmer_frequency_other_exon.tsv
5.86 kB
positional_distribution_other_exon.tsv
394.25 kB
iCount summary
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single_summary_gene.tsv
1019.66 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single_summary_type.tsv
438 B
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single_summary_subtype.tsv
1007 B
iCount RNA-maps
results.tar.gz
734.43 kB
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju-2.fastq.gz
161.82 MB
prpf8-hela-eif4a3-sirna-20190611-ju-2_fastqc.zip
559.09 kB
stderr.txt
1.32 kB
Paraclu
peaks.bed.gz
5.99 kB
STAR
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed.bam.bai
3.22 MB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_unmapped.out.mate1.fastq.gz
25.87 MB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_SJ.out.tab
192.30 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_stats.txt
1.81 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed.bam
314.84 MB
iCount xlsites
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_singleAndMulti.bed.gz
1.50 MB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single.bed.gz
601.77 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_skipped.bam
2.93 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_reads_single.bed.gz
700.23 kB
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_single.bedgraph
2.34 MB
Cutadapt (single-end)
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed.fastq.gz
168.25 MB
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju-2_trimmed_fastqc.zip
553.69 kB
report.txt
706 B

PRPF8_Hela_eiF4A3 siRNA_20190611_JU_3

FASTQ file (single-end)
prpf8-hela-eif4a3-sirna-20190611-ju-3.fastq.gz
173.27 MB
fastqc
Directory
stderr.txt
1.32 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_fastqc.zip
554.70 kB
STAR
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_unmapped.out.mate1.fastq.gz
29.34 MB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_stats.txt
1.81 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed.bam
355.35 MB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_SJ.out.tab
181.40 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed.bam.bai
3.40 MB
iCount RNA-maps
results.tar.gz
741.90 kB
iCount summary
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single_summary_type.tsv
439 B
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single_summary_subtype.tsv
1013 B
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single_summary_gene.tsv
1.02 MB
Paraclu
peaks.bed.gz
5.37 kB
iCount xlsites
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single.bed.gz
616.04 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_singleAndMulti.bed.gz
1.68 MB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_reads_single.bed.gz
716.43 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_single.bedgraph
2.40 MB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_skipped.bam
2.93 kB
K-mers
other_exon region.png
277.66 kB
kmer_frequency_ncRNA.tsv
5.78 kB
intron region.png
215.59 kB
utr3 region.png
134.84 kB
kmer_frequency_intron.tsv
5.22 kB
kmer_frequency_utr3.tsv
3.02 kB
positional_distribution_utr3.tsv
122.72 kB
kmer_frequency_other_exon.tsv
5.78 kB
kmer_frequency_genome.tsv
5.82 kB
positional_distribution_intron.tsv
197.60 kB
positional_distribution_ncRNA.tsv
340.98 kB
positional_distribution_other_exon.tsv
362.46 kB
positional_distribution_genome.tsv
485.60 kB
genome region.png
288.30 kB
ncRNA region.png
273.14 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
706 B
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed_fastqc.zip
552.32 kB
prpf8-hela-eif4a3-sirna-20190611-ju-3_trimmed.fastq.gz
180.20 MB

PRPF8_HeLa_Scramble siRNA_20180504_JU_4

Cutadapt (single-end)
fastqc
Directory
report.txt
692 B
demux_NNNNCAGAATTANNNNN_trimmed.fastq.gz
165.18 MB
demux_NNNNCAGAATTANNNNN_trimmed_fastqc.zip
503.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAATTANNNNN.fastq.gz
173.41 MB
demux_NNNNCAGAATTANNNNN_fastqc.zip
531.59 kB
stderr.txt
1.05 kB
iCount peaks
demux_NNNNCAGAATTANNNNN_trimmed_single_peaks.bed.gz
228.77 kB
demux_NNNNCAGAATTANNNNN_trimmed_single_scores.tsv.gz
725.42 kB
demux_NNNNCAGAATTANNNNN_trimmed_single_peaks.bedgraph
550.71 kB
iCount summary
demux_NNNNCAGAATTANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAATTANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
723.38 kB
demux_NNNNCAGAATTANNNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
iCount xlsites
demux_NNNNCAGAATTANNNNN_trimmed_single.bed.gz
651.43 kB
demux_NNNNCAGAATTANNNNN_trimmed_singleAndMulti.bed.gz
1.63 MB
demux_NNNNCAGAATTANNNNN_trimmed_single.bedgraph
2.55 MB
demux_NNNNCAGAATTANNNNN_trimmed_skipped.bam
2.91 kB
STAR
demux_NNNNCAGAATTANNNNN_trimmed.bam.bai
3.19 MB
demux_NNNNCAGAATTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
37.49 MB
demux_NNNNCAGAATTANNNNN_trimmed.bam
314.77 MB
demux_NNNNCAGAATTANNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAATTANNNNN_trimmed.bw
1.96 MB
demux_NNNNCAGAATTANNNNN_trimmed_SJ.out.tab
248.50 kB

PRPF8_HeLa_Scramble siRNA_20180504_JU

STAR
demux_NNNNATCCANNN_trimmed_unmapped.out.mate1.fastq.gz
44.36 MB
demux_NNNNATCCANNN_trimmed.bam.bai
3.87 MB
demux_NNNNATCCANNN_trimmed.bam
383.60 MB
demux_NNNNATCCANNN_trimmed_stats.txt
1.81 kB
demux_NNNNATCCANNN_trimmed_SJ.out.tab
701.71 kB
demux_NNNNATCCANNN_trimmed.bw
4.77 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNATCCANNN_trimmed.fastq.gz
172.88 MB
demux_NNNNATCCANNN_trimmed_fastqc.zip
575.36 kB
iCount summary
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_gene.tsv
986.91 kB
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_type.tsv
270 B
demux_NNNNATCCANNN_trimmed_single_summary.tsv_summary_subtype.tsv
651 B
Reads (single-end)
fastqc
Directory
demux_NNNNATCCANNN_fastqc.zip
595.95 kB
demux_NNNNATCCANNN.fastq.gz
175.16 MB
stderr.txt
975 B
iCount xlsites
demux_NNNNATCCANNN_trimmed_singleAndMulti.bed.gz
4.59 MB
demux_NNNNATCCANNN_trimmed_single.bedgraph
10.56 MB
demux_NNNNATCCANNN_trimmed_skipped.bam
3.17 kB
demux_NNNNATCCANNN_trimmed_single.bed.gz
2.33 MB
iCount peaks
demux_NNNNATCCANNN_trimmed_single_scores.tsv.gz
2.19 MB
demux_NNNNATCCANNN_trimmed_single_peaks.bed.gz
699.97 kB
demux_NNNNATCCANNN_trimmed_single_peaks.bedgraph
2.51 MB

PRPF8_HeLa_Scramble siRNA_20180504_JU_2

iCount summary
demux_NNNNCAGAAATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
738.42 kB
demux_NNNNCAGAAATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAGAAATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
642 B
iCount xlsites
demux_NNNNCAGAAATTNNNNN_trimmed_singleAndMulti.bed.gz
1.72 MB
demux_NNNNCAGAAATTNNNNN_trimmed_single.bedgraph
2.83 MB
demux_NNNNCAGAAATTNNNNN_trimmed_single.bed.gz
718.09 kB
demux_NNNNCAGAAATTNNNNN_trimmed_skipped.bam
3.69 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
692 B
demux_NNNNCAGAAATTNNNNN_trimmed.fastq.gz
194.37 MB
demux_NNNNCAGAAATTNNNNN_trimmed_fastqc.zip
514.00 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAAATTNNNNN.fastq.gz
200.82 MB
stderr.txt
1.05 kB
demux_NNNNCAGAAATTNNNNN_fastqc.zip
539.01 kB
iCount peaks
demux_NNNNCAGAAATTNNNNN_trimmed_single_scores.tsv.gz
788.59 kB
demux_NNNNCAGAAATTNNNNN_trimmed_single_peaks.bedgraph
666.96 kB
demux_NNNNCAGAAATTNNNNN_trimmed_single_peaks.bed.gz
263.64 kB
STAR
demux_NNNNCAGAAATTNNNNN_trimmed.bam
383.47 MB
demux_NNNNCAGAAATTNNNNN_trimmed.bam.bai
3.19 MB
demux_NNNNCAGAAATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
39.73 MB
demux_NNNNCAGAAATTNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAAATTNNNNN_trimmed.bw
2.04 MB
demux_NNNNCAGAAATTNNNNN_trimmed_SJ.out.tab
323.24 kB

RNA-maps (PRPF8_HeLa_eiF4A3 siRNA_20180504_JU)

iCount RNA-maps
demux_NNNNTCACANNN_trimmed_single.tar.gz
1.50 MB

RNA-maps (PRPF8_HeLa_Scramble siRNA_20180504_JU_2)

iCount RNA-maps
demux_NNNNCAGAAATTNNNNN_trimmed_single.tar.gz
786.62 kB

RNA-maps (PRPF8_HeLa_eiF4A3 siRNA_20180504_JU_3)

iCount RNA-maps
demux_NNNNCAGAACTGNNNNN_trimmed_single.tar.gz
830.33 kB

PRPF8_Hela_Scramble siRNA_20190611_JU

Paraclu
peaks.bed.gz
59.81 kB
K-mers
kmer_frequency_ncRNA.tsv
5.88 kB
kmer_frequency_intron.tsv
5.88 kB
other_exon region.png
208.43 kB
intron region.png
235.17 kB
positional_distribution_ncRNA.tsv
461.32 kB
positional_distribution_utr3.tsv
246.67 kB
positional_distribution_intron.tsv
321.15 kB
kmer_frequency_utr3.tsv
5.34 kB
kmer_frequency_genome.tsv
5.80 kB
genome region.png
272.72 kB
positional_distribution_genome.tsv
567.73 kB
ncRNA region.png
279.54 kB
kmer_frequency_other_exon.tsv
5.85 kB
utr3 region.png
219.01 kB
positional_distribution_other_exon.tsv
566.84 kB
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju.fastq.gz
243.80 MB
prpf8-hela-scramble-sirna-20190611-ju_fastqc.zip
622.58 kB
stderr.txt
1.32 kB
iCount summary
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single_summary_type.tsv
444 B
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single_summary_subtype.tsv
1.00 kB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single_summary_gene.tsv
1.21 MB
STAR
prpf8-hela-scramble-sirna-20190611-ju_trimmed_unmapped.out.mate1.fastq.gz
51.86 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed.bam.bai
3.24 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_SJ.out.tab
702.13 kB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_stats.txt
1.81 kB
prpf8-hela-scramble-sirna-20190611-ju_trimmed.bam
476.67 MB
iCount RNA-maps
results.tar.gz
1.36 MB
iCount xlsites
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single.bed.gz
1.93 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_skipped.bam
3.55 kB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_singleAndMulti.bed.gz
3.27 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_reads_single.bed.gz
2.18 MB
prpf8-hela-scramble-sirna-20190611-ju_trimmed_single.bedgraph
8.81 MB
Cutadapt (single-end)
prpf8-hela-scramble-sirna-20190611-ju_trimmed.fastq.gz
241.53 MB
fastqc
Directory
report.txt
705 B
prpf8-hela-scramble-sirna-20190611-ju_trimmed_fastqc.zip
594.37 kB

PRPF8_Hela_Scramble siRNA_20190611_JU_2

iCount summary
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single_summary_subtype.tsv
1009 B
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single_summary_type.tsv
435 B
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single_summary_gene.tsv
947.72 kB
Paraclu
peaks.bed.gz
4.64 kB
STAR
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed.bam.bai
3.00 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_unmapped.out.mate1.fastq.gz
22.60 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_stats.txt
1.81 kB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed.bam
305.92 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_SJ.out.tab
169.68 kB
iCount xlsites
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_skipped.bam
3.11 kB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single.bedgraph
1.90 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_singleAndMulti.bed.gz
1.21 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_single.bed.gz
494.43 kB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_reads_single.bed.gz
577.20 kB
iCount RNA-maps
results.tar.gz
662.03 kB
FASTQ file (single-end)
prpf8-hela-scramble-sirna-20190611-ju-2.fastq.gz
153.68 MB
fastqc
Directory
stderr.txt
1.36 kB
prpf8-hela-scramble-sirna-20190611-ju-2_fastqc.zip
566.23 kB
K-mers
other_exon region.png
286.35 kB
kmer_frequency_intron.tsv
4.77 kB
positional_distribution_intron.tsv
166.09 kB
positional_distribution_ncRNA.tsv
336.28 kB
kmer_frequency_utr3.tsv
3.02 kB
positional_distribution_utr3.tsv
119.15 kB
kmer_frequency_other_exon.tsv
5.81 kB
ncRNA region.png
246.94 kB
utr3 region.png
138.67 kB
positional_distribution_genome.tsv
469.07 kB
genome region.png
313.53 kB
intron region.png
183.91 kB
positional_distribution_other_exon.tsv
342.62 kB
kmer_frequency_ncRNA.tsv
5.79 kB
kmer_frequency_genome.tsv
5.84 kB
Cutadapt (single-end)
report.txt
708 B
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed.fastq.gz
159.82 MB
prpf8-hela-scramble-sirna-20190611-ju-2_trimmed_fastqc.zip
564.87 kB

PRPF8_Hela_Scramble siRNA_20190611_JU_3

Paraclu
peaks.bed.gz
3.14 kB
iCount summary
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single_summary_subtype.tsv
1004 B
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single_summary_type.tsv
436 B
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single_summary_gene.tsv
885.14 kB
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju-3.fastq.gz
130.52 MB
stderr.txt
1.36 kB
prpf8-hela-scramble-sirna-20190611-ju-3_fastqc.zip
582.78 kB
STAR
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed.bam.bai
2.93 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed.bam
255.80 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_SJ.out.tab
109.96 kB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_unmapped.out.mate1.fastq.gz
20.47 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_stats.txt
1.81 kB
iCount xlsites
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_reads_single.bed.gz
485.58 kB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_skipped.bam
3.11 kB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single.bed.gz
417.58 kB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_singleAndMulti.bed.gz
1.09 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_single.bedgraph
1.60 MB
iCount RNA-maps
results.tar.gz
628.63 kB
K-mers
kmer_frequency_ncRNA.tsv
5.76 kB
other_exon region.png
298.93 kB
positional_distribution_intron.tsv
155.13 kB
ncRNA region.png
253.48 kB
utr3 region.png
143.37 kB
intron region.png
171.76 kB
kmer_frequency_utr3.tsv
2.56 kB
kmer_frequency_genome.tsv
5.85 kB
kmer_frequency_other_exon.tsv
5.74 kB
kmer_frequency_intron.tsv
4.64 kB
positional_distribution_utr3.tsv
110.57 kB
positional_distribution_genome.tsv
431.24 kB
positional_distribution_other_exon.tsv
297.45 kB
positional_distribution_ncRNA.tsv
285.43 kB
genome region.png
269.59 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
708 B
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed.fastq.gz
136.03 MB
prpf8-hela-scramble-sirna-20190611-ju-3_trimmed_fastqc.zip
582.15 kB

PRPF8_Hela_eiF4A3 siRNA_20190611_JU_4

iCount RNA-maps
results.tar.gz
713.92 kB
Paraclu
peaks.bed.gz
6.68 kB
FASTQ file (single-end)
stderr.txt
1.32 kB
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju-4_fastqc.zip
563.11 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4.fastq.gz
167.85 MB
iCount summary
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single_summary_subtype.tsv
1006 B
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single_summary_gene.tsv
1.00 MB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single_summary_type.tsv
438 B
STAR
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_unmapped.out.mate1.fastq.gz
25.99 MB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed.bam.bai
3.31 MB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_SJ.out.tab
194.91 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_stats.txt
1.81 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed.bam
326.91 MB
iCount xlsites
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_skipped.bam
2.93 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_singleAndMulti.bed.gz
1.59 MB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single.bed.gz
601.56 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_reads_single.bed.gz
699.43 kB
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_single.bedgraph
2.33 MB
K-mers
other_exon region.png
242.26 kB
positional_distribution_intron.tsv
204.41 kB
utr3 region.png
129.78 kB
kmer_frequency_ncRNA.tsv
5.80 kB
ncRNA region.png
312.75 kB
kmer_frequency_intron.tsv
5.11 kB
intron region.png
222.43 kB
positional_distribution_utr3.tsv
118.91 kB
kmer_frequency_utr3.tsv
3.25 kB
positional_distribution_ncRNA.tsv
358.07 kB
kmer_frequency_genome.tsv
5.80 kB
kmer_frequency_other_exon.tsv
5.88 kB
genome region.png
272.13 kB
positional_distribution_genome.tsv
503.30 kB
positional_distribution_other_exon.tsv
413.67 kB
Cutadapt (single-end)
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed.fastq.gz
174.50 MB
report.txt
706 B
prpf8-hela-eif4a3-sirna-20190611-ju-4_trimmed_fastqc.zip
560.67 kB

PRPF8_Hela_Scramble siRNA_20190611_JU_4

K-mers
other_exon region.png
284.30 kB
kmer_frequency_intron.tsv
4.43 kB
positional_distribution_ncRNA.tsv
302.83 kB
kmer_frequency_ncRNA.tsv
5.55 kB
intron region.png
167.12 kB
kmer_frequency_genome.tsv
5.85 kB
positional_distribution_intron.tsv
149.20 kB
kmer_frequency_utr3.tsv
2.34 kB
utr3 region.png
152.20 kB
positional_distribution_utr3.tsv
99.54 kB
kmer_frequency_other_exon.tsv
5.72 kB
positional_distribution_genome.tsv
420.24 kB
genome region.png
294.69 kB
positional_distribution_other_exon.tsv
266.83 kB
ncRNA region.png
247.55 kB
iCount RNA-maps
results.tar.gz
651.54 kB
Paraclu
peaks.bed.gz
3.34 kB
iCount xlsites
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_skipped.bam
3.12 kB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_reads_single.bed.gz
515.66 kB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single.bedgraph
1.69 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_singleAndMulti.bed.gz
1.13 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single.bed.gz
442.89 kB
STAR
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_unmapped.out.mate1.fastq.gz
19.71 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed.bam.bai
2.98 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed.bam
239.71 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_SJ.out.tab
115.23 kB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_stats.txt
1.81 kB
iCount summary
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single_summary_subtype.tsv
1007 B
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single_summary_type.tsv
435 B
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_single_summary_gene.tsv
917.94 kB
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju-4.fastq.gz
121.69 MB
prpf8-hela-scramble-sirna-20190611-ju-4_fastqc.zip
565.58 kB
stderr.txt
1.36 kB
Cutadapt (single-end)
report.txt
708 B
fastqc
Directory
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed.fastq.gz
126.56 MB
prpf8-hela-scramble-sirna-20190611-ju-4_trimmed_fastqc.zip
563.19 kB

PRPF8_Hela_eiF4A3 siRNA_20190611_JU

iCount RNA-maps
results.tar.gz
1.26 MB
FASTQ file (single-end)
fastqc
Directory
prpf8-hela-eif4a3-sirna-20190611-ju.fastq.gz
196.66 MB
stderr.txt
1.28 kB
prpf8-hela-eif4a3-sirna-20190611-ju_fastqc.zip
652.61 kB
iCount summary
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single_summary_subtype.tsv
1023 B
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single_summary_type.tsv
441 B
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single_summary_gene.tsv
1.18 MB
Paraclu
peaks.bed.gz
48.12 kB
STAR
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_unmapped.out.mate1.fastq.gz
38.57 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed.bam
396.62 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_SJ.out.tab
638.56 kB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_stats.txt
1.81 kB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed.bam.bai
3.09 MB
iCount xlsites
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single.bed.gz
1.67 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_reads_single.bed.gz
1.87 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_skipped.bam
3.10 kB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_singleAndMulti.bed.gz
2.86 MB
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_single.bedgraph
7.57 MB
K-mers
other_exon region.png
219.63 kB
positional_distribution_intron.tsv
290.42 kB
intron region.png
222.72 kB
ncRNA region.png
285.12 kB
kmer_frequency_genome.tsv
5.81 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_utr3.tsv
263.36 kB
kmer_frequency_intron.tsv
5.73 kB
positional_distribution_ncRNA.tsv
451.94 kB
kmer_frequency_utr3.tsv
5.41 kB
positional_distribution_other_exon.tsv
563.04 kB
genome region.png
281.35 kB
kmer_frequency_other_exon.tsv
5.87 kB
positional_distribution_genome.tsv
567.85 kB
utr3 region.png
224.10 kB
Cutadapt (single-end)
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed.fastq.gz
195.41 MB
fastqc
Directory
report.txt
702 B
prpf8-hela-eif4a3-sirna-20190611-ju_trimmed_fastqc.zip
616.14 kB

PRPF8_HeLa_eiF4A3 siRNA_20180504_JU

Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNTCACANNN.fastq.gz
187.94 MB
demux_NNNNTCACANNN_fastqc.zip
641.67 kB
iCount peaks
demux_NNNNTCACANNN_trimmed_single_scores.tsv.gz
2.25 MB
demux_NNNNTCACANNN_trimmed_single_peaks.bed.gz
767.12 kB
demux_NNNNTCACANNN_trimmed_single_peaks.bedgraph
2.80 MB
iCount summary
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_type.tsv
270 B
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_gene.tsv
973.59 kB
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_subtype.tsv
651 B
iCount xlsites
demux_NNNNTCACANNN_trimmed_single.bed.gz
2.37 MB
demux_NNNNTCACANNN_trimmed_skipped.bam
3.22 kB
demux_NNNNTCACANNN_trimmed_singleAndMulti.bed.gz
4.65 MB
demux_NNNNTCACANNN_trimmed_single.bedgraph
10.85 MB
STAR
demux_NNNNTCACANNN_trimmed_SJ.out.tab
743.85 kB
demux_NNNNTCACANNN_trimmed_unmapped.out.mate1.fastq.gz
42.85 MB
demux_NNNNTCACANNN_trimmed.bam
434.28 MB
demux_NNNNTCACANNN_trimmed.bam.bai
3.86 MB
demux_NNNNTCACANNN_trimmed.bw
4.73 MB
demux_NNNNTCACANNN_trimmed_stats.txt
1.81 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNTCACANNN_trimmed_fastqc.zip
596.34 kB
demux_NNNNTCACANNN_trimmed.fastq.gz
187.37 MB

PRPF8_HeLa_eiF4A3 siRNA_20180504_JU_4

iCount peaks
demux_NNNNCAGAACGTNNNNN_trimmed_single_peaks.bed.gz
254.48 kB
demux_NNNNCAGAACGTNNNNN_trimmed_single_scores.tsv.gz
815.77 kB
demux_NNNNCAGAACGTNNNNN_trimmed_single_peaks.bedgraph
648.12 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAACGTNNNNN_fastqc.zip
579.95 kB
stderr.txt
1.05 kB
demux_NNNNCAGAACGTNNNNN.fastq.gz
165.22 MB
iCount summary
demux_NNNNCAGAACGTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
demux_NNNNCAGAACGTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
642 B
demux_NNNNCAGAACGTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
751.08 kB
iCount xlsites
demux_NNNNCAGAACGTNNNNN_trimmed_single.bed.gz
744.48 kB
demux_NNNNCAGAACGTNNNNN_trimmed_singleAndMulti.bed.gz
1.94 MB
demux_NNNNCAGAACGTNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCAGAACGTNNNNN_trimmed_single.bedgraph
2.96 MB
STAR
demux_NNNNCAGAACGTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
28.90 MB
demux_NNNNCAGAACGTNNNNN_trimmed.bam
351.74 MB
demux_NNNNCAGAACGTNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAACGTNNNNN_trimmed.bam.bai
3.37 MB
demux_NNNNCAGAACGTNNNNN_trimmed_SJ.out.tab
260.86 kB
demux_NNNNCAGAACGTNNNNN_trimmed.bw
2.26 MB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNCAGAACGTNNNNN_trimmed.fastq.gz
170.80 MB
demux_NNNNCAGAACGTNNNNN_trimmed_fastqc.zip
560.54 kB
report.txt
690 B

PRPF8_HeLa_Scramble siRNA_20180504_JU_3

iCount peaks
demux_NNNNCAGAAAGGNNNNN_trimmed_single_peaks.bed.gz
182.50 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_single_scores.tsv.gz
597.37 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_single_peaks.bedgraph
429.41 kB
iCount summary
demux_NNNNCAGAAAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAAAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
268 B
demux_NNNNCAGAAAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
661.97 kB
iCount xlsites
demux_NNNNCAGAAAGGNNNNN_trimmed_single.bed.gz
522.55 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_singleAndMulti.bed.gz
1.36 MB
demux_NNNNCAGAAAGGNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_single.bedgraph
2.04 MB
STAR
demux_NNNNCAGAAAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
21.19 MB
demux_NNNNCAGAAAGGNNNNN_trimmed.bam.bai
3.06 MB
demux_NNNNCAGAAAGGNNNNN_trimmed.bw
1.63 MB
demux_NNNNCAGAAAGGNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGAAAGGNNNNN_trimmed_SJ.out.tab
144.89 kB
demux_NNNNCAGAAAGGNNNNN_trimmed.bam
244.14 MB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNCAGAAAGGNNNNN_trimmed.fastq.gz
119.79 MB
report.txt
690 B
demux_NNNNCAGAAAGGNNNNN_trimmed_fastqc.zip
572.43 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAAAGGNNNNN.fastq.gz
115.57 MB
stderr.txt
1.05 kB
demux_NNNNCAGAAAGGNNNNN_fastqc.zip
591.71 kB