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Folder iconNeuroblastoma m6A miCLIP

Patrick Toolan-Kerr
May 9, 2018

No Sample

Cutadapt (single-end)
fastqc
Directory
report.txt
692 B
demux_NNNNTCGAGTTANNNNN_trimmed_fastqc.zip
484.96 kB
demux_NNNNTCGAGTTANNNNN_trimmed.fastq.gz
49.10 MB
iCount peaks
demux_NNNNCACAGAGGNNNNN_unique_peaks.bedgraph
40.60 kB
demux_NNNNCACAGAGGNNNNN_unique_scores.tsv.gz
177.01 kB
demux_NNNNCACAGAGGNNNNN_unique_peaks.bed.gz
24.59 kB
iCount summary
demux_NNNNCACAGATTNNNNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNCACAGATTNNNNN_unique_summary.tsv_summary_gene.tsv
369.09 kB
demux_NNNNCACAGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
635 B
Paraclu
peaks.bed.gz
4.51 kB
iCount group
fail_group_grouped.bedgraph
1012.57 kB
fail_group_grouped.bed.gz
267.84 kB
Paraclu
peaks.bed.gz
1.31 kB
Paraclu
peaks.bed.gz
35 B
Paraclu
peaks.bed.gz
4.00 kB
iCount RNA-maps
results.tar.gz
546.96 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATACGTTANNNNN.fastq.gz
113.26 MB
stderr.txt
1.05 kB
demux_NNNNATACGTTANNNNN_fastqc.zip
440.62 kB
iCount RNA-maps
results.tar.gz
581.30 kB
iCount RNA-maps
results.tar.gz
487.10 kB
Reads (single-end)
demux_NNNNTCGAGCTGNNNNN.fastq.gz
57.86 MB
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNTCGAGCTGNNNNN_fastqc.zip
426.43 kB
Reads (single-end)
stderr.txt
875 B
fastqc
Directory
demux_nomatch.fastq.gz
5.66 GB
demux_nomatch_fastqc.zip
585.44 kB
STAR
demux_NNNNATACGAGGNNNNN_trimmed.bam.bai
3.96 MB
demux_NNNNATACGAGGNNNNN_trimmed.bam
701.98 MB
demux_NNNNATACGAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
14.99 MB
demux_NNNNATACGAGGNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNATACGAGGNNNNN_trimmed_SJ.out.tab
166.21 kB
STAR
demux_NNNNCACAGCTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
10.46 MB
demux_NNNNCACAGCTGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGCTGNNNNN_trimmed_SJ.out.tab
54.11 kB
demux_NNNNCACAGCTGNNNNN_trimmed.bam.bai
2.79 MB
demux_NNNNCACAGCTGNNNNN_trimmed.bam
440.34 MB
STAR
demux_NNNNCACAGTGCNNNNN_trimmed.bam
501.97 MB
demux_NNNNCACAGTGCNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGTGCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
12.01 MB
demux_NNNNCACAGTGCNNNNN_trimmed.bam.bai
3.00 MB
demux_NNNNCACAGTGCNNNNN_trimmed_SJ.out.tab
64.99 kB
iCount summary
demux_NNNNATACGTGCNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNATACGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
684.95 kB
demux_NNNNATACGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
636 B
iCount summary
demux_NNNNCACAGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
401.75 kB
demux_NNNNCACAGCTGNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNCACAGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
633 B
iCount peaks
demux_NNNNTCGAGAGGNNNNN_unique_peaks.bed.gz
59.81 kB
demux_NNNNTCGAGAGGNNNNN_unique_scores.tsv.gz
518.64 kB
demux_NNNNTCGAGAGGNNNNN_unique_peaks.bedgraph
121.66 kB
Paraclu
peaks.bed.gz
2.63 kB
iCount clusters
fail_group_grouped_clustered.bed.gz
46.82 kB
fail_group_grouped_clustered.bedgraph
72.75 kB
iCount peaks
demux_NNNNTCGAGCTGNNNNN_unique_peaks.bed.gz
39.15 kB
demux_NNNNTCGAGCTGNNNNN_unique_peaks.bedgraph
73.54 kB
demux_NNNNTCGAGCTGNNNNN_unique_scores.tsv.gz
332.96 kB
iCount RNA-maps
results.tar.gz
453.39 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
866 B
Upload iCount sample annotation
miclip_annotation_template_UN1711.2_PTK.xlsx
19.20 kB
miclip_annotation_template_UN1711.2_PTK.tab.gz
1.18 kB
iCount xlsites
demux_NNNNATACGTTANNNNN_skipped.bam
1.58 MB
demux_NNNNATACGTTANNNNN_unique.bed.gz
459.28 kB
demux_NNNNATACGTTANNNNN_multi.bed.gz
2.25 MB
demux_NNNNATACGTTANNNNN_unique.bedgraph
1.79 MB
iCount summary
demux_NNNNATACGAGGNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNATACGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
713.44 kB
demux_NNNNATACGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
639 B
iCount RNA-maps
results.tar.gz
482.17 kB
iCount RNA-maps
results.tar.gz
444.68 kB
Paraclu
peaks.bed.gz
4.50 kB
iCount RNA-maps
results.tar.gz
585.55 kB
Paraclu
peaks.bed.gz
1.34 kB
iCount xlsites
demux_NNNNCACAGCTGNNNNN_trimmed_single.bed.gz
165.03 kB
demux_NNNNCACAGCTGNNNNN_trimmed_single.bedgraph
606.62 kB
demux_NNNNCACAGCTGNNNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCACAGCTGNNNNN_trimmed_singleAndMulti.bed.gz
1.04 MB
demux_NNNNCACAGCTGNNNNN_trimmed_reads_single.bed.gz
189.15 kB
Paraclu
peaks.bed.gz
3.21 kB
iCount xlsites
demux_NNNNATACGTTANNNNN_trimmed_skipped.bam
3.41 kB
demux_NNNNATACGTTANNNNN_trimmed_single.bed.gz
506.53 kB
demux_NNNNATACGTTANNNNN_trimmed_singleAndMulti.bed.gz
2.53 MB
demux_NNNNATACGTTANNNNN_trimmed_single.bedgraph
1.98 MB
demux_NNNNATACGTTANNNNN_trimmed_reads_single.bed.gz
578.83 kB
iCount xlsites
demux_NNNNTCGAGCTGNNNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_reads_single.bed.gz
319.84 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_single.bed.gz
282.28 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_singleAndMulti.bed.gz
1.63 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_single.bedgraph
1.06 MB
iCount xlsites
demux_NNNNATACGAGGNNNNN_trimmed_skipped.bam
3.25 kB
demux_NNNNATACGAGGNNNNN_trimmed_single.bed.gz
495.44 kB
demux_NNNNATACGAGGNNNNN_trimmed_single.bedgraph
1.93 MB
demux_NNNNATACGAGGNNNNN_trimmed_reads_single.bed.gz
565.12 kB
demux_NNNNATACGAGGNNNNN_trimmed_singleAndMulti.bed.gz
2.44 MB
STAR
demux_NNNNCACAGCTGNNNNN_unmapped.out.mate1.fastq.gz
11.94 MB
demux_NNNNCACAGCTGNNNNN_stats.txt
1.80 kB
demux_NNNNCACAGCTGNNNNN.bam.bai
2.66 MB
demux_NNNNCACAGCTGNNNNN_SJ.out.tab
50.03 kB
demux_NNNNCACAGCTGNNNNN.bam
432.81 MB
iCount xlsites
demux_NNNNATACGAGGNNNNN_unique.bed.gz
454.99 kB
demux_NNNNATACGAGGNNNNN_skipped.bam
1.21 MB
demux_NNNNATACGAGGNNNNN_multi.bed.gz
2.20 MB
demux_NNNNATACGAGGNNNNN_unique.bedgraph
1.78 MB
iCount xlsites
demux_NNNNTCGAGCTGNNNNN_unique.bed.gz
257.41 kB
demux_NNNNTCGAGCTGNNNNN_multi.bed.gz
1.48 MB
demux_NNNNTCGAGCTGNNNNN_unique.bedgraph
984.20 kB
demux_NNNNTCGAGCTGNNNNN_skipped.bam
808.05 kB
STAR
demux_NNNNATACGCTGNNNNN_unmapped.out.mate1.fastq.gz
18.58 MB
demux_NNNNATACGCTGNNNNN.bam.bai
3.68 MB
demux_NNNNATACGCTGNNNNN.bam
717.32 MB
demux_NNNNATACGCTGNNNNN_stats.txt
1.81 kB
demux_NNNNATACGCTGNNNNN_SJ.out.tab
143.76 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGTTTCCGTNNNNN.fastq.gz
44.63 kB
stderr.txt
158 B
demux_NNNNGTTTCCGTNNNNN_fastqc.zip
526.87 kB
iCount xlsites
demux_NNNNCACAGTGCNNNNN_skipped.bam
785.00 kB
demux_NNNNCACAGTGCNNNNN_unique.bed.gz
184.03 kB
demux_NNNNCACAGTGCNNNNN_unique.bedgraph
680.04 kB
demux_NNNNCACAGTGCNNNNN_multi.bed.gz
1.08 MB
iCount xlsites
demux_NNNNCACAGTTANNNNN_trimmed_single.bed.gz
210.58 kB
demux_NNNNCACAGTTANNNNN_trimmed_reads_single.bed.gz
244.10 kB
demux_NNNNCACAGTTANNNNN_trimmed_singleAndMulti.bed.gz
1.21 MB
demux_NNNNCACAGTTANNNNN_trimmed_single.bedgraph
788.19 kB
demux_NNNNCACAGTTANNNNN_trimmed_skipped.bam
3.81 kB
iCount xlsites
demux_NNNNTCGAGAGGNNNNN_trimmed_singleAndMulti.bed.gz
2.37 MB
demux_NNNNTCGAGAGGNNNNN_trimmed_single.bed.gz
475.40 kB
demux_NNNNTCGAGAGGNNNNN_trimmed_skipped.bam
3.44 kB
demux_NNNNTCGAGAGGNNNNN_trimmed_reads_single.bed.gz
544.26 kB
demux_NNNNTCGAGAGGNNNNN_trimmed_single.bedgraph
1.85 MB
iCount RNA-maps
results.tar.gz
568.95 kB
iCount RNA-maps
results.tar.gz
552.51 kB
iCount xlsites
demux_NNNNTCGAGATTNNNNN_trimmed_skipped.bam
3.28 kB
demux_NNNNTCGAGATTNNNNN_trimmed_singleAndMulti.bed.gz
2.42 MB
demux_NNNNTCGAGATTNNNNN_trimmed_single.bed.gz
458.29 kB
demux_NNNNTCGAGATTNNNNN_trimmed_reads_single.bed.gz
522.41 kB
demux_NNNNTCGAGATTNNNNN_trimmed_single.bedgraph
1.76 MB
iCount xlsites
demux_NNNNATACGTGCNNNNN_trimmed_single.bed.gz
442.78 kB
demux_NNNNATACGTGCNNNNN_trimmed_skipped.bam
3.09 kB
demux_NNNNATACGTGCNNNNN_trimmed_singleAndMulti.bed.gz
2.33 MB
demux_NNNNATACGTGCNNNNN_trimmed_single.bedgraph
1.70 MB
demux_NNNNATACGTGCNNNNN_trimmed_reads_single.bed.gz
501.31 kB
iCount RNA-maps
results.tar.gz
550.38 kB
iCount xlsites
demux_NNNNTCGAGTGCNNNNN_trimmed_singleAndMulti.bed.gz
1.94 MB
demux_NNNNTCGAGTGCNNNNN_trimmed_reads_single.bed.gz
417.54 kB
demux_NNNNTCGAGTGCNNNNN_trimmed_single.bed.gz
365.79 kB
demux_NNNNTCGAGTGCNNNNN_trimmed_skipped.bam
3.26 kB
demux_NNNNTCGAGTGCNNNNN_trimmed_single.bedgraph
1.40 MB
iCount xlsites
demux_NNNNGTTTCCGTNNNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNGTTTCCGTNNNNN_trimmed_singleAndMulti.bed.gz
5.05 kB
demux_NNNNGTTTCCGTNNNNN_trimmed_single.bed.gz
347 B
demux_NNNNGTTTCCGTNNNNN_trimmed_single.bedgraph
957 B
demux_NNNNGTTTCCGTNNNNN_trimmed_reads_single.bed.gz
378 B
iCount RNA-maps
results.tar.gz
59.43 kB
iCount xlsites
demux_NNNNATACGCTGNNNNN_trimmed_single.bed.gz
432.37 kB
demux_NNNNATACGCTGNNNNN_trimmed_skipped.bam
3.38 kB
demux_NNNNATACGCTGNNNNN_trimmed_singleAndMulti.bed.gz
2.23 MB
demux_NNNNATACGCTGNNNNN_trimmed_single.bedgraph
1.66 MB
demux_NNNNATACGCTGNNNNN_trimmed_reads_single.bed.gz
490.41 kB
iCount xlsites
demux_NNNNTCGAGTTANNNNN_trimmed_skipped.bam
3.82 kB
demux_NNNNTCGAGTTANNNNN_trimmed_singleAndMulti.bed.gz
1.47 MB
demux_NNNNTCGAGTTANNNNN_trimmed_single.bed.gz
258.47 kB
demux_NNNNTCGAGTTANNNNN_trimmed_reads_single.bed.gz
293.92 kB
demux_NNNNTCGAGTTANNNNN_trimmed_single.bedgraph
991.85 kB
iCount xlsites
demux_NNNNCACAGTGCNNNNN_trimmed_reads_single.bed.gz
232.92 kB
demux_NNNNCACAGTGCNNNNN_trimmed_skipped.bam
3.69 kB
demux_NNNNCACAGTGCNNNNN_trimmed_singleAndMulti.bed.gz
1.20 MB
demux_NNNNCACAGTGCNNNNN_trimmed_single.bed.gz
202.76 kB
demux_NNNNCACAGTGCNNNNN_trimmed_single.bedgraph
752.91 kB
iCount xlsites
demux_NNNNCACAGAGGNNNNN_trimmed_single.bed.gz
137.63 kB
demux_NNNNCACAGAGGNNNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCACAGAGGNNNNN_trimmed_reads_single.bed.gz
158.35 kB
demux_NNNNCACAGAGGNNNNN_trimmed_singleAndMulti.bed.gz
895.94 kB
demux_NNNNCACAGAGGNNNNN_trimmed_single.bedgraph
503.33 kB
iCount summary
demux_NNNNTCGAGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
562.15 kB
demux_NNNNTCGAGCTGNNNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNTCGAGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
635 B
iCount xlsites
demux_NNNNCACAGATTNNNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCACAGATTNNNNN_trimmed_singleAndMulti.bed.gz
1019.59 kB
demux_NNNNCACAGATTNNNNN_trimmed_single.bedgraph
569.51 kB
demux_NNNNCACAGATTNNNNN_trimmed_reads_single.bed.gz
179.33 kB
demux_NNNNCACAGATTNNNNN_trimmed_single.bed.gz
155.54 kB
iCount RNA-maps
results.tar.gz
454.26 kB
Paraclu
peaks.bed.gz
1017 B
Paraclu
peaks.bed.gz
1.52 kB
STAR
demux_NNNNGTTTCCGTNNNNN.bam
256.44 kB
demux_NNNNGTTTCCGTNNNNN_stats.txt
1.78 kB
demux_NNNNGTTTCCGTNNNNN.bam.bai
1.17 MB
demux_NNNNGTTTCCGTNNNNN_unmapped.out.mate1.fastq.gz
22.23 kB
demux_NNNNGTTTCCGTNNNNN_SJ.out.tab
324 B
iCount xlsites
demux_NNNNTCGAGTTANNNNN_skipped.bam
715.14 kB
demux_NNNNTCGAGTTANNNNN_multi.bed.gz
1.34 MB
demux_NNNNTCGAGTTANNNNN_unique.bed.gz
235.55 kB
demux_NNNNTCGAGTTANNNNN_unique.bedgraph
902.31 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGAGTTANNNNN.fastq.gz
52.58 MB
stderr.txt
1.05 kB
demux_NNNNTCGAGTTANNNNN_fastqc.zip
461.88 kB
iCount peaks
fail_group_grouped_scores.tsv.gz
341.20 kB
fail_group_grouped_peaks.bed.gz
53.18 kB
fail_group_grouped_peaks.bedgraph
95.19 kB
iCount summary
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_gene.tsv
690.02 kB
iCount summary
demux_NNNNATACGTTANNNNN_unique_summary.tsv_summary_gene.tsv
708.85 kB
demux_NNNNATACGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNATACGTTANNNNN_unique_summary.tsv_summary_type.tsv
268 B
STAR
demux_NNNNATACGAGGNNNNN.bam
687.11 MB
demux_NNNNATACGAGGNNNNN_unmapped.out.mate1.fastq.gz
17.33 MB
demux_NNNNATACGAGGNNNNN.bam.bai
3.81 MB
demux_NNNNATACGAGGNNNNN_SJ.out.tab
156.47 kB
demux_NNNNATACGAGGNNNNN_stats.txt
1.81 kB
iCount xlsites
demux_NNNNCACAGAGGNNNNN_skipped.bam
429.17 kB
demux_NNNNCACAGAGGNNNNN_unique.bedgraph
460.04 kB
demux_NNNNCACAGAGGNNNNN_unique.bed.gz
126.26 kB
demux_NNNNCACAGAGGNNNNN_multi.bed.gz
818.13 kB
iCount xlsites
demux_NNNNTCGAGATTNNNNN_multi.bed.gz
2.14 MB
demux_NNNNTCGAGATTNNNNN_skipped.bam
1.72 MB
demux_NNNNTCGAGATTNNNNN_unique.bedgraph
1.57 MB
demux_NNNNTCGAGATTNNNNN_unique.bed.gz
410.48 kB
iCount summary
demux_NNNNTCGAGAGGNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTCGAGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNTCGAGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
700.24 kB
iCount xlsites
demux_NNNNTCGAGTGCNNNNN_multi.bed.gz
1.76 MB
demux_NNNNTCGAGTGCNNNNN_skipped.bam
930.56 kB
demux_NNNNTCGAGTGCNNNNN_unique.bedgraph
1.28 MB
demux_NNNNTCGAGTGCNNNNN_unique.bed.gz
335.29 kB
iCount summary
demux_NNNNTCGAGTTANNNNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNTCGAGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNTCGAGTTANNNNN_unique_summary.tsv_summary_gene.tsv
519.58 kB
iCount summary
demux_NNNNCACAGTTANNNNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNCACAGTTANNNNN_unique_summary.tsv_summary_gene.tsv
458.82 kB
demux_NNNNCACAGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
iCount summary
demux_NNNNGTTTCCGTNNNNN_unique_summary.tsv_summary_type.tsv
137 B
demux_NNNNGTTTCCGTNNNNN_unique_summary.tsv_summary_subtype.tsv
234 B
demux_NNNNGTTTCCGTNNNNN_unique_summary.tsv_summary_gene.tsv
482 B
iCount xlsites
demux_NNNNATACGATTNNNNN_multi.bed.gz
2.29 MB
demux_NNNNATACGATTNNNNN_unique.bed.gz
471.80 kB
demux_NNNNATACGATTNNNNN_unique.bedgraph
1.84 MB
demux_NNNNATACGATTNNNNN_skipped.bam
1.77 MB
iCount RNA-maps
results.tar.gz
581.94 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGAGAGGNNNNN.fastq.gz
79.65 MB
demux_NNNNTCGAGAGGNNNNN_fastqc.zip
393.14 kB
stderr.txt
1.05 kB
Reads (single-end)
demux_NNNNATACGATTNNNNN.fastq.gz
130.62 MB
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNATACGATTNNNNN_fastqc.zip
429.38 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGAGATTNNNNN.fastq.gz
137.29 MB
stderr.txt
1.05 kB
demux_NNNNTCGAGATTNNNNN_fastqc.zip
428.38 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNCACAGAGGNNNNN.fastq.gz
41.90 MB
demux_NNNNCACAGAGGNNNNN_fastqc.zip
412.95 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATACGAGGNNNNN.fastq.gz
88.18 MB
demux_NNNNATACGAGGNNNNN_fastqc.zip
419.10 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCACAGATTNNNNN.fastq.gz
85.82 MB
stderr.txt
1.05 kB
demux_NNNNCACAGATTNNNNN_fastqc.zip
400.09 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.52 kB
L3modified_merged_GAM599A31-A60_S27_L008_R1_001.fastq.gz
9.34 GB
L3modified_merged_GAM599A31-A60_S27_L008_R1_001_fastqc.zip
591.98 kB
iCount peaks
demux_NNNNATACGTTANNNNN_unique_peaks.bed.gz
65.93 kB
demux_NNNNATACGTTANNNNN_unique_peaks.bedgraph
136.11 kB
demux_NNNNATACGTTANNNNN_unique_scores.tsv.gz
539.10 kB
iCount peaks
demux_NNNNCACAGTTANNNNN_unique_scores.tsv.gz
256.40 kB
demux_NNNNCACAGTTANNNNN_unique_peaks.bedgraph
65.10 kB
demux_NNNNCACAGTTANNNNN_unique_peaks.bed.gz
38.04 kB
iCount xlsites
demux_NNNNCACAGATTNNNNN_skipped.bam
881.04 kB
demux_NNNNCACAGATTNNNNN_unique.bed.gz
137.41 kB
demux_NNNNCACAGATTNNNNN_multi.bed.gz
903.71 kB
demux_NNNNCACAGATTNNNNN_unique.bedgraph
499.32 kB
STAR
demux_NNNNATACGTTANNNNN_unmapped.out.mate1.fastq.gz
36.63 MB
demux_NNNNATACGTTANNNNN_SJ.out.tab
169.44 kB
demux_NNNNATACGTTANNNNN_stats.txt
1.81 kB
demux_NNNNATACGTTANNNNN.bam
751.59 MB
demux_NNNNATACGTTANNNNN.bam.bai
3.84 MB
iCount summary
demux_NNNNCACAGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
628 B
demux_NNNNCACAGAGGNNNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNCACAGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
356.15 kB
STAR
demux_NNNNCACAGAGGNNNNN_unmapped.out.mate1.fastq.gz
7.99 MB
demux_NNNNCACAGAGGNNNNN_stats.txt
1.80 kB
demux_NNNNCACAGAGGNNNNN.bam
282.35 MB
demux_NNNNCACAGAGGNNNNN.bam.bai
2.48 MB
demux_NNNNCACAGAGGNNNNN_SJ.out.tab
41.73 kB
STAR
demux_NNNNTCGAGAGGNNNNN_unmapped.out.mate1.fastq.gz
16.54 MB
demux_NNNNTCGAGAGGNNNNN.bam
581.50 MB
demux_NNNNTCGAGAGGNNNNN_SJ.out.tab
142.29 kB
demux_NNNNTCGAGAGGNNNNN_stats.txt
1.81 kB
demux_NNNNTCGAGAGGNNNNN.bam.bai
3.84 MB
STAR
demux_NNNNATACGTGCNNNNN_SJ.out.tab
147.86 kB
demux_NNNNATACGTGCNNNNN.bam.bai
3.74 MB
demux_NNNNATACGTGCNNNNN_unmapped.out.mate1.fastq.gz
18.27 MB
demux_NNNNATACGTGCNNNNN_stats.txt
1.81 kB
demux_NNNNATACGTGCNNNNN.bam
725.50 MB
iCount summary
demux_NNNNTCGAGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNTCGAGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
622.88 kB
demux_NNNNTCGAGTGCNNNNN_unique_summary.tsv_summary_type.tsv
266 B
iCount xlsites
demux_NNNNATACGCTGNNNNN_unique.bed.gz
392.98 kB
demux_NNNNATACGCTGNNNNN_skipped.bam
1.24 MB
demux_NNNNATACGCTGNNNNN_unique.bedgraph
1.51 MB
demux_NNNNATACGCTGNNNNN_multi.bed.gz
2.00 MB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGAGTGCNNNNN_fastqc.zip
418.97 kB
stderr.txt
1.05 kB
demux_NNNNTCGAGTGCNNNNN.fastq.gz
70.45 MB
Reads (single-end)
demux_NNNNATACGTGCNNNNN.fastq.gz
90.57 MB
fastqc
Directory
demux_NNNNATACGTGCNNNNN_fastqc.zip
408.85 kB
stderr.txt
1.05 kB
iCount xlsites
demux_NNNNGTTTCCGTNNNNN_multi.bed.gz
4.36 kB
demux_NNNNGTTTCCGTNNNNN_skipped.bam
3.22 kB
demux_NNNNGTTTCCGTNNNNN_unique.bed.gz
274 B
demux_NNNNGTTTCCGTNNNNN_unique.bedgraph
602 B
iCount annotate
fail_group_grouped_annotated.bed.gz
397.55 kB
fail_group_grouped_annotated.bedgraph
1012.57 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
692 B
demux_NNNNATACGTTANNNNN_trimmed.fastq.gz
102.58 MB
demux_NNNNATACGTTANNNNN_trimmed_fastqc.zip
466.71 kB
Cutadapt (single-end)
demux_NNNNGTTTCCGTNNNNN_trimmed.fastq.gz
42.82 kB
fastqc
Directory
report.txt
690 B
demux_NNNNGTTTCCGTNNNNN_trimmed_fastqc.zip
600.71 kB
iCount xlsites
demux_NNNNATACGATTNNNNN_trimmed_skipped.bam
3.77 kB
demux_NNNNATACGATTNNNNN_trimmed_single.bed.gz
522.66 kB
demux_NNNNATACGATTNNNNN_trimmed_reads_single.bed.gz
596.72 kB
demux_NNNNATACGATTNNNNN_trimmed_single.bedgraph
2.04 MB
demux_NNNNATACGATTNNNNN_trimmed_singleAndMulti.bed.gz
2.58 MB
Paraclu
peaks.bed.gz
4.76 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCACAGTGCNNNNN.fastq.gz
68.94 MB
stderr.txt
1.10 kB
demux_NNNNCACAGTGCNNNNN_fastqc.zip
414.69 kB
Paraclu
peaks.bed.gz
2.02 kB
iCount summary
demux_NNNNCACAGCTGNNNNN_trimmed_single_summary_type.tsv
430 B
demux_NNNNCACAGCTGNNNNN_trimmed_single_summary_subtype.tsv
988 B
demux_NNNNCACAGCTGNNNNN_trimmed_single_summary_gene.tsv
597.29 kB
iCount summary
demux_NNNNATACGTTANNNNN_trimmed_single_summary_subtype.tsv
988 B
demux_NNNNATACGTTANNNNN_trimmed_single_summary_gene.tsv
1.04 MB
demux_NNNNATACGTTANNNNN_trimmed_single_summary_type.tsv
433 B
iCount summary
demux_NNNNATACGCTGNNNNN_trimmed_single_summary_subtype.tsv
993 B
demux_NNNNATACGCTGNNNNN_trimmed_single_summary_gene.tsv
1.01 MB
demux_NNNNATACGCTGNNNNN_trimmed_single_summary_type.tsv
433 B
iCount summary
demux_NNNNTCGAGCTGNNNNN_trimmed_single_summary_type.tsv
428 B
demux_NNNNTCGAGCTGNNNNN_trimmed_single_summary_gene.tsv
836.23 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_single_summary_subtype.tsv
984 B
iCount summary
demux_NNNNATACGAGGNNNNN_trimmed_single_summary_subtype.tsv
990 B
demux_NNNNATACGAGGNNNNN_trimmed_single_summary_type.tsv
432 B
demux_NNNNATACGAGGNNNNN_trimmed_single_summary_gene.tsv
1.04 MB
Paraclu
peaks.bed.gz
4.31 kB
iCount summary
demux_NNNNTCGAGTGCNNNNN_trimmed_single_summary_type.tsv
433 B
demux_NNNNTCGAGTGCNNNNN_trimmed_single_summary_subtype.tsv
988 B
demux_NNNNTCGAGTGCNNNNN_trimmed_single_summary_gene.tsv
932.50 kB
iCount summary
demux_NNNNCACAGTTANNNNN_trimmed_single_summary_type.tsv
426 B
demux_NNNNCACAGTTANNNNN_trimmed_single_summary_subtype.tsv
987 B
demux_NNNNCACAGTTANNNNN_trimmed_single_summary_gene.tsv
691.77 kB
iCount summary
demux_NNNNTCGAGAGGNNNNN_trimmed_single_summary_gene.tsv
1.01 MB
demux_NNNNTCGAGAGGNNNNN_trimmed_single_summary_subtype.tsv
996 B
demux_NNNNTCGAGAGGNNNNN_trimmed_single_summary_type.tsv
436 B
iCount summary
demux_NNNNTCGAGATTNNNNN_trimmed_single_summary_type.tsv
433 B
demux_NNNNTCGAGATTNNNNN_trimmed_single_summary_subtype.tsv
979 B
demux_NNNNTCGAGATTNNNNN_trimmed_single_summary_gene.tsv
1.01 MB
Paraclu
peaks.bed.gz
4.28 kB
iCount summary
demux_NNNNATACGTGCNNNNN_trimmed_single_summary_gene.tsv
1022.69 kB
demux_NNNNATACGTGCNNNNN_trimmed_single_summary_type.tsv
434 B
demux_NNNNATACGTGCNNNNN_trimmed_single_summary_subtype.tsv
993 B
Paraclu
peaks.bed.gz
4.33 kB
iCount summary
demux_NNNNGTTTCCGTNNNNN_trimmed_single_summary_type.tsv
237 B
demux_NNNNGTTTCCGTNNNNN_trimmed_single_summary_subtype.tsv
423 B
demux_NNNNGTTTCCGTNNNNN_trimmed_single_summary_gene.tsv
1.00 kB
iCount summary
demux_NNNNTCGAGTTANNNNN_trimmed_single_summary_subtype.tsv
988 B
demux_NNNNTCGAGTTANNNNN_trimmed_single_summary_type.tsv
428 B
demux_NNNNTCGAGTTANNNNN_trimmed_single_summary_gene.tsv
777.87 kB
iCount RNA-maps
results.tar.gz
553.16 kB
iCount summary
demux_NNNNCACAGTGCNNNNN_trimmed_single_summary_type.tsv
429 B
demux_NNNNCACAGTGCNNNNN_trimmed_single_summary_subtype.tsv
987 B
demux_NNNNCACAGTGCNNNNN_trimmed_single_summary_gene.tsv
696.96 kB
iCount RNA-maps
results.tar.gz
474.59 kB
Paraclu
peaks.bed.gz
895 B
iCount summary
demux_NNNNCACAGAGGNNNNN_trimmed_single_summary_type.tsv
424 B
demux_NNNNCACAGAGGNNNNN_trimmed_single_summary_subtype.tsv
986 B
demux_NNNNCACAGAGGNNNNN_trimmed_single_summary_gene.tsv
531.36 kB
iCount summary
demux_NNNNCACAGATTNNNNN_trimmed_single_summary_type.tsv
429 B
demux_NNNNCACAGATTNNNNN_trimmed_single_summary_subtype.tsv
990 B
demux_NNNNCACAGATTNNNNN_trimmed_single_summary_gene.tsv
559.71 kB
iCount summary
demux_NNNNATACGATTNNNNN_trimmed_single_summary_subtype.tsv
995 B
demux_NNNNATACGATTNNNNN_trimmed_single_summary_type.tsv
435 B
demux_NNNNATACGATTNNNNN_trimmed_single_summary_gene.tsv
1.06 MB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNATACGAGGNNNNN_trimmed.fastq.gz
90.45 MB
report.txt
690 B
demux_NNNNATACGAGGNNNNN_trimmed_fastqc.zip
471.27 kB
Cutadapt (single-end)
demux_NNNNCACAGCTGNNNNN_trimmed.fastq.gz
61.87 MB
report.txt
689 B
fastqc
Directory
demux_NNNNCACAGCTGNNNNN_trimmed_fastqc.zip
490.05 kB
Cutadapt (single-end)
demux_NNNNTCGAGAGGNNNNN_trimmed.fastq.gz
81.71 MB
report.txt
689 B
fastqc
Directory
demux_NNNNTCGAGAGGNNNNN_trimmed_fastqc.zip
473.00 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
690 B
demux_NNNNTCGAGCTGNNNNN_trimmed_fastqc.zip
493.07 kB
demux_NNNNTCGAGCTGNNNNN_trimmed.fastq.gz
59.34 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
691 B
demux_NNNNTCGAGATTNNNNN_trimmed.fastq.gz
112.41 MB
demux_NNNNTCGAGATTNNNNN_trimmed_fastqc.zip
476.94 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
691 B
demux_NNNNCACAGTTANNNNN_trimmed.fastq.gz
66.31 MB
demux_NNNNCACAGTTANNNNN_trimmed_fastqc.zip
472.67 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNATACGTGCNNNNN_trimmed.fastq.gz
92.98 MB
report.txt
690 B
demux_NNNNATACGTGCNNNNN_trimmed_fastqc.zip
480.34 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
690 B
demux_NNNNTCGAGTGCNNNNN_trimmed.fastq.gz
72.24 MB
demux_NNNNTCGAGTGCNNNNN_trimmed_fastqc.zip
484.32 kB
Cutadapt (single-end)
report.txt
690 B
fastqc
Directory
demux_NNNNATACGCTGNNNNN_trimmed.fastq.gz
92.16 MB
demux_NNNNATACGCTGNNNNN_trimmed_fastqc.zip
485.38 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNCACAGTGCNNNNN_trimmed.fastq.gz
70.81 MB
report.txt
690 B
demux_NNNNCACAGTGCNNNNN_trimmed_fastqc.zip
487.40 kB
Cutadapt (single-end)
demux_NNNNATACGATTNNNNN_trimmed.fastq.gz
116.28 MB
fastqc
Directory
report.txt
691 B
demux_NNNNATACGATTNNNNN_trimmed_fastqc.zip
470.04 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
691 B
demux_NNNNCACAGATTNNNNN_trimmed_fastqc.zip
491.85 kB
demux_NNNNCACAGATTNNNNN_trimmed.fastq.gz
65.99 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
690 B
demux_NNNNCACAGAGGNNNNN_trimmed.fastq.gz
43.00 MB
demux_NNNNCACAGAGGNNNNN_trimmed_fastqc.zip
482.82 kB
STAR
demux_NNNNATACGTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
20.26 MB
demux_NNNNATACGTTANNNNN_trimmed.bam.bai
4.00 MB
demux_NNNNATACGTTANNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNATACGTTANNNNN_trimmed.bam
755.56 MB
demux_NNNNATACGTTANNNNN_trimmed_SJ.out.tab
182.07 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCACAGTTANNNNN_fastqc.zip
438.67 kB
demux_NNNNCACAGTTANNNNN.fastq.gz
69.01 MB
stderr.txt
1.05 kB
STAR
demux_NNNNTCGAGAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
14.49 MB
demux_NNNNTCGAGAGGNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNTCGAGAGGNNNNN_trimmed.bam
593.69 MB
demux_NNNNTCGAGAGGNNNNN_trimmed.bam.bai
3.98 MB
demux_NNNNTCGAGAGGNNNNN_trimmed_SJ.out.tab
150.36 kB
STAR
demux_NNNNTCGAGCTGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGCTGNNNNN_trimmed.bam
447.40 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
11.44 MB
demux_NNNNTCGAGCTGNNNNN_trimmed.bam.bai
3.40 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_SJ.out.tab
101.59 kB
STAR
demux_NNNNCACAGTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
12.86 MB
demux_NNNNCACAGTTANNNNN_trimmed.bam.bai
3.02 MB
demux_NNNNCACAGTTANNNNN_trimmed.bam
413.76 MB
demux_NNNNCACAGTTANNNNN_trimmed_SJ.out.tab
62.95 kB
demux_NNNNCACAGTTANNNNN_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNTCGAGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
24.94 MB
demux_NNNNTCGAGATTNNNNN_trimmed.bam
810.41 MB
demux_NNNNTCGAGATTNNNNN_trimmed.bam.bai
4.04 MB
demux_NNNNTCGAGATTNNNNN_trimmed_SJ.out.tab
180.03 kB
demux_NNNNTCGAGATTNNNNN_trimmed_stats.txt
1.81 kB
STAR
demux_NNNNTCGAGTGCNNNNN_trimmed.bam
555.96 MB
demux_NNNNTCGAGTGCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
12.58 MB
demux_NNNNTCGAGTGCNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGTGCNNNNN_trimmed.bam.bai
3.66 MB
demux_NNNNTCGAGTGCNNNNN_trimmed_SJ.out.tab
132.63 kB
STAR
demux_NNNNATACGTGCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
16.14 MB
demux_NNNNATACGTGCNNNNN_trimmed.bam
740.22 MB
demux_NNNNATACGTGCNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNATACGTGCNNNNN_trimmed.bam.bai
3.90 MB
demux_NNNNATACGTGCNNNNN_trimmed_SJ.out.tab
156.72 kB
STAR
demux_NNNNATACGCTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
16.43 MB
demux_NNNNATACGCTGNNNNN_trimmed.bam.bai
3.83 MB
demux_NNNNATACGCTGNNNNN_trimmed.bam
732.33 MB
demux_NNNNATACGCTGNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNATACGCTGNNNNN_trimmed_SJ.out.tab
152.20 kB
STAR
demux_NNNNGTTTCCGTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
15.94 kB
demux_NNNNGTTTCCGTNNNNN_trimmed.bam
272.77 kB
demux_NNNNGTTTCCGTNNNNN_trimmed_stats.txt
1.77 kB
demux_NNNNGTTTCCGTNNNNN_trimmed.bam.bai
1.26 MB
demux_NNNNGTTTCCGTNNNNN_trimmed.bw
16.92 kB
demux_NNNNGTTTCCGTNNNNN_trimmed_SJ.out.tab
360 B
STAR
demux_NNNNTCGAGTTANNNNN_trimmed.bam
355.07 MB
demux_NNNNTCGAGTTANNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGTTANNNNN_trimmed.bam.bai
3.25 MB
demux_NNNNTCGAGTTANNNNN_trimmed_SJ.out.tab
94.97 kB
demux_NNNNTCGAGTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
9.55 MB
STAR
demux_NNNNATACGATTNNNNN_trimmed.bam.bai
4.03 MB
demux_NNNNATACGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
23.02 MB
demux_NNNNATACGATTNNNNN_trimmed.bam
872.23 MB
demux_NNNNATACGATTNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNATACGATTNNNNN_trimmed_SJ.out.tab
198.09 kB
STAR
demux_NNNNCACAGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
16.03 MB
demux_NNNNCACAGATTNNNNN_trimmed.bam.bai
2.76 MB
demux_NNNNCACAGATTNNNNN_trimmed_SJ.out.tab
53.51 kB
demux_NNNNCACAGATTNNNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCACAGATTNNNNN_trimmed.bam
393.38 MB
STAR
demux_NNNNCACAGAGGNNNNN_trimmed.bam
287.14 MB
demux_NNNNCACAGAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
7.01 MB
demux_NNNNCACAGAGGNNNNN_trimmed_SJ.out.tab
44.69 kB
demux_NNNNCACAGAGGNNNNN_trimmed.bam.bai
2.59 MB
demux_NNNNCACAGAGGNNNNN_trimmed_stats.txt
1.80 kB
iCount RNA-maps
results.tar.gz
499.45 kB
iCount summary
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
464.35 kB
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
633 B
iCount peaks
demux_NNNNCACAGCTGNNNNN_unique_scores.tsv.gz
206.77 kB
demux_NNNNCACAGCTGNNNNN_unique_peaks.bed.gz
29.38 kB
demux_NNNNCACAGCTGNNNNN_unique_peaks.bedgraph
48.88 kB
iCount peaks
demux_NNNNCACAGATTNNNNN_unique_peaks.bed.gz
28.70 kB
demux_NNNNCACAGATTNNNNN_unique_peaks.bedgraph
48.18 kB
demux_NNNNCACAGATTNNNNN_unique_scores.tsv.gz
189.70 kB
iCount peaks
demux_NNNNATACGTGCNNNNN_unique_peaks.bed.gz
59.73 kB
demux_NNNNATACGTGCNNNNN_unique_peaks.bedgraph
119.35 kB
demux_NNNNATACGTGCNNNNN_unique_scores.tsv.gz
486.56 kB
iCount peaks
demux_NNNNTCGAGTGCNNNNN_unique_peaks.bed.gz
47.16 kB
demux_NNNNTCGAGTGCNNNNN_unique_peaks.bedgraph
88.64 kB
demux_NNNNTCGAGTGCNNNNN_unique_scores.tsv.gz
413.57 kB
iCount peaks
demux_NNNNATACGCTGNNNNN_unique_peaks.bedgraph
116.17 kB
demux_NNNNATACGCTGNNNNN_unique_scores.tsv.gz
478.76 kB
demux_NNNNATACGCTGNNNNN_unique_peaks.bed.gz
58.89 kB
iCount peaks
demux_NNNNGTTTCCGTNNNNN_unique_peaks.bedgraph
97 B
demux_NNNNGTTTCCGTNNNNN_unique_scores.tsv.gz
497 B
demux_NNNNGTTTCCGTNNNNN_unique_peaks.bed.gz
109 B
iCount peaks
demux_NNNNCACAGTGCNNNNN_unique_scores.tsv.gz
248.29 kB
demux_NNNNCACAGTGCNNNNN_unique_peaks.bedgraph
60.12 kB
demux_NNNNCACAGTGCNNNNN_unique_peaks.bed.gz
35.21 kB
iCount peaks
demux_NNNNATACGATTNNNNN_unique_peaks.bed.gz
68.19 kB
demux_NNNNATACGATTNNNNN_unique_scores.tsv.gz
552.95 kB
demux_NNNNATACGATTNNNNN_unique_peaks.bedgraph
139.53 kB
iCount peaks
demux_NNNNTCGAGTTANNNNN_unique_peaks.bed.gz
33.64 kB
demux_NNNNTCGAGTTANNNNN_unique_scores.tsv.gz
304.24 kB
demux_NNNNTCGAGTTANNNNN_unique_peaks.bedgraph
60.77 kB
iCount xlsites
demux_NNNNCACAGCTGNNNNN_unique.bed.gz
150.63 kB
demux_NNNNCACAGCTGNNNNN_skipped.bam
609.56 kB
demux_NNNNCACAGCTGNNNNN_unique.bedgraph
551.43 kB
demux_NNNNCACAGCTGNNNNN_multi.bed.gz
960.48 kB
STAR
demux_NNNNCACAGATTNNNNN.bam
403.15 MB
demux_NNNNCACAGATTNNNNN.bam.bai
2.62 MB
demux_NNNNCACAGATTNNNNN_unmapped.out.mate1.fastq.gz
40.56 MB
demux_NNNNCACAGATTNNNNN_stats.txt
1.81 kB
demux_NNNNCACAGATTNNNNN_SJ.out.tab
47.39 kB
STAR
demux_NNNNTCGAGATTNNNNN.bam.bai
3.87 MB
demux_NNNNTCGAGATTNNNNN_stats.txt
1.81 kB
demux_NNNNTCGAGATTNNNNN_unmapped.out.mate1.fastq.gz
56.84 MB
demux_NNNNTCGAGATTNNNNN.bam
816.13 MB
demux_NNNNTCGAGATTNNNNN_SJ.out.tab
167.59 kB
STAR
demux_NNNNTCGAGCTGNNNNN_unmapped.out.mate1.fastq.gz
12.91 MB
demux_NNNNTCGAGCTGNNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGCTGNNNNN.bam.bai
3.26 MB
demux_NNNNTCGAGCTGNNNNN_SJ.out.tab
94.60 kB
demux_NNNNTCGAGCTGNNNNN.bam
438.38 MB
iCount xlsites
demux_NNNNTCGAGAGGNNNNN_skipped.bam
1.02 MB
demux_NNNNTCGAGAGGNNNNN_unique.bed.gz
438.34 kB
demux_NNNNTCGAGAGGNNNNN_multi.bed.gz
2.16 MB
demux_NNNNTCGAGAGGNNNNN_unique.bedgraph
1.70 MB
iCount xlsites
demux_NNNNATACGTGCNNNNN_multi.bed.gz
2.08 MB
demux_NNNNATACGTGCNNNNN_unique.bedgraph
1.54 MB
demux_NNNNATACGTGCNNNNN_unique.bed.gz
402.65 kB
demux_NNNNATACGTGCNNNNN_skipped.bam
1.27 MB
STAR
demux_NNNNTCGAGTGCNNNNN_unmapped.out.mate1.fastq.gz
14.28 MB
demux_NNNNTCGAGTGCNNNNN.bam
545.62 MB
demux_NNNNTCGAGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGTGCNNNNN_SJ.out.tab
125.28 kB
demux_NNNNTCGAGTGCNNNNN.bam.bai
3.51 MB
iCount xlsites
demux_NNNNCACAGTTANNNNN_unique.bed.gz
192.20 kB
demux_NNNNCACAGTTANNNNN_skipped.bam
650.63 kB
demux_NNNNCACAGTTANNNNN_multi.bed.gz
1.09 MB
demux_NNNNCACAGTTANNNNN_unique.bedgraph
716.92 kB
STAR
demux_NNNNCACAGTTANNNNN.bam.bai
2.88 MB
demux_NNNNCACAGTTANNNNN_unmapped.out.mate1.fastq.gz
18.92 MB
demux_NNNNCACAGTTANNNNN_stats.txt
1.80 kB
demux_NNNNCACAGTTANNNNN.bam
411.18 MB
demux_NNNNCACAGTTANNNNN_SJ.out.tab
58.36 kB
iCount summary
demux_NNNNATACGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNATACGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
686.02 kB
demux_NNNNATACGCTGNNNNN_unique_summary.tsv_summary_type.tsv
268 B
STAR
demux_NNNNATACGATTNNNNN_unmapped.out.mate1.fastq.gz
43.95 MB
demux_NNNNATACGATTNNNNN.bam.bai
3.87 MB
demux_NNNNATACGATTNNNNN_stats.txt
1.81 kB
demux_NNNNATACGATTNNNNN.bam
867.86 MB
demux_NNNNATACGATTNNNNN_SJ.out.tab
183.53 kB
STAR
demux_NNNNTCGAGTTANNNNN_unmapped.out.mate1.fastq.gz
15.65 MB
demux_NNNNTCGAGTTANNNNN.bam
352.90 MB
demux_NNNNTCGAGTTANNNNN.bam.bai
3.11 MB
demux_NNNNTCGAGTTANNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGTTANNNNN_SJ.out.tab
89.40 kB
STAR
demux_NNNNCACAGTGCNNNNN_stats.txt
1.81 kB
demux_NNNNCACAGTGCNNNNN_unmapped.out.mate1.fastq.gz
13.65 MB
demux_NNNNCACAGTGCNNNNN.bam.bai
2.86 MB
demux_NNNNCACAGTGCNNNNN_SJ.out.tab
60.48 kB
demux_NNNNCACAGTGCNNNNN.bam
492.43 MB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATACGCTGNNNNN_fastqc.zip
418.22 kB
demux_NNNNATACGCTGNNNNN.fastq.gz
89.74 MB
Reads (single-end)
demux_NNNNCACAGCTGNNNNN.fastq.gz
60.38 MB
fastqc
Directory
stderr.txt
1.10 kB
demux_NNNNCACAGCTGNNNNN_fastqc.zip
430.32 kB
iCount summary
demux_NNNNATACGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNATACGATTNNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNATACGATTNNNNN_unique_summary.tsv_summary_gene.tsv
723.48 kB
iCount peaks
demux_NNNNTCGAGATTNNNNN_unique_peaks.bed.gz
61.17 kB
demux_NNNNTCGAGATTNNNNN_unique_scores.tsv.gz
489.83 kB
demux_NNNNTCGAGATTNNNNN_unique_peaks.bedgraph
121.25 kB
iCount peaks
demux_NNNNATACGAGGNNNNN_unique_peaks.bed.gz
65.61 kB
demux_NNNNATACGAGGNNNNN_unique_scores.tsv.gz
535.64 kB
demux_NNNNATACGAGGNNNNN_unique_peaks.bedgraph
135.40 kB

m6A_CHP-212_CHP-212 ALKBH5 overexpression. Rep 2_20180417_JU

iCount peaks
demux_NNNNTCGAGAGGNNNNN_unique_peaks.bed.gz
59.81 kB
demux_NNNNTCGAGAGGNNNNN_unique_scores.tsv.gz
518.64 kB
demux_NNNNTCGAGAGGNNNNN_unique_peaks.bedgraph
121.66 kB
iCount summary
demux_NNNNTCGAGAGGNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTCGAGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNTCGAGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
700.24 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGAGAGGNNNNN.fastq.gz
79.65 MB
demux_NNNNTCGAGAGGNNNNN_fastqc.zip
393.14 kB
stderr.txt
1.05 kB
STAR
demux_NNNNTCGAGAGGNNNNN_unmapped.out.mate1.fastq.gz
16.54 MB
demux_NNNNTCGAGAGGNNNNN.bam
581.50 MB
demux_NNNNTCGAGAGGNNNNN_SJ.out.tab
142.29 kB
demux_NNNNTCGAGAGGNNNNN_stats.txt
1.81 kB
demux_NNNNTCGAGAGGNNNNN.bam.bai
3.84 MB
iCount xlsites
demux_NNNNTCGAGAGGNNNNN_skipped.bam
1.02 MB
demux_NNNNTCGAGAGGNNNNN_unique.bed.gz
438.34 kB
demux_NNNNTCGAGAGGNNNNN_multi.bed.gz
2.16 MB
demux_NNNNTCGAGAGGNNNNN_unique.bedgraph
1.70 MB

m6A_CHP-212_CHP-212 MOCK. Rep 2_20180417_JU

iCount xlsites
demux_NNNNTCGAGTTANNNNN_skipped.bam
715.14 kB
demux_NNNNTCGAGTTANNNNN_multi.bed.gz
1.34 MB
demux_NNNNTCGAGTTANNNNN_unique.bed.gz
235.55 kB
demux_NNNNTCGAGTTANNNNN_unique.bedgraph
902.31 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGAGTTANNNNN.fastq.gz
52.58 MB
stderr.txt
1.05 kB
demux_NNNNTCGAGTTANNNNN_fastqc.zip
461.88 kB
iCount summary
demux_NNNNTCGAGTTANNNNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNTCGAGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNTCGAGTTANNNNN_unique_summary.tsv_summary_gene.tsv
519.58 kB
iCount peaks
demux_NNNNTCGAGTTANNNNN_unique_peaks.bed.gz
33.64 kB
demux_NNNNTCGAGTTANNNNN_unique_scores.tsv.gz
304.24 kB
demux_NNNNTCGAGTTANNNNN_unique_peaks.bedgraph
60.77 kB
STAR
demux_NNNNTCGAGTTANNNNN_unmapped.out.mate1.fastq.gz
15.65 MB
demux_NNNNTCGAGTTANNNNN.bam
352.90 MB
demux_NNNNTCGAGTTANNNNN.bam.bai
3.11 MB
demux_NNNNTCGAGTTANNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGTTANNNNN_SJ.out.tab
89.40 kB

m6A_CHP-212_CHP-212 METTL14 overexpression. Rep 1_20180417_JU

iCount xlsites
demux_NNNNATACGATTNNNNN_multi.bed.gz
2.29 MB
demux_NNNNATACGATTNNNNN_unique.bed.gz
471.80 kB
demux_NNNNATACGATTNNNNN_unique.bedgraph
1.84 MB
demux_NNNNATACGATTNNNNN_skipped.bam
1.77 MB
Reads (single-end)
demux_NNNNATACGATTNNNNN.fastq.gz
130.62 MB
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNATACGATTNNNNN_fastqc.zip
429.38 kB
iCount peaks
demux_NNNNATACGATTNNNNN_unique_peaks.bed.gz
68.19 kB
demux_NNNNATACGATTNNNNN_unique_scores.tsv.gz
552.95 kB
demux_NNNNATACGATTNNNNN_unique_peaks.bedgraph
139.53 kB
STAR
demux_NNNNATACGATTNNNNN_unmapped.out.mate1.fastq.gz
43.95 MB
demux_NNNNATACGATTNNNNN.bam.bai
3.87 MB
demux_NNNNATACGATTNNNNN_stats.txt
1.81 kB
demux_NNNNATACGATTNNNNN.bam
867.86 MB
demux_NNNNATACGATTNNNNN_SJ.out.tab
183.53 kB
iCount summary
demux_NNNNATACGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNATACGATTNNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNATACGATTNNNNN_unique_summary.tsv_summary_gene.tsv
723.48 kB

demux_nomatch.fastq.gz

Reads (single-end)
stderr.txt
875 B
fastqc
Directory
demux_nomatch.fastq.gz
5.66 GB
demux_nomatch_fastqc.zip
585.44 kB

m6A_CHP-212_CHP-212 ALKBH5 overexpression. Rep 1_20180417_JU

iCount summary
demux_NNNNATACGAGGNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNATACGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
713.44 kB
demux_NNNNATACGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
639 B
iCount xlsites
demux_NNNNATACGAGGNNNNN_unique.bed.gz
454.99 kB
demux_NNNNATACGAGGNNNNN_skipped.bam
1.21 MB
demux_NNNNATACGAGGNNNNN_multi.bed.gz
2.20 MB
demux_NNNNATACGAGGNNNNN_unique.bedgraph
1.78 MB
STAR
demux_NNNNATACGAGGNNNNN.bam
687.11 MB
demux_NNNNATACGAGGNNNNN_unmapped.out.mate1.fastq.gz
17.33 MB
demux_NNNNATACGAGGNNNNN.bam.bai
3.81 MB
demux_NNNNATACGAGGNNNNN_SJ.out.tab
156.47 kB
demux_NNNNATACGAGGNNNNN_stats.txt
1.81 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATACGAGGNNNNN.fastq.gz
88.18 MB
demux_NNNNATACGAGGNNNNN_fastqc.zip
419.10 kB
iCount peaks
demux_NNNNATACGAGGNNNNN_unique_peaks.bed.gz
65.61 kB
demux_NNNNATACGAGGNNNNN_unique_scores.tsv.gz
535.64 kB
demux_NNNNATACGAGGNNNNN_unique_peaks.bedgraph
135.40 kB

L3modified_merged_GAM599A31-A60_S27_L008_R1_001.fastq.gz

Reads (single-end)
fastqc
Directory
stderr.txt
1.52 kB
L3modified_merged_GAM599A31-A60_S27_L008_R1_001.fastq.gz
9.34 GB
L3modified_merged_GAM599A31-A60_S27_L008_R1_001_fastqc.zip
591.98 kB

m6A_CHP-212_CHP-212 ALKBH5 overexpression. Rep 3_20180417_JU

iCount peaks
demux_NNNNCACAGAGGNNNNN_unique_scores.tsv.gz
177.01 kB
demux_NNNNCACAGAGGNNNNN_unique_peaks.bed.gz
24.59 kB
demux_NNNNCACAGAGGNNNNN_unique_peaks.bedgraph
40.60 kB
iCount xlsites
demux_NNNNCACAGAGGNNNNN_skipped.bam
429.17 kB
demux_NNNNCACAGAGGNNNNN_unique.bedgraph
460.04 kB
demux_NNNNCACAGAGGNNNNN_unique.bed.gz
126.26 kB
demux_NNNNCACAGAGGNNNNN_multi.bed.gz
818.13 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNCACAGAGGNNNNN.fastq.gz
41.90 MB
demux_NNNNCACAGAGGNNNNN_fastqc.zip
412.95 kB
iCount summary
demux_NNNNCACAGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
628 B
demux_NNNNCACAGAGGNNNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNCACAGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
356.15 kB
STAR
demux_NNNNCACAGAGGNNNNN_unmapped.out.mate1.fastq.gz
7.99 MB
demux_NNNNCACAGAGGNNNNN_stats.txt
1.80 kB
demux_NNNNCACAGAGGNNNNN.bam
282.35 MB
demux_NNNNCACAGAGGNNNNN.bam.bai
2.48 MB
demux_NNNNCACAGAGGNNNNN_SJ.out.tab
41.73 kB

m6A_SK-N-AS_SK-N-AS MOCK. Rep 2_20180417_JU

Reads (single-end)
demux_NNNNTCGAGCTGNNNNN.fastq.gz
57.86 MB
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNTCGAGCTGNNNNN_fastqc.zip
426.43 kB
iCount peaks
demux_NNNNTCGAGCTGNNNNN_unique_peaks.bed.gz
39.15 kB
demux_NNNNTCGAGCTGNNNNN_unique_peaks.bedgraph
73.54 kB
demux_NNNNTCGAGCTGNNNNN_unique_scores.tsv.gz
332.96 kB
iCount xlsites
demux_NNNNTCGAGCTGNNNNN_unique.bed.gz
257.41 kB
demux_NNNNTCGAGCTGNNNNN_multi.bed.gz
1.48 MB
demux_NNNNTCGAGCTGNNNNN_unique.bedgraph
984.20 kB
demux_NNNNTCGAGCTGNNNNN_skipped.bam
808.05 kB
iCount summary
demux_NNNNTCGAGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
562.15 kB
demux_NNNNTCGAGCTGNNNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNTCGAGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
635 B
STAR
demux_NNNNTCGAGCTGNNNNN_unmapped.out.mate1.fastq.gz
12.91 MB
demux_NNNNTCGAGCTGNNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGCTGNNNNN.bam.bai
3.26 MB
demux_NNNNTCGAGCTGNNNNN_SJ.out.tab
94.60 kB
demux_NNNNTCGAGCTGNNNNN.bam
438.38 MB

m6A_SK-N-AS_SK-N-AS ALKBH5 overexpression. Rep 1_20180417_JU

iCount summary
demux_NNNNATACGTGCNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNATACGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
684.95 kB
demux_NNNNATACGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
636 B
STAR
demux_NNNNATACGTGCNNNNN_SJ.out.tab
147.86 kB
demux_NNNNATACGTGCNNNNN.bam.bai
3.74 MB
demux_NNNNATACGTGCNNNNN_unmapped.out.mate1.fastq.gz
18.27 MB
demux_NNNNATACGTGCNNNNN_stats.txt
1.81 kB
demux_NNNNATACGTGCNNNNN.bam
725.50 MB
Reads (single-end)
demux_NNNNATACGTGCNNNNN.fastq.gz
90.57 MB
fastqc
Directory
demux_NNNNATACGTGCNNNNN_fastqc.zip
408.85 kB
stderr.txt
1.05 kB
iCount peaks
demux_NNNNATACGTGCNNNNN_unique_peaks.bed.gz
59.73 kB
demux_NNNNATACGTGCNNNNN_unique_peaks.bedgraph
119.35 kB
demux_NNNNATACGTGCNNNNN_unique_scores.tsv.gz
486.56 kB
iCount xlsites
demux_NNNNATACGTGCNNNNN_multi.bed.gz
2.08 MB
demux_NNNNATACGTGCNNNNN_unique.bedgraph
1.54 MB
demux_NNNNATACGTGCNNNNN_unique.bed.gz
402.65 kB
demux_NNNNATACGTGCNNNNN_skipped.bam
1.27 MB

m6A_SK-N-AS_SK-N-AS ALKBH5 overexpression. Rep 2_20180417_JU

iCount xlsites
demux_NNNNTCGAGTGCNNNNN_multi.bed.gz
1.76 MB
demux_NNNNTCGAGTGCNNNNN_skipped.bam
930.56 kB
demux_NNNNTCGAGTGCNNNNN_unique.bedgraph
1.28 MB
demux_NNNNTCGAGTGCNNNNN_unique.bed.gz
335.29 kB
iCount summary
demux_NNNNTCGAGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNTCGAGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
622.88 kB
demux_NNNNTCGAGTGCNNNNN_unique_summary.tsv_summary_type.tsv
266 B
Reads (single-end)
fastqc
Directory
demux_NNNNTCGAGTGCNNNNN_fastqc.zip
418.97 kB
stderr.txt
1.05 kB
demux_NNNNTCGAGTGCNNNNN.fastq.gz
70.45 MB
iCount peaks
demux_NNNNTCGAGTGCNNNNN_unique_peaks.bed.gz
47.16 kB
demux_NNNNTCGAGTGCNNNNN_unique_peaks.bedgraph
88.64 kB
demux_NNNNTCGAGTGCNNNNN_unique_scores.tsv.gz
413.57 kB
STAR
demux_NNNNTCGAGTGCNNNNN_unmapped.out.mate1.fastq.gz
14.28 MB
demux_NNNNTCGAGTGCNNNNN.bam
545.62 MB
demux_NNNNTCGAGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGTGCNNNNN_SJ.out.tab
125.28 kB
demux_NNNNTCGAGTGCNNNNN.bam.bai
3.51 MB

m6A_CHP-212_CHP-212 MOCK. Rep 3_20180417_JU

iCount summary
demux_NNNNCACAGTTANNNNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNCACAGTTANNNNN_unique_summary.tsv_summary_gene.tsv
458.82 kB
demux_NNNNCACAGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
iCount peaks
demux_NNNNCACAGTTANNNNN_unique_scores.tsv.gz
256.40 kB
demux_NNNNCACAGTTANNNNN_unique_peaks.bedgraph
65.10 kB
demux_NNNNCACAGTTANNNNN_unique_peaks.bed.gz
38.04 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCACAGTTANNNNN_fastqc.zip
438.67 kB
demux_NNNNCACAGTTANNNNN.fastq.gz
69.01 MB
stderr.txt
1.05 kB
iCount xlsites
demux_NNNNCACAGTTANNNNN_unique.bed.gz
192.20 kB
demux_NNNNCACAGTTANNNNN_skipped.bam
650.63 kB
demux_NNNNCACAGTTANNNNN_multi.bed.gz
1.09 MB
demux_NNNNCACAGTTANNNNN_unique.bedgraph
716.92 kB
STAR
demux_NNNNCACAGTTANNNNN.bam.bai
2.88 MB
demux_NNNNCACAGTTANNNNN_unmapped.out.mate1.fastq.gz
18.92 MB
demux_NNNNCACAGTTANNNNN_stats.txt
1.80 kB
demux_NNNNCACAGTTANNNNN.bam
411.18 MB
demux_NNNNCACAGTTANNNNN_SJ.out.tab
58.36 kB

m6A_SK-N-AS_SK-N-AS MOCK. Rep 3_20180417_JU

iCount summary
demux_NNNNCACAGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
401.75 kB
demux_NNNNCACAGCTGNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNCACAGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
633 B
STAR
demux_NNNNCACAGCTGNNNNN_unmapped.out.mate1.fastq.gz
11.94 MB
demux_NNNNCACAGCTGNNNNN_stats.txt
1.80 kB
demux_NNNNCACAGCTGNNNNN.bam.bai
2.66 MB
demux_NNNNCACAGCTGNNNNN_SJ.out.tab
50.03 kB
demux_NNNNCACAGCTGNNNNN.bam
432.81 MB
iCount peaks
demux_NNNNCACAGCTGNNNNN_unique_scores.tsv.gz
206.77 kB
demux_NNNNCACAGCTGNNNNN_unique_peaks.bed.gz
29.38 kB
demux_NNNNCACAGCTGNNNNN_unique_peaks.bedgraph
48.88 kB
iCount xlsites
demux_NNNNCACAGCTGNNNNN_unique.bed.gz
150.63 kB
demux_NNNNCACAGCTGNNNNN_skipped.bam
609.56 kB
demux_NNNNCACAGCTGNNNNN_unique.bedgraph
551.43 kB
demux_NNNNCACAGCTGNNNNN_multi.bed.gz
960.48 kB
Reads (single-end)
demux_NNNNCACAGCTGNNNNN.fastq.gz
60.38 MB
fastqc
Directory
stderr.txt
1.10 kB
demux_NNNNCACAGCTGNNNNN_fastqc.zip
430.32 kB

m6A_CHP-212_CHP-212 MOCK. Rep 1_20180417_JU

Reads (single-end)
fastqc
Directory
demux_NNNNATACGTTANNNNN.fastq.gz
113.26 MB
stderr.txt
1.05 kB
demux_NNNNATACGTTANNNNN_fastqc.zip
440.62 kB
iCount xlsites
demux_NNNNATACGTTANNNNN_skipped.bam
1.58 MB
demux_NNNNATACGTTANNNNN_unique.bed.gz
459.28 kB
demux_NNNNATACGTTANNNNN_multi.bed.gz
2.25 MB
demux_NNNNATACGTTANNNNN_unique.bedgraph
1.79 MB
iCount summary
demux_NNNNATACGTTANNNNN_unique_summary.tsv_summary_gene.tsv
708.85 kB
demux_NNNNATACGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNATACGTTANNNNN_unique_summary.tsv_summary_type.tsv
268 B
iCount peaks
demux_NNNNATACGTTANNNNN_unique_peaks.bed.gz
65.93 kB
demux_NNNNATACGTTANNNNN_unique_peaks.bedgraph
136.11 kB
demux_NNNNATACGTTANNNNN_unique_scores.tsv.gz
539.10 kB
STAR
demux_NNNNATACGTTANNNNN_unmapped.out.mate1.fastq.gz
36.63 MB
demux_NNNNATACGTTANNNNN_SJ.out.tab
169.44 kB
demux_NNNNATACGTTANNNNN_stats.txt
1.81 kB
demux_NNNNATACGTTANNNNN.bam
751.59 MB
demux_NNNNATACGTTANNNNN.bam.bai
3.84 MB

m6A_SK-N-AS_SK-N-AS ALKBH5 overexpression. Rep 3_20180417_JU

iCount xlsites
demux_NNNNCACAGTGCNNNNN_skipped.bam
785.00 kB
demux_NNNNCACAGTGCNNNNN_unique.bed.gz
184.03 kB
demux_NNNNCACAGTGCNNNNN_unique.bedgraph
680.04 kB
demux_NNNNCACAGTGCNNNNN_multi.bed.gz
1.08 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCACAGTGCNNNNN.fastq.gz
68.94 MB
stderr.txt
1.10 kB
demux_NNNNCACAGTGCNNNNN_fastqc.zip
414.69 kB
iCount summary
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
464.35 kB
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
633 B
iCount peaks
demux_NNNNCACAGTGCNNNNN_unique_scores.tsv.gz
248.29 kB
demux_NNNNCACAGTGCNNNNN_unique_peaks.bedgraph
60.12 kB
demux_NNNNCACAGTGCNNNNN_unique_peaks.bed.gz
35.21 kB
STAR
demux_NNNNCACAGTGCNNNNN_stats.txt
1.81 kB
demux_NNNNCACAGTGCNNNNN_unmapped.out.mate1.fastq.gz
13.65 MB
demux_NNNNCACAGTGCNNNNN.bam.bai
2.86 MB
demux_NNNNCACAGTGCNNNNN_SJ.out.tab
60.48 kB
demux_NNNNCACAGTGCNNNNN.bam
492.43 MB

IgG_SK-N-AS_IgG_20180417_JU

Reads (single-end)
fastqc
Directory
demux_NNNNGTTTCCGTNNNNN.fastq.gz
44.63 kB
stderr.txt
158 B
demux_NNNNGTTTCCGTNNNNN_fastqc.zip
526.87 kB
STAR
demux_NNNNGTTTCCGTNNNNN.bam
256.44 kB
demux_NNNNGTTTCCGTNNNNN_stats.txt
1.78 kB
demux_NNNNGTTTCCGTNNNNN.bam.bai
1.17 MB
demux_NNNNGTTTCCGTNNNNN_unmapped.out.mate1.fastq.gz
22.23 kB
demux_NNNNGTTTCCGTNNNNN_SJ.out.tab
324 B
iCount summary
demux_NNNNGTTTCCGTNNNNN_unique_summary.tsv_summary_type.tsv
137 B
demux_NNNNGTTTCCGTNNNNN_unique_summary.tsv_summary_subtype.tsv
234 B
demux_NNNNGTTTCCGTNNNNN_unique_summary.tsv_summary_gene.tsv
482 B
iCount xlsites
demux_NNNNGTTTCCGTNNNNN_multi.bed.gz
4.36 kB
demux_NNNNGTTTCCGTNNNNN_skipped.bam
3.22 kB
demux_NNNNGTTTCCGTNNNNN_unique.bed.gz
274 B
demux_NNNNGTTTCCGTNNNNN_unique.bedgraph
602 B
iCount peaks
demux_NNNNGTTTCCGTNNNNN_unique_peaks.bedgraph
97 B
demux_NNNNGTTTCCGTNNNNN_unique_scores.tsv.gz
497 B
demux_NNNNGTTTCCGTNNNNN_unique_peaks.bed.gz
109 B

m6A_SK-N-AS_SK-N-AS MOCK. Rep 1_20180417_JU

STAR
demux_NNNNATACGCTGNNNNN_unmapped.out.mate1.fastq.gz
18.58 MB
demux_NNNNATACGCTGNNNNN.bam.bai
3.68 MB
demux_NNNNATACGCTGNNNNN.bam
717.32 MB
demux_NNNNATACGCTGNNNNN_stats.txt
1.81 kB
demux_NNNNATACGCTGNNNNN_SJ.out.tab
143.76 kB
iCount xlsites
demux_NNNNATACGCTGNNNNN_unique.bed.gz
392.98 kB
demux_NNNNATACGCTGNNNNN_skipped.bam
1.24 MB
demux_NNNNATACGCTGNNNNN_unique.bedgraph
1.51 MB
demux_NNNNATACGCTGNNNNN_multi.bed.gz
2.00 MB
iCount peaks
demux_NNNNATACGCTGNNNNN_unique_peaks.bedgraph
116.17 kB
demux_NNNNATACGCTGNNNNN_unique_scores.tsv.gz
478.76 kB
demux_NNNNATACGCTGNNNNN_unique_peaks.bed.gz
58.89 kB
iCount summary
demux_NNNNATACGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNATACGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
686.02 kB
demux_NNNNATACGCTGNNNNN_unique_summary.tsv_summary_type.tsv
268 B
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATACGCTGNNNNN_fastqc.zip
418.22 kB
demux_NNNNATACGCTGNNNNN.fastq.gz
89.74 MB

m6A_CHP-212_CHP-212 METTL14 overexpression. Rep 3_20180417_JU

iCount summary
demux_NNNNCACAGATTNNNNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNCACAGATTNNNNN_unique_summary.tsv_summary_gene.tsv
369.09 kB
demux_NNNNCACAGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
635 B
Reads (single-end)
fastqc
Directory
demux_NNNNCACAGATTNNNNN.fastq.gz
85.82 MB
stderr.txt
1.05 kB
demux_NNNNCACAGATTNNNNN_fastqc.zip
400.09 kB
iCount xlsites
demux_NNNNCACAGATTNNNNN_skipped.bam
881.04 kB
demux_NNNNCACAGATTNNNNN_unique.bed.gz
137.41 kB
demux_NNNNCACAGATTNNNNN_multi.bed.gz
903.71 kB
demux_NNNNCACAGATTNNNNN_unique.bedgraph
499.32 kB
iCount peaks
demux_NNNNCACAGATTNNNNN_unique_peaks.bed.gz
28.70 kB
demux_NNNNCACAGATTNNNNN_unique_peaks.bedgraph
48.18 kB
demux_NNNNCACAGATTNNNNN_unique_scores.tsv.gz
189.70 kB
STAR
demux_NNNNCACAGATTNNNNN.bam
403.15 MB
demux_NNNNCACAGATTNNNNN.bam.bai
2.62 MB
demux_NNNNCACAGATTNNNNN_unmapped.out.mate1.fastq.gz
40.56 MB
demux_NNNNCACAGATTNNNNN_stats.txt
1.81 kB
demux_NNNNCACAGATTNNNNN_SJ.out.tab
47.39 kB

m6A_CHP-212_CHP-212 METTL14 overexpression. Rep 2_20180417_JU

iCount summary
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_gene.tsv
690.02 kB
iCount xlsites
demux_NNNNTCGAGATTNNNNN_multi.bed.gz
2.14 MB
demux_NNNNTCGAGATTNNNNN_skipped.bam
1.72 MB
demux_NNNNTCGAGATTNNNNN_unique.bedgraph
1.57 MB
demux_NNNNTCGAGATTNNNNN_unique.bed.gz
410.48 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGAGATTNNNNN.fastq.gz
137.29 MB
stderr.txt
1.05 kB
demux_NNNNTCGAGATTNNNNN_fastqc.zip
428.38 kB
STAR
demux_NNNNTCGAGATTNNNNN.bam.bai
3.87 MB
demux_NNNNTCGAGATTNNNNN_stats.txt
1.81 kB
demux_NNNNTCGAGATTNNNNN_unmapped.out.mate1.fastq.gz
56.84 MB
demux_NNNNTCGAGATTNNNNN.bam
816.13 MB
demux_NNNNTCGAGATTNNNNN_SJ.out.tab
167.59 kB
iCount peaks
demux_NNNNTCGAGATTNNNNN_unique_peaks.bed.gz
61.17 kB
demux_NNNNTCGAGATTNNNNN_unique_scores.tsv.gz
489.83 kB
demux_NNNNTCGAGATTNNNNN_unique_peaks.bedgraph
121.25 kB