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Folder iconHEK293 miCLIP RNA modification comparison

Patrick Toolan-Kerr
May 3, 2018
miCLIP to test the protocol across different RNA modifications in HEK 293 cells

No Sample

FASTQ file (single-end)
fastqc
Directory
igg-20180109-ju.fastq.gz
15.92 MB
stderr.txt
915 B
igg-20180109-ju_fastqc.zip
470.36 kB
iCount summary
m6a-20180109-jufastqgz_unmapped_single_summary_subtype.tsv
639 B
m6a-20180109-jufastqgz_unmapped_single_summary_type.tsv
266 B
m6a-20180109-jufastqgz_unmapped_single_summary_gene.tsv
729.84 kB
iCount xlsites
pseudou-20180109-ju_trimmed_skipped.bam
3.97 kB
pseudou-20180109-ju_trimmed_single.bed.gz
43.42 kB
pseudou-20180109-ju_trimmed_single.bedgraph
181 B
pseudou-20180109-ju_trimmed_singleAndMulti.bed.gz
63.21 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGAATANNN.fastq.gz
138.71 MB
stderr.txt
975 B
demux_NNNNGAATANNN_fastqc.zip
438.33 kB
iCount xlsites
demux_NNNNTTTAANNN_skipped.bam
180.91 kB
demux_NNNNTTTAANNN_unique.bed.gz
123.42 kB
demux_NNNNTTTAANNN_multi.bed.gz
521.57 kB
demux_NNNNTTTAANNN_unique.bedgraph
453.52 kB
FASTQ file (single-end)
fastqc
Directory
pseudou-20180109-ju.fastq.gz
138.71 MB
stderr.txt
995 B
pseudou-20180109-ju_fastqc.zip
465.72 kB
FASTQ file (single-end)
fastqc
Directory
m6a-20180109-ju.fastq.gz
249.58 MB
m6a-20180109-ju_fastqc.zip
448.07 kB
stderr.txt
915 B
FASTQ file (single-end)
fastqc
Directory
m1a-20180109-ju.fastq.gz
83.08 MB
stderr.txt
915 B
m1a-20180109-ju_fastqc.zip
548.34 kB
Cutadapt (single-end)
m1a-20180109-ju_trimmed.fastq.gz
80.57 MB
report.txt
682 B
fastqc
Directory
m1a-20180109-ju_trimmed_fastqc.zip
544.68 kB
STAR
m1a-20180109-ju_trimmed.bam
148.73 MB
m1a-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz
28.94 MB
m1a-20180109-ju_trimmed_SJ.out.tab
0 B
m1a-20180109-ju_trimmed.bw
106.15 kB
m1a-20180109-ju_trimmed_stats.txt
1.79 kB
m1a-20180109-ju_trimmed.bam.bai
20.28 kB
iCount xlsites
m1a-20180109-ju_trimmed_single.bedgraph
177 B
m1a-20180109-ju_trimmed_single.bed.gz
28.18 kB
m1a-20180109-ju_trimmed_skipped.bam
3.97 kB
m1a-20180109-ju_trimmed_singleAndMulti.bed.gz
44.01 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.26 kB
m1a-20180109-jufastqgz_unmapped_fastqc.zip
614.15 kB
m1a-20180109-jufastqgz_unmapped.fastq.gz
28.94 MB
iCount xlsites
m1a-20180109-jufastqgz_unmapped_single.bed.gz
43.30 kB
m1a-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz
133.31 kB
m1a-20180109-jufastqgz_unmapped_skipped.bam
2.93 kB
m1a-20180109-jufastqgz_unmapped_single.bedgraph
146.10 kB
iCount summary
m1a-20180109-jufastqgz_unmapped_single_summary_type.tsv
258 B
m1a-20180109-jufastqgz_unmapped_single_summary_subtype.tsv
620 B
m1a-20180109-jufastqgz_unmapped_single_summary_gene.tsv
149.00 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
igg-20180109-ju_trimmed_fastqc.zip
482.32 kB
igg-20180109-ju_trimmed.fastq.gz
15.39 MB
STAR
igg-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz
7.59 MB
igg-20180109-ju_trimmed.bam
20.31 MB
igg-20180109-ju_trimmed.bam.bai
19.72 kB
igg-20180109-ju_trimmed_SJ.out.tab
0 B
igg-20180109-ju_trimmed_stats.txt
1.78 kB
igg-20180109-ju_trimmed.bw
105.42 kB
iCount xlsites
igg-20180109-ju_trimmed_skipped.bam
3.97 kB
igg-20180109-ju_trimmed_single.bed.gz
31.01 kB
igg-20180109-ju_trimmed_singleAndMulti.bed.gz
38.34 kB
igg-20180109-ju_trimmed_single.bedgraph
177 B
iCount reads proxy
igg-20180109-jufastqgz_unmapped.fastq.gz
7.59 MB
fastqc
Directory
stderr.txt
1.33 kB
igg-20180109-jufastqgz_unmapped_fastqc.zip
520.47 kB
STAR
igg-20180109-jufastqgz_unmapped.bw
19.57 kB
igg-20180109-jufastqgz_unmapped.bam
11.00 MB
igg-20180109-jufastqgz_unmapped.bam.bai
1.95 MB
igg-20180109-jufastqgz_unmapped_stats.txt
1.80 kB
igg-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
3.14 MB
igg-20180109-jufastqgz_unmapped_SJ.out.tab
14.45 kB
iCount xlsites
igg-20180109-jufastqgz_unmapped_single.bed.gz
105.59 kB
igg-20180109-jufastqgz_unmapped_skipped.bam
2.93 kB
igg-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz
234.74 kB
igg-20180109-jufastqgz_unmapped_single.bedgraph
383.78 kB
iCount summary
igg-20180109-jufastqgz_unmapped_single_summary_subtype.tsv
631 B
igg-20180109-jufastqgz_unmapped_single_summary_type.tsv
261 B
igg-20180109-jufastqgz_unmapped_single_summary_gene.tsv
326.89 kB
Cutadapt (single-end)
report.txt
682 B
fastqc
Directory
m6a-20180109-ju_trimmed.fastq.gz
243.87 MB
m6a-20180109-ju_trimmed_fastqc.zip
462.80 kB
STAR
m6a-20180109-ju_trimmed.bam.bai
20.56 kB
m6a-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz
93.15 MB
m6a-20180109-ju_trimmed.bam
325.65 MB
m6a-20180109-ju_trimmed_stats.txt
1.78 kB
m6a-20180109-ju_trimmed.bw
106.47 kB
m6a-20180109-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m6a-20180109-ju_trimmed_skipped.bam
3.97 kB
m6a-20180109-ju_trimmed_single.bed.gz
53.24 kB
m6a-20180109-ju_trimmed_singleAndMulti.bed.gz
76.70 kB
m6a-20180109-ju_trimmed_single.bedgraph
177 B
iCount reads proxy
m6a-20180109-jufastqgz_unmapped.fastq.gz
93.15 MB
fastqc
Directory
stderr.txt
1.26 kB
m6a-20180109-jufastqgz_unmapped_fastqc.zip
480.04 kB
STAR
m6a-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
44.66 MB
m6a-20180109-jufastqgz_unmapped.bw
24.50 kB
m6a-20180109-jufastqgz_unmapped_SJ.out.tab
160.60 kB
m6a-20180109-jufastqgz_unmapped.bam
138.50 MB
m6a-20180109-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-20180109-jufastqgz_unmapped.bam.bai
2.60 MB
iCount xlsites
m6a-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz
938.59 kB
m6a-20180109-jufastqgz_unmapped_single.bed.gz
442.50 kB
m6a-20180109-jufastqgz_unmapped_skipped.bam
5.72 kB
m6a-20180109-jufastqgz_unmapped_single.bedgraph
1.72 MB
Cutadapt (single-end)
pseudou-20180109-ju_trimmed_fastqc.zip
476.82 kB
pseudou-20180109-ju_trimmed.fastq.gz
136.16 MB
fastqc
Directory
report.txt
686 B
STAR
pseudou-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz
40.91 MB
pseudou-20180109-ju_trimmed.bam
185.31 MB
pseudou-20180109-ju_trimmed_stats.txt
1.78 kB
pseudou-20180109-ju_trimmed_SJ.out.tab
0 B
pseudou-20180109-ju_trimmed.bam.bai
20.56 kB
pseudou-20180109-ju_trimmed.bw
106.58 kB
iCount reads proxy
fastqc
Directory
pseudou-20180109-jufastqgz_unmapped.fastq.gz
40.91 MB
stderr.txt
1.34 kB
pseudou-20180109-jufastqgz_unmapped_fastqc.zip
490.11 kB
STAR
pseudou-20180109-jufastqgz_unmapped.bam
66.26 MB
pseudou-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
24.33 MB
pseudou-20180109-jufastqgz_unmapped.bam.bai
2.24 MB
pseudou-20180109-jufastqgz_unmapped_stats.txt
1.80 kB
pseudou-20180109-jufastqgz_unmapped.bw
21.29 kB
pseudou-20180109-jufastqgz_unmapped_SJ.out.tab
44.85 kB
iCount xlsites
pseudou-20180109-jufastqgz_unmapped_single.bed.gz
140.47 kB
pseudou-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz
442.38 kB
pseudou-20180109-jufastqgz_unmapped_single.bedgraph
509.23 kB
pseudou-20180109-jufastqgz_unmapped_skipped.bam
2.93 kB
iCount summary
pseudou-20180109-jufastqgz_unmapped_single_summary_type.tsv
263 B
pseudou-20180109-jufastqgz_unmapped_single_summary_subtype.tsv
631 B
pseudou-20180109-jufastqgz_unmapped_single_summary_gene.tsv
388.87 kB
iCount xlsites
demux_NNNNAGGCANNN_skipped.bam
891.97 kB
demux_NNNNAGGCANNN_multi.bed.gz
447.51 kB
demux_NNNNAGGCANNN_unique.bed.gz
97.87 kB
demux_NNNNAGGCANNN_unique.bedgraph
346.68 kB
STAR
m1a-20180109-jufastqgz_unmapped.bam
49.62 MB
m1a-20180109-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
20.66 MB
m1a-20180109-jufastqgz_unmapped.bam.bai
1.71 MB
m1a-20180109-jufastqgz_unmapped_SJ.out.tab
12.47 kB
m1a-20180109-jufastqgz_unmapped.bw
18.49 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
272 B
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCCACNNN_fastqc.zip
441.35 kB
demux_NNNNTCCACNNN.fastq.gz
250.00 MB
Upload iCount sample annotation
miclip_annotation_un1709_PTK.xlsx
16.79 kB
miclip_annotation_un1709_PTK.tab.gz
676 B
iCount summary
demux_NNNNTTTAANNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNTTTAANNN_unique_summary.tsv_summary_gene.tsv
360.10 kB
demux_NNNNTTTAANNN_unique_summary.tsv_summary_type.tsv
260 B
iCount summary
demux_NNNNGAATANNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_gene.tsv
406.22 kB
Reads (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
6.79 GB
demux_nomatch_fastqc.zip
463.96 kB
stderr.txt
875 B
Reads (single-end)
fastqc
Directory
SAD533A163-A182_S18_L006_R1_001.fastq.gz
9.22 GB
stderr.txt
1.21 kB
SAD533A163-A182_S18_L006_R1_001_fastqc.zip
465.43 kB
iCount summary
demux_NNNNAGGCANNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_gene.tsv
278.20 kB
demux_NNNNAGGCANNN_unique_summary.tsv_summary_subtype.tsv
630 B
STAR
demux_NNNNAGGCANNN.bam
298.17 MB
demux_NNNNAGGCANNN.bam.bai
2.04 MB
demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz
40.54 MB
demux_NNNNAGGCANNN_stats.txt
1.80 kB
demux_NNNNAGGCANNN_SJ.out.tab
21.12 kB
iCount summary
demux_NNNNTCCACNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_subtype.tsv
640 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_gene.tsv
720.70 kB
iCount xlsites
demux_NNNNTCCACNNN_multi.bed.gz
1.32 MB
demux_NNNNTCCACNNN_skipped.bam
3.93 MB
demux_NNNNTCCACNNN_unique.bedgraph
1.73 MB
demux_NNNNTCCACNNN_unique.bed.gz
443.74 kB
STAR
demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz
97.50 MB
demux_NNNNTCCACNNN.bam
1.21 GB
demux_NNNNTCCACNNN_stats.txt
1.81 kB
demux_NNNNTCCACNNN.bam.bai
3.00 MB
demux_NNNNTCCACNNN_SJ.out.tab
176.24 kB
iCount xlsites
demux_NNNNGAATANNN_skipped.bam
1.99 MB
demux_NNNNGAATANNN_unique.bedgraph
589.82 kB
demux_NNNNGAATANNN_multi.bed.gz
876.49 kB
demux_NNNNGAATANNN_unique.bed.gz
161.19 kB
STAR
demux_NNNNGAATANNN.bam.bai
2.56 MB
demux_NNNNGAATANNN_stats.txt
1.80 kB
demux_NNNNGAATANNN.bam
746.75 MB
demux_NNNNGAATANNN_unmapped.out.mate1.fastq.gz
54.50 MB
demux_NNNNGAATANNN_SJ.out.tab
56.31 kB
STAR
demux_NNNNTTTAANNN_unmapped.out.mate1.fastq.gz
6.25 MB
demux_NNNNTTTAANNN.bam.bai
2.05 MB
demux_NNNNTTTAANNN_stats.txt
1.80 kB
demux_NNNNTTTAANNN_SJ.out.tab
17.93 kB
demux_NNNNTTTAANNN.bam
64.57 MB
Reads (single-end)
demux_NNNNTTTAANNN.fastq.gz
16.64 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNTTTAANNN_fastqc.zip
439.19 kB
Reads (single-end)
demux_NNNNAGGCANNN.fastq.gz
86.11 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNAGGCANNN_fastqc.zip
519.71 kB

demux_nomatch.fastq.gz

Reads (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
6.79 GB
demux_nomatch_fastqc.zip
463.96 kB
stderr.txt
875 B

pseudoU_HEK293__XXX

Reads (single-end)
fastqc
Directory
demux_NNNNGAATANNN.fastq.gz
138.71 MB
stderr.txt
975 B
demux_NNNNGAATANNN_fastqc.zip
438.33 kB
iCount summary
demux_NNNNGAATANNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_gene.tsv
406.22 kB
iCount xlsites
demux_NNNNGAATANNN_skipped.bam
1.99 MB
demux_NNNNGAATANNN_unique.bedgraph
589.82 kB
demux_NNNNGAATANNN_multi.bed.gz
876.49 kB
demux_NNNNGAATANNN_unique.bed.gz
161.19 kB
STAR
demux_NNNNGAATANNN.bam.bai
2.56 MB
demux_NNNNGAATANNN_stats.txt
1.80 kB
demux_NNNNGAATANNN.bam
746.75 MB
demux_NNNNGAATANNN_unmapped.out.mate1.fastq.gz
54.50 MB
demux_NNNNGAATANNN_SJ.out.tab
56.31 kB

IgG__20180109_JU

FASTQ file (single-end)
fastqc
Directory
igg-20180109-ju.fastq.gz
15.92 MB
stderr.txt
915 B
igg-20180109-ju_fastqc.zip
470.36 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
681 B
igg-20180109-ju_trimmed_fastqc.zip
482.32 kB
igg-20180109-ju_trimmed.fastq.gz
15.39 MB
STAR
igg-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz
7.59 MB
igg-20180109-ju_trimmed.bam
20.31 MB
igg-20180109-ju_trimmed.bam.bai
19.72 kB
igg-20180109-ju_trimmed_SJ.out.tab
0 B
igg-20180109-ju_trimmed_stats.txt
1.78 kB
igg-20180109-ju_trimmed.bw
105.42 kB
iCount xlsites
igg-20180109-ju_trimmed_skipped.bam
3.97 kB
igg-20180109-ju_trimmed_single.bed.gz
31.01 kB
igg-20180109-ju_trimmed_singleAndMulti.bed.gz
38.34 kB
igg-20180109-ju_trimmed_single.bedgraph
177 B
iCount reads proxy
igg-20180109-jufastqgz_unmapped.fastq.gz
7.59 MB
fastqc
Directory
stderr.txt
1.33 kB
igg-20180109-jufastqgz_unmapped_fastqc.zip
520.47 kB
STAR
igg-20180109-jufastqgz_unmapped.bw
19.57 kB
igg-20180109-jufastqgz_unmapped.bam
11.00 MB
igg-20180109-jufastqgz_unmapped.bam.bai
1.95 MB
igg-20180109-jufastqgz_unmapped_stats.txt
1.80 kB
igg-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
3.14 MB
igg-20180109-jufastqgz_unmapped_SJ.out.tab
14.45 kB
iCount xlsites
igg-20180109-jufastqgz_unmapped_single.bed.gz
105.59 kB
igg-20180109-jufastqgz_unmapped_skipped.bam
2.93 kB
igg-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz
234.74 kB
igg-20180109-jufastqgz_unmapped_single.bedgraph
383.78 kB
iCount summary
igg-20180109-jufastqgz_unmapped_single_summary_subtype.tsv
631 B
igg-20180109-jufastqgz_unmapped_single_summary_type.tsv
261 B
igg-20180109-jufastqgz_unmapped_single_summary_gene.tsv
326.89 kB

pseudoU__20180109_JU

iCount xlsites
pseudou-20180109-ju_trimmed_skipped.bam
3.97 kB
pseudou-20180109-ju_trimmed_single.bed.gz
43.42 kB
pseudou-20180109-ju_trimmed_single.bedgraph
181 B
pseudou-20180109-ju_trimmed_singleAndMulti.bed.gz
63.21 kB
FASTQ file (single-end)
fastqc
Directory
pseudou-20180109-ju.fastq.gz
138.71 MB
stderr.txt
995 B
pseudou-20180109-ju_fastqc.zip
465.72 kB
Cutadapt (single-end)
pseudou-20180109-ju_trimmed_fastqc.zip
476.82 kB
pseudou-20180109-ju_trimmed.fastq.gz
136.16 MB
fastqc
Directory
report.txt
686 B
STAR
pseudou-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz
40.91 MB
pseudou-20180109-ju_trimmed.bam
185.31 MB
pseudou-20180109-ju_trimmed_stats.txt
1.78 kB
pseudou-20180109-ju_trimmed_SJ.out.tab
0 B
pseudou-20180109-ju_trimmed.bam.bai
20.56 kB
pseudou-20180109-ju_trimmed.bw
106.58 kB
iCount reads proxy
fastqc
Directory
pseudou-20180109-jufastqgz_unmapped.fastq.gz
40.91 MB
stderr.txt
1.34 kB
pseudou-20180109-jufastqgz_unmapped_fastqc.zip
490.11 kB
STAR
pseudou-20180109-jufastqgz_unmapped.bam
66.26 MB
pseudou-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
24.33 MB
pseudou-20180109-jufastqgz_unmapped.bam.bai
2.24 MB
pseudou-20180109-jufastqgz_unmapped_stats.txt
1.80 kB
pseudou-20180109-jufastqgz_unmapped.bw
21.29 kB
pseudou-20180109-jufastqgz_unmapped_SJ.out.tab
44.85 kB
iCount xlsites
pseudou-20180109-jufastqgz_unmapped_single.bed.gz
140.47 kB
pseudou-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz
442.38 kB
pseudou-20180109-jufastqgz_unmapped_single.bedgraph
509.23 kB
pseudou-20180109-jufastqgz_unmapped_skipped.bam
2.93 kB
iCount summary
pseudou-20180109-jufastqgz_unmapped_single_summary_type.tsv
263 B
pseudou-20180109-jufastqgz_unmapped_single_summary_subtype.tsv
631 B
pseudou-20180109-jufastqgz_unmapped_single_summary_gene.tsv
388.87 kB

m1A_HEK293__XXX

STAR
demux_NNNNAGGCANNN.bam.bai
2.04 MB
demux_NNNNAGGCANNN.bam
298.17 MB
demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz
40.54 MB
demux_NNNNAGGCANNN_stats.txt
1.80 kB
demux_NNNNAGGCANNN_SJ.out.tab
21.12 kB
iCount xlsites
demux_NNNNAGGCANNN_skipped.bam
891.97 kB
demux_NNNNAGGCANNN_multi.bed.gz
447.51 kB
demux_NNNNAGGCANNN_unique.bed.gz
97.87 kB
demux_NNNNAGGCANNN_unique.bedgraph
346.68 kB
iCount summary
demux_NNNNAGGCANNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_gene.tsv
278.20 kB
demux_NNNNAGGCANNN_unique_summary.tsv_summary_subtype.tsv
630 B
Reads (single-end)
demux_NNNNAGGCANNN.fastq.gz
86.11 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNAGGCANNN_fastqc.zip
519.71 kB

m6A__20180109_JU

iCount summary
m6a-20180109-jufastqgz_unmapped_single_summary_subtype.tsv
639 B
m6a-20180109-jufastqgz_unmapped_single_summary_type.tsv
266 B
m6a-20180109-jufastqgz_unmapped_single_summary_gene.tsv
729.84 kB
FASTQ file (single-end)
fastqc
Directory
m6a-20180109-ju.fastq.gz
249.58 MB
m6a-20180109-ju_fastqc.zip
448.07 kB
stderr.txt
915 B
Cutadapt (single-end)
report.txt
682 B
fastqc
Directory
m6a-20180109-ju_trimmed.fastq.gz
243.87 MB
m6a-20180109-ju_trimmed_fastqc.zip
462.80 kB
STAR
m6a-20180109-ju_trimmed.bam.bai
20.56 kB
m6a-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz
93.15 MB
m6a-20180109-ju_trimmed.bam
325.65 MB
m6a-20180109-ju_trimmed_stats.txt
1.78 kB
m6a-20180109-ju_trimmed.bw
106.47 kB
m6a-20180109-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m6a-20180109-ju_trimmed_skipped.bam
3.97 kB
m6a-20180109-ju_trimmed_single.bed.gz
53.24 kB
m6a-20180109-ju_trimmed_singleAndMulti.bed.gz
76.70 kB
m6a-20180109-ju_trimmed_single.bedgraph
177 B
iCount reads proxy
m6a-20180109-jufastqgz_unmapped.fastq.gz
93.15 MB
fastqc
Directory
stderr.txt
1.26 kB
m6a-20180109-jufastqgz_unmapped_fastqc.zip
480.04 kB
STAR
m6a-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
44.66 MB
m6a-20180109-jufastqgz_unmapped.bw
24.50 kB
m6a-20180109-jufastqgz_unmapped_SJ.out.tab
160.60 kB
m6a-20180109-jufastqgz_unmapped.bam
138.50 MB
m6a-20180109-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-20180109-jufastqgz_unmapped.bam.bai
2.60 MB
iCount xlsites
m6a-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz
938.59 kB
m6a-20180109-jufastqgz_unmapped_single.bed.gz
442.50 kB
m6a-20180109-jufastqgz_unmapped_skipped.bam
5.72 kB
m6a-20180109-jufastqgz_unmapped_single.bedgraph
1.72 MB

m1A__20180109_JU

FASTQ file (single-end)
fastqc
Directory
m1a-20180109-ju.fastq.gz
83.08 MB
stderr.txt
915 B
m1a-20180109-ju_fastqc.zip
548.34 kB
Cutadapt (single-end)
m1a-20180109-ju_trimmed.fastq.gz
80.57 MB
report.txt
682 B
fastqc
Directory
m1a-20180109-ju_trimmed_fastqc.zip
544.68 kB
STAR
m1a-20180109-ju_trimmed.bam
148.73 MB
m1a-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz
28.94 MB
m1a-20180109-ju_trimmed_SJ.out.tab
0 B
m1a-20180109-ju_trimmed.bw
106.15 kB
m1a-20180109-ju_trimmed_stats.txt
1.79 kB
m1a-20180109-ju_trimmed.bam.bai
20.28 kB
iCount xlsites
m1a-20180109-ju_trimmed_single.bedgraph
177 B
m1a-20180109-ju_trimmed_single.bed.gz
28.18 kB
m1a-20180109-ju_trimmed_skipped.bam
3.97 kB
m1a-20180109-ju_trimmed_singleAndMulti.bed.gz
44.01 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.26 kB
m1a-20180109-jufastqgz_unmapped_fastqc.zip
614.15 kB
m1a-20180109-jufastqgz_unmapped.fastq.gz
28.94 MB
iCount xlsites
m1a-20180109-jufastqgz_unmapped_single.bed.gz
43.30 kB
m1a-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz
133.31 kB
m1a-20180109-jufastqgz_unmapped_skipped.bam
2.93 kB
m1a-20180109-jufastqgz_unmapped_single.bedgraph
146.10 kB
iCount summary
m1a-20180109-jufastqgz_unmapped_single_summary_type.tsv
258 B
m1a-20180109-jufastqgz_unmapped_single_summary_subtype.tsv
620 B
m1a-20180109-jufastqgz_unmapped_single_summary_gene.tsv
149.00 kB
STAR
m1a-20180109-jufastqgz_unmapped.bam
49.62 MB
m1a-20180109-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
20.66 MB
m1a-20180109-jufastqgz_unmapped.bam.bai
1.71 MB
m1a-20180109-jufastqgz_unmapped_SJ.out.tab
12.47 kB
m1a-20180109-jufastqgz_unmapped.bw
18.49 kB

SAD533A163-A182_S18_L006_R1_001.fastq.gz

Reads (single-end)
fastqc
Directory
SAD533A163-A182_S18_L006_R1_001.fastq.gz
9.22 GB
stderr.txt
1.21 kB
SAD533A163-A182_S18_L006_R1_001_fastqc.zip
465.43 kB

IgG_HEK293__XXX

iCount xlsites
demux_NNNNTTTAANNN_skipped.bam
180.91 kB
demux_NNNNTTTAANNN_unique.bed.gz
123.42 kB
demux_NNNNTTTAANNN_multi.bed.gz
521.57 kB
demux_NNNNTTTAANNN_unique.bedgraph
453.52 kB
iCount summary
demux_NNNNTTTAANNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNTTTAANNN_unique_summary.tsv_summary_gene.tsv
360.10 kB
demux_NNNNTTTAANNN_unique_summary.tsv_summary_type.tsv
260 B
STAR
demux_NNNNTTTAANNN_unmapped.out.mate1.fastq.gz
6.25 MB
demux_NNNNTTTAANNN.bam.bai
2.05 MB
demux_NNNNTTTAANNN_stats.txt
1.80 kB
demux_NNNNTTTAANNN_SJ.out.tab
17.93 kB
demux_NNNNTTTAANNN.bam
64.57 MB
Reads (single-end)
demux_NNNNTTTAANNN.fastq.gz
16.64 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNTTTAANNN_fastqc.zip
439.19 kB

m6A_HEK293__XXX

Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCCACNNN_fastqc.zip
441.35 kB
demux_NNNNTCCACNNN.fastq.gz
250.00 MB
iCount summary
demux_NNNNTCCACNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_subtype.tsv
640 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_gene.tsv
720.70 kB
iCount xlsites
demux_NNNNTCCACNNN_multi.bed.gz
1.32 MB
demux_NNNNTCCACNNN_skipped.bam
3.93 MB
demux_NNNNTCCACNNN_unique.bedgraph
1.73 MB
demux_NNNNTCCACNNN_unique.bed.gz
443.74 kB
STAR
demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz
97.50 MB
demux_NNNNTCCACNNN.bam
1.21 GB
demux_NNNNTCCACNNN_stats.txt
1.81 kB
demux_NNNNTCCACNNN.bam.bai
3.00 MB
demux_NNNNTCCACNNN_SJ.out.tab
176.24 kB