HEK293 miCLIP RNA modification comparison

No Sample

FASTQ file (single-end)

fastqc

Directory

igg-20180109-ju.fastq.gz

15.92 MB

stderr.txt

915 B

igg-20180109-ju_fastqc.zip

470.36 kB

iCount summary

m6a-20180109-jufastqgz_unmapped_single_summary_subtype.tsv

639 B

m6a-20180109-jufastqgz_unmapped_single_summary_type.tsv

266 B

m6a-20180109-jufastqgz_unmapped_single_summary_gene.tsv

729.84 kB

iCount xlsites

pseudou-20180109-ju_trimmed_skipped.bam

3.97 kB

pseudou-20180109-ju_trimmed_single.bed.gz

43.42 kB

pseudou-20180109-ju_trimmed_single.bedgraph

181 B

pseudou-20180109-ju_trimmed_singleAndMulti.bed.gz

63.21 kB

Reads (single-end)

fastqc

Directory

demux_NNNNGAATANNN.fastq.gz

138.71 MB

stderr.txt

975 B

demux_NNNNGAATANNN_fastqc.zip

438.33 kB

iCount xlsites

demux_NNNNTTTAANNN_skipped.bam

180.91 kB

demux_NNNNTTTAANNN_unique.bed.gz

123.42 kB

demux_NNNNTTTAANNN_multi.bed.gz

521.57 kB

demux_NNNNTTTAANNN_unique.bedgraph

453.52 kB

FASTQ file (single-end)

fastqc

Directory

pseudou-20180109-ju.fastq.gz

138.71 MB

stderr.txt

995 B

pseudou-20180109-ju_fastqc.zip

465.72 kB

FASTQ file (single-end)

fastqc

Directory

m6a-20180109-ju.fastq.gz

249.58 MB

m6a-20180109-ju_fastqc.zip

448.07 kB

stderr.txt

915 B

FASTQ file (single-end)

fastqc

Directory

m1a-20180109-ju.fastq.gz

83.08 MB

stderr.txt

915 B

m1a-20180109-ju_fastqc.zip

548.34 kB

Cutadapt (single-end)

m1a-20180109-ju_trimmed.fastq.gz

80.57 MB

report.txt

682 B

fastqc

Directory

m1a-20180109-ju_trimmed_fastqc.zip

544.68 kB

STAR

m1a-20180109-ju_trimmed.bam

148.73 MB

m1a-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz

28.94 MB

m1a-20180109-ju_trimmed_SJ.out.tab

0 B

m1a-20180109-ju_trimmed.bw

106.15 kB

m1a-20180109-ju_trimmed_stats.txt

1.79 kB

m1a-20180109-ju_trimmed.bam.bai

20.28 kB

iCount xlsites

m1a-20180109-ju_trimmed_single.bedgraph

177 B

m1a-20180109-ju_trimmed_single.bed.gz

28.18 kB

m1a-20180109-ju_trimmed_skipped.bam

3.97 kB

m1a-20180109-ju_trimmed_singleAndMulti.bed.gz

44.01 kB

iCount reads proxy

fastqc

Directory

stderr.txt

1.26 kB

m1a-20180109-jufastqgz_unmapped_fastqc.zip

614.15 kB

m1a-20180109-jufastqgz_unmapped.fastq.gz

28.94 MB

iCount xlsites

m1a-20180109-jufastqgz_unmapped_single.bed.gz

43.30 kB

m1a-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz

133.31 kB

m1a-20180109-jufastqgz_unmapped_skipped.bam

2.93 kB

m1a-20180109-jufastqgz_unmapped_single.bedgraph

146.10 kB

iCount summary

m1a-20180109-jufastqgz_unmapped_single_summary_type.tsv

258 B

m1a-20180109-jufastqgz_unmapped_single_summary_subtype.tsv

620 B

m1a-20180109-jufastqgz_unmapped_single_summary_gene.tsv

149.00 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

681 B

igg-20180109-ju_trimmed_fastqc.zip

482.32 kB

igg-20180109-ju_trimmed.fastq.gz

15.39 MB

STAR

igg-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz

7.59 MB

igg-20180109-ju_trimmed.bam

20.31 MB

igg-20180109-ju_trimmed.bam.bai

19.72 kB

igg-20180109-ju_trimmed_SJ.out.tab

0 B

igg-20180109-ju_trimmed_stats.txt

1.78 kB

igg-20180109-ju_trimmed.bw

105.42 kB

iCount xlsites

igg-20180109-ju_trimmed_skipped.bam

3.97 kB

igg-20180109-ju_trimmed_single.bed.gz

31.01 kB

igg-20180109-ju_trimmed_singleAndMulti.bed.gz

38.34 kB

igg-20180109-ju_trimmed_single.bedgraph

177 B

iCount reads proxy

igg-20180109-jufastqgz_unmapped.fastq.gz

7.59 MB

fastqc

Directory

stderr.txt

1.33 kB

igg-20180109-jufastqgz_unmapped_fastqc.zip

520.47 kB

STAR

igg-20180109-jufastqgz_unmapped.bw

19.57 kB

igg-20180109-jufastqgz_unmapped.bam

11.00 MB

igg-20180109-jufastqgz_unmapped.bam.bai

1.95 MB

igg-20180109-jufastqgz_unmapped_stats.txt

1.80 kB

igg-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

3.14 MB

igg-20180109-jufastqgz_unmapped_SJ.out.tab

14.45 kB

iCount xlsites

igg-20180109-jufastqgz_unmapped_single.bed.gz

105.59 kB

igg-20180109-jufastqgz_unmapped_skipped.bam

2.93 kB

igg-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz

234.74 kB

igg-20180109-jufastqgz_unmapped_single.bedgraph

383.78 kB

iCount summary

igg-20180109-jufastqgz_unmapped_single_summary_subtype.tsv

631 B

igg-20180109-jufastqgz_unmapped_single_summary_type.tsv

261 B

igg-20180109-jufastqgz_unmapped_single_summary_gene.tsv

326.89 kB

Cutadapt (single-end)

report.txt

682 B

fastqc

Directory

m6a-20180109-ju_trimmed.fastq.gz

243.87 MB

m6a-20180109-ju_trimmed_fastqc.zip

462.80 kB

STAR

m6a-20180109-ju_trimmed.bam.bai

20.56 kB

m6a-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz

93.15 MB

m6a-20180109-ju_trimmed.bam

325.65 MB

m6a-20180109-ju_trimmed_stats.txt

1.78 kB

m6a-20180109-ju_trimmed.bw

106.47 kB

m6a-20180109-ju_trimmed_SJ.out.tab

0 B

iCount xlsites

m6a-20180109-ju_trimmed_skipped.bam

3.97 kB

m6a-20180109-ju_trimmed_single.bed.gz

53.24 kB

m6a-20180109-ju_trimmed_singleAndMulti.bed.gz

76.70 kB

m6a-20180109-ju_trimmed_single.bedgraph

177 B

iCount reads proxy

m6a-20180109-jufastqgz_unmapped.fastq.gz

93.15 MB

fastqc

Directory

stderr.txt

1.26 kB

m6a-20180109-jufastqgz_unmapped_fastqc.zip

480.04 kB

STAR

m6a-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

44.66 MB

m6a-20180109-jufastqgz_unmapped.bw

24.50 kB

m6a-20180109-jufastqgz_unmapped_SJ.out.tab

160.60 kB

m6a-20180109-jufastqgz_unmapped.bam

138.50 MB

m6a-20180109-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-20180109-jufastqgz_unmapped.bam.bai

2.60 MB

iCount xlsites

m6a-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz

938.59 kB

m6a-20180109-jufastqgz_unmapped_single.bed.gz

442.50 kB

m6a-20180109-jufastqgz_unmapped_skipped.bam

5.72 kB

m6a-20180109-jufastqgz_unmapped_single.bedgraph

1.72 MB

Cutadapt (single-end)

pseudou-20180109-ju_trimmed_fastqc.zip

476.82 kB

pseudou-20180109-ju_trimmed.fastq.gz

136.16 MB

fastqc

Directory

report.txt

686 B

STAR

pseudou-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz

40.91 MB

pseudou-20180109-ju_trimmed.bam

185.31 MB

pseudou-20180109-ju_trimmed_stats.txt

1.78 kB

pseudou-20180109-ju_trimmed_SJ.out.tab

0 B

pseudou-20180109-ju_trimmed.bam.bai

20.56 kB

pseudou-20180109-ju_trimmed.bw

106.58 kB

iCount reads proxy

fastqc

Directory

pseudou-20180109-jufastqgz_unmapped.fastq.gz

40.91 MB

stderr.txt

1.34 kB

pseudou-20180109-jufastqgz_unmapped_fastqc.zip

490.11 kB

STAR

pseudou-20180109-jufastqgz_unmapped.bam

66.26 MB

pseudou-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

24.33 MB

pseudou-20180109-jufastqgz_unmapped.bam.bai

2.24 MB

pseudou-20180109-jufastqgz_unmapped_stats.txt

1.80 kB

pseudou-20180109-jufastqgz_unmapped.bw

21.29 kB

pseudou-20180109-jufastqgz_unmapped_SJ.out.tab

44.85 kB

iCount xlsites

pseudou-20180109-jufastqgz_unmapped_single.bed.gz

140.47 kB

pseudou-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz

442.38 kB

pseudou-20180109-jufastqgz_unmapped_single.bedgraph

509.23 kB

pseudou-20180109-jufastqgz_unmapped_skipped.bam

2.93 kB

iCount summary

pseudou-20180109-jufastqgz_unmapped_single_summary_type.tsv

263 B

pseudou-20180109-jufastqgz_unmapped_single_summary_subtype.tsv

631 B

pseudou-20180109-jufastqgz_unmapped_single_summary_gene.tsv

388.87 kB

iCount xlsites

demux_NNNNAGGCANNN_skipped.bam

891.97 kB

demux_NNNNAGGCANNN_multi.bed.gz

447.51 kB

demux_NNNNAGGCANNN_unique.bed.gz

97.87 kB

demux_NNNNAGGCANNN_unique.bedgraph

346.68 kB

STAR

m1a-20180109-jufastqgz_unmapped.bam

49.62 MB

m1a-20180109-jufastqgz_unmapped_stats.txt

1.80 kB

m1a-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

20.66 MB

m1a-20180109-jufastqgz_unmapped.bam.bai

1.71 MB

m1a-20180109-jufastqgz_unmapped_SJ.out.tab

12.47 kB

m1a-20180109-jufastqgz_unmapped.bw

18.49 kB

iCount demultiplex (from annotation file)

demultiplexing_stats.txt

272 B

Reads (single-end)

fastqc

Directory

stderr.txt

975 B

demux_NNNNTCCACNNN_fastqc.zip

441.35 kB

demux_NNNNTCCACNNN.fastq.gz

250.00 MB

Upload iCount sample annotation

miclip_annotation_un1709_PTK.xlsx

16.79 kB

miclip_annotation_un1709_PTK.tab.gz

676 B

iCount summary

demux_NNNNTTTAANNN_unique_summary.tsv_summary_subtype.tsv

631 B

demux_NNNNTTTAANNN_unique_summary.tsv_summary_gene.tsv

360.10 kB

demux_NNNNTTTAANNN_unique_summary.tsv_summary_type.tsv

260 B

iCount summary

demux_NNNNGAATANNN_unique_summary.tsv_summary_subtype.tsv

631 B

demux_NNNNGAATANNN_unique_summary.tsv_summary_type.tsv

261 B

demux_NNNNGAATANNN_unique_summary.tsv_summary_gene.tsv

406.22 kB

Reads (single-end)

fastqc

Directory

demux_nomatch.fastq.gz

6.79 GB

demux_nomatch_fastqc.zip

463.96 kB

stderr.txt

875 B

Reads (single-end)

fastqc

Directory

SAD533A163-A182_S18_L006_R1_001.fastq.gz

9.22 GB

stderr.txt

1.21 kB

SAD533A163-A182_S18_L006_R1_001_fastqc.zip

465.43 kB

iCount summary

demux_NNNNAGGCANNN_unique_summary.tsv_summary_type.tsv

261 B

demux_NNNNAGGCANNN_unique_summary.tsv_summary_gene.tsv

278.20 kB

demux_NNNNAGGCANNN_unique_summary.tsv_summary_subtype.tsv

630 B

STAR

demux_NNNNAGGCANNN.bam

298.17 MB

demux_NNNNAGGCANNN.bam.bai

2.04 MB

demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz

40.54 MB

demux_NNNNAGGCANNN_stats.txt

1.80 kB

demux_NNNNAGGCANNN_SJ.out.tab

21.12 kB

iCount summary

demux_NNNNTCCACNNN_unique_summary.tsv_summary_type.tsv

267 B

demux_NNNNTCCACNNN_unique_summary.tsv_summary_subtype.tsv

640 B

demux_NNNNTCCACNNN_unique_summary.tsv_summary_gene.tsv

720.70 kB

iCount xlsites

demux_NNNNTCCACNNN_multi.bed.gz

1.32 MB

demux_NNNNTCCACNNN_skipped.bam

3.93 MB

demux_NNNNTCCACNNN_unique.bedgraph

1.73 MB

demux_NNNNTCCACNNN_unique.bed.gz

443.74 kB

STAR

demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz

97.50 MB

demux_NNNNTCCACNNN.bam

1.21 GB

demux_NNNNTCCACNNN_stats.txt

1.81 kB

demux_NNNNTCCACNNN.bam.bai

3.00 MB

demux_NNNNTCCACNNN_SJ.out.tab

176.24 kB

iCount xlsites

demux_NNNNGAATANNN_skipped.bam

1.99 MB

demux_NNNNGAATANNN_unique.bedgraph

589.82 kB

demux_NNNNGAATANNN_multi.bed.gz

876.49 kB

demux_NNNNGAATANNN_unique.bed.gz

161.19 kB

STAR

demux_NNNNGAATANNN.bam.bai

2.56 MB

demux_NNNNGAATANNN_stats.txt

1.80 kB

demux_NNNNGAATANNN.bam

746.75 MB

demux_NNNNGAATANNN_unmapped.out.mate1.fastq.gz

54.50 MB

demux_NNNNGAATANNN_SJ.out.tab

56.31 kB

STAR

demux_NNNNTTTAANNN_unmapped.out.mate1.fastq.gz

6.25 MB

demux_NNNNTTTAANNN.bam.bai

2.05 MB

demux_NNNNTTTAANNN_stats.txt

1.80 kB

demux_NNNNTTTAANNN_SJ.out.tab

17.93 kB

demux_NNNNTTTAANNN.bam

64.57 MB

Reads (single-end)

demux_NNNNTTTAANNN.fastq.gz

16.64 MB

fastqc

Directory

stderr.txt

975 B

demux_NNNNTTTAANNN_fastqc.zip

439.19 kB

Reads (single-end)

demux_NNNNAGGCANNN.fastq.gz

86.11 MB

fastqc

Directory

stderr.txt

975 B

demux_NNNNAGGCANNN_fastqc.zip

519.71 kB

demux_nomatch.fastq.gz

Reads (single-end)

fastqc

Directory

demux_nomatch.fastq.gz

6.79 GB

demux_nomatch_fastqc.zip

463.96 kB

stderr.txt

875 B

pseudoU_HEK293__XXX

Reads (single-end)

fastqc

Directory

demux_NNNNGAATANNN.fastq.gz

138.71 MB

stderr.txt

975 B

demux_NNNNGAATANNN_fastqc.zip

438.33 kB

iCount summary

demux_NNNNGAATANNN_unique_summary.tsv_summary_subtype.tsv

631 B

demux_NNNNGAATANNN_unique_summary.tsv_summary_type.tsv

261 B

demux_NNNNGAATANNN_unique_summary.tsv_summary_gene.tsv

406.22 kB

iCount xlsites

demux_NNNNGAATANNN_skipped.bam

1.99 MB

demux_NNNNGAATANNN_unique.bedgraph

589.82 kB

demux_NNNNGAATANNN_multi.bed.gz

876.49 kB

demux_NNNNGAATANNN_unique.bed.gz

161.19 kB

STAR

demux_NNNNGAATANNN.bam.bai

2.56 MB

demux_NNNNGAATANNN_stats.txt

1.80 kB

demux_NNNNGAATANNN.bam

746.75 MB

demux_NNNNGAATANNN_unmapped.out.mate1.fastq.gz

54.50 MB

demux_NNNNGAATANNN_SJ.out.tab

56.31 kB

IgG__20180109_JU

FASTQ file (single-end)

fastqc

Directory

igg-20180109-ju.fastq.gz

15.92 MB

stderr.txt

915 B

igg-20180109-ju_fastqc.zip

470.36 kB

Cutadapt (single-end)

fastqc

Directory

report.txt

681 B

igg-20180109-ju_trimmed_fastqc.zip

482.32 kB

igg-20180109-ju_trimmed.fastq.gz

15.39 MB

STAR

igg-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz

7.59 MB

igg-20180109-ju_trimmed.bam

20.31 MB

igg-20180109-ju_trimmed.bam.bai

19.72 kB

igg-20180109-ju_trimmed_SJ.out.tab

0 B

igg-20180109-ju_trimmed_stats.txt

1.78 kB

igg-20180109-ju_trimmed.bw

105.42 kB

iCount xlsites

igg-20180109-ju_trimmed_skipped.bam

3.97 kB

igg-20180109-ju_trimmed_single.bed.gz

31.01 kB

igg-20180109-ju_trimmed_singleAndMulti.bed.gz

38.34 kB

igg-20180109-ju_trimmed_single.bedgraph

177 B

iCount reads proxy

igg-20180109-jufastqgz_unmapped.fastq.gz

7.59 MB

fastqc

Directory

stderr.txt

1.33 kB

igg-20180109-jufastqgz_unmapped_fastqc.zip

520.47 kB

STAR

igg-20180109-jufastqgz_unmapped.bw

19.57 kB

igg-20180109-jufastqgz_unmapped.bam

11.00 MB

igg-20180109-jufastqgz_unmapped.bam.bai

1.95 MB

igg-20180109-jufastqgz_unmapped_stats.txt

1.80 kB

igg-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

3.14 MB

igg-20180109-jufastqgz_unmapped_SJ.out.tab

14.45 kB

iCount xlsites

igg-20180109-jufastqgz_unmapped_single.bed.gz

105.59 kB

igg-20180109-jufastqgz_unmapped_skipped.bam

2.93 kB

igg-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz

234.74 kB

igg-20180109-jufastqgz_unmapped_single.bedgraph

383.78 kB

iCount summary

igg-20180109-jufastqgz_unmapped_single_summary_subtype.tsv

631 B

igg-20180109-jufastqgz_unmapped_single_summary_type.tsv

261 B

igg-20180109-jufastqgz_unmapped_single_summary_gene.tsv

326.89 kB

pseudoU__20180109_JU

iCount xlsites

pseudou-20180109-ju_trimmed_skipped.bam

3.97 kB

pseudou-20180109-ju_trimmed_single.bed.gz

43.42 kB

pseudou-20180109-ju_trimmed_single.bedgraph

181 B

pseudou-20180109-ju_trimmed_singleAndMulti.bed.gz

63.21 kB

FASTQ file (single-end)

fastqc

Directory

pseudou-20180109-ju.fastq.gz

138.71 MB

stderr.txt

995 B

pseudou-20180109-ju_fastqc.zip

465.72 kB

Cutadapt (single-end)

pseudou-20180109-ju_trimmed_fastqc.zip

476.82 kB

pseudou-20180109-ju_trimmed.fastq.gz

136.16 MB

fastqc

Directory

report.txt

686 B

STAR

pseudou-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz

40.91 MB

pseudou-20180109-ju_trimmed.bam

185.31 MB

pseudou-20180109-ju_trimmed_stats.txt

1.78 kB

pseudou-20180109-ju_trimmed_SJ.out.tab

0 B

pseudou-20180109-ju_trimmed.bam.bai

20.56 kB

pseudou-20180109-ju_trimmed.bw

106.58 kB

iCount reads proxy

fastqc

Directory

pseudou-20180109-jufastqgz_unmapped.fastq.gz

40.91 MB

stderr.txt

1.34 kB

pseudou-20180109-jufastqgz_unmapped_fastqc.zip

490.11 kB

STAR

pseudou-20180109-jufastqgz_unmapped.bam

66.26 MB

pseudou-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

24.33 MB

pseudou-20180109-jufastqgz_unmapped.bam.bai

2.24 MB

pseudou-20180109-jufastqgz_unmapped_stats.txt

1.80 kB

pseudou-20180109-jufastqgz_unmapped.bw

21.29 kB

pseudou-20180109-jufastqgz_unmapped_SJ.out.tab

44.85 kB

iCount xlsites

pseudou-20180109-jufastqgz_unmapped_single.bed.gz

140.47 kB

pseudou-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz

442.38 kB

pseudou-20180109-jufastqgz_unmapped_single.bedgraph

509.23 kB

pseudou-20180109-jufastqgz_unmapped_skipped.bam

2.93 kB

iCount summary

pseudou-20180109-jufastqgz_unmapped_single_summary_type.tsv

263 B

pseudou-20180109-jufastqgz_unmapped_single_summary_subtype.tsv

631 B

pseudou-20180109-jufastqgz_unmapped_single_summary_gene.tsv

388.87 kB

m1A_HEK293__XXX

STAR

demux_NNNNAGGCANNN.bam.bai

2.04 MB

demux_NNNNAGGCANNN.bam

298.17 MB

demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz

40.54 MB

demux_NNNNAGGCANNN_stats.txt

1.80 kB

demux_NNNNAGGCANNN_SJ.out.tab

21.12 kB

iCount xlsites

demux_NNNNAGGCANNN_skipped.bam

891.97 kB

demux_NNNNAGGCANNN_multi.bed.gz

447.51 kB

demux_NNNNAGGCANNN_unique.bed.gz

97.87 kB

demux_NNNNAGGCANNN_unique.bedgraph

346.68 kB

iCount summary

demux_NNNNAGGCANNN_unique_summary.tsv_summary_type.tsv

261 B

demux_NNNNAGGCANNN_unique_summary.tsv_summary_gene.tsv

278.20 kB

demux_NNNNAGGCANNN_unique_summary.tsv_summary_subtype.tsv

630 B

Reads (single-end)

demux_NNNNAGGCANNN.fastq.gz

86.11 MB

fastqc

Directory

stderr.txt

975 B

demux_NNNNAGGCANNN_fastqc.zip

519.71 kB

m6A__20180109_JU

iCount summary

m6a-20180109-jufastqgz_unmapped_single_summary_subtype.tsv

639 B

m6a-20180109-jufastqgz_unmapped_single_summary_type.tsv

266 B

m6a-20180109-jufastqgz_unmapped_single_summary_gene.tsv

729.84 kB

FASTQ file (single-end)

fastqc

Directory

m6a-20180109-ju.fastq.gz

249.58 MB

m6a-20180109-ju_fastqc.zip

448.07 kB

stderr.txt

915 B

Cutadapt (single-end)

report.txt

682 B

fastqc

Directory

m6a-20180109-ju_trimmed.fastq.gz

243.87 MB

m6a-20180109-ju_trimmed_fastqc.zip

462.80 kB

STAR

m6a-20180109-ju_trimmed.bam.bai

20.56 kB

m6a-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz

93.15 MB

m6a-20180109-ju_trimmed.bam

325.65 MB

m6a-20180109-ju_trimmed_stats.txt

1.78 kB

m6a-20180109-ju_trimmed.bw

106.47 kB

m6a-20180109-ju_trimmed_SJ.out.tab

0 B

iCount xlsites

m6a-20180109-ju_trimmed_skipped.bam

3.97 kB

m6a-20180109-ju_trimmed_single.bed.gz

53.24 kB

m6a-20180109-ju_trimmed_singleAndMulti.bed.gz

76.70 kB

m6a-20180109-ju_trimmed_single.bedgraph

177 B

iCount reads proxy

m6a-20180109-jufastqgz_unmapped.fastq.gz

93.15 MB

fastqc

Directory

stderr.txt

1.26 kB

m6a-20180109-jufastqgz_unmapped_fastqc.zip

480.04 kB

STAR

m6a-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

44.66 MB

m6a-20180109-jufastqgz_unmapped.bw

24.50 kB

m6a-20180109-jufastqgz_unmapped_SJ.out.tab

160.60 kB

m6a-20180109-jufastqgz_unmapped.bam

138.50 MB

m6a-20180109-jufastqgz_unmapped_stats.txt

1.81 kB

m6a-20180109-jufastqgz_unmapped.bam.bai

2.60 MB

iCount xlsites

m6a-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz

938.59 kB

m6a-20180109-jufastqgz_unmapped_single.bed.gz

442.50 kB

m6a-20180109-jufastqgz_unmapped_skipped.bam

5.72 kB

m6a-20180109-jufastqgz_unmapped_single.bedgraph

1.72 MB

m1A__20180109_JU

FASTQ file (single-end)

fastqc

Directory

m1a-20180109-ju.fastq.gz

83.08 MB

stderr.txt

915 B

m1a-20180109-ju_fastqc.zip

548.34 kB

Cutadapt (single-end)

m1a-20180109-ju_trimmed.fastq.gz

80.57 MB

report.txt

682 B

fastqc

Directory

m1a-20180109-ju_trimmed_fastqc.zip

544.68 kB

STAR

m1a-20180109-ju_trimmed.bam

148.73 MB

m1a-20180109-ju_trimmed_unmapped.out.mate1.fastq.gz

28.94 MB

m1a-20180109-ju_trimmed_SJ.out.tab

0 B

m1a-20180109-ju_trimmed.bw

106.15 kB

m1a-20180109-ju_trimmed_stats.txt

1.79 kB

m1a-20180109-ju_trimmed.bam.bai

20.28 kB

iCount xlsites

m1a-20180109-ju_trimmed_single.bedgraph

177 B

m1a-20180109-ju_trimmed_single.bed.gz

28.18 kB

m1a-20180109-ju_trimmed_skipped.bam

3.97 kB

m1a-20180109-ju_trimmed_singleAndMulti.bed.gz

44.01 kB

iCount reads proxy

fastqc

Directory

stderr.txt

1.26 kB

m1a-20180109-jufastqgz_unmapped_fastqc.zip

614.15 kB

m1a-20180109-jufastqgz_unmapped.fastq.gz

28.94 MB

iCount xlsites

m1a-20180109-jufastqgz_unmapped_single.bed.gz

43.30 kB

m1a-20180109-jufastqgz_unmapped_singleAndMulti.bed.gz

133.31 kB

m1a-20180109-jufastqgz_unmapped_skipped.bam

2.93 kB

m1a-20180109-jufastqgz_unmapped_single.bedgraph

146.10 kB

iCount summary

m1a-20180109-jufastqgz_unmapped_single_summary_type.tsv

258 B

m1a-20180109-jufastqgz_unmapped_single_summary_subtype.tsv

620 B

m1a-20180109-jufastqgz_unmapped_single_summary_gene.tsv

149.00 kB

STAR

m1a-20180109-jufastqgz_unmapped.bam

49.62 MB

m1a-20180109-jufastqgz_unmapped_stats.txt

1.80 kB

m1a-20180109-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz

20.66 MB

m1a-20180109-jufastqgz_unmapped.bam.bai

1.71 MB

m1a-20180109-jufastqgz_unmapped_SJ.out.tab

12.47 kB

m1a-20180109-jufastqgz_unmapped.bw

18.49 kB

SAD533A163-A182_S18_L006_R1_001.fastq.gz

Reads (single-end)

fastqc

Directory

SAD533A163-A182_S18_L006_R1_001.fastq.gz

9.22 GB

stderr.txt

1.21 kB

SAD533A163-A182_S18_L006_R1_001_fastqc.zip

465.43 kB

IgG_HEK293__XXX

iCount xlsites

demux_NNNNTTTAANNN_skipped.bam

180.91 kB

demux_NNNNTTTAANNN_unique.bed.gz

123.42 kB

demux_NNNNTTTAANNN_multi.bed.gz

521.57 kB

demux_NNNNTTTAANNN_unique.bedgraph

453.52 kB

iCount summary

demux_NNNNTTTAANNN_unique_summary.tsv_summary_subtype.tsv

631 B

demux_NNNNTTTAANNN_unique_summary.tsv_summary_gene.tsv

360.10 kB

demux_NNNNTTTAANNN_unique_summary.tsv_summary_type.tsv

260 B

STAR

demux_NNNNTTTAANNN_unmapped.out.mate1.fastq.gz

6.25 MB

demux_NNNNTTTAANNN.bam.bai

2.05 MB

demux_NNNNTTTAANNN_stats.txt

1.80 kB

demux_NNNNTTTAANNN_SJ.out.tab

17.93 kB

demux_NNNNTTTAANNN.bam

64.57 MB

Reads (single-end)

demux_NNNNTTTAANNN.fastq.gz

16.64 MB

fastqc

Directory

stderr.txt

975 B

demux_NNNNTTTAANNN_fastqc.zip

439.19 kB

m6A_HEK293__XXX

Reads (single-end)

fastqc

Directory

stderr.txt

975 B

demux_NNNNTCCACNNN_fastqc.zip

441.35 kB

demux_NNNNTCCACNNN.fastq.gz

250.00 MB

iCount summary

demux_NNNNTCCACNNN_unique_summary.tsv_summary_type.tsv

267 B

demux_NNNNTCCACNNN_unique_summary.tsv_summary_subtype.tsv

640 B

demux_NNNNTCCACNNN_unique_summary.tsv_summary_gene.tsv

720.70 kB

iCount xlsites

demux_NNNNTCCACNNN_multi.bed.gz

1.32 MB

demux_NNNNTCCACNNN_skipped.bam

3.93 MB

demux_NNNNTCCACNNN_unique.bedgraph

1.73 MB

demux_NNNNTCCACNNN_unique.bed.gz

443.74 kB

STAR

demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz

97.50 MB

demux_NNNNTCCACNNN.bam

1.21 GB

demux_NNNNTCCACNNN_stats.txt

1.81 kB

demux_NNNNTCCACNNN.bam.bai

3.00 MB

demux_NNNNTCCACNNN_SJ.out.tab

176.24 kB