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Folder iconiCLIP Sm testing

Andrea Elser
May 1, 2018
Spliceosome iCLIP testing various conditions and two antibodies.

No Sample

STAR
demux_NNNNTATGANNN.bam
1.99 GB
demux_NNNNTATGANNN_SJ.out.tab
75.82 kB
demux_NNNNTATGANNN_unmapped.out.mate1.fastq.gz
61.39 MB
demux_NNNNTATGANNN.bam.bai
2.17 MB
demux_NNNNTATGANNN_stats.txt
1.81 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTATGANNN.fastq.gz
316.98 MB
demux_NNNNTATGANNN_fastqc.zip
528.17 kB
stderr.txt
975 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
145 B
Upload iCount sample annotation
iclip_annotation_template-Jul-28-2017.xlsx
15.19 kB
iclip_annotation_template-Jul-28-2017.tab.gz
870 B
iCount RNA-maps
results.tar.gz
433.66 kB
iCount xlsites
demux_NNNNTATGANNN_unique.bed.gz
145.38 kB
demux_NNNNTATGANNN_skipped.bam
1.94 MB
demux_NNNNTATGANNN_multi.bed.gz
378.51 kB
demux_NNNNTATGANNN_unique.bedgraph
533.17 kB
Reads (single-end)
demux_nomatch.fastq.gz
13.51 GB
fastqc
Directory
stderr.txt
875 B
demux_nomatch_fastqc.zip
483.27 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.15 kB
HAL614A1-A34_S14_L003_R1_001.fastq.gz
16.98 GB
HAL614A1-A34_S14_L003_R1_001_fastqc.zip
482.91 kB
iCount summary
demux_NNNNTATGANNN_unique_summary.tsv_summary_gene.tsv
352.48 kB
demux_NNNNTATGANNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNTATGANNN_unique_summary.tsv_summary_subtype.tsv
590 B

demux_nomatch.fastq.gz

Reads (single-end)
demux_nomatch.fastq.gz
13.51 GB
fastqc
Directory
stderr.txt
875 B
demux_nomatch_fastqc.zip
483.27 kB

RNA-maps (SNRPB_K562_SmB/B' RNaseI_0.4_20171201_JU)

iCount RNA-maps
results.tar.gz
433.66 kB

HAL614A1-A34_S14_L003_R1_001.fastq.gz

Reads (single-end)
fastqc
Directory
stderr.txt
1.15 kB
HAL614A1-A34_S14_L003_R1_001.fastq.gz
16.98 GB
HAL614A1-A34_S14_L003_R1_001_fastqc.zip
482.91 kB

SNRPB_K562_SmB/B' RNaseI_0.4_20171201_JU

iCount xlsites
demux_NNNNTATGANNN_unique.bed.gz
145.38 kB
demux_NNNNTATGANNN_skipped.bam
1.94 MB
demux_NNNNTATGANNN_multi.bed.gz
378.51 kB
demux_NNNNTATGANNN_unique.bedgraph
533.17 kB
STAR
demux_NNNNTATGANNN_unmapped.out.mate1.fastq.gz
61.39 MB
demux_NNNNTATGANNN.bam.bai
2.17 MB
demux_NNNNTATGANNN_stats.txt
1.81 kB
demux_NNNNTATGANNN_SJ.out.tab
75.82 kB
demux_NNNNTATGANNN.bam
1.99 GB
Reads (single-end)
fastqc
Directory
demux_NNNNTATGANNN.fastq.gz
316.98 MB
demux_NNNNTATGANNN_fastqc.zip
528.17 kB
stderr.txt
975 B
iCount summary
demux_NNNNTATGANNN_unique_summary.tsv_summary_gene.tsv
352.48 kB
demux_NNNNTATGANNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNTATGANNN_unique_summary.tsv_summary_subtype.tsv
590 B