FASTQ file (single-end)
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju.fastq.gz
83.44 MB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_fastqc.zip
438.23 kB
iCount reads proxy
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_fastqc.zip
493.37 kB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped.fastq.gz
75.72 MB
K-mers
kmer_frequency_utr3.tsv
5.78 kB
utr3 region.png
303.75 kB
kmer_frequency_ncRNA.tsv
5.70 kB
other_exon region.png
234.67 kB
intron region.png
189.90 kB
positional_distribution_intron.tsv
194.89 kB
kmer_frequency_genome.tsv
5.88 kB
positional_distribution_genome.tsv
567.12 kB
positional_distribution_utr3.tsv
520.11 kB
ncRNA region.png
272.58 kB
kmer_frequency_other_exon.tsv
5.82 kB
positional_distribution_other_exon.tsv
555.92 kB
genome region.png
282.92 kB
kmer_frequency_intron.tsv
5.21 kB
positional_distribution_ncRNA.tsv
301.99 kB
Reads (single-end)
demux_NNNNAACTCNNN.fastq.gz
196.36 MB
demux_NNNNAACTCNNN_fastqc.zip
453.58 kB
iCount xlsites
demux_NNNNCCTGCNNN_trimmed_single.bed.gz
796.77 kB
demux_NNNNCCTGCNNN_trimmed_skipped.bam
4.82 kB
demux_NNNNCCTGCNNN_trimmed_single.bedgraph
3.20 MB
demux_NNNNCCTGCNNN_trimmed_singleAndMulti.bed.gz
3.02 MB
K-mers
utr3 region.png
231.66 kB
positional_distribution_genome.tsv
502.46 kB
genome region.png
337.47 kB
kmer_frequency_other_exon.tsv
5.71 kB
positional_distribution_other_exon.tsv
278.33 kB
other_exon region.png
278.17 kB
kmer_frequency_intron.tsv
5.18 kB
positional_distribution_intron.tsv
172.07 kB
positional_distribution_ncRNA.tsv
436.18 kB
intron region.png
168.53 kB
ncRNA region.png
311.55 kB
kmer_frequency_utr3.tsv
4.71 kB
positional_distribution_utr3.tsv
178.22 kB
kmer_frequency_ncRNA.tsv
5.86 kB
kmer_frequency_genome.tsv
5.83 kB
FASTQ file (single-end)
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju.fastq.gz
94.08 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_fastqc.zip
447.26 kB
STAR
demux_NNNNGGAGCNNN_trimmed.bam
2.33 GB
demux_NNNNGGAGCNNN_trimmed.bam.bai
5.03 MB
demux_NNNNGGAGCNNN_trimmed_SJ.out.tab
552.16 kB
demux_NNNNGGAGCNNN_trimmed_unmapped.out.mate1.fastq.gz
75.04 MB
demux_NNNNGGAGCNNN_trimmed_stats.txt
1.81 kB
FASTQ file (single-end)
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju.fastq.gz
86.02 MB
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_fastqc.zip
436.72 kB
K-mers
ncRNA region.png
311.55 kB
kmer_frequency_genome.tsv
5.82 kB
positional_distribution_intron.tsv
172.07 kB
kmer_frequency_intron.tsv
5.18 kB
intron region.png
168.53 kB
other_exon region.png
278.17 kB
positional_distribution_utr3.tsv
178.22 kB
positional_distribution_ncRNA.tsv
436.18 kB
utr3 region.png
231.66 kB
kmer_frequency_other_exon.tsv
5.71 kB
genome region.png
323.61 kB
kmer_frequency_ncRNA.tsv
5.86 kB
kmer_frequency_utr3.tsv
4.71 kB
positional_distribution_other_exon.tsv
278.33 kB
positional_distribution_genome.tsv
502.22 kB
Reads (single-end)
demux_NNNNGCTTGAGGNNNNN.fastq.gz
21.33 MB
demux_NNNNGCTTGAGGNNNNN_fastqc.zip
403.65 kB
Upload iCount sample annotation
20190110_JU_UN1812_PG_Lane36_CD8s_reupload.xlsx
10.51 kB
20190110_JU_UN1812_PG_Lane36_CD8s_reupload.tab.gz
704 B
Cutadapt (single-end)
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed.fastq.gz
115.24 MB
Reads (single-end)
demux_NNNNCTGTANNN.fastq.gz
124.86 MB
demux_NNNNCTGTANNN_fastqc.zip
460.69 kB
Cutadapt (single-end)
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed_fastqc.zip
458.23 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed.fastq.gz
13.07 MB
iCount summary
demux_NNNNGATCGNNN_unique_summary.tsv_summary_subtype.tsv
640 B
demux_NNNNGATCGNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNGATCGNNN_unique_summary.tsv_summary_gene.tsv
810.13 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_skipped.bam
3.17 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_single.bedgraph
4.89 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
1.21 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_single.bed.gz
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
2.50 MB
STAR
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
2.58 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam
3.97 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam.bai
6.43 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bw
103.14 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_stats.txt
1.77 kB
iCount summary
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_type.tsv
469 B
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_gene.tsv
1.67 MB
iCount summary
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_gene.tsv
1.30 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_type.tsv
465 B
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_subtype.tsv
1.00 kB
STAR
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam
212.45 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bw
106.10 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
142.44 MB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
44.72 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam
173.30 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
iCount reads proxy
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped.fastq.gz
584.90 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_fastqc.zip
422.93 kB
STAR
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
87.13 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam
130.58 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bw
105.80 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_stats.txt
1.78 kB
iCount summary
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
452 B
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
530.47 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
879 B
iCount reads proxy
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_fastqc.zip
483.20 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped.fastq.gz
44.72 MB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
1.98 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
957.59 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_skipped.bam
3.51 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single.bed.gz
878.28 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single.bedgraph
3.69 MB
STAR
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
10.12 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped.bam
127.56 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped.bam.bai
3.39 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_SJ.out.tab
1.80 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped.bw
28.94 kB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
3.10 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_single.bed.gz
1.79 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
2.08 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_single.bedgraph
8.35 MB
FASTQ file (single-end)
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_fastqc.zip
412.85 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju.fastq.gz
131.26 MB
iCount summary
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
479 B
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.04 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.94 MB
STAR
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
136.83 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam.bai
20.28 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam
197.17 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bw
104.80 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped.fastq.gz
56.98 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_fastqc.zip
477.77 kB
FASTQ file (single-end)
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju.fastq.gz
82.67 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_fastqc.zip
452.46 kB
iCount reads proxy
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped.fastq.gz
50.69 kB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_fastqc.zip
512.77 kB
K-mers
positional_distribution_intron.tsv
402.94 kB
kmer_frequency_utr3.tsv
4.45 kB
ncRNA region.png
267.29 kB
positional_distribution_genome.tsv
555.83 kB
kmer_frequency_intron.tsv
5.88 kB
intron region.png
249.24 kB
positional_distribution_ncRNA.tsv
510.82 kB
other_exon region.png
261.20 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_ncRNA.tsv
5.85 kB
positional_distribution_utr3.tsv
139.99 kB
utr3 region.png
153.46 kB
kmer_frequency_other_exon.tsv
5.34 kB
positional_distribution_other_exon.tsv
208.32 kB
genome region.png
193.37 kB
STAR
demux_NNNNATACGNNN_trimmed_unmapped.out.mate1.fastq.gz
55.58 MB
demux_NNNNATACGNNN_trimmed.bam
1.74 GB
demux_NNNNATACGNNN_trimmed_SJ.out.tab
252.12 kB
demux_NNNNATACGNNN_trimmed_stats.txt
1.81 kB
demux_NNNNATACGNNN_trimmed.bam.bai
4.18 MB
Reads (single-end)
demux_NNNNTCGAGNNN.fastq.gz
37.33 MB
demux_NNNNTCGAGNNN_fastqc.zip
395.35 kB
Reads (single-end)
demux_NNNNAGTCCNNN.fastq.gz
260.54 MB
demux_NNNNAGTCCNNN_fastqc.zip
491.83 kB
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
471 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.16 MB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single.bed.gz
1.02 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_skipped.bam
3.11 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
2.24 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single.bedgraph
4.42 MB
K-mers
kmer_frequency_intron.tsv
5.85 kB
positional_distribution_ncRNA.tsv
528.31 kB
positional_distribution_intron.tsv
443.15 kB
kmer_frequency_ncRNA.tsv
5.82 kB
positional_distribution_utr3.tsv
158.55 kB
utr3 region.png
184.79 kB
ncRNA region.png
301.99 kB
genome region.png
211.57 kB
kmer_frequency_other_exon.tsv
5.62 kB
positional_distribution_other_exon.tsv
212.68 kB
intron region.png
262.00 kB
kmer_frequency_utr3.tsv
4.98 kB
other_exon region.png
276.59 kB
positional_distribution_genome.tsv
562.01 kB
kmer_frequency_genome.tsv
5.91 kB
Cutadapt (single-end)
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed.fastq.gz
100.45 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed_fastqc.zip
459.47 kB
iCount reads proxy
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped.fastq.gz
17.73 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_fastqc.zip
465.44 kB
FASTQ file (single-end)
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju.fastq.gz
77.55 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_fastqc.zip
439.40 kB
STAR
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam.bai
19.44 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam
136.30 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
94.65 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bw
104.59 kB
iCount reads proxy
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped.fastq.gz
25.75 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_fastqc.zip
464.65 kB
Cutadapt (single-end)
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed.fastq.gz
54.35 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed_fastqc.zip
458.13 kB
iCount summary
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_type.tsv
470 B
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_gene.tsv
1.54 MB
K-mers
other_exon region.png
265.68 kB
kmer_frequency_ncRNA.tsv
5.85 kB
positional_distribution_utr3.tsv
149.05 kB
positional_distribution_intron.tsv
408.24 kB
kmer_frequency_utr3.tsv
4.52 kB
genome region.png
201.05 kB
utr3 region.png
151.78 kB
ncRNA region.png
278.32 kB
positional_distribution_genome.tsv
554.62 kB
kmer_frequency_intron.tsv
5.88 kB
kmer_frequency_other_exon.tsv
5.53 kB
positional_distribution_ncRNA.tsv
509.02 kB
positional_distribution_other_exon.tsv
212.07 kB
intron region.png
229.22 kB
kmer_frequency_genome.tsv
5.86 kB
STAR
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam.bai
20.49 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bw
104.79 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam
190.59 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
132.64 MB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_fastqc.zip
504.33 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju.fastq.gz
92.59 MB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
61.77 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
63.66 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
95.49 kB
iCount xlsites
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz
26.29 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
47.14 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph
256 B
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz
26.90 kB
FASTQ file (single-end)
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju.fastq.gz
90.33 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_fastqc.zip
460.64 kB
Cutadapt (single-end)
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed_fastqc.zip
455.35 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed.fastq.gz
79.49 MB
K-mers
kmer_frequency_intron.tsv
5.77 kB
positional_distribution_ncRNA.tsv
508.80 kB
kmer_frequency_ncRNA.tsv
5.82 kB
other_exon region.png
258.81 kB
intron region.png
233.12 kB
positional_distribution_intron.tsv
245.35 kB
kmer_frequency_utr3.tsv
5.71 kB
positional_distribution_utr3.tsv
333.28 kB
kmer_frequency_genome.tsv
5.84 kB
positional_distribution_other_exon.tsv
436.87 kB
ncRNA region.png
291.28 kB
positional_distribution_genome.tsv
548.65 kB
kmer_frequency_other_exon.tsv
5.88 kB
utr3 region.png
269.88 kB
genome region.png
304.85 kB
K-mers
positional_distribution_intron.tsv
162.28 kB
other_exon region.png
194.46 kB
ncRNA region.png
250.89 kB
kmer_frequency_intron.tsv
5.11 kB
intron region.png
157.15 kB
kmer_frequency_ncRNA.tsv
5.67 kB
positional_distribution_ncRNA.tsv
294.45 kB
kmer_frequency_genome.tsv
5.83 kB
kmer_frequency_utr3.tsv
5.83 kB
utr3 region.png
238.45 kB
positional_distribution_genome.tsv
569.89 kB
positional_distribution_other_exon.tsv
565.72 kB
kmer_frequency_other_exon.tsv
5.91 kB
positional_distribution_utr3.tsv
535.94 kB
genome region.png
244.38 kB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
34.07 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam
167.37 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
K-mers
kmer_frequency_intron.tsv
5.83 kB
positional_distribution_ncRNA.tsv
555.17 kB
other_exon region.png
139.00 kB
positional_distribution_intron.tsv
532.12 kB
utr3 region.png
212.22 kB
kmer_frequency_ncRNA.tsv
5.85 kB
positional_distribution_utr3.tsv
566.90 kB
kmer_frequency_other_exon.tsv
5.86 kB
ncRNA region.png
268.07 kB
intron region.png
268.06 kB
kmer_frequency_utr3.tsv
5.90 kB
genome region.png
147.49 kB
positional_distribution_other_exon.tsv
573.60 kB
kmer_frequency_genome.tsv
5.81 kB
positional_distribution_genome.tsv
562.07 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_fastqc.zip
485.93 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped.fastq.gz
34.07 MB
STAR
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed_unmapped.out.mate1.fastq.gz
22.32 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed.bam
143.57 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed_SJ.out.tab
0 B
STAR
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed_unmapped.out.mate1.fastq.gz
14.06 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed.bam
100.65 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed_SJ.out.tab
0 B
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed.bam.bai
20.56 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
15.69 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped.bam
79.04 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped.bam.bai
3.79 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_SJ.out.tab
334.19 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped.bw
27.91 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
55.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
80.26 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
58.18 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
STAR
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
9.77 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped.bam.bai
3.25 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped.bw
25.79 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped.bam
84.26 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_SJ.out.tab
1.26 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_single.bed.gz
25.57 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
32.62 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_reads_single.bed.gz
27.64 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_single.bedgraph
258 B
iCount xlsites
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_skipped.bam
4.01 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_reads_single.bed.gz
1.60 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single.bed.gz
1.59 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_singleAndMulti.bed.gz
7.77 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single.bedgraph
6.41 MB
FASTQ file (single-end)
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju.fastq.gz
147.93 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_fastqc.zip
450.53 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped.bam.bai
3.45 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped.bam
56.93 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
8.52 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped.bw
27.25 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_SJ.out.tab
359.78 kB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz
27.51 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz
28.31 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph
258 B
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
34.66 kB
iCount reads proxy
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_fastqc.zip
420.77 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped.fastq.gz
74.39 MB
iCount reads proxy
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_fastqc.zip
443.71 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped.fastq.gz
41.32 MB
iCount xlsites
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz
16.04 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
19.44 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz
16.56 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph
256 B
iCount summary
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_single_summary_subtype.tsv
1.04 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_single_summary_gene.tsv
1.94 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_single_summary_type.tsv
481 B
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single.bed.gz
1.58 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
4.04 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_skipped.bam
3.09 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single.bedgraph
6.97 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
1.73 MB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
164.11 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
463.87 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
464.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
95.68 MB
Cutadapt (single-end)
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_fastqc.zip
449.27 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.fastq.gz
108.53 MB
STAR
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam
835.91 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
584.90 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bw
106.45 kB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_skipped.bam
4.00 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_single.bed.gz
15.66 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
17.12 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
22.32 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_single.bedgraph
77.05 MB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.fastq.gz
85.09 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
477.68 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju.fastq.gz
77.69 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_fastqc.zip
479.36 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped.fastq.gz
24.08 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_fastqc.zip
491.93 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_fastqc.zip
480.11 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped.fastq.gz
40.71 MB
FASTQ file (single-end)
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju.fastq.gz
114.31 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_fastqc.zip
460.40 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_fastqc.zip
480.60 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju.fastq.gz
81.46 MB
iCount summary
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
452 B
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
879 B
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
530.47 kB
iCount summary
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.42 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
983 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
467 B
K-mers
kmer_frequency_intron.tsv
5.56 kB
positional_distribution_ncRNA.tsv
476.92 kB
intron region.png
224.21 kB
kmer_frequency_genome.tsv
5.82 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_utr3.tsv
246.84 kB
kmer_frequency_utr3.tsv
5.26 kB
positional_distribution_intron.tsv
192.24 kB
genome region.png
320.85 kB
positional_distribution_genome.tsv
533.36 kB
utr3 region.png
249.07 kB
ncRNA region.png
282.52 kB
positional_distribution_other_exon.tsv
363.53 kB
kmer_frequency_other_exon.tsv
5.85 kB
other_exon region.png
258.64 kB
K-mers
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_intron.tsv
5.47 kB
positional_distribution_other_exon.tsv
326.82 kB
positional_distribution_ncRNA.tsv
473.48 kB
positional_distribution_intron.tsv
200.24 kB
intron region.png
185.92 kB
kmer_frequency_other_exon.tsv
5.83 kB
ncRNA region.png
253.25 kB
kmer_frequency_utr3.tsv
5.44 kB
other_exon region.png
258.74 kB
positional_distribution_utr3.tsv
248.04 kB
utr3 region.png
261.55 kB
kmer_frequency_genome.tsv
5.81 kB
positional_distribution_genome.tsv
529.80 kB
genome region.png
326.19 kB
K-mers
other_exon region.png
199.20 kB
kmer_frequency_ncRNA.tsv
5.67 kB
intron region.png
167.62 kB
kmer_frequency_other_exon.tsv
5.92 kB
kmer_frequency_genome.tsv
5.82 kB
positional_distribution_utr3.tsv
535.29 kB
positional_distribution_intron.tsv
167.67 kB
kmer_frequency_utr3.tsv
5.83 kB
genome region.png
246.62 kB
positional_distribution_other_exon.tsv
566.41 kB
ncRNA region.png
250.94 kB
utr3 region.png
238.71 kB
kmer_frequency_intron.tsv
4.95 kB
positional_distribution_genome.tsv
569.69 kB
positional_distribution_ncRNA.tsv
292.37 kB
FASTQ file (single-end)
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju.fastq.gz
73.55 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_fastqc.zip
424.87 kB
FASTQ file (single-end)
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju.fastq.gz
40.97 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_fastqc.zip
444.54 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.fastq.gz
79.55 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
481.15 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
472.79 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
83.33 MB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
73.01 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
70.24 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
133.17 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
Cutadapt (single-end)
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.fastq.gz
2.68 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_fastqc.zip
525.72 kB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bed.gz
25.35 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
45.62 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_reads_single.bed.gz
27.05 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bedgraph
258 B
iCount reads proxy
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped.fastq.gz
144.69 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_fastqc.zip
445.71 kB
iCount xlsites
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bed.gz
29.73 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
55.24 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_reads_single.bed.gz
31.57 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bedgraph
262 B
iCount reads proxy
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped.fastq.gz
107.47 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_fastqc.zip
455.61 kB
STAR
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
47.42 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam
74.42 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bw
106.02 kB
Cutadapt (single-end)
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.fastq.gz
94.15 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_fastqc.zip
446.33 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
25.10 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.bam
132.60 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
Cutadapt (single-end)
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.fastq.gz
132.23 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip
421.22 kB
STAR
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam.bai
6.43 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
2.58 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam
3.97 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_stats.txt
1.77 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bw
103.14 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_single.bed.gz
128.11 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
137.56 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_single.bedgraph
502.43 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
251.33 kB
iCount reads proxy
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped.fastq.gz
2.58 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_fastqc.zip
527.70 kB
iCount summary
demux_NNNNCACAGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
644 B
demux_NNNNCACAGNNN_trimmed_single_summary.tsv_summary_gene.tsv
946.73 kB
demux_NNNNCACAGNNN_trimmed_single_summary.tsv_summary_type.tsv
269 B
iCount xlsites
demux_NNNNATACGNNN_trimmed_singleAndMulti.bed.gz
2.70 MB
demux_NNNNATACGNNN_trimmed_skipped.bam
3.49 kB
demux_NNNNATACGNNN_trimmed_single.bed.gz
663.51 kB
demux_NNNNATACGNNN_trimmed_single.bedgraph
2.64 MB
iCount reads proxy
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped.fastq.gz
47.42 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
464.89 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.fastq.gz
146.47 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_fastqc.zip
447.19 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.fastq.gz
88.36 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_fastqc.zip
449.79 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.fastq.gz
143.76 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip
447.82 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip
440.08 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.fastq.gz
88.65 MB
iCount summary
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
464 B
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.25 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
975 B
iCount summary
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
985 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
472 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.33 MB
iCount summary
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
465 B
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.34 MB
K-mers
kmer_frequency_intron.tsv
4.98 kB
positional_distribution_ncRNA.tsv
187.83 kB
other_exon region.png
219.71 kB
positional_distribution_intron.tsv
169.26 kB
kmer_frequency_utr3.tsv
5.78 kB
ncRNA region.png
186.68 kB
positional_distribution_genome.tsv
564.39 kB
intron region.png
209.02 kB
kmer_frequency_ncRNA.tsv
4.95 kB
kmer_frequency_genome.tsv
5.88 kB
utr3 region.png
254.07 kB
positional_distribution_utr3.tsv
517.05 kB
kmer_frequency_other_exon.tsv
5.81 kB
positional_distribution_other_exon.tsv
556.42 kB
genome region.png
284.42 kB
K-mers
kmer_frequency_intron.tsv
5.11 kB
positional_distribution_utr3.tsv
535.94 kB
positional_distribution_ncRNA.tsv
294.45 kB
positional_distribution_intron.tsv
162.28 kB
genome region.png
244.38 kB
kmer_frequency_utr3.tsv
5.83 kB
intron region.png
156.80 kB
ncRNA region.png
250.89 kB
positional_distribution_genome.tsv
569.89 kB
utr3 region.png
238.45 kB
kmer_frequency_other_exon.tsv
5.91 kB
kmer_frequency_genome.tsv
5.83 kB
positional_distribution_other_exon.tsv
565.72 kB
other_exon region.png
197.31 kB
kmer_frequency_ncRNA.tsv
5.67 kB
STAR
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
108.07 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam
166.46 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bw
105.94 kB
STAR
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
86.45 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam
138.29 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bw
106.25 kB
STAR
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bam
216.13 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
142.97 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.bw
106.10 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab
0 B
Reads (single-end)
L3modified_merged_GAM599A61-A87_S16_L005_R1_001.fastq.gz
7.79 GB
L3modified_merged_GAM599A61-A87_S16_L005_R1_001_fastqc.zip
656.51 kB
STAR
demux_NNNNAACTCNNN_trimmed_stats.txt
1.81 kB
demux_NNNNAACTCNNN_trimmed_unmapped.out.mate1.fastq.gz
44.70 MB
demux_NNNNAACTCNNN_trimmed_SJ.out.tab
320.86 kB
demux_NNNNAACTCNNN_trimmed.bam.bai
4.19 MB
demux_NNNNAACTCNNN_trimmed.bam
1.37 GB
iCount summary
demux_NNNNAGTCCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
646 B
demux_NNNNAGTCCNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.02 MB
demux_NNNNAGTCCNNN_trimmed_single_summary.tsv_summary_type.tsv
268 B
iCount summary
demux_NNNNCCTGCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
644 B
demux_NNNNCCTGCNNN_trimmed_single_summary.tsv_summary_gene.tsv
875.55 kB
demux_NNNNCCTGCNNN_trimmed_single_summary.tsv_summary_type.tsv
268 B
Reads (single-end)
demux_NNNNCATACNNN.fastq.gz
460.90 MB
demux_NNNNCATACNNN_fastqc.zip
465.04 kB
Cutadapt (single-end)
demux_NNNNCATACNNN_trimmed.fastq.gz
453.40 MB
demux_NNNNCATACNNN_trimmed_fastqc.zip
431.42 kB
iCount xlsites
demux_NNNNAGTCCNNN_trimmed_singleAndMulti.bed.gz
5.12 MB
demux_NNNNAGTCCNNN_trimmed_skipped.bam
3.70 kB
demux_NNNNAGTCCNNN_trimmed_single.bed.gz
1.52 MB
demux_NNNNAGTCCNNN_trimmed_single.bedgraph
6.57 MB
Reads (single-end)
demux_NNNNGTTTCNNN_fastqc.zip
455.71 kB
demux_NNNNGTTTCNNN.fastq.gz
379.61 MB
Cutadapt (single-end)
demux_NNNNTCGCCNNN_trimmed.fastq.gz
252.31 MB
demux_NNNNTCGCCNNN_trimmed_fastqc.zip
434.06 kB
Cutadapt (single-end)
demux_NNNNTCGAGNNN_trimmed.fastq.gz
15.68 MB
demux_NNNNTCGAGNNN_trimmed_fastqc.zip
456.23 kB
Reads (single-end)
demux_NNNNATACGNNN.fastq.gz
247.52 MB
demux_NNNNATACGNNN_fastqc.zip
477.43 kB
iCount xlsites
demux_NNNNAACTCNNN_trimmed_single.bed.gz
870.69 kB
demux_NNNNAACTCNNN_trimmed_skipped.bam
3.80 kB
demux_NNNNAACTCNNN_trimmed_singleAndMulti.bed.gz
3.32 MB
demux_NNNNAACTCNNN_trimmed_single.bedgraph
3.51 MB
iCount xlsites
demux_NNNNGTTTCNNN_trimmed_single.bed.gz
2.06 MB
demux_NNNNGTTTCNNN_trimmed_singleAndMulti.bed.gz
7.27 MB
demux_NNNNGTTTCNNN_trimmed_skipped.bam
3.25 kB
demux_NNNNGTTTCNNN_trimmed_single.bedgraph
8.82 MB
Cutadapt (single-end)
demux_NNNNATACGNNN_trimmed.fastq.gz
243.11 MB
demux_NNNNATACGNNN_trimmed_fastqc.zip
430.96 kB
iCount summary
demux_NNNNCATACNNN_trimmed_single_summary.tsv_summary_type.tsv
271 B
demux_NNNNCATACNNN_trimmed_single_summary.tsv_summary_subtype.tsv
650 B
demux_NNNNCATACNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.19 MB
iCount summary
demux_NNNNGTTTCNNN_trimmed_single_summary.tsv_summary_type.tsv
269 B
demux_NNNNGTTTCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
645 B
demux_NNNNGTTTCNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.09 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
92.98 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz
51.51 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph
258 B
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz
50.41 kB
iCount summary
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.52 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
iCount summary
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_gene.tsv
1.46 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_type.tsv
472 B
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
STAR
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz
64.50 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed.bam
326.71 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_SJ.out.tab
0 B
Cutadapt (single-end)
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_fastqc.zip
485.49 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed.fastq.gz
201.27 MB
iCount xlsites
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single.bed.gz
2.51 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_skipped.bam
3.92 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single.bedgraph
11.27 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_singleAndMulti.bed.gz
5.89 MB
Cutadapt (single-end)
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_fastqc.zip
485.49 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed.fastq.gz
201.27 MB
iCount xlsites
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_singleAndMulti.bed.gz
7.48 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_single.bed.gz
2.71 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_single.bedgraph
12.07 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_skipped.bam
4.17 kB
iCount summary
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_single_summary_type.tsv
272 B
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_single_summary_gene.tsv
1.18 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_single_summary_subtype.tsv
650 B
STAR
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz
47.49 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed.bam.bai
4.74 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed.bam
1.56 GB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_SJ.out.tab
749.71 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_stats.txt
1.81 kB
iCount reads proxy
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_fastqc.zip
499.62 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped.fastq.gz
64.50 MB
iCount xlsites
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_singleAndMulti.bed.gz
157.19 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_single.bed.gz
87.75 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_trimmed_single.bedgraph
262 B
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single.bed.gz
2.88 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_singleAndMulti.bed.gz
6.76 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_skipped.bam
4.41 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single.bedgraph
13.27 MB
STAR
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped.bam.bai
4.16 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped.bam
156.73 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped.bw
41.48 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_SJ.out.tab
902.84 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
28.11 MB
FASTQ file (single-end)
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_fastqc.zip
543.67 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju.fastq.gz
225.23 MB
Cutadapt (single-end)
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed.fastq.gz
213.45 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_fastqc.zip
500.28 kB
iCount summary
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_single_summary_type.tsv
273 B
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_single_summary_subtype.tsv
648 B
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_single_summary_gene.tsv
1.20 MB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_singleAndMulti.bed.gz
180.48 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_single.bedgraph
264 B
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_single.bed.gz
99.13 kB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_skipped.bam
5.06 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_single.bedgraph
14.22 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_singleAndMulti.bed.gz
8.62 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_single.bed.gz
3.12 MB
iCount reads proxy
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped.fastq.gz
67.60 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_fastqc.zip
514.47 kB
FASTQ file (single-end)
m6a-cd8-t-cells-igg-total-rna-20200123-ju.fastq.gz
10.34 MB
m6a-cd8-t-cells-igg-total-rna-20200123-ju_fastqc.zip
515.20 kB
iCount reads proxy
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped.fastq.gz
6.19 MB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_fastqc.zip
548.12 kB
Cutadapt (single-end)
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.fastq.gz
9.42 MB
STAR
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.bam.bai
20.07 kB
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
6.19 MB
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.bw
105.40 kB
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed.bam
10.88 MB
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_stats.txt
1.78 kB
iCount xlsites
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_reads_single.bed.gz
38.02 kB
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_single.bed.gz
36.12 kB
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_singleAndMulti.bed.gz
45.27 kB
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_single.bedgraph
230 B
m6a-cd8-t-cells-igg-total-rna-20200123-ju_trimmed_skipped.bam
3.93 kB
STAR
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped.bam.bai
2.10 MB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
2.57 MB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped.bw
20.16 kB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_SJ.out.tab
166.25 kB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped.bam
10.46 MB
Paraclu
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_single_peaks.bed.gz
1.44 kB
FASTQ file (single-end)
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju.fastq.gz
99.48 MB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_fastqc.zip
439.09 kB
iCount summary
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_type.tsv
468 B
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_gene.tsv
1.47 MB
iCount summary
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_type.tsv
468 B
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single_summary_gene.tsv
1.61 MB
iCount summary
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_type.tsv
472 B
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_gene.tsv
1.63 MB
iCount summary
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_type.tsv
468 B
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single_summary_gene.tsv
1.62 MB
iCount xlsites
demux_NNNNCATACNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
202.84 kB
demux_NNNNCATACNNN_trimmed_trimmed_trimmed_single.bedgraph
240 B
demux_NNNNCATACNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNCATACNNN_trimmed_trimmed_trimmed_single.bed.gz
92.38 kB
K-mers
positional_distribution_genome.tsv
63.85 kB
intron region.png
111.46 kB
kmer_frequency_intron.tsv
451 B
positional_distribution_intron.tsv
31.71 kB
kmer_frequency_genome.tsv
897 B
genome region.png
130.56 kB
STAR
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.bam
47.38 MB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.10 MB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_SJ.out.tab
295.79 kB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.bw
33.27 kB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.bam.bai
4.28 MB
STAR
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_SJ.out.tab
181.25 kB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped.bam
114.31 MB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
27.87 MB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_stats.txt
1.81 kB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped.bw
26.15 kB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped.bam.bai
3.10 MB
iCount RNA-maps
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_single.tar.gz
491.80 kB
Paraclu
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_peaks.bed.gz
12.86 kB
iCount summary
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_gene.tsv
1.55 MB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_type.tsv
473 B
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
STAR
m62a-cd8-t-cells-day5-donor1-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
80.23 MB
m62a-cd8-t-cells-day5-donor1-20200123-ju_trimmed.bam.bai
20.56 kB
m62a-cd8-t-cells-day5-donor1-20200123-ju_trimmed_stats.txt
1.79 kB
m62a-cd8-t-cells-day5-donor1-20200123-ju_trimmed.bam
404.07 MB
m62a-cd8-t-cells-day5-donor1-20200123-ju_trimmed_SJ.out.tab
0 B
Reads (single-end)
demux_NNNNGCTTGTTANNNNN.fastq.gz
33.90 MB
demux_NNNNGCTTGTTANNNNN_fastqc.zip
412.06 kB
iCount xlsites
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
4.20 MB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single.bed.gz
1.48 MB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_skipped.bam
3.44 kB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_reads_single.bed.gz
1.51 MB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single.bedgraph
6.27 MB
iCount xlsites
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_skipped.bam
3.52 kB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
3.18 MB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_reads_single.bed.gz
1.01 MB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single.bedgraph
4.13 MB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single.bed.gz
1014.42 kB
iCount reads proxy
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped.fastq.gz
52.63 MB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_fastqc.zip
598.51 kB
iCount summary
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_gene.tsv
1.34 MB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_type.tsv
467 B
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
iCount summary
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_type.tsv
465 B
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_gene.tsv
1.29 MB
STAR
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped.bam
56.86 MB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
18.01 MB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped.bw
22.03 kB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped.bam.bai
2.40 MB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_stats.txt
1.80 kB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_SJ.out.tab
79.08 kB
K-mers
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped.tar.gz
300.45 kB
iCount xlsites
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_skipped.bam
3.57 kB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
769.47 kB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_single.bed.gz
237.32 kB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_reads_single.bed.gz
266.83 kB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_single.bedgraph
907.44 kB
iCount xlsites
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
668.11 kB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_skipped.bam
2.90 kB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_single.bed.gz
167.52 kB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_reads_single.bed.gz
188.15 kB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_single.bedgraph
623.01 kB
iCount xlsites
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_skipped.bam
3.40 kB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_single.bedgraph
1.46 MB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_single.bed.gz
382.93 kB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
1.42 MB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_reads_single.bed.gz
430.21 kB
iCount xlsites
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_reads_single.bed.gz
536.04 kB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_skipped.bam
4.65 kB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
1.64 MB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_single.bed.gz
472.42 kB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_single.bedgraph
1.84 MB
iCount summary
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_single_summary_type.tsv
470 B
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_single_summary_gene.tsv
874.23 kB
iCount summary
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
945 B
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_single_summary_type.tsv
454 B
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_single_summary_gene.tsv
627.10 kB
K-mers
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped.tar.gz
290.33 kB
Paraclu
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_single_peaks.bed.gz
4.61 kB
iCount RNA-maps
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_single.tar.gz
525.04 kB
iCount clusters
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_clustered.bed.gz
305.36 kB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_clustered.bedgraph
681.15 kB
STAR
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped.bam.bai
3.94 MB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
6.93 MB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped.bam
61.44 MB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped.bw
35.25 kB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_SJ.out.tab
449.67 kB
iCount group
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped.bedgraph
10.61 MB
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped.bed.gz
2.41 MB
iCount group
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped.bed.gz
1.46 MB
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped.bedgraph
6.24 MB
iCount xlsites
demux_NNNNGGAGCNNN_skipped.bam
6.12 MB
demux_NNNNGGAGCNNN_unique.bed.gz
2.30 MB
demux_NNNNGGAGCNNN_multi.bed.gz
7.24 MB
demux_NNNNGGAGCNNN_unique.bedgraph
9.99 MB
Reads (single-end)
demux_NNNNTCGAGTTANNNNN.fastq.gz
33.30 MB
demux_NNNNTCGAGTTANNNNN_fastqc.zip
405.82 kB
Reads (single-end)
demux_NNNNGATCGNNN_fastqc.zip
463.18 kB
demux_NNNNGATCGNNN.fastq.gz
194.66 MB
Reads (single-end)
demux_NNNNTCGAGGTCNNNNN.fastq.gz
38.84 MB
demux_NNNNTCGAGGTCNNNNN_fastqc.zip
395.71 kB
STAR
demux_NNNNCCTGCNNN_unmapped.out.mate1.fastq.gz
60.63 MB
demux_NNNNCCTGCNNN.bam.bai
4.05 MB
demux_NNNNCCTGCNNN_SJ.out.tab
284.67 kB
demux_NNNNCCTGCNNN_stats.txt
1.81 kB
demux_NNNNCCTGCNNN.bam
1.43 GB
STAR
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped.bam
134.10 MB
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
20.77 MB
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_SJ.out.tab
165.98 kB
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped.bam.bai
3.98 MB
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped.bw
29.56 kB
STAR
demux_NNNNTCATCNNN.bam.bai
4.67 MB
demux_NNNNTCATCNNN_unmapped.out.mate1.fastq.gz
95.07 MB
demux_NNNNTCATCNNN.bam
2.43 GB
demux_NNNNTCATCNNN_stats.txt
1.81 kB
demux_NNNNTCATCNNN_SJ.out.tab
424.38 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
629 B
iCount group
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped.bed.gz
1.15 MB
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped.bedgraph
4.83 MB
iCount group
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_grouped_cdna.bed.gz
39.42 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_grouped_cdna.bedgraph
116.87 kB
iCount group
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_grouped_cdna.bed.gz
1.80 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_grouped_cdna.bedgraph
8.38 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_grouped_reads.bed.gz
2.09 MB
Reads (single-end)
demux_NNNNTCGAGNNN.fastq.gz
458.98 MB
demux_NNNNTCGAGNNN_fastqc.zip
440.94 kB
iCount peaks
demux_NNNNAACTCNNN_unique_peaks.bed.gz
106.97 kB
demux_NNNNAACTCNNN_unique_scores.tsv.gz
898.48 kB
demux_NNNNAACTCNNN_unique_peaks.bedgraph
245.55 kB
Reads (single-end)
demux_NNNNAACTCNNN.fastq.gz
199.00 MB
demux_NNNNAACTCNNN_fastqc.zip
466.59 kB
Reads (single-end)
demux_NNNNCCTGCNNN.fastq.gz
203.76 MB
demux_NNNNCCTGCNNN_fastqc.zip
457.99 kB
Reads (single-end)
demux_NNNNATACGNNN.fastq.gz
256.74 MB
demux_NNNNATACGNNN_fastqc.zip
447.17 kB
Cutadapt (single-end)
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed_fastqc.zip
499.63 kB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed.fastq.gz
327.19 MB
Reads (single-end)
demux_NNNNGCTCTNNN.fastq.gz
30.63 MB
demux_NNNNGCTCTNNN_fastqc.zip
460.58 kB
iCount clusters
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_clustered.bed.gz
260.30 kB
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_clustered.bedgraph
508.51 kB
STAR
demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz
41.80 MB
demux_NNNNAGGCANNN.bam.bai
2.92 MB
demux_NNNNAGGCANNN_SJ.out.tab
72.41 kB
demux_NNNNAGGCANNN.bam
604.26 MB
demux_NNNNAGGCANNN_stats.txt
1.81 kB
STAR
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped.bam
112.16 MB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped.bam.bai
3.68 MB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped.bw
28.94 kB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_SJ.out.tab
270.36 kB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
20.31 MB
STAR
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
72.90 MB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed.bam
418.12 MB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed_stats.txt
1.79 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju.fastq.gz
335.70 MB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_fastqc.zip
555.55 kB
STAR
demux_NNNNTCGAGATTNNNNN.bam
151.13 MB
demux_NNNNTCGAGATTNNNNN.bam.bai
3.85 MB
demux_NNNNTCGAGATTNNNNN_SJ.out.tab
102.73 kB
demux_NNNNTCGAGATTNNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGATTNNNNN_unmapped.out.mate1.fastq.gz
16.42 MB
Reads (single-end)
demux_nomatch.fastq.gz
6.48 GB
demux_nomatch_fastqc.zip
494.69 kB
iCount clusters
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_clustered.bed.gz
282.95 kB
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_clustered.bedgraph
558.85 kB
iCount group
Input_S2HG Donors1&2&3_20180223_JU_grouped.bedgraph
3.50 MB
Input_S2HG Donors1&2&3_20180223_JU_grouped.bed.gz
889.45 kB
iCount clusters
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_clustered.bed.gz
79.01 kB
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_clustered.bedgraph
131.87 kB
iCount clusters
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_clustered.bed.gz
128.46 kB
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_clustered.bedgraph
230.80 kB
iCount clusters
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_clustered.bed.gz
110.03 kB
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_clustered.bedgraph
182.95 kB
STAR
demux_NNNNCAGGGNNN_unmapped.out.mate1.fastq.gz
163.08 MB
demux_NNNNCAGGGNNN_stats.txt
1.81 kB
demux_NNNNCAGGGNNN.bam.bai
3.70 MB
demux_NNNNCAGGGNNN.bam
1.84 GB
demux_NNNNCAGGGNNN_SJ.out.tab
220.48 kB
iCount xlsites
demux_NNNNCACAGTGCNNNNN_multi.bed.gz
1.78 MB
demux_NNNNCACAGTGCNNNNN_unique.bedgraph
1.03 MB
demux_NNNNCACAGTGCNNNNN_unique.bed.gz
276.18 kB
demux_NNNNCACAGTGCNNNNN_skipped.bam
331.20 kB
Reads (single-end)
demux_NNNNTCGAGATTNNNNN.fastq.gz
28.31 MB
demux_NNNNTCGAGATTNNNNN_fastqc.zip
420.20 kB
iCount peaks
demux_NNNNCACAGNNN_unique_scores.tsv.gz
917.34 kB
demux_NNNNCACAGNNN_unique_peaks.bedgraph
359.15 kB
demux_NNNNCACAGNNN_unique_peaks.bed.gz
152.36 kB
STAR
demux_NNNNCATACNNN.bam
3.31 GB
demux_NNNNCATACNNN_unmapped.out.mate1.fastq.gz
138.47 MB
demux_NNNNCATACNNN.bam.bai
5.19 MB
demux_NNNNCATACNNN_SJ.out.tab
828.77 kB
demux_NNNNCATACNNN_stats.txt
1.82 kB
iCount summary
demux_NNNNAACTCNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNAACTCNNN_unique_summary.tsv_summary_gene.tsv
877.77 kB
demux_NNNNAACTCNNN_unique_summary.tsv_summary_subtype.tsv
643 B
STAR
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
3.95 MB
demux_NNNNATACGNNN.bam
62.05 MB
demux_NNNNATACGNNN_SJ.out.tab
19.97 kB
demux_NNNNATACGNNN.bam.bai
1.92 MB
demux_NNNNATACGNNN_stats.txt
1.80 kB
iCount clusters
Input_Naive Donor1_20180223_JU_grouped_clustered.bedgraph
41.71 kB
Input_Naive Donor1_20180223_JU_grouped_clustered.bed.gz
29.45 kB
iCount group
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped.bedgraph
3.34 MB
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped.bed.gz
833.42 kB
iCount clusters
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_clustered.bed.gz
146.58 kB
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_clustered.bedgraph
281.78 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
2.05 kB
STAR
demux_NNNNTTTAANNN.bam
220.40 MB
demux_NNNNTTTAANNN_stats.txt
1.80 kB
demux_NNNNTTTAANNN_SJ.out.tab
104.60 kB
demux_NNNNTTTAANNN.bam.bai
3.40 MB
demux_NNNNTTTAANNN_unmapped.out.mate1.fastq.gz
19.19 MB
STAR
demux_NNNNTGCGTNNN_unmapped.out.mate1.fastq.gz
24.27 MB
demux_NNNNTGCGTNNN.bam.bai
3.42 MB
demux_NNNNTGCGTNNN.bam
229.59 MB
demux_NNNNTGCGTNNN_stats.txt
1.80 kB
demux_NNNNTGCGTNNN_SJ.out.tab
114.50 kB
STAR
demux_NNNNGCTTGTTANNNNN.bam.bai
2.66 MB
demux_NNNNGCTTGTTANNNNN_unmapped.out.mate1.fastq.gz
19.89 MB
demux_NNNNGCTTGTTANNNNN.bam
141.71 MB
demux_NNNNGCTTGTTANNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGTTANNNNN_SJ.out.tab
48.27 kB
STAR
demux_NNNNGTTTCATTNNNNN_unmapped.out.mate1.fastq.gz
13.41 MB
demux_NNNNGTTTCATTNNNNN_stats.txt
1.80 kB
demux_NNNNGTTTCATTNNNNN_SJ.out.tab
90.42 kB
demux_NNNNGTTTCATTNNNNN.bam
133.91 MB
demux_NNNNGTTTCATTNNNNN.bam.bai
3.86 MB
STAR
demux_NNNNCATTTNNN.bam
153.29 MB
demux_NNNNCATTTNNN.bam.bai
2.92 MB
demux_NNNNCATTTNNN_unmapped.out.mate1.fastq.gz
13.95 MB
demux_NNNNCATTTNNN_stats.txt
1.80 kB
demux_NNNNCATTTNNN_SJ.out.tab
69.02 kB
STAR
demux_NNNNGCTTGTGCNNNNN.bam.bai
2.61 MB
demux_NNNNGCTTGTGCNNNNN_unmapped.out.mate1.fastq.gz
6.74 MB
demux_NNNNGCTTGTGCNNNNN.bam
125.67 MB
demux_NNNNGCTTGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGTGCNNNNN_SJ.out.tab
45.58 kB
iCount xlsites
demux_NNNNAGACTNNN_skipped.bam
329.88 kB
demux_NNNNAGACTNNN_unique.bedgraph
665.38 kB
demux_NNNNAGACTNNN_multi.bed.gz
1.16 MB
demux_NNNNAGACTNNN_unique.bed.gz
175.65 kB
STAR
demux_NNNNGTTTCTGCNNNNN_stats.txt
1.80 kB
demux_NNNNGTTTCTGCNNNNN.bam.bai
3.38 MB
demux_NNNNGTTTCTGCNNNNN_unmapped.out.mate1.fastq.gz
4.02 MB
demux_NNNNGTTTCTGCNNNNN.bam
112.01 MB
demux_NNNNGTTTCTGCNNNNN_SJ.out.tab
91.37 kB
STAR
demux_NNNNGTTTCTTANNNNN_unmapped.out.mate1.fastq.gz
16.95 MB
demux_NNNNGTTTCTTANNNNN.bam
125.89 MB
demux_NNNNGTTTCTTANNNNN.bam.bai
3.29 MB
demux_NNNNGTTTCTTANNNNN_stats.txt
1.80 kB
demux_NNNNGTTTCTTANNNNN_SJ.out.tab
82.23 kB
iCount xlsites
demux_NNNNGCTCTNNN_skipped.bam
526.91 kB
demux_NNNNGCTCTNNN_unique.bedgraph
957.96 kB
demux_NNNNGCTCTNNN_multi.bed.gz
1.55 MB
demux_NNNNGCTCTNNN_unique.bed.gz
251.86 kB
STAR
demux_NNNNGCTCTNNN_unmapped.out.mate1.fastq.gz
13.20 MB
demux_NNNNGCTCTNNN.bam.bai
3.10 MB
demux_NNNNGCTCTNNN_SJ.out.tab
93.27 kB
demux_NNNNGCTCTNNN.bam
185.66 MB
demux_NNNNGCTCTNNN_stats.txt
1.80 kB
iCount xlsites
demux_NNNNGTATTNNN_multi.bed.gz
2.40 MB
demux_NNNNGTATTNNN_skipped.bam
1.01 MB
demux_NNNNGTATTNNN_unique.bed.gz
403.61 kB
demux_NNNNGTATTNNN_unique.bedgraph
1.53 MB
STAR
demux_NNNNGTATTNNN.bam.bai
3.78 MB
demux_NNNNGTATTNNN_unmapped.out.mate1.fastq.gz
47.47 MB
demux_NNNNGTATTNNN.bam
316.07 MB
demux_NNNNGTATTNNN_stats.txt
1.80 kB
demux_NNNNGTATTNNN_SJ.out.tab
141.73 kB
Reads (single-end)
demux_NNNNGTTTCTTANNNNN.fastq.gz
26.09 MB
demux_NNNNGTTTCTTANNNNN_fastqc.zip
402.40 kB
iCount xlsites
demux_NNNNCTGTANNN_unique.bedgraph
1.05 MB
demux_NNNNCTGTANNN_skipped.bam
1.56 MB
demux_NNNNCTGTANNN_unique.bed.gz
284.88 kB
demux_NNNNCTGTANNN_multi.bed.gz
1.19 MB
Reads (single-end)
demux_NNNNCATTTNNN.fastq.gz
27.81 MB
demux_NNNNCATTTNNN_fastqc.zip
470.22 kB
Reads (single-end)
demux_NNNNGCTTGTGCNNNNN.fastq.gz
20.91 MB
demux_NNNNGCTTGTGCNNNNN_fastqc.zip
411.05 kB
Reads (single-end)
demux_NNNNGTTTCATTNNNNN.fastq.gz
24.22 MB
demux_NNNNGTTTCATTNNNNN_fastqc.zip
443.40 kB
Reads (single-end)
demux_NNNNTTTAANNN.fastq.gz
39.31 MB
demux_NNNNTTTAANNN_fastqc.zip
466.25 kB
Reads (single-end)
demux_NNNNCACAGAGGNNNNN.fastq.gz
9.52 MB
demux_NNNNCACAGAGGNNNNN_fastqc.zip
397.04 kB
Reads (single-end)
demux_NNNNCACAGCGTNNNNN.fastq.gz
17.16 MB
demux_NNNNCACAGCGTNNNNN_fastqc.zip
393.66 kB
iCount xlsites
demux_NNNNGATCGNNN_skipped.bam
3.28 MB
demux_NNNNGATCGNNN_multi.bed.gz
3.05 MB
demux_NNNNGATCGNNN_unique.bed.gz
769.87 kB
demux_NNNNGATCGNNN_unique.bedgraph
3.04 MB
iCount summary
demux_NNNNTCATCNNN_unique_summary.tsv_summary_type.tsv
271 B
demux_NNNNTCATCNNN_unique_summary.tsv_summary_gene.tsv
1000.07 kB
demux_NNNNTCATCNNN_unique_summary.tsv_summary_subtype.tsv
647 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
2.05 kB
STAR
demux_NNNNAGACTNNN.bam.bai
2.56 MB
demux_NNNNAGACTNNN_unmapped.out.mate1.fastq.gz
9.60 MB
demux_NNNNAGACTNNN.bam
148.09 MB
demux_NNNNAGACTNNN_stats.txt
1.80 kB
demux_NNNNAGACTNNN_SJ.out.tab
68.88 kB
Upload iCount sample annotation
L3modified_UN1801_PG_1-lane18.xlsx
13.94 kB
L3modified_UN1801_PG_1-lane18.tab.gz
1.82 kB
STAR
input-cd8-t-cells-rtonly-20190327-ju_trimmed_unmapped.out.mate1.fastq.gz
50.69 kB
input-cd8-t-cells-rtonly-20190327-ju_trimmed.bam.bai
3.41 kB
input-cd8-t-cells-rtonly-20190327-ju_trimmed.bam
94.02 kB
input-cd8-t-cells-rtonly-20190327-ju_trimmed_stats.txt
1.77 kB
input-cd8-t-cells-rtonly-20190327-ju_trimmed.bw
102.26 kB
input-cd8-t-cells-rtonly-20190327-ju_trimmed_SJ.out.tab
0 B
Upload iCount sample annotation
L3modified_UN1801_PG_1-lane18.xlsx
13.92 kB
L3modified_UN1801_PG_1-lane18.tab.gz
1.82 kB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped.bam
127.08 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped.bw
33.76 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped.bam.bai
4.10 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_SJ.out.tab
455.12 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
28.44 MB
iCount clusters
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_clustered.bedgraph
681.15 kB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_clustered.bed.gz
305.36 kB
iCount clusters
Input_R2HG Donors1&2&3_20180223_JU_grouped_clustered.bed.gz
78.61 kB
Input_R2HG Donors1&2&3_20180223_JU_grouped_clustered.bedgraph
118.64 kB
iCount clusters
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_clustered.bedgraph
181.82 kB
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_clustered.bed.gz
106.93 kB
iCount clusters
Input_S2HG Donors1&2&3_20180223_JU_grouped_clustered.bedgraph
96.25 kB
Input_S2HG Donors1&2&3_20180223_JU_grouped_clustered.bed.gz
64.35 kB
iCount group
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped.bed.gz
769.91 kB
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped.bedgraph
3.04 MB
iCount clusters
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_clustered.bed.gz
75.92 kB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_clustered.bedgraph
121.82 kB
iCount clusters
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_clustered.bed.gz
911.50 kB
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_clustered.bedgraph
2.27 MB
iCount group
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped.bed.gz
2.30 MB
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped.bedgraph
10.00 MB
STAR
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped.bam.bai
3.60 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped.bam
175.58 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_SJ.out.tab
973.72 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped.bw
26.81 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
21.18 MB
Cutadapt (single-end)
demux_NNNNGATCGNNN_trimmed_trimmed_fastqc.zip
481.03 kB
demux_NNNNGATCGNNN_trimmed_trimmed.fastq.gz
188.71 MB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
25.92 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam
129.05 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
STAR
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_SJ.out.tab
270.77 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped.bam.bai
4.46 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped.bam
54.28 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.44 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped.bw
37.13 kB
STAR
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped.bam.bai
4.47 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped.bw
45.54 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
7.28 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_SJ.out.tab
426.01 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped.bam
82.33 MB
iCount group
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped.bed.gz
761.50 kB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped.bedgraph
3.06 MB
Cutadapt (single-end)
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_fastqc.zip
534.37 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed.fastq.gz
19.53 MB
STAR
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
1.29 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped.bam
4.67 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped.bw
16.82 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_stats.txt
1.79 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped.bam.bai
1.84 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_SJ.out.tab
82.64 kB
Cutadapt (single-end)
demux_NNNNATACGNNN_trimmed_trimmed.fastq.gz
10.71 MB
demux_NNNNATACGNNN_trimmed_trimmed_fastqc.zip
507.06 kB
STAR
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped.bam
218.74 MB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped.bam.bai
3.68 MB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
45.95 MB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_SJ.out.tab
299.24 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped.bw
30.21 kB
FASTQ file (single-end)
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju.fastq.gz
90.88 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_fastqc.zip
455.50 kB
iCount clusters
m1A_Vehicle Donor1_20180223_JU_grouped_clustered.bed.gz
55.71 kB
m1A_Vehicle Donor1_20180223_JU_grouped_clustered.bedgraph
82.13 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam
130.75 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
27.87 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
STAR
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
14.51 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped.bam.bai
3.15 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_SJ.out.tab
953.22 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped.bw
24.35 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped.bam
124.63 MB
iCount summary
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
881 B
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
535.64 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
451 B
iCount annotate
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_annotated.bed.gz
1.10 MB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_annotated.bedgraph
3.06 MB
STAR
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped.bam.bai
3.53 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped.bw
34.62 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
16.89 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped.bam
219.54 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_SJ.out.tab
2.48 MB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
35.33 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam
149.05 MB
iCount group
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped.bed.gz
837.02 kB
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped.bedgraph
3.39 MB
iCount group
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped.bed.gz
2.03 MB
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped.bedgraph
8.69 MB
Cutadapt (single-end)
demux_NNNNGATCGNNN_trimmed_trimmed.fastq.gz
353.94 MB
demux_NNNNGATCGNNN_trimmed_trimmed_fastqc.zip
514.17 kB
iCount summary
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_subtype.tsv
646 B
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_gene.tsv
602.95 kB
Cutadapt (single-end)
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed.fastq.gz
21.71 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed_fastqc.zip
456.03 kB
iCount clusters
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_clustered.bed.gz
110.51 kB
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_clustered.bedgraph
183.68 kB
iCount clusters
Input_Vehicle Donors1&2&3_20180223_JU_grouped_clustered.bed.gz
59.73 kB
Input_Vehicle Donors1&2&3_20180223_JU_grouped_clustered.bedgraph
88.93 kB
Paraclu
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_peaks.bed.gz
17.96 kB
FASTQ file (single-end)
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_fastqc.zip
436.00 kB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju.fastq.gz
117.37 MB
iCount RNA-maps
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single.tar.gz
846.55 kB
K-mers
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.tar.gz
313.43 kB
FASTQ file (single-end)
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_fastqc.zip
441.83 kB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju.fastq.gz
60.18 MB
iCount RNA-maps
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single.tar.gz
676.28 kB
Paraclu
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_peaks.bed.gz
11.95 kB
K-mers
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.tar.gz
291.38 kB
FASTQ file (single-end)
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju.fastq.gz
59.26 MB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_fastqc.zip
435.26 kB
iCount RNA-maps
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single.tar.gz
647.39 kB
Paraclu
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_single_peaks.bed.gz
10.53 kB
K-mers
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.tar.gz
288.61 kB
FASTQ file (single-end)
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju.fastq.gz
103.32 MB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_fastqc.zip
438.19 kB
iCount RNA-maps
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single.tar.gz
769.80 kB
iCount summary
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_type.tsv
467 B
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_gene.tsv
1.39 MB
Paraclu
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_peaks.bed.gz
14.18 kB
FASTQ file (single-end)
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju.fastq.gz
111.68 MB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_fastqc.zip
433.66 kB
iCount RNA-maps
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single.tar.gz
926.26 kB
Paraclu
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_peaks.bed.gz
18.63 kB
K-mers
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-jufastqgz_unmapped.tar.gz
315.76 kB
iCount RNA-maps
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single.tar.gz
759.68 kB
FASTQ file (single-end)
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_fastqc.zip
443.32 kB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju.fastq.gz
84.52 MB
iCount summary
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_type.tsv
468 B
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_gene.tsv
1.31 MB
Paraclu
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_peaks.bed.gz
13.93 kB
iCount RNA-maps
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single.tar.gz
700.44 kB
K-mers
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped.tar.gz
296.28 kB
Paraclu
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_peaks.bed.gz
15.46 kB
iCount RNA-maps
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single.tar.gz
861.68 kB
K-mers
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-jufastqgz_unmapped.tar.gz
311.59 kB
iCount RNA-maps
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single.tar.gz
729.66 kB
Paraclu
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_peaks.bed.gz
13.94 kB
K-mers
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-jufastqgz_unmapped.tar.gz
299.09 kB
Cutadapt (single-end)
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed.fastq.gz
121.03 MB
Cutadapt (single-end)
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed.fastq.gz
62.04 MB
Cutadapt (single-end)
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed.fastq.gz
61.18 MB
Cutadapt (single-end)
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed.fastq.gz
106.87 MB
Cutadapt (single-end)
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed.fastq.gz
86.11 MB
Cutadapt (single-end)
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed.fastq.gz
87.33 MB
Cutadapt (single-end)
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed.fastq.gz
102.89 MB
Cutadapt (single-end)
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed.fastq.gz
88.73 MB
STAR
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed_SJ.out.tab
0 B
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed.bam
167.55 MB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
27.68 MB
STAR
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed.bam
87.62 MB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
17.06 MB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed_SJ.out.tab
0 B
iCount reads proxy
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.fastq.gz
17.06 MB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_fastqc.zip
475.61 kB
STAR
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
21.33 MB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed.bam
122.52 MB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
m62a-cd8-t-cells-xl-total-rna-20200123-ju.fastq.gz
44.88 MB
m62a-cd8-t-cells-xl-total-rna-20200123-ju_fastqc.zip
497.48 kB
FASTQ file (single-end)
m62a-cd8-t-cells-day5-donor1-20200123-ju.fastq.gz
335.66 MB
m62a-cd8-t-cells-day5-donor1-20200123-ju_fastqc.zip
486.15 kB
STAR
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
15.23 MB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed.bam
85.21 MB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed_SJ.out.tab
0 B
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed_stats.txt
1.78 kB
iCount reads proxy
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_fastqc.zip
457.24 kB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.fastq.gz
15.23 MB
STAR
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
23.82 MB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed.bam
143.02 MB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed_SJ.out.tab
0 B
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed.bam.bai
20.56 kB
iCount reads proxy
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_fastqc.zip
463.60 kB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped.fastq.gz
23.82 MB
iCount summary
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_subtype.tsv
644 B
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_gene.tsv
851.01 kB
STAR
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed.bam
159.50 MB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
29.86 MB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed_SJ.out.tab
0 B
STAR
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed.bam
116.28 MB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
22.32 MB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed_SJ.out.tab
0 B
iCount reads proxy
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped.fastq.gz
22.32 MB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_fastqc.zip
455.67 kB
STAR
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
23.75 MB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed.bam
139.64 MB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed_SJ.out.tab
0 B
iCount reads proxy
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped.fastq.gz
21.33 MB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_fastqc.zip
473.33 kB
iCount reads proxy
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-jufastqgz_unmapped.fastq.gz
23.75 MB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_fastqc.zip
461.64 kB
STAR
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed_unmapped.out.mate1.fastq.gz
24.75 MB
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed_SJ.out.tab
0 B
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed.bam
121.76 MB
iCount reads proxy
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_fastqc.zip
466.73 kB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.fastq.gz
27.68 MB
iCount xlsites
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed_single.bed.gz
99.37 kB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed_reads_single.bed.gz
100.34 kB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed_skipped.bam
3.93 kB
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed_single.bedgraph
262 B
input-cd8-t-cells-day1-donor2-totalrna-m62a-20200123-ju_trimmed_singleAndMulti.bed.gz
162.49 kB
iCount xlsites
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed_singleAndMulti.bed.gz
183.08 kB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed_single.bedgraph
262 B
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed_reads_single.bed.gz
113.50 kB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed_skipped.bam
3.93 kB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-ju_trimmed_single.bed.gz
112.14 kB
FASTQ file (single-end)
m62a-cd8-t-cells-naive-donor1-20200123-ju.fastq.gz
224.56 MB
m62a-cd8-t-cells-naive-donor1-20200123-ju_fastqc.zip
477.74 kB
FASTQ file (single-end)
m62a-cd8-t-cells-day1-donor3-20200123-ju.fastq.gz
131.24 MB
m62a-cd8-t-cells-day1-donor3-20200123-ju_fastqc.zip
473.05 kB
FASTQ file (single-end)
m62a-cd8-t-cells-day5-donor3-20200123-ju.fastq.gz
188.37 MB
m62a-cd8-t-cells-day5-donor3-20200123-ju_fastqc.zip
492.08 kB
iCount xlsites
m62a-cd8-t-cells-day5-donor3-20200123-ju_trimmed_single.bed.gz
75.55 kB
m62a-cd8-t-cells-day5-donor3-20200123-ju_trimmed_singleAndMulti.bed.gz
124.16 kB
m62a-cd8-t-cells-day5-donor3-20200123-ju_trimmed_reads_single.bed.gz
82.96 kB
m62a-cd8-t-cells-day5-donor3-20200123-ju_trimmed_skipped.bam
3.93 kB
m62a-cd8-t-cells-day5-donor3-20200123-ju_trimmed_single.bedgraph
228 B
iCount RNA-maps
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_single.tar.gz
497.96 kB
Paraclu
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_single_peaks.bed.gz
3.31 kB
iCount RNA-maps
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_single.tar.gz
503.09 kB
K-mers
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped.tar.gz
285.40 kB
Paraclu
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_single_peaks.bed.gz
3.58 kB
K-mers
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped.tar.gz
294.06 kB
FASTQ file (single-end)
m62a-cd8-t-cells-naive-donor3-20200123-ju.fastq.gz
130.47 MB
m62a-cd8-t-cells-naive-donor3-20200123-ju_fastqc.zip
457.85 kB
iCount reads proxy
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped.fastq.gz
32.93 MB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_fastqc.zip
497.48 kB
iCount RNA-maps
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_single.tar.gz
469.58 kB
Paraclu
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_single_peaks.bed.gz
3.42 kB
FASTQ file (single-end)
m62a-cd8-t-cells-day5-donor2-20200123-ju.fastq.gz
267.64 MB
m62a-cd8-t-cells-day5-donor2-20200123-ju_fastqc.zip
453.48 kB
K-mers
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped.tar.gz
297.61 kB
FASTQ file (single-end)
m62a-cd8-t-cells-day1-donor2-20200123-ju.fastq.gz
132.28 MB
m62a-cd8-t-cells-day1-donor2-20200123-ju_fastqc.zip
484.84 kB
iCount reads proxy
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped.fastq.gz
38.40 MB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_fastqc.zip
505.49 kB
Paraclu
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_single_peaks.bed.gz
3.22 kB
iCount RNA-maps
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_single.tar.gz
476.80 kB
K-mers
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped.tar.gz
276.06 kB
FASTQ file (single-end)
m62a-cd8-t-cells-naive-donor2-20200123-ju.fastq.gz
113.36 MB
m62a-cd8-t-cells-naive-donor2-20200123-ju_fastqc.zip
487.13 kB
iCount RNA-maps
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_single.tar.gz
461.84 kB
Paraclu
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_single_peaks.bed.gz
2.61 kB
K-mers
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped.tar.gz
270.04 kB
Paraclu
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_single_peaks.bed.gz
6.18 kB
iCount reads proxy
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped.fastq.gz
80.23 MB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_fastqc.zip
531.83 kB
iCount RNA-maps
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_single.tar.gz
525.15 kB
FASTQ file (single-end)
m62a-cd8-t-cells-day1-donor1-20200123-ju_fastqc.zip
482.39 kB
m62a-cd8-t-cells-day1-donor1-20200123-ju.fastq.gz
311.16 MB
iCount RNA-maps
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_single.tar.gz
496.64 kB
iCount summary
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_single_summary_type.tsv
474 B
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_single_summary_gene.tsv
968.11 kB
iCount RNA-maps
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_single.tar.gz
560.02 kB
iCount reads proxy
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped.fastq.gz
63.88 MB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_fastqc.zip
508.58 kB
Paraclu
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_single_peaks.bed.gz
6.15 kB
K-mers
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped.tar.gz
310.63 kB
Cutadapt (single-end)
m62a-cd8-t-cells-xl-total-rna-20200123-ju_trimmed.fastq.gz
41.20 MB
K-mers
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped.tar.gz
232.64 kB
K-mers
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped.tar.gz
198.97 kB
iCount xlsites
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed_skipped.bam
3.93 kB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed_singleAndMulti.bed.gz
158.55 kB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed_single.bed.gz
95.90 kB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed_reads_single.bed.gz
96.81 kB
input-cd8-t-cells-naive-donor2-totalrna-m62a-20200123-ju_trimmed_single.bedgraph
264 B
iCount xlsites
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed_single.bed.gz
104.56 kB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed_skipped.bam
3.93 kB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed_reads_single.bed.gz
105.67 kB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed_singleAndMulti.bed.gz
168.15 kB
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-ju_trimmed_single.bedgraph
262 B
iCount reads proxy
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-jufastqgz_unmapped.fastq.gz
29.86 MB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_fastqc.zip
463.63 kB
iCount xlsites
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed_single.bed.gz
108.68 kB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed_singleAndMulti.bed.gz
175.10 kB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed_skipped.bam
3.93 kB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed_single.bedgraph
262 B
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-ju_trimmed_reads_single.bed.gz
109.84 kB
iCount xlsites
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed_single.bed.gz
97.01 kB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed_skipped.bam
3.93 kB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed_singleAndMulti.bed.gz
159.09 kB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed_single.bedgraph
264 B
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-ju_trimmed_reads_single.bed.gz
98.06 kB
iCount xlsites
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed_single.bed.gz
102.19 kB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed_skipped.bam
3.93 kB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed_reads_single.bed.gz
103.49 kB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed_singleAndMulti.bed.gz
166.22 kB
input-cd8-t-cells-day5-donor1-totalrna-m62a-20200123-ju_trimmed_single.bedgraph
262 B
iCount xlsites
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed_reads_single.bed.gz
107.04 kB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed_singleAndMulti.bed.gz
169.49 kB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed_skipped.bam
3.93 kB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed_single.bedgraph
262 B
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-ju_trimmed_single.bed.gz
105.84 kB
iCount reads proxy
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-jufastqgz_unmapped.fastq.gz
24.75 MB
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_fastqc.zip
453.72 kB
iCount xlsites
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed_single.bed.gz
99.30 kB
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed_skipped.bam
3.93 kB
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed_single.bedgraph
264 B
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed_singleAndMulti.bed.gz
164.23 kB
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-ju_trimmed_reads_single.bed.gz
100.35 kB
STAR
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.bam
76.85 MB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.bam.bai
4.28 MB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
7.30 MB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped_SJ.out.tab
536.94 kB
input-cd8-t-cells-day5-donor2-totalrna-m62a-20200123-jufastqgz_unmapped.bw
39.83 kB
Cutadapt (single-end)
m62a-cd8-t-cells-day1-donor3-20200123-ju_trimmed.fastq.gz
131.15 MB
Cutadapt (single-end)
m62a-cd8-t-cells-naive-donor3-20200123-ju_trimmed.fastq.gz
134.24 MB
Cutadapt (single-end)
m62a-cd8-t-cells-day5-donor3-20200123-ju_trimmed.fastq.gz
187.46 MB
Cutadapt (single-end)
m62a-cd8-t-cells-day1-donor2-20200123-ju_trimmed.fastq.gz
132.45 MB
Cutadapt (single-end)
m62a-cd8-t-cells-naive-donor2-20200123-ju_trimmed.fastq.gz
112.12 MB
Cutadapt (single-end)
m62a-cd8-t-cells-day5-donor2-20200123-ju_trimmed.fastq.gz
274.60 MB
Cutadapt (single-end)
m62a-cd8-t-cells-naive-donor1-20200123-ju_trimmed.fastq.gz
223.44 MB
Cutadapt (single-end)
m62a-cd8-t-cells-day5-donor1-20200123-ju_trimmed.fastq.gz
327.12 MB
Cutadapt (single-end)
m62a-cd8-t-cells-day1-donor1-20200123-ju_trimmed.fastq.gz
310.13 MB
STAR
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4.27 MB
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STAR
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STAR
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STAR
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iCount xlsites
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STAR
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STAR
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iCount xlsites
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STAR
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STAR
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STAR
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STAR
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STAR
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0 B
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STAR
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iCount xlsites
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iCount xlsites
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iCount xlsites
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iCount xlsites
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iCount xlsites
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4.13 MB
iCount reads proxy
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34.50 MB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_fastqc.zip
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iCount xlsites
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iCount xlsites
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iCount reads proxy
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m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped.fastq.gz
34.39 MB
iCount xlsites
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76.61 kB
iCount reads proxy
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65.77 MB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_fastqc.zip
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iCount xlsites
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m62a-cd8-t-cells-naive-donor2-20200123-ju_trimmed_single.bedgraph
230 B
iCount xlsites
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iCount reads proxy
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33.45 MB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_fastqc.zip
506.01 kB
iCount xlsites
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83.92 kB
m62a-cd8-t-cells-day5-donor2-20200123-ju_trimmed_single.bedgraph
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iCount xlsites
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78.27 kB
iCount reads proxy
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81.99 MB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_fastqc.zip
492.29 kB
iCount xlsites
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m62a-cd8-t-cells-day1-donor1-20200123-ju_trimmed_single.bedgraph
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iCount xlsites
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154.94 kB
m62a-cd8-t-cells-day5-donor1-20200123-ju_trimmed_skipped.bam
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m62a-cd8-t-cells-day5-donor1-20200123-ju_trimmed_single.bedgraph
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m62a-cd8-t-cells-day5-donor1-20200123-ju_trimmed_single.bed.gz
87.68 kB
iCount summary
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1.01 kB
input-cd8-t-cells-naive-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_gene.tsv
1.40 MB
iCount summary
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_type.tsv
477 B
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
input-cd8-t-cells-day1-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_gene.tsv
1.52 MB
iCount summary
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_gene.tsv
1.41 MB
input-cd8-t-cells-naive-donor3-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_type.tsv
468 B
iCount summary
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_type.tsv
471 B
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_gene.tsv
1.40 MB
input-cd8-t-cells-day1-donor1-totalrna-m62a-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
STAR
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped.bam.bai
2.42 MB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped.bam
57.75 MB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
17.33 MB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_stats.txt
1.81 kB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped.bw
22.89 kB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_SJ.out.tab
142.97 kB
STAR
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
28.96 MB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped.bam.bai
2.39 MB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_stats.txt
1.81 kB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped.bam
86.50 MB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_SJ.out.tab
143.20 kB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped.bw
23.66 kB
STAR
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
13.86 MB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped.bam
56.19 MB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped.bam.bai
2.29 MB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_stats.txt
1.80 kB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_SJ.out.tab
115.73 kB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped.bw
22.67 kB
STAR
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
18.85 MB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped.bam
65.84 MB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_stats.txt
1.81 kB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped.bam.bai
2.45 MB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_SJ.out.tab
105.31 kB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped.bw
23.06 kB
STAR
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
27.14 MB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped.bam.bai
2.75 MB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped.bam
122.22 MB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_stats.txt
1.81 kB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped.bw
25.50 kB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_SJ.out.tab
196.22 kB
STAR
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped.bam
35.25 MB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped.bam.bai
2.19 MB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
15.58 MB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_stats.txt
1.80 kB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_SJ.out.tab
160.64 kB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped.bw
19.42 kB
STAR
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
38.48 MB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped.bam.bai
3.06 MB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_SJ.out.tab
214.67 kB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_stats.txt
1.81 kB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped.bam
146.55 MB
STAR
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped.bam.bai
3.25 MB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
39.38 MB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_stats.txt
1.81 kB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped.bam
147.41 MB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped.bw
26.83 kB
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_SJ.out.tab
252.26 kB
K-mers
input-cd8-t-cells-day5-donor3-totalrna-m62a-20200123-jufastqgz_unmapped.tar.gz
304.50 kB
iCount xlsites
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
785.62 kB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_single.bed.gz
230.33 kB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_skipped.bam
2.90 kB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_reads_single.bed.gz
259.52 kB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_single.bedgraph
889.67 kB
iCount xlsites
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_skipped.bam
3.12 kB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_single.bed.gz
222.45 kB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_single.bedgraph
843.38 kB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_reads_single.bed.gz
248.89 kB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
698.96 kB
iCount xlsites
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_reads_single.bed.gz
284.51 kB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
838.04 kB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_single.bed.gz
254.13 kB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_single.bedgraph
976.37 kB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_skipped.bam
2.90 kB
iCount xlsites
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
1.38 MB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_skipped.bam
3.25 kB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_reads_single.bed.gz
425.49 kB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_single.bed.gz
380.62 kB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_single.bedgraph
1.43 MB
Paraclu
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped_single_peaks.bed.gz
6.90 kB
iCount xlsites
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_single.bed.gz
174.28 kB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
451.10 kB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_single.bedgraph
678.17 kB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_skipped.bam
2.90 kB
m6a-cd8-t-cells-igg-total-rna-20200123-jufastqgz_unmapped_reads_single.bed.gz
190.80 kB
iCount xlsites
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_reads_single.bed.gz
414.56 kB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_single.bed.gz
365.58 kB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_skipped.bam
3.29 kB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
1.15 MB
m62a-cd8-t-cells-day5-donor2-20200123-jufastqgz_unmapped_single.bedgraph
1.39 MB
iCount xlsites
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_single.bed.gz
195.97 kB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_singleAndMulti.bed.gz
474.68 kB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_reads_single.bed.gz
226.21 kB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_skipped.bam
3.16 kB
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_single.bedgraph
748.91 kB
iCount summary
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_single_summary_type.tsv
464 B
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_single_summary_gene.tsv
667.65 kB
m62a-cd8-t-cells-naive-donor3-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.00 kB
iCount summary
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_single_summary_type.tsv
466 B
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.00 kB
m62a-cd8-t-cells-day5-donor3-20200123-jufastqgz_unmapped_single_summary_gene.tsv
743.32 kB
iCount summary
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_single_summary_gene.tsv
726.36 kB
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_single_summary_type.tsv
467 B
m62a-cd8-t-cells-day1-donor2-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.00 kB
iCount summary
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_single_summary_type.tsv
470 B
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.00 kB
m62a-cd8-t-cells-day1-donor3-20200123-jufastqgz_unmapped_single_summary_gene.tsv
684.10 kB
iCount summary
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_single_summary_type.tsv
459 B
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1018 B
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_single_summary_gene.tsv
676.77 kB
Paraclu
m62a-cd8-t-cells-xl-total-rna-20200123-jufastqgz_unmapped_single_peaks.bed.gz
1.28 kB
iCount RNA-maps
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_single.tar.gz
510.54 kB
STAR
demux_NNNNCACAGGGANNNNN_stats.txt
1.80 kB
demux_NNNNCACAGGGANNNNN.bam.bai
3.52 MB
demux_NNNNCACAGGGANNNNN_unmapped.out.mate1.fastq.gz
5.19 MB
demux_NNNNCACAGGGANNNNN_SJ.out.tab
135.51 kB
demux_NNNNCACAGGGANNNNN.bam
186.46 MB
K-mers
m62a-cd8-t-cells-day1-donor1-20200123-jufastqgz_unmapped.tar.gz
314.46 kB
iCount summary
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_single_summary_type.tsv
460 B
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_single_summary_gene.tsv
595.61 kB
m62a-cd8-t-cells-naive-donor2-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.00 kB
iCount summary
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_single_summary_gene.tsv
880.57 kB
m62a-cd8-t-cells-naive-donor1-20200123-jufastqgz_unmapped_single_summary_type.tsv
468 B
iCount summary
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_single_summary_type.tsv
471 B
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped_single_summary_gene.tsv
879.60 kB
K-mers
m62a-cd8-t-cells-day5-donor1-20200123-jufastqgz_unmapped.tar.gz
311.34 kB
iCount clusters
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_clustered.bed.gz
104.25 kB
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_clustered.bedgraph
174.12 kB
iCount clusters
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_clustered.bedgraph
906.49 kB
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_clustered.bed.gz
362.26 kB
Reads (single-end)
demux_NNNNTCATCNNN.fastq.gz
335.70 MB
demux_NNNNTCATCNNN_fastqc.zip
479.40 kB
iCount xlsites
demux_NNNNTCGAGNNN_skipped.bam
8.31 MB
demux_NNNNTCGAGNNN_unique.bed.gz
1.01 MB
demux_NNNNTCGAGNNN_unique.bedgraph
4.20 MB
demux_NNNNTCGAGNNN_multi.bed.gz
3.82 MB
iCount xlsites
demux_NNNNCCTGCNNN_skipped.bam
3.51 MB
demux_NNNNCCTGCNNN_multi.bed.gz
2.82 MB
demux_NNNNCCTGCNNN_unique.bed.gz
761.46 kB
demux_NNNNCCTGCNNN_unique.bedgraph
3.06 MB
STAR
demux_NNNNGTTTCNNN_unmapped.out.mate1.fastq.gz
104.83 MB
demux_NNNNGTTTCNNN_stats.txt
1.81 kB
demux_NNNNGTTTCNNN.bam
2.68 GB
demux_NNNNGTTTCNNN_SJ.out.tab
458.76 kB
demux_NNNNGTTTCNNN.bam.bai
5.03 MB
Reads (single-end)
demux_NNNNCAGGGNNN_fastqc.zip
536.27 kB
demux_NNNNCAGGGNNN.fastq.gz
390.04 MB
Reads (single-end)
GAM660A1-A37_S1_L001_R1_001.fastq.gz
16.66 GB
GAM660A1-A37_S1_L001_R1_001_fastqc.zip
469.98 kB
Reads (single-end)
demux_NNNNATCTGAGGNNNNN.fastq.gz
29.17 MB
demux_NNNNATCTGAGGNNNNN_fastqc.zip
403.00 kB
STAR
demux_NNNNGTAGANNN_unmapped.out.mate1.fastq.gz
37.31 MB
demux_NNNNGTAGANNN_stats.txt
1.81 kB
demux_NNNNGTAGANNN.bam.bai
4.44 MB
demux_NNNNGTAGANNN.bam
233.69 MB
demux_NNNNGTAGANNN_SJ.out.tab
156.43 kB
iCount xlsites
demux_NNNNTCGAGATTNNNNN_skipped.bam
452.95 kB
demux_NNNNTCGAGATTNNNNN_unique.bed.gz
370.93 kB
demux_NNNNTCGAGATTNNNNN_multi.bed.gz
2.45 MB
demux_NNNNTCGAGATTNNNNN_unique.bedgraph
1.39 MB
STAR
demux_NNNNGATCGNNN.bam
1.28 GB
demux_NNNNGATCGNNN_unmapped.out.mate1.fastq.gz
52.97 MB
demux_NNNNGATCGNNN.bam.bai
4.40 MB
demux_NNNNGATCGNNN_stats.txt
1.81 kB
demux_NNNNGATCGNNN_SJ.out.tab
194.01 kB
STAR
demux_NNNNTCGAGGTCNNNNN_unmapped.out.mate1.fastq.gz
9.91 MB
demux_NNNNTCGAGGTCNNNNN.bam.bai
4.02 MB
demux_NNNNTCGAGGTCNNNNN.bam
323.31 MB
demux_NNNNTCGAGGTCNNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGGTCNNNNN_SJ.out.tab
187.27 kB
STAR
demux_NNNNCACAGNNN.bam.bai
4.90 MB
demux_NNNNCACAGNNN_unmapped.out.mate1.fastq.gz
121.43 MB
demux_NNNNCACAGNNN_stats.txt
1.81 kB
demux_NNNNCACAGNNN.bam
2.83 GB
demux_NNNNCACAGNNN_SJ.out.tab
353.74 kB
Reads (single-end)
demux_NNNNGTATTNNN.fastq.gz
73.09 MB
demux_NNNNGTATTNNN_fastqc.zip
532.43 kB
iCount summary
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_subtype.tsv
642 B
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_gene.tsv
962.83 kB
iCount reads proxy
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped.fastq.gz
55.88 MB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_fastqc.zip
491.42 kB
Reads (single-end)
demux_NNNNCATACNNN.fastq.gz
466.67 MB
demux_NNNNCATACNNN_fastqc.zip
451.46 kB
Reads (single-end)
demux_NNNNCACAGNNN.fastq.gz
398.08 MB
demux_NNNNCACAGNNN_fastqc.zip
482.80 kB
Reads (single-end)
demux_NNNNCACAGGGANNNNN.fastq.gz
21.86 MB
demux_NNNNCACAGGGANNNNN_fastqc.zip
390.15 kB
Reads (single-end)
demux_NNNNTCGCCNNN.fastq.gz
262.37 MB
demux_NNNNTCGCCNNN_fastqc.zip
455.39 kB
Reads (single-end)
demux_NNNNTCCACNNN.fastq.gz
71.12 MB
demux_NNNNTCCACNNN_fastqc.zip
465.01 kB
STAR
demux_NNNNAGTCCNNN.bam.bai
4.70 MB
demux_NNNNAGTCCNNN.bam
1.94 GB
demux_NNNNAGTCCNNN_stats.txt
1.81 kB
demux_NNNNAGTCCNNN_SJ.out.tab
528.80 kB
demux_NNNNAGTCCNNN_unmapped.out.mate1.fastq.gz
72.14 MB
Reads (single-end)
demux_NNNNTGTGGNNN.fastq.gz
302.78 MB
demux_NNNNTGTGGNNN_fastqc.zip
467.15 kB
Reads (single-end)
demux_NNNNTCGAGCTGNNNNN.fastq.gz
25.78 MB
demux_NNNNTCGAGCTGNNNNN_fastqc.zip
397.95 kB
Reads (single-end)
demux_NNNNGTTTCTGCNNNNN.fastq.gz
14.06 MB
demux_NNNNGTTTCTGCNNNNN_fastqc.zip
406.79 kB
Reads (single-end)
demux_NNNNGGAGCNNN_fastqc.zip
432.90 kB
demux_NNNNGGAGCNNN.fastq.gz
337.97 MB
Reads (single-end)
demux_NNNNGTTTCNNN.fastq.gz
389.29 MB
demux_NNNNGTTTCNNN_fastqc.zip
462.64 kB
Reads (single-end)
demux_NNNNATACGNNN.fastq.gz
11.65 MB
demux_NNNNATACGNNN_fastqc.zip
445.32 kB
Reads (single-end)
demux_NNNNAGTCCNNN.fastq.gz
265.03 MB
demux_NNNNAGTCCNNN_fastqc.zip
479.62 kB
iCount group
m1A_Donor1_ALL-3samples_20180223_JU_grouped.bedgraph
3.77 MB
m1A_Donor1_ALL-3samples_20180223_JU_grouped.bed.gz
977.91 kB
iCount summary
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
546.70 kB
Cutadapt (single-end)
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed.fastq.gz
17.58 MB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed_fastqc.zip
461.98 kB
iCount clusters
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_clustered.bedgraph
1.18 MB
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_clustered.bed.gz
466.35 kB
iCount xlsites
demux_NNNNTCATCNNN_unique.bed.gz
1.15 MB
demux_NNNNTCATCNNN_skipped.bam
5.67 MB
demux_NNNNTCATCNNN_multi.bed.gz
4.22 MB
demux_NNNNTCATCNNN_unique.bedgraph
4.82 MB
Upload iCount sample annotation
m6A_CD8_20180420_JU_iclip_annotation.tab.gz
897 B
m6A_CD8_20180420_JU_iclip_annotation.xlsx
19.20 kB
Reads (single-end)
demux_NNNNCACAGTGCNNNNN_fastqc.zip
393.97 kB
demux_NNNNCACAGTGCNNNNN.fastq.gz
12.84 MB
STAR
demux_NNNNATCTGAGGNNNNN_unmapped.out.mate1.fastq.gz
9.01 MB
demux_NNNNATCTGAGGNNNNN.bam
179.74 MB
demux_NNNNATCTGAGGNNNNN.bam.bai
3.03 MB
demux_NNNNATCTGAGGNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGAGGNNNNN_SJ.out.tab
71.96 kB
Reads (single-end)
demux_NNNNGATCGNNN.fastq.gz
363.28 MB
demux_NNNNGATCGNNN_fastqc.zip
486.02 kB
STAR
demux_NNNNTGTGGNNN.bam.bai
3.39 MB
demux_NNNNTGTGGNNN_unmapped.out.mate1.fastq.gz
117.02 MB
demux_NNNNTGTGGNNN.bam
1.47 GB
demux_NNNNTGTGGNNN_stats.txt
1.81 kB
demux_NNNNTGTGGNNN_SJ.out.tab
178.79 kB
STAR
demux_NNNNTCGAGCTGNNNNN.bam.bai
3.77 MB
demux_NNNNTCGAGCTGNNNNN_unmapped.out.mate1.fastq.gz
6.68 MB
demux_NNNNTCGAGCTGNNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGCTGNNNNN.bam
213.99 MB
demux_NNNNTCGAGCTGNNNNN_SJ.out.tab
138.58 kB
STAR
demux_NNNNGCTTGAGGNNNNN_unmapped.out.mate1.fastq.gz
6.87 MB
demux_NNNNGCTTGAGGNNNNN.bam.bai
2.71 MB
demux_NNNNGCTTGAGGNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGAGGNNNNN.bam
126.64 MB
demux_NNNNGCTTGAGGNNNNN_SJ.out.tab
50.64 kB
Reads (single-end)
demux_NNNNAGGCANNN.fastq.gz
106.78 MB
demux_NNNNAGGCANNN_fastqc.zip
478.65 kB
Reads (single-end)
demux_NNNNGTTTCAGGNNNNN.fastq.gz
21.20 MB
demux_NNNNGTTTCAGGNNNNN_fastqc.zip
402.47 kB
Reads (single-end)
demux_NNNNTGCGTNNN.fastq.gz
44.28 MB
demux_NNNNTGCGTNNN_fastqc.zip
497.73 kB
iCount group
m1A_R2HG Donor1_20180223_JU_grouped.bedgraph
1.74 MB
m1A_R2HG Donor1_20180223_JU_grouped.bed.gz
465.09 kB
iCount group
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped.bed.gz
4.63 MB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped.bedgraph
20.55 MB
iCount group
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped.bed.gz
659.67 kB
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped.bedgraph
2.63 MB
STAR
demux_NNNNTCATCNNN_trimmed_trimmed.bam.bai
4.69 MB
demux_NNNNTCATCNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNTCATCNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
76.07 MB
demux_NNNNTCATCNNN_trimmed_trimmed_SJ.out.tab
433.17 kB
demux_NNNNTCATCNNN_trimmed_trimmed.bam
2.37 GB
iCount group
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_grouped_cdna.bed.gz
3.16 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_grouped_reads.bed.gz
3.66 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_grouped_cdna.bedgraph
15.03 MB
iCount group
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_grouped_cdna.bed.gz
4.74 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_grouped_reads.bed.gz
5.06 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_grouped_cdna.bedgraph
23.01 MB
STAR
demux_NNNNCACAGTGCNNNNN.bam.bai
3.18 MB
demux_NNNNCACAGTGCNNNNN_unmapped.out.mate1.fastq.gz
3.26 MB
demux_NNNNCACAGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNCACAGTGCNNNNN.bam
107.39 MB
demux_NNNNCACAGTGCNNNNN_SJ.out.tab
91.22 kB
iCount annotate
Input_S2HG Donors1&2&3_20180223_JU_grouped_annotated.bedgraph
3.50 MB
Input_S2HG Donors1&2&3_20180223_JU_grouped_annotated.bed.gz
1.24 MB
iCount annotate
Input_R2HG Donors1&2&3_20180223_JU_grouped_annotated.bedgraph
4.42 MB
Input_R2HG Donors1&2&3_20180223_JU_grouped_annotated.bed.gz
1.54 MB
Cutadapt (single-end)
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_fastqc.zip
502.22 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed.fastq.gz
14.27 MB
iCount reads proxy
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped.fastq.gz
125.96 MB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_fastqc.zip
503.33 kB
iCount reads proxy
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_fastqc.zip
482.84 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped.fastq.gz
72.90 MB
STAR
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped.bam.bai
3.33 MB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
25.57 MB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped.bam
142.60 MB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped.bw
26.53 kB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_SJ.out.tab
211.53 kB
Cutadapt (single-end)
demux_NNNNGTTTCTTANNNNN_trimmed_fastqc.zip
415.08 kB
demux_NNNNGTTTCTTANNNNN_trimmed.fastq.gz
14.27 MB
iCount xlsites
demux_NNNNTGTGGNNN_trimmed_singleAndMulti.bed.gz
1.99 MB
demux_NNNNTGTGGNNN_trimmed_single.bed.gz
390.06 kB
demux_NNNNTGTGGNNN_trimmed_skipped.bam
5.28 kB
demux_NNNNTGTGGNNN_trimmed_single.bedgraph
1.46 MB
Cutadapt (single-end)
demux_NNNNCACAGNNN_trimmed.fastq.gz
385.68 MB
demux_NNNNCACAGNNN_trimmed_fastqc.zip
462.75 kB
iCount peaks
Input_Vehicle Donors1&2&3_20180223_JU_grouped_peaks.bedgraph
213.88 kB
Input_Vehicle Donors1&2&3_20180223_JU_grouped_scores.tsv.gz
970.19 kB
Input_Vehicle Donors1&2&3_20180223_JU_grouped_peaks.bed.gz
91.91 kB
Cutadapt (single-end)
demux_NNNNGGAGCNNN_trimmed.fastq.gz
327.15 MB
demux_NNNNGGAGCNNN_trimmed_fastqc.zip
447.52 kB
Cutadapt (single-end)
demux_NNNNCAGGGNNN_trimmed_trimmed_fastqc.zip
526.81 kB
demux_NNNNCAGGGNNN_trimmed_trimmed.fastq.gz
377.61 MB
FASTQ file (single-end)
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju.fastq.gz
336.34 MB
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_fastqc.zip
520.30 kB
iCount reads proxy
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped.fastq.gz
54.76 MB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_fastqc.zip
503.39 kB
iCount summary
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_type.tsv
267 B
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_subtype.tsv
641 B
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_gene.tsv
813.65 kB
STAR
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam
135.47 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
85.75 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bw
106.26 kB
iCount annotate
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_annotated.bedgraph
4.83 MB
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_annotated.bed.gz
1.66 MB
iCount group
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped.bedgraph
4.21 MB
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped.bed.gz
1.01 MB
iCount group
Input_Naive Donor1_20180223_JU_grouped.bed.gz
383.13 kB
Input_Naive Donor1_20180223_JU_grouped.bedgraph
1.44 MB
STAR
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
54.76 MB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed.bam
309.51 MB
Cutadapt (single-end)
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed.fastq.gz
193.74 MB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed_fastqc.zip
480.83 kB
iCount reads proxy
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped.fastq.gz
66.99 MB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_fastqc.zip
543.73 kB
iCount xlsites
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed_singleAndMulti.bed.gz
119.81 kB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed_single.bedgraph
246 B
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed_single.bed.gz
66.05 kB
Cutadapt (single-end)
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed.fastq.gz
256.52 MB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed_fastqc.zip
482.21 kB
FASTQ file (single-end)
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju.fastq.gz
262.34 MB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_fastqc.zip
533.89 kB
iCount summary
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
642 B
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_single_summary_type.tsv
268 B
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_single_summary_gene.tsv
934.92 kB
STAR
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped.bam.bai
4.61 MB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped.bam
273.22 MB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_SJ.out.tab
404.25 kB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped.bw
43.76 kB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
38.18 MB
iCount xlsites
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed_single.bed.gz
73.89 kB
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed_singleAndMulti.bed.gz
133.78 kB
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed_single.bedgraph
234 B
Cutadapt (single-end)
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed.fastq.gz
378.68 MB
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed_fastqc.zip
484.05 kB
iCount summary
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
643 B
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_single_summary_type.tsv
269 B
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_single_summary_gene.tsv
893.10 kB
iCount reads proxy
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped.fastq.gz
119.54 MB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_fastqc.zip
487.96 kB
iCount xlsites
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed_single.bed.gz
76.59 kB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed_singleAndMulti.bed.gz
145.65 kB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed_single.bedgraph
240 B
Cutadapt (single-end)
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed.fastq.gz
447.35 MB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed_fastqc.zip
471.03 kB
Cutadapt (single-end)
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed_fastqc.zip
475.94 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed.fastq.gz
387.41 MB
STAR
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
54.02 MB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped.bam.bai
4.31 MB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped.bam
321.13 MB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_SJ.out.tab
733.48 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped.bw
48.12 kB
iCount xlsites
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed_single.bed.gz
90.62 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed_singleAndMulti.bed.gz
167.29 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed_single.bedgraph
240 B
iCount xlsites
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed_single.bed.gz
67.28 kB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed_single.bedgraph
240 B
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed_singleAndMulti.bed.gz
119.91 kB
iCount summary
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
649 B
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_single_summary_type.tsv
269 B
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_single_summary_gene.tsv
1.04 MB
iCount xlsites
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed_singleAndMulti.bed.gz
132.19 kB
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed_single.bed.gz
73.89 kB
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed_single.bedgraph
234 B
Cutadapt (single-end)
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed.fastq.gz
221.65 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_fastqc.zip
485.04 kB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_skipped.bam
4.45 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single.bedgraph
12.47 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single.bed.gz
2.75 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_singleAndMulti.bed.gz
6.83 MB
Cutadapt (single-end)
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed.fastq.gz
213.45 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_fastqc.zip
500.28 kB
STAR
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
29.08 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped.bam
150.60 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped.bam.bai
4.18 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_SJ.out.tab
664.41 kB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped.bw
42.97 kB
FASTQ file (single-end)
m6a-cd8-t-cells-xl-polya-20190312-ju.fastq.gz
592.90 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_fastqc.zip
424.21 kB
iCount summary
demux_NNNNTGTGGNNN_trimmed_trimmed_single_summary_type.tsv
268 B
demux_NNNNTGTGGNNN_trimmed_trimmed_single_summary_gene.tsv
588.92 kB
demux_NNNNTGTGGNNN_trimmed_trimmed_single_summary_subtype.tsv
646 B
iCount group
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped.bed.gz
5.13 MB
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped.bedgraph
24.53 MB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
2.05 kB
iCount summary
demux_NNNNCATACNNN_unique_summary.tsv_summary_type.tsv
272 B
demux_NNNNCATACNNN_unique_summary.tsv_summary_gene.tsv
1.15 MB
demux_NNNNCATACNNN_unique_summary.tsv_summary_subtype.tsv
650 B
STAR
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
77.89 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam.bai
17.96 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam
111.54 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bw
104.36 kB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam
264.52 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
56.98 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
Reads (single-end)
demux_NNNNGTAGANNN.fastq.gz
90.51 MB
demux_NNNNGTAGANNN_fastqc.zip
487.21 kB
iCount group
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped.bedgraph
3.06 MB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped.bed.gz
761.50 kB
iCount group
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped.bed.gz
4.91 MB
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped.bedgraph
22.96 MB
STAR
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
555.44 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam
769.42 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bw
105.35 kB
K-mers
intron region.png
120.39 kB
kmer_frequency_genome.tsv
4.38 kB
positional_distribution_intron.tsv
64.74 kB
kmer_frequency_intron.tsv
916 B
other_exon region.png
180.05 kB
positional_distribution_genome.tsv
144.00 kB
utr3 region.png
137.74 kB
genome region.png
191.55 kB
kmer_frequency_utr3.tsv
1.16 kB
positional_distribution_utr3.tsv
66.20 kB
kmer_frequency_other_exon.tsv
3.01 kB
positional_distribution_other_exon.tsv
118.11 kB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
124.76 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bed.gz
66.46 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bedgraph
222 B
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_reads_single.bed.gz
69.24 kB
STAR
demux_NNNNTCCACNNN_SJ.out.tab
53.84 kB
demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz
30.13 MB
demux_NNNNTCCACNNN_stats.txt
1.80 kB
demux_NNNNTCCACNNN.bam.bai
2.76 MB
demux_NNNNTCCACNNN.bam
385.09 MB
iCount summary
demux_NNNNCACAGGGANNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNCACAGGGANNNNN_unique_summary.tsv_summary_gene.tsv
661.84 kB
demux_NNNNCACAGGGANNNNN_unique_summary.tsv_summary_subtype.tsv
640 B
iCount xlsites
demux_NNNNGTTTCTTANNNNN_multi.bed.gz
1.83 MB
demux_NNNNGTTTCTTANNNNN_skipped.bam
473.17 kB
demux_NNNNGTTTCTTANNNNN_unique.bed.gz
271.71 kB
demux_NNNNGTTTCTTANNNNN_unique.bedgraph
1.01 MB
iCount xlsites
demux_NNNNCACAGGGANNNNN_multi.bed.gz
2.33 MB
demux_NNNNCACAGGGANNNNN_skipped.bam
627.21 kB
demux_NNNNCACAGGGANNNNN_unique.bed.gz
399.85 kB
demux_NNNNCACAGGGANNNNN_unique.bedgraph
1.52 MB
Cutadapt (single-end)
demux_NNNNCACAGGGANNNNN_trimmed_fastqc.zip
370.89 kB
demux_NNNNCACAGGGANNNNN_trimmed.fastq.gz
22.45 MB
Cutadapt (single-end)
demux_NNNNGTTTCAGGNNNNN_trimmed.fastq.gz
21.70 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_fastqc.zip
367.14 kB
Cutadapt (single-end)
demux_NNNNTCGAGATTNNNNN_trimmed.fastq.gz
21.00 MB
demux_NNNNTCGAGATTNNNNN_trimmed_fastqc.zip
472.18 kB
iCount xlsites
demux_NNNNTCGCCNNN_trimmed_trimmed_singleAndMulti.bed.gz
5.16 MB
demux_NNNNTCGCCNNN_trimmed_trimmed_skipped.bam
4.17 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_single.bed.gz
1.50 MB
demux_NNNNTCGCCNNN_trimmed_trimmed_single.bedgraph
6.43 MB
Cutadapt (single-end)
demux_NNNNTCGCCNNN_trimmed_trimmed_fastqc.zip
495.60 kB
demux_NNNNTCGCCNNN_trimmed_trimmed.fastq.gz
252.31 MB
iCount xlsites
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_skipped.bam
3.58 kB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_single.bed.gz
749.56 kB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
2.18 MB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_single.bedgraph
3.04 MB
STAR
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
6.82 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed.bam
125.46 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed.bam.bai
3.87 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_SJ.out.tab
91.46 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed.bw
29.42 kB
FASTQ file (single-end)
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju.fastq.gz
458.98 MB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_fastqc.zip
528.55 kB
STAR
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed.bam.bai
3.31 MB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed.bam
148.03 MB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
4.03 MB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_SJ.out.tab
101.44 kB
STAR
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed.bam
140.78 MB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
8.08 MB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_SJ.out.tab
104.07 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed.bam.bai
3.85 MB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed.bw
29.64 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNGTTTCNNN_trimmed_trimmed.bam
2.62 GB
demux_NNNNGTTTCNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
82.22 MB
demux_NNNNGTTTCNNN_trimmed_trimmed.bam.bai
5.03 MB
demux_NNNNGTTTCNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNGTTTCNNN_trimmed_trimmed_SJ.out.tab
465.36 kB
iCount xlsites
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_skipped.bam
3.11 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single.bed.gz
403.32 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single.bedgraph
1.53 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.44 MB
FASTQ file (single-end)
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju.fastq.gz
398.08 MB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_fastqc.zip
531.82 kB
STAR
demux_NNNNCAGGGNNN_trimmed_trimmed.bam.bai
3.82 MB
demux_NNNNCAGGGNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNCAGGGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
137.87 MB
demux_NNNNCAGGGNNN_trimmed_trimmed_SJ.out.tab
235.06 kB
demux_NNNNCAGGGNNN_trimmed_trimmed.bam
1.81 GB
STAR
demux_NNNNAGTCCNNN_trimmed_trimmed.bam.bai
4.70 MB
demux_NNNNAGTCCNNN_trimmed_trimmed.bam
1.91 GB
demux_NNNNAGTCCNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
57.62 MB
demux_NNNNAGTCCNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNAGTCCNNN_trimmed_trimmed_SJ.out.tab
535.28 kB
iCount xlsites
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_skipped.bam
3.21 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_single.bed.gz
302.64 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
1.98 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_single.bedgraph
1.13 MB
STAR
demux_NNNNCATACNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
112.90 MB
demux_NNNNCATACNNN_trimmed_trimmed.bam.bai
5.17 MB
demux_NNNNCATACNNN_trimmed_trimmed.bam
3.26 GB
demux_NNNNCATACNNN_trimmed_trimmed_stats.txt
1.82 kB
demux_NNNNCATACNNN_trimmed_trimmed_SJ.out.tab
841.35 kB
iCount xlsites
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_single.bed.gz
411.76 kB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_skipped.bam
3.17 kB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.37 MB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_single.bedgraph
1.57 MB
iCount xlsites
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_skipped.bam
3.23 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single.bedgraph
1.80 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.80 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single.bed.gz
471.49 kB
STAR
demux_NNNNTCGAGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
8.30 MB
demux_NNNNTCGAGNNN_trimmed_trimmed.bam.bai
1.93 MB
demux_NNNNTCGAGNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGNNN_trimmed_trimmed.bw
20.46 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_SJ.out.tab
37.13 kB
demux_NNNNTCGAGNNN_trimmed_trimmed.bam
58.69 MB
Cutadapt (single-end)
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_fastqc.zip
534.40 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed.fastq.gz
21.00 MB
iCount xlsites
demux_NNNNTCGAGNNN_trimmed_trimmed_single.bed.gz
25.42 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_singleAndMulti.bed.gz
320.95 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_single.bedgraph
86.77 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_skipped.bam
2.92 kB
iCount xlsites
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_single.bed.gz
383.14 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_skipped.bam
3.08 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_single.bedgraph
1.44 MB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.50 MB
iCount summary
demux_NNNNATACGNNN_trimmed_trimmed_single_summary_type.tsv
267 B
demux_NNNNATACGNNN_trimmed_trimmed_single_summary_subtype.tsv
640 B
demux_NNNNATACGNNN_trimmed_trimmed_single_summary_gene.tsv
822.95 kB
Cutadapt (single-end)
demux_NNNNGGAGCNNN_trimmed_trimmed.fastq.gz
327.15 MB
demux_NNNNGGAGCNNN_trimmed_trimmed_fastqc.zip
478.11 kB
FASTQ file (single-end)
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju.fastq.gz
211.96 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-ju_fastqc.zip
533.32 kB
iCount xlsites
demux_NNNNGTTTCTGCNNNNN_skipped.bam
336.39 kB
demux_NNNNGTTTCTGCNNNNN_unique.bedgraph
1.10 MB
demux_NNNNGTTTCTGCNNNNN_unique.bed.gz
295.07 kB
demux_NNNNGTTTCTGCNNNNN_multi.bed.gz
1.95 MB
iCount clusters
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_clustered.bed.gz
75.92 kB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_clustered.bedgraph
121.82 kB
iCount xlsites
demux_NNNNAACTCNNN_skipped.bam
3.21 MB
demux_NNNNAACTCNNN_unique.bed.gz
836.99 kB
demux_NNNNAACTCNNN_multi.bed.gz
3.14 MB
demux_NNNNAACTCNNN_unique.bedgraph
3.38 MB
iCount peaks
demux_NNNNATACGNNN_unique_peaks.bed.gz
106.52 kB
demux_NNNNATACGNNN_unique_scores.tsv.gz
738.55 kB
demux_NNNNATACGNNN_unique_peaks.bedgraph
235.61 kB
iCount xlsites
demux_NNNNGCTTGAGGNNNNN_skipped.bam
495.13 kB
demux_NNNNGCTTGAGGNNNNN_unique.bedgraph
500.57 kB
demux_NNNNGCTTGAGGNNNNN_multi.bed.gz
1.15 MB
demux_NNNNGCTTGAGGNNNNN_unique.bed.gz
139.24 kB
iCount xlsites
demux_NNNNTCGAGCTGNNNNN_multi.bed.gz
2.64 MB
demux_NNNNTCGAGCTGNNNNN_unique.bedgraph
1.62 MB
demux_NNNNTCGAGCTGNNNNN_unique.bed.gz
428.69 kB
demux_NNNNTCGAGCTGNNNNN_skipped.bam
674.93 kB
iCount xlsites
input-cd8-t-cells-rtonly-20190327-ju_trimmed_single.bed.gz
382 B
input-cd8-t-cells-rtonly-20190327-ju_trimmed_singleAndMulti.bed.gz
610 B
input-cd8-t-cells-rtonly-20190327-ju_trimmed_single.bedgraph
220 B
input-cd8-t-cells-rtonly-20190327-ju_trimmed_reads_single.bed.gz
389 B
input-cd8-t-cells-rtonly-20190327-ju_trimmed_skipped.bam
3.96 kB
K-mers
other_exon region.png
256.98 kB
kmer_frequency_utr3.tsv
4.51 kB
positional_distribution_intron.tsv
403.34 kB
kmer_frequency_ncRNA.tsv
5.86 kB
positional_distribution_genome.tsv
554.61 kB
kmer_frequency_intron.tsv
5.88 kB
ncRNA region.png
253.15 kB
utr3 region.png
194.83 kB
positional_distribution_ncRNA.tsv
502.95 kB
kmer_frequency_other_exon.tsv
5.17 kB
intron region.png
219.93 kB
positional_distribution_other_exon.tsv
185.11 kB
positional_distribution_utr3.tsv
149.28 kB
kmer_frequency_genome.tsv
5.84 kB
genome region.png
219.33 kB
K-mers
kmer_frequency_ncRNA.tsv
5.85 kB
intron region.png
216.51 kB
positional_distribution_utr3.tsv
162.75 kB
positional_distribution_intron.tsv
428.44 kB
kmer_frequency_genome.tsv
5.86 kB
kmer_frequency_utr3.tsv
4.75 kB
kmer_frequency_intron.tsv
5.86 kB
genome region.png
204.16 kB
utr3 region.png
169.69 kB
ncRNA region.png
273.57 kB
positional_distribution_genome.tsv
556.11 kB
positional_distribution_other_exon.tsv
192.29 kB
kmer_frequency_other_exon.tsv
5.41 kB
positional_distribution_ncRNA.tsv
504.57 kB
other_exon region.png
273.71 kB
K-mers
positional_distribution_intron.tsv
356.51 kB
ncRNA region.png
292.22 kB
other_exon region.png
284.83 kB
intron region.png
230.39 kB
kmer_frequency_ncRNA.tsv
5.86 kB
kmer_frequency_genome.tsv
5.82 kB
kmer_frequency_utr3.tsv
3.82 kB
utr3 region.png
162.19 kB
positional_distribution_genome.tsv
550.72 kB
positional_distribution_utr3.tsv
131.21 kB
kmer_frequency_other_exon.tsv
4.91 kB
positional_distribution_other_exon.tsv
174.66 kB
kmer_frequency_intron.tsv
5.91 kB
genome region.png
201.91 kB
positional_distribution_ncRNA.tsv
491.14 kB
iCount summary
demux_NNNNTCGAGGTCNNNNN_unique_summary.tsv_summary_gene.tsv
777.24 kB
demux_NNNNTCGAGGTCNNNNN_unique_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNTCGAGGTCNNNNN_unique_summary.tsv_summary_type.tsv
266 B
K-mers
intron region.png
224.09 kB
other_exon region.png
266.19 kB
kmer_frequency_genome.tsv
5.90 kB
kmer_frequency_utr3.tsv
5.27 kB
positional_distribution_utr3.tsv
171.40 kB
kmer_frequency_ncRNA.tsv
5.81 kB
kmer_frequency_intron.tsv
5.84 kB
positional_distribution_other_exon.tsv
225.17 kB
positional_distribution_genome.tsv
564.07 kB
positional_distribution_intron.tsv
463.36 kB
genome region.png
203.69 kB
utr3 region.png
207.23 kB
positional_distribution_ncRNA.tsv
531.93 kB
ncRNA region.png
292.71 kB
kmer_frequency_other_exon.tsv
5.57 kB
Upload iCount sample annotation
20180420_JU_iclip_annotation_lane20.tab.gz
2.82 kB
20180420_JU_iclip_annotation_lane20.xlsx
22.11 kB
iCount summary
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
642 B
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_single_summary_type.tsv
270 B
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_single_summary_gene.tsv
965.43 kB
iCount xlsites
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed_single.bed.gz
76.09 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed_singleAndMulti.bed.gz
135.25 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-ju_trimmed_single.bedgraph
246 B
FASTQ file (single-end)
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju.fastq.gz
199.00 MB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_fastqc.zip
529.58 kB
STAR
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
48.73 MB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped.bam.bai
3.88 MB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped.bw
32.27 kB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped.bam
245.19 MB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_SJ.out.tab
340.21 kB
iCount xlsites
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_single.bed.gz
711.90 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_skipped.bam
3.70 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_single.bedgraph
2.86 MB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
2.20 MB
FASTQ file (single-end)
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_fastqc.zip
540.97 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju.fastq.gz
465.30 MB
STAR
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed.bam
317.93 MB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
55.88 MB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju.fastq.gz
205.14 MB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_fastqc.zip
532.89 kB
STAR
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
35.81 MB
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped.bam
236.36 MB
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_SJ.out.tab
483.55 kB
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped.bam.bai
4.52 MB
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped.bw
45.43 kB
STAR
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
28.86 MB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_SJ.out.tab
457.06 kB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped.bam
166.11 MB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped.bam.bai
4.15 MB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped.bw
37.20 kB
FASTQ file (single-end)
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju.fastq.gz
262.37 MB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_fastqc.zip
532.25 kB
FASTQ file (single-end)
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju.fastq.gz
233.55 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_fastqc.zip
532.37 kB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_singleAndMulti.bed.gz
176.44 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_single.bed.gz
97.29 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_single.bedgraph
264 B
Reads (single-end)
demux_NNNNGATCGNNN_fastqc.zip
454.42 kB
demux_NNNNGATCGNNN.fastq.gz
191.58 MB
iCount summary
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_gene.tsv
604.52 kB
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_type.tsv
265 B
iCount annotate
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_annotated.bedgraph
6.42 MB
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_annotated.bed.gz
2.13 MB
iCount summary
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_grouped_cdna_summary_gene.tsv
113.75 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_grouped_cdna_summary_subtype.tsv
513 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_grouped_cdna_summary_type.tsv
265 B
iCount peaks
demux_NNNNTCGCCNNN_unique_peaks.bedgraph
431.70 kB
demux_NNNNTCGCCNNN_unique_peaks.bed.gz
162.70 kB
demux_NNNNTCGCCNNN_unique_scores.tsv.gz
1.44 MB
iCount group
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped.bedgraph
11.59 MB
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped.bed.gz
2.63 MB
iCount summary
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_grouped_cdna_summary_type.tsv
429 B
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_grouped_cdna_summary_subtype.tsv
1003 B
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_grouped_cdna_summary_gene.tsv
1.34 MB
iCount group
m1A_S2HG Donor1_20180223_JU_grouped.bedgraph
1.79 MB
m1A_S2HG Donor1_20180223_JU_grouped.bed.gz
477.84 kB
iCount group
Input_Naive Donors1&3_20180223_JU_grouped.bedgraph
2.80 MB
Input_Naive Donors1&3_20180223_JU_grouped.bed.gz
718.87 kB
iCount xlsites
demux_NNNNATACGNNN_skipped.bam
277.24 kB
demux_NNNNATACGNNN_unique.bedgraph
175.89 kB
demux_NNNNATACGNNN_unique.bed.gz
50.58 kB
demux_NNNNATACGNNN_multi.bed.gz
495.86 kB
iCount annotate
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_grouped_cdna_annotated.bed.gz
79.20 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_grouped_cdna_annotated.bedgraph
177.91 kB
iCount summary
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_grouped_cdna_summary_gene.tsv
1.53 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_grouped_cdna_summary_subtype.tsv
1011 B
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_grouped_cdna_summary_type.tsv
433 B
iCount annotate
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_grouped_cdna_annotated.bed.gz
2.57 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_grouped_cdna_annotated.bedgraph
8.38 MB
Upload iCount sample annotation
20180420_JU_iclip_annotation_lane20.xlsx
22.09 kB
20180420_JU_iclip_annotation_lane20.tab.gz
2.83 kB
iCount summary
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_grouped_cdna_summary_type.tsv
436 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_grouped_cdna_summary_gene.tsv
1.43 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_grouped_cdna_summary_subtype.tsv
1017 B
iCount summary
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_grouped_cdna_summary_type.tsv
439 B
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_grouped_cdna_summary_subtype.tsv
1016 B
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_grouped_cdna_summary_gene.tsv
1.70 MB
iCount annotate
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_grouped_cdna_annotated.bedgraph
37.78 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_grouped_cdna_annotated.bed.gz
10.31 MB
iCount clusters
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_clustered.bed.gz
124.04 kB
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_clustered.bedgraph
210.23 kB
iCount group
Input_Vehicle Donors1&2&3_20180223_JU_grouped.bed.gz
915.13 kB
Input_Vehicle Donors1&2&3_20180223_JU_grouped.bedgraph
3.62 MB
iCount summary
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single_summary_type.tsv
271 B
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single_summary_gene.tsv
1.12 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single_summary_subtype.tsv
647 B
STAR
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
114.63 MB
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed.bam
542.62 MB
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed_SJ.out.tab
5.18 kB
iCount summary
Input_R2HG Donors1&2&3_20180223_JU_grouped_summary.tsv_summary_gene.tsv
1003.13 kB
Input_R2HG Donors1&2&3_20180223_JU_grouped_summary.tsv_summary_subtype.tsv
642 B
Input_R2HG Donors1&2&3_20180223_JU_grouped_summary.tsv_summary_type.tsv
267 B
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
34.67 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed.bam
153.85 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
iCount peaks
demux_NNNNCATACNNN_unique_peaks.bed.gz
285.43 kB
demux_NNNNCATACNNN_unique_scores.tsv.gz
2.25 MB
demux_NNNNCATACNNN_unique_peaks.bedgraph
850.00 kB
FASTQ file (single-end)
input-cd8-t-cells-rtonly-20190327-ju_fastqc.zip
520.38 kB
input-cd8-t-cells-rtonly-20190327-ju.fastq.gz
49.79 kB
iCount xlsites
demux_NNNNAGTCCNNN_trimmed_trimmed_single.bed.gz
1.52 MB
demux_NNNNAGTCCNNN_trimmed_trimmed_single.bedgraph
6.57 MB
demux_NNNNAGTCCNNN_trimmed_trimmed_singleAndMulti.bed.gz
5.12 MB
demux_NNNNAGTCCNNN_trimmed_trimmed_skipped.bam
3.72 kB
Cutadapt (single-end)
input-cd8-t-cells-rtonly-20190327-ju_trimmed_fastqc.zip
523.92 kB
input-cd8-t-cells-rtonly-20190327-ju_trimmed.fastq.gz
51.09 kB
iCount xlsites
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed_singleAndMulti.bed.gz
177.07 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed_single.bed.gz
102.11 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed_skipped.bam
3.96 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed_single.bedgraph
266 B
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed_reads_single.bed.gz
102.80 kB
FASTQ file (single-end)
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju.fastq.gz
64.45 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_fastqc.zip
454.65 kB
iCount reads proxy
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_fastqc.zip
453.56 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped.fastq.gz
17.68 MB
iCount xlsites
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed_single.bed.gz
111.31 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed_reads_single.bed.gz
111.99 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed_skipped.bam
3.96 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed_single.bedgraph
266 B
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed_singleAndMulti.bed.gz
190.26 kB
FASTQ file (single-end)
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_fastqc.zip
450.60 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju.fastq.gz
97.99 MB
iCount reads proxy
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped.fastq.gz
27.03 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_fastqc.zip
451.15 kB
iCount reads proxy
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped.fastq.gz
14.06 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_fastqc.zip
460.56 kB
iCount xlsites
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed_skipped.bam
3.96 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed_singleAndMulti.bed.gz
175.59 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed_reads_single.bed.gz
101.53 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed_single.bed.gz
100.79 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed_single.bedgraph
266 B
FASTQ file (single-end)
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju.fastq.gz
62.51 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_fastqc.zip
449.62 kB
iCount xlsites
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed_single.bed.gz
97.90 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed_reads_single.bed.gz
98.42 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed_skipped.bam
3.96 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed_singleAndMulti.bed.gz
168.29 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_trimmed_single.bedgraph
266 B
iCount xlsites
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed_single.bed.gz
108.16 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed_skipped.bam
3.96 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed_reads_single.bed.gz
108.97 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed_singleAndMulti.bed.gz
184.15 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-ju_trimmed_single.bedgraph
266 B
iCount reads proxy
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped.fastq.gz
22.32 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_fastqc.zip
452.39 kB
iCount reads proxy
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_fastqc.zip
457.60 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped.fastq.gz
21.15 MB
K-mers
intron region.png
224.35 kB
other_exon region.png
294.48 kB
kmer_frequency_genome.tsv
5.87 kB
kmer_frequency_ncRNA.tsv
5.84 kB
positional_distribution_intron.tsv
414.78 kB
kmer_frequency_intron.tsv
5.87 kB
positional_distribution_utr3.tsv
137.58 kB
positional_distribution_ncRNA.tsv
505.48 kB
ncRNA region.png
292.25 kB
utr3 region.png
182.81 kB
genome region.png
192.91 kB
kmer_frequency_utr3.tsv
4.20 kB
positional_distribution_other_exon.tsv
197.93 kB
kmer_frequency_other_exon.tsv
5.47 kB
positional_distribution_genome.tsv
554.39 kB
FASTQ file (single-end)
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju.fastq.gz
52.97 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-ju_fastqc.zip
451.08 kB
iCount xlsites
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed_skipped.bam
3.96 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed_singleAndMulti.bed.gz
180.82 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed_single.bed.gz
107.54 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed_reads_single.bed.gz
108.05 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed_single.bedgraph
266 B
iCount xlsites
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed_single.bed.gz
107.53 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed_skipped.bam
3.96 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed_single.bedgraph
266 B
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed_singleAndMulti.bed.gz
185.75 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed_reads_single.bed.gz
108.39 kB
iCount reads proxy
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped.fastq.gz
23.11 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_fastqc.zip
458.05 kB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
92.95 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz
51.48 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph
258 B
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz
50.41 kB
FASTQ file (single-end)
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju.fastq.gz
89.14 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_fastqc.zip
449.80 kB
iCount xlsites
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed_reads_single.bed.gz
109.71 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed_single.bed.gz
108.99 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed_singleAndMulti.bed.gz
185.32 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed_skipped.bam
3.96 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed_single.bedgraph
266 B
FASTQ file (single-end)
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju.fastq.gz
82.73 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_fastqc.zip
448.77 kB
Cutadapt (single-end)
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed.fastq.gz
84.88 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed_fastqc.zip
458.82 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju.fastq.gz
118.07 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_fastqc.zip
472.37 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju.fastq.gz
99.41 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_fastqc.zip
474.28 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped.fastq.gz
25.10 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_fastqc.zip
489.19 kB
iCount summary
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_summary_type.tsv
268 B
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_summary_subtype.tsv
649 B
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_summary_gene.tsv
1.20 MB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju.fastq.gz
119.16 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_fastqc.zip
483.60 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju.fastq.gz
176.26 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_fastqc.zip
458.47 kB
iCount summary
demux_NNNNCAGGGNNN_trimmed_single_summary.tsv_summary_type.tsv
267 B
demux_NNNNCAGGGNNN_trimmed_single_summary.tsv_summary_gene.tsv
673.14 kB
demux_NNNNCAGGGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
647 B
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_fastqc.zip
469.59 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju.fastq.gz
103.10 MB
STAR
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
74.39 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bw
104.70 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam.bai
20.49 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.bam
107.20 MB
iCount summary
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.11 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
STAR
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
64.64 MB
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed.bam
300.38 MB
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
m6a-cd8-t-cells-igg-polya-20190312-ju.fastq.gz
12.14 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_fastqc.zip
570.39 kB
iCount reads proxy
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped.fastq.gz
10.46 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_fastqc.zip
582.74 kB
Cutadapt (single-end)
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed.fastq.gz
189.96 MB
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed_fastqc.zip
482.82 kB
STAR
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam
58.30 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam.bai
17.68 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
41.32 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bw
104.12 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab
0 B
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped.fastq.gz
23.34 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_fastqc.zip
485.88 kB
FASTQ file (single-end)
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju.fastq.gz
147.11 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_fastqc.zip
450.62 kB
iCount group
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped.bed.gz
1.48 MB
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped.bedgraph
6.42 MB
Upload iCount sample annotation
20180420_JU_iclip_annotation_UN1802_PG_lane20_mySamples_ConsensusMapping.tab.gz
1.14 kB
20180420_JU_iclip_annotation_UN1802_PG_lane20_mySamples_ConsensusMapping.xlsx
17.21 kB
FASTQ file (single-end)
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju.fastq.gz
113.56 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_fastqc.zip
465.38 kB
iCount group
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped.bed.gz
3.19 MB
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped.bedgraph
14.07 MB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
59.97 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
61.95 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
88.17 kB
iCount clusters
Input_Naive Donors1&3_20180223_JU_grouped_clustered.bed.gz
46.39 kB
Input_Naive Donors1&3_20180223_JU_grouped_clustered.bedgraph
67.80 kB
FASTQ file (single-end)
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju.fastq.gz
143.49 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_fastqc.zip
444.61 kB
STAR
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
29.37 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped.bam.bai
4.24 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped.bam
162.83 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped.bw
47.26 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_SJ.out.tab
880.15 kB
FASTQ file (single-end)
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju.fastq.gz
92.80 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_fastqc.zip
441.09 kB
Cutadapt (single-end)
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed.fastq.gz
66.06 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed_fastqc.zip
458.58 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
60.64 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
63.00 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
94.07 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
Cutadapt (single-end)
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed_fastqc.zip
459.28 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed.fastq.gz
64.09 MB
iCount summary
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single_summary_gene.tsv
1.18 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single_summary_subtype.tsv
649 B
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single_summary_type.tsv
271 B
Cutadapt (single-end)
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed.fastq.gz
84.84 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed_fastqc.zip
460.29 kB
Cutadapt (single-end)
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed_fastqc.zip
457.72 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed.fastq.gz
91.39 MB
FASTQ file (single-end)
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju.fastq.gz
49.14 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_fastqc.zip
461.43 kB
iCount reads proxy
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped.fastq.gz
47.10 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_fastqc.zip
460.41 kB
iCount peaks
demux_NNNNGATCGNNN_unique_peaks.bed.gz
101.79 kB
demux_NNNNGATCGNNN_unique_scores.tsv.gz
829.70 kB
demux_NNNNGATCGNNN_unique_peaks.bedgraph
224.65 kB
iCount peaks
demux_NNNNTCGAGNNN_unique_peaks.bed.gz
173.38 kB
demux_NNNNTCGAGNNN_unique_scores.tsv.gz
1.08 MB
demux_NNNNTCGAGNNN_unique_peaks.bedgraph
418.33 kB
iCount peaks
demux_NNNNAGTCCNNN_unique_peaks.bed.gz
167.46 kB
demux_NNNNAGTCCNNN_unique_peaks.bedgraph
450.87 kB
demux_NNNNAGTCCNNN_unique_scores.tsv.gz
1.46 MB
Cutadapt (single-end)
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_fastqc.zip
461.67 kB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed.fastq.gz
22.45 MB
iCount peaks
demux_NNNNGGAGCNNN_unique_scores.tsv.gz
2.13 MB
demux_NNNNGGAGCNNN_unique_peaks.bed.gz
206.82 kB
demux_NNNNGGAGCNNN_unique_peaks.bedgraph
585.74 kB
iCount peaks
demux_NNNNTCATCNNN_unique_scores.tsv.gz
1.19 MB
demux_NNNNTCATCNNN_unique_peaks.bed.gz
160.60 kB
demux_NNNNTCATCNNN_unique_peaks.bedgraph
395.38 kB
iCount peaks
demux_NNNNGTTTCNNN_unique_peaks.bed.gz
216.42 kB
demux_NNNNGTTTCNNN_unique_peaks.bedgraph
592.92 kB
demux_NNNNGTTTCNNN_unique_scores.tsv.gz
1.91 MB
iCount xlsites
demux_NNNNTCGCCNNN_skipped.bam
4.98 MB
demux_NNNNTCGCCNNN_unique.bed.gz
1.46 MB
demux_NNNNTCGCCNNN_multi.bed.gz
4.90 MB
demux_NNNNTCGCCNNN_unique.bedgraph
6.23 MB
STAR
demux_NNNNCATACNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
148.44 MB
demux_NNNNCATACNNN_trimmed_trimmed_trimmed.bam
757.86 MB
demux_NNNNCATACNNN_trimmed_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNCATACNNN_trimmed_trimmed_trimmed_SJ.out.tab
9.85 kB
demux_NNNNCATACNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
STAR
demux_NNNNTCGCCNNN.bam.bai
4.74 MB
demux_NNNNTCGCCNNN_unmapped.out.mate1.fastq.gz
78.00 MB
demux_NNNNTCGCCNNN_SJ.out.tab
516.08 kB
demux_NNNNTCGCCNNN_stats.txt
1.81 kB
demux_NNNNTCGCCNNN.bam
1.85 GB
iCount summary
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
481 B
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
1.04 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.94 MB
iCount summary
demux_NNNNATACGNNN_unique_summary.tsv_summary_gene.tsv
813.65 kB
demux_NNNNATACGNNN_unique_summary.tsv_summary_subtype.tsv
641 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_type.tsv
267 B
iCount xlsites
demux_NNNNATACGNNN_skipped.bam
4.55 MB
demux_NNNNATACGNNN_multi.bed.gz
2.58 MB
demux_NNNNATACGNNN_unique.bed.gz
659.63 kB
demux_NNNNATACGNNN_unique.bedgraph
2.63 MB
STAR
demux_NNNNATACGNNN.bam
1.81 GB
demux_NNNNATACGNNN_SJ.out.tab
250.56 kB
demux_NNNNATACGNNN_stats.txt
1.81 kB
demux_NNNNATACGNNN.bam.bai
4.17 MB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
71.47 MB
iCount xlsites
demux_NNNNCATACNNN_skipped.bam
9.33 MB
demux_NNNNCATACNNN_unique.bed.gz
2.41 MB
demux_NNNNCATACNNN_unique.bedgraph
10.59 MB
demux_NNNNCATACNNN_multi.bed.gz
7.74 MB
iCount summary
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single_summary_subtype.tsv
635 B
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single_summary_gene.tsv
618.28 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single_summary_type.tsv
263 B
iCount summary
demux_NNNNGGAGCNNN_unique_summary.tsv_summary_type.tsv
271 B
demux_NNNNGGAGCNNN_unique_summary.tsv_summary_gene.tsv
1.09 MB
demux_NNNNGGAGCNNN_unique_summary.tsv_summary_subtype.tsv
650 B
iCount clusters
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_clustered.bed.gz
347.60 kB
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_clustered.bedgraph
864.22 kB
STAR
demux_NNNNGGAGCNNN.bam.bai
5.03 MB
demux_NNNNGGAGCNNN.bam
2.37 GB
demux_NNNNGGAGCNNN_unmapped.out.mate1.fastq.gz
94.26 MB
demux_NNNNGGAGCNNN_SJ.out.tab
547.34 kB
demux_NNNNGGAGCNNN_stats.txt
1.81 kB
iCount xlsites
demux_NNNNAGTCCNNN_skipped.bam
4.71 MB
demux_NNNNAGTCCNNN_unique.bed.gz
1.48 MB
demux_NNNNAGTCCNNN_multi.bed.gz
4.90 MB
demux_NNNNAGTCCNNN_unique.bedgraph
6.41 MB
STAR
demux_NNNNAACTCNNN_unmapped.out.mate1.fastq.gz
55.96 MB
demux_NNNNAACTCNNN.bam.bai
4.15 MB
demux_NNNNAACTCNNN.bam
1.38 GB
demux_NNNNAACTCNNN_stats.txt
1.81 kB
demux_NNNNAACTCNNN_SJ.out.tab
312.62 kB
iCount summary
demux_NNNNCACAGNNN_unique_summary.tsv_summary_subtype.tsv
641 B
demux_NNNNCACAGNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNCACAGNNN_unique_summary.tsv_summary_gene.tsv
917.76 kB
iCount xlsites
demux_NNNNCACAGNNN_unique.bed.gz
833.39 kB
demux_NNNNCACAGNNN_skipped.bam
8.33 MB
demux_NNNNCACAGNNN_unique.bedgraph
3.33 MB
demux_NNNNCACAGNNN_multi.bed.gz
3.30 MB
iCount xlsites
demux_NNNNCAGGGNNN_unique.bed.gz
400.49 kB
demux_NNNNCAGGGNNN_multi.bed.gz
2.03 MB
demux_NNNNCAGGGNNN_skipped.bam
8.63 MB
demux_NNNNCAGGGNNN_unique.bedgraph
1.50 MB
STAR
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
37.31 kB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped.bam.bai
1.42 MB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped.bam
138.58 kB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_SJ.out.tab
509 B
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_stats.txt
1.78 kB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped.bw
15.43 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
2.53 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_skipped.bam
3.32 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_single.bed.gz
1.16 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
1.26 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_single.bedgraph
5.07 MB
iCount peaks
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_peaks.bed.gz
152.16 kB
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_scores.tsv.gz
917.27 kB
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_peaks.bedgraph
357.41 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
62.06 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
59.74 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
91.92 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
iCount group
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped.bedgraph
16.12 MB
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped.bed.gz
3.64 MB
iCount clusters
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_clustered.bedgraph
385.52 kB
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_clustered.bed.gz
203.21 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
68.80 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
71.42 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
104.80 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped.fastq.gz
22.90 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_fastqc.zip
493.68 kB
iCount annotate
m1A_Donor1_ALL-3samples_20180223_JU_grouped_annotated.bedgraph
3.77 MB
m1A_Donor1_ALL-3samples_20180223_JU_grouped_annotated.bed.gz
1.29 MB
K-mers
positional_distribution_intron.tsv
193.54 kB
ncRNA region.png
282.70 kB
other_exon region.png
258.64 kB
kmer_frequency_utr3.tsv
5.26 kB
intron region.png
225.40 kB
positional_distribution_genome.tsv
534.74 kB
kmer_frequency_intron.tsv
5.61 kB
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_genome.tsv
5.81 kB
kmer_frequency_other_exon.tsv
5.85 kB
positional_distribution_utr3.tsv
246.84 kB
positional_distribution_ncRNA.tsv
476.38 kB
utr3 region.png
249.07 kB
positional_distribution_other_exon.tsv
363.53 kB
genome region.png
321.68 kB
K-mers
other_exon region.png
296.95 kB
kmer_frequency_intron.tsv
5.26 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_intron.tsv
179.86 kB
positional_distribution_ncRNA.tsv
454.71 kB
intron region.png
203.25 kB
ncRNA region.png
307.63 kB
kmer_frequency_genome.tsv
5.81 kB
kmer_frequency_utr3.tsv
5.48 kB
positional_distribution_utr3.tsv
232.00 kB
positional_distribution_genome.tsv
521.68 kB
kmer_frequency_other_exon.tsv
5.85 kB
utr3 region.png
291.75 kB
genome region.png
305.75 kB
positional_distribution_other_exon.tsv
350.28 kB
STAR
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
5.47 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped.bam.bai
4.50 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped.bam
70.57 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped.bw
41.09 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_SJ.out.tab
339.13 kB
STAR
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
9.00 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped.bam.bai
4.33 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped.bw
50.56 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped.bam
106.48 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_SJ.out.tab
505.79 kB
K-mers
other_exon region.png
253.50 kB
kmer_frequency_intron.tsv
5.57 kB
positional_distribution_intron.tsv
222.85 kB
positional_distribution_ncRNA.tsv
473.44 kB
intron region.png
184.51 kB
ncRNA region.png
253.07 kB
kmer_frequency_other_exon.tsv
5.84 kB
kmer_frequency_utr3.tsv
5.49 kB
kmer_frequency_ncRNA.tsv
5.87 kB
utr3 region.png
261.68 kB
kmer_frequency_genome.tsv
5.80 kB
positional_distribution_utr3.tsv
250.34 kB
positional_distribution_genome.tsv
532.25 kB
positional_distribution_other_exon.tsv
328.08 kB
genome region.png
263.78 kB
STAR
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped.bam.bai
4.59 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.99 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped.bw
39.50 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped.bam
70.73 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_SJ.out.tab
337.45 kB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
26.96 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped.bam
92.79 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped.bam.bai
3.76 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_SJ.out.tab
372.94 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped.bw
28.48 kB
K-mers
positional_distribution_intron.tsv
157.07 kB
kmer_frequency_utr3.tsv
5.34 kB
other_exon region.png
230.01 kB
kmer_frequency_ncRNA.tsv
5.89 kB
positional_distribution_utr3.tsv
230.36 kB
positional_distribution_genome.tsv
522.58 kB
utr3 region.png
260.27 kB
ncRNA region.png
292.53 kB
intron region.png
228.00 kB
kmer_frequency_other_exon.tsv
5.79 kB
genome region.png
318.94 kB
positional_distribution_other_exon.tsv
313.34 kB
kmer_frequency_intron.tsv
5.20 kB
kmer_frequency_genome.tsv
5.81 kB
positional_distribution_ncRNA.tsv
458.14 kB
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_reads_single.bed.gz
7.20 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bed.gz
6.87 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bedgraph
222 B
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
7.44 kB
K-mers
positional_distribution_intron.tsv
94.74 kB
genome region.png
203.55 kB
positional_distribution_utr3.tsv
66.20 kB
kmer_frequency_intron.tsv
1.61 kB
intron region.png
156.25 kB
positional_distribution_genome.tsv
155.00 kB
kmer_frequency_utr3.tsv
1.16 kB
kmer_frequency_other_exon.tsv
3.01 kB
kmer_frequency_genome.tsv
4.88 kB
positional_distribution_other_exon.tsv
118.11 kB
utr3 region.png
137.32 kB
other_exon region.png
182.66 kB
iCount xlsites
demux_NNNNAGGCANNN_unique.bed.gz
205.56 kB
demux_NNNNAGGCANNN_multi.bed.gz
1.36 MB
demux_NNNNAGGCANNN_unique.bedgraph
764.73 kB
demux_NNNNAGGCANNN_skipped.bam
1.31 MB
STAR
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped.bam.bai
4.41 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
7.26 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped.bam
88.95 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_SJ.out.tab
439.34 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190327-jufastqgz_unmapped.bw
47.89 kB
STAR
demux_NNNNGATCGNNN.bam
1.71 GB
demux_NNNNGATCGNNN_SJ.out.tab
208.67 kB
demux_NNNNGATCGNNN.bam.bai
3.68 MB
demux_NNNNGATCGNNN_stats.txt
1.81 kB
demux_NNNNGATCGNNN_unmapped.out.mate1.fastq.gz
148.52 MB
K-mers
kmer_frequency_ncRNA.tsv
4.95 kB
positional_distribution_intron.tsv
169.26 kB
kmer_frequency_intron.tsv
4.98 kB
ncRNA region.png
186.10 kB
intron region.png
210.05 kB
positional_distribution_ncRNA.tsv
187.83 kB
kmer_frequency_utr3.tsv
5.78 kB
other_exon region.png
219.88 kB
kmer_frequency_genome.tsv
5.88 kB
utr3 region.png
254.07 kB
positional_distribution_other_exon.tsv
556.42 kB
kmer_frequency_other_exon.tsv
5.81 kB
positional_distribution_genome.tsv
564.39 kB
positional_distribution_utr3.tsv
517.05 kB
genome region.png
284.42 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
18.61 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped.bam.bai
3.76 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_SJ.out.tab
322.03 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped.bw
27.88 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped.bam
75.82 MB
STAR
demux_NNNNCACAGAGGNNNNN.bam.bai
3.29 MB
demux_NNNNCACAGAGGNNNNN.bam
77.37 MB
demux_NNNNCACAGAGGNNNNN_unmapped.out.mate1.fastq.gz
2.48 MB
demux_NNNNCACAGAGGNNNNN_stats.txt
1.79 kB
demux_NNNNCACAGAGGNNNNN_SJ.out.tab
62.10 kB
STAR
demux_NNNNGTTTCAGGNNNNN_unmapped.out.mate1.fastq.gz
5.46 MB
demux_NNNNGTTTCAGGNNNNN_stats.txt
1.80 kB
demux_NNNNGTTTCAGGNNNNN_SJ.out.tab
145.27 kB
demux_NNNNGTTTCAGGNNNNN.bam
172.83 MB
demux_NNNNGTTTCAGGNNNNN.bam.bai
3.91 MB
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped.fastq.gz
35.33 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_fastqc.zip
478.28 kB
STAR
demux_NNNNCACAGCGTNNNNN.bam
148.10 MB
demux_NNNNCACAGCGTNNNNN_unmapped.out.mate1.fastq.gz
4.10 MB
demux_NNNNCACAGCGTNNNNN.bam.bai
3.31 MB
demux_NNNNCACAGCGTNNNNN_stats.txt
1.80 kB
demux_NNNNCACAGCGTNNNNN_SJ.out.tab
101.09 kB
iCount xlsites
demux_NNNNGATCGNNN_multi.bed.gz
2.05 MB
demux_NNNNGATCGNNN_skipped.bam
7.96 MB
demux_NNNNGATCGNNN_unique.bed.gz
383.76 kB
demux_NNNNGATCGNNN_unique.bedgraph
1.44 MB
Reads (single-end)
demux_NNNNAGACTNNN.fastq.gz
23.49 MB
demux_NNNNAGACTNNN_fastqc.zip
454.58 kB
K-mers
kmer_frequency_intron.tsv
5.39 kB
positional_distribution_ncRNA.tsv
308.62 kB
intron region.png
210.94 kB
kmer_frequency_ncRNA.tsv
5.72 kB
other_exon region.png
234.79 kB
positional_distribution_intron.tsv
208.78 kB
kmer_frequency_genome.tsv
5.89 kB
positional_distribution_utr3.tsv
520.07 kB
utr3 region.png
301.68 kB
kmer_frequency_utr3.tsv
5.78 kB
ncRNA region.png
241.70 kB
positional_distribution_other_exon.tsv
556.45 kB
kmer_frequency_other_exon.tsv
5.82 kB
genome region.png
230.79 kB
positional_distribution_genome.tsv
567.69 kB
STAR
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped.bam
98.31 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_SJ.out.tab
450.60 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
7.57 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_stats.txt
1.80 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped.bam.bai
4.45 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped.bw
45.25 kB
K-mers
positional_distribution_intron.tsv
209.29 kB
ncRNA region.png
292.29 kB
other_exon region.png
197.62 kB
kmer_frequency_intron.tsv
5.45 kB
positional_distribution_ncRNA.tsv
313.30 kB
kmer_frequency_utr3.tsv
5.89 kB
kmer_frequency_ncRNA.tsv
5.73 kB
positional_distribution_genome.tsv
570.39 kB
positional_distribution_other_exon.tsv
570.42 kB
intron region.png
292.15 kB
utr3 region.png
253.34 kB
kmer_frequency_other_exon.tsv
5.90 kB
kmer_frequency_genome.tsv
5.83 kB
positional_distribution_utr3.tsv
546.53 kB
genome region.png
280.90 kB
K-mers
other_exon region.png
139.32 kB
kmer_frequency_ncRNA.tsv
5.85 kB
positional_distribution_intron.tsv
533.17 kB
kmer_frequency_utr3.tsv
5.90 kB
kmer_frequency_intron.tsv
5.84 kB
ncRNA region.png
269.92 kB
positional_distribution_genome.tsv
562.00 kB
intron region.png
268.16 kB
positional_distribution_ncRNA.tsv
554.71 kB
positional_distribution_utr3.tsv
567.06 kB
kmer_frequency_genome.tsv
5.79 kB
utr3 region.png
210.33 kB
kmer_frequency_other_exon.tsv
5.87 kB
genome region.png
147.07 kB
positional_distribution_other_exon.tsv
573.48 kB
iCount summary
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_type.tsv
270 B
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_gene.tsv
1.01 MB
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_subtype.tsv
644 B
STAR
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped.bam.bai
4.39 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_SJ.out.tab
461.70 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
7.81 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped.bam
89.56 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped.bw
48.10 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_stats.txt
1.80 kB
K-mers
other_exon region.png
171.25 kB
kmer_frequency_ncRNA.tsv
5.87 kB
kmer_frequency_intron.tsv
5.85 kB
positional_distribution_ncRNA.tsv
372.33 kB
kmer_frequency_utr3.tsv
5.88 kB
intron region.png
188.46 kB
positional_distribution_genome.tsv
555.13 kB
positional_distribution_utr3.tsv
564.67 kB
positional_distribution_intron.tsv
292.90 kB
utr3 region.png
242.76 kB
kmer_frequency_genome.tsv
5.81 kB
kmer_frequency_other_exon.tsv
5.83 kB
ncRNA region.png
320.14 kB
genome region.png
239.08 kB
positional_distribution_other_exon.tsv
566.43 kB
K-mers
kmer_frequency_intron.tsv
5.91 kB
intron region.png
272.87 kB
positional_distribution_ncRNA.tsv
495.97 kB
kmer_frequency_utr3.tsv
5.76 kB
kmer_frequency_ncRNA.tsv
5.88 kB
other_exon region.png
151.10 kB
kmer_frequency_genome.tsv
5.89 kB
positional_distribution_utr3.tsv
562.06 kB
positional_distribution_intron.tsv
367.38 kB
positional_distribution_genome.tsv
567.49 kB
utr3 region.png
207.31 kB
positional_distribution_other_exon.tsv
562.22 kB
ncRNA region.png
288.31 kB
kmer_frequency_other_exon.tsv
5.81 kB
genome region.png
184.49 kB
iCount peaks
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_scores.tsv.gz
2.25 MB
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_peaks.bedgraph
851.16 kB
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_peaks.bed.gz
285.82 kB
iCount summary
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_gene.tsv
1.00 MB
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_subtype.tsv
645 B
iCount summary
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_type.tsv
272 B
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_gene.tsv
1.07 MB
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_subtype.tsv
645 B
iCount peaks
demux_NNNNCCTGCNNN_unique_peaks.bedgraph
246.07 kB
demux_NNNNCCTGCNNN_unique_scores.tsv.gz
830.84 kB
demux_NNNNCCTGCNNN_unique_peaks.bed.gz
105.90 kB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped.bam
91.52 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped.bam.bai
3.78 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
14.96 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_SJ.out.tab
316.83 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped.bw
28.50 kB
STAR
demux_NNNNTCGAGNNN.bam.bai
5.16 MB
demux_NNNNTCGAGNNN_unmapped.out.mate1.fastq.gz
131.93 MB
demux_NNNNTCGAGNNN_stats.txt
1.81 kB
demux_NNNNTCGAGNNN.bam
3.30 GB
demux_NNNNTCGAGNNN_SJ.out.tab
400.96 kB
iCount xlsites
demux_NNNNGTTTCNNN_unique.bed.gz
2.03 MB
demux_NNNNGTTTCNNN_multi.bed.gz
6.99 MB
demux_NNNNGTTTCNNN_skipped.bam
5.90 MB
demux_NNNNGTTTCNNN_unique.bedgraph
8.68 MB
Reads (single-end)
demux_nomatch.fastq.gz
857.89 MB
demux_nomatch_fastqc.zip
520.87 kB
STAR
demux_NNNNCTGTANNN.bam
317.17 MB
demux_NNNNCTGTANNN.bam.bai
3.31 MB
demux_NNNNCTGTANNN_unmapped.out.mate1.fastq.gz
43.66 MB
demux_NNNNCTGTANNN_stats.txt
1.81 kB
demux_NNNNCTGTANNN_SJ.out.tab
73.75 kB
iCount xlsites
demux_NNNNTCGAGGTCNNNNN_multi.bed.gz
3.27 MB
demux_NNNNTCGAGGTCNNNNN_unique.bed.gz
564.75 kB
demux_NNNNTCGAGGTCNNNNN_unique.bedgraph
2.17 MB
demux_NNNNTCGAGGTCNNNNN_skipped.bam
971.40 kB
STAR
demux_NNNNTCGAGTTANNNNN_unmapped.out.mate1.fastq.gz
22.14 MB
demux_NNNNTCGAGTTANNNNN.bam.bai
3.36 MB
demux_NNNNTCGAGTTANNNNN.bam
157.48 MB
demux_NNNNTCGAGTTANNNNN_SJ.out.tab
101.22 kB
demux_NNNNTCGAGTTANNNNN_stats.txt
1.80 kB
iCount summary
demux_NNNNATACGNNN_unique_summary.tsv_summary_gene.tsv
148.08 kB
demux_NNNNATACGNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_subtype.tsv
626 B
iCount clusters
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_clustered.bedgraph
123.85 kB
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_clustered.bed.gz
76.92 kB
iCount clusters
m1A_R2HG Donor1_20180223_JU_grouped_clustered.bedgraph
106.81 kB
m1A_R2HG Donor1_20180223_JU_grouped_clustered.bed.gz
70.91 kB
iCount clusters
m1A_S2HG Donor1_20180223_JU_grouped_clustered.bed.gz
72.99 kB
m1A_S2HG Donor1_20180223_JU_grouped_clustered.bedgraph
109.31 kB
STAR
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed_unmapped.out.mate1.fastq.gz
17.68 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed_SJ.out.tab
0 B
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed.bam
122.73 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-ju_trimmed_stats.txt
1.78 kB
iCount clusters
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_clustered.bed.gz
80.10 kB
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_clustered.bedgraph
128.48 kB
iCount clusters
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_clustered.bed.gz
167.89 kB
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_clustered.bedgraph
304.57 kB
STAR
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed_unmapped.out.mate1.fastq.gz
27.03 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed.bam
179.79 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed_SJ.out.tab
0 B
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-ju_trimmed_stats.txt
1.78 kB
iCount group
m1A_Vehicle Donor1_20180223_JU_grouped.bed.gz
390.07 kB
m1A_Vehicle Donor1_20180223_JU_grouped.bedgraph
1.46 MB
iCount group
Input_R2HG Donors1&2&3_20180223_JU_grouped.bed.gz
1.08 MB
Input_R2HG Donors1&2&3_20180223_JU_grouped.bedgraph
4.42 MB
STAR
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed_unmapped.out.mate1.fastq.gz
17.73 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed.bam
121.57 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-ju_trimmed_SJ.out.tab
0 B
iCount group
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped.bed.gz
12.15 MB
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped.bedgraph
55.73 MB
iCount group
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped.bedgraph
20.55 MB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped.bed.gz
4.63 MB
iCount clusters
m1A_Donor1_ALL-3samples_20180223_JU_grouped_clustered.bedgraph
209.57 kB
m1A_Donor1_ALL-3samples_20180223_JU_grouped_clustered.bed.gz
131.43 kB
STAR
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed_unmapped.out.mate1.fastq.gz
25.75 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed.bam
170.48 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-ju_trimmed_SJ.out.tab
0 B
STAR
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed_SJ.out.tab
0 B
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed.bam
149.38 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-ju_trimmed_unmapped.out.mate1.fastq.gz
21.15 MB
STAR
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed_unmapped.out.mate1.fastq.gz
23.11 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed.bam
151.01 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed.bam.bai
20.56 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed_stats.txt
1.78 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_skipped.bam
2.93 kB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_singleAndMulti.bed.gz
10.34 kB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_reads_single.bed.gz
2.04 kB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_single.bed.gz
2.01 kB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_single.bedgraph
6.34 kB
STAR
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped.bam
19.92 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped.bam.bai
2.19 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
8.48 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_SJ.out.tab
88.52 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_stats.txt
1.79 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped.bw
17.56 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped.bam.bai
3.60 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
12.55 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped.bam
61.22 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped.bw
26.65 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_SJ.out.tab
291.76 kB
STAR
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped.bam.bai
3.27 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_SJ.out.tab
913.60 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
18.70 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped.bam
119.84 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped.bw
23.28 kB
STAR
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
23.26 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped.bam.bai
3.52 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped.bw
28.48 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped.bam
198.23 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_SJ.out.tab
1.38 MB
STAR
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
23.93 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_SJ.out.tab
2.51 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped.bam.bai
3.75 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped.bam
250.20 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped.bw
37.03 kB
iCount reads proxy
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped.fastq.gz
136.83 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_fastqc.zip
426.82 kB
STAR
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
16.89 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped.bam
166.60 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped.bam.bai
3.72 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped.bw
31.56 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_SJ.out.tab
1.83 MB
iCount reads proxy
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_fastqc.zip
428.81 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped.fastq.gz
77.89 MB
Upload iCount sample annotation
20180420_JU_iclip_annotation_UN1802_PG_lane20_mySamples.tab.gz
1.12 kB
20180420_JU_iclip_annotation_UN1802_PG_lane20_mySamples.xlsx
17.18 kB
iCount xlsites
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_singleAndMulti.bed.gz
5.73 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_skipped.bam
3.65 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single.bed.gz
1.15 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_reads_single.bed.gz
1.16 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor2-20190327-jufastqgz_unmapped_single.bedgraph
4.56 MB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_reads_single.bed.gz
17.60 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bed.gz
16.15 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bedgraph
258 B
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
20.46 kB
iCount reads proxy
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped.fastq.gz
555.44 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_fastqc.zip
413.94 kB
iCount xlsites
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single.bed.gz
1.75 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_skipped.bam
3.62 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_reads_single.bed.gz
1.77 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_singleAndMulti.bed.gz
8.62 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single.bedgraph
7.11 MB
iCount xlsites
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single.bed.gz
1.22 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_skipped.bam
3.33 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_reads_single.bed.gz
1.23 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_singleAndMulti.bed.gz
6.00 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190327-jufastqgz_unmapped_single.bedgraph
4.89 MB
iCount xlsites
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single.bed.gz
897.49 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_reads_single.bed.gz
906.06 kB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single.bedgraph
3.46 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_singleAndMulti.bed.gz
4.28 MB
input-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_skipped.bam
3.61 kB
iCount xlsites
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_skipped.bam
3.53 kB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_singleAndMulti.bed.gz
6.67 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single.bed.gz
1.37 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single.bedgraph
5.52 MB
input-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_reads_single.bed.gz
1.38 MB
iCount xlsites
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_singleAndMulti.bed.gz
7.60 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_skipped.bam
3.59 kB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single.bed.gz
1.70 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_single.bedgraph
6.95 MB
input-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190327-jufastqgz_unmapped_reads_single.bed.gz
1.72 MB
iCount summary
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_single_summary_type.tsv
410 B
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_single_summary_gene.tsv
6.73 kB
input-cd8-t-cells-rtonly-20190327-jufastqgz_unmapped_single_summary_subtype.tsv
570 B
iCount xlsites
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_skipped.bam
3.54 kB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_singleAndMulti.bed.gz
7.56 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_reads_single.bed.gz
1.63 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single.bedgraph
6.55 MB
input-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190327-jufastqgz_unmapped_single.bed.gz
1.62 MB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
65.41 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bed.gz
48.50 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_reads_single.bed.gz
50.87 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bedgraph
222 B
iCount group
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped.bed.gz
4.01 MB
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped.bedgraph
19.03 MB
iCount annotate
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_grouped_cdna_annotated.bed.gz
3.75 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_grouped_cdna_annotated.bedgraph
12.72 MB
iCount annotate
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_grouped_cdna_annotated.bed.gz
6.47 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_grouped_cdna_annotated.bedgraph
23.01 MB
iCount summary
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_grouped_cdna_summary_type.tsv
433 B
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_grouped_cdna_summary_subtype.tsv
1008 B
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_grouped_cdna_summary_gene.tsv
1.25 MB
iCount annotate
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_grouped_cdna_annotated.bed.gz
4.40 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_grouped_cdna_annotated.bedgraph
15.03 MB
iCount reads proxy
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped.fastq.gz
94.65 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_fastqc.zip
446.05 kB
iCount xlsites
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bed.gz
18.53 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_reads_single.bed.gz
20.01 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
24.06 kB
iCount reads proxy
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped.fastq.gz
132.64 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_fastqc.zip
416.16 kB
STAR
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
84.62 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped.bam.bai
3.79 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped.bam
785.44 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_stats.txt
1.82 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_SJ.out.tab
3.87 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz
35.74 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
45.56 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz
36.61 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph
258 B
Cutadapt (single-end)
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.fastq.gz
554.36 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_fastqc.zip
412.19 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
7.58 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped.bam
52.56 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped.bam.bai
3.48 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_SJ.out.tab
311.63 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped.bw
26.99 kB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped.bam
54.73 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped.bam.bai
3.19 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
9.24 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_SJ.out.tab
291.65 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped.bw
26.12 kB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
14.06 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped.bw
31.72 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped.bam
90.30 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped.bam.bai
3.74 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_SJ.out.tab
431.43 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed.fastq.gz
108.91 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
473.78 kB
STAR
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
47.10 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bam
72.82 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.bw
106.03 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_SJ.out.tab
0 B
iCount annotate
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_annotated.bed.gz
3.67 MB
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_annotated.bedgraph
11.59 MB
iCount annotate
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_annotated.bedgraph
20.55 MB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_annotated.bed.gz
6.21 MB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_single.bed.gz
1.13 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_skipped.bam
3.17 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
2.83 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_single.bedgraph
4.91 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
1.22 MB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
2.83 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_skipped.bam
3.32 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_single.bed.gz
1.17 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_single.bedgraph
5.09 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
1.26 MB
STAR
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped.bam.bai
3.33 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
8.46 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_SJ.out.tab
312.92 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped.bw
26.37 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped.bam
56.41 MB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.fastq.gz
94.60 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_fastqc.zip
474.51 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
2.60 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_skipped.bam
3.51 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single.bed.gz
895.19 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single.bedgraph
3.75 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
974.60 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
8.22 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped.bam.bai
3.24 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_SJ.out.tab
275.23 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_stats.txt
1.80 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped.bam
49.30 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped.bw
25.32 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_skipped.bam
3.11 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single.bed.gz
1.03 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
2.71 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
1.13 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single.bedgraph
4.45 MB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
470.65 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
102.06 MB
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_single.bed.gz
129.86 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
420.81 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_single.bedgraph
507.93 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
139.28 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
2.36 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single.bed.gz
975.73 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
1.04 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single.bedgraph
4.10 MB
Cutadapt (single-end)
demux_NNNNTCGAGNNN_trimmed_trimmed.fastq.gz
15.68 MB
demux_NNNNTCGAGNNN_trimmed_trimmed_fastqc.zip
513.91 kB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_single.bed.gz
1.80 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
3.39 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_single.bedgraph
8.37 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
2.09 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_skipped.bam
4.17 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_single.bed.gz
3.15 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
3.66 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_single.bedgraph
15.01 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
5.69 MB
iCount xlsites
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_single.bed.gz
2.21 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
2.56 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
4.35 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_skipped.bam
3.77 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_single.bedgraph
10.27 MB
iCount xlsites
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
2.86 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single.bed.gz
2.66 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
4.47 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_skipped.bam
3.31 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single.bedgraph
12.70 MB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
8.33 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_skipped.bam
3.17 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single.bed.gz
4.73 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single.bedgraph
22.97 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
5.05 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_skipped.bam
3.25 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
8.15 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
12.73 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single.bed.gz
7.68 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single.bedgraph
37.74 MB
STAR
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped.bam
84.97 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
10.10 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped.bam.bai
3.25 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped.bw
25.79 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
1.26 MB
Cutadapt (single-end)
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.fastq.gz
11.11 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_fastqc.zip
580.24 kB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
83.28 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
481.79 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.fastq.gz
145.81 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_fastqc.zip
449.03 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.fastq.gz
87.98 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_fastqc.zip
450.86 kB
STAR
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped.bam.bai
1.84 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
1.29 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_stats.txt
1.79 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped.bam
4.67 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab
82.64 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-5_unmapped.bw
16.82 kB
iCount RNA-maps
results.tar.gz
1000.19 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip
447.89 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_trimmed.fastq.gz
143.20 MB
Cutadapt (single-end)
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.fastq.gz
588.44 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_fastqc.zip
425.43 kB
Cutadapt (single-end)
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.fastq.gz
48.50 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip
457.56 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.fastq.gz
88.01 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip
440.13 kB
iCount summary
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_single_summary_gene.tsv
802.06 kB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_single_summary_type.tsv
267 B
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
640 B
iCount annotate
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_annotated.bed.gz
3.37 MB
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_annotated.bedgraph
10.61 MB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_singleAndMulti.bed.gz
23.22 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_reads_single.bed.gz
17.13 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_skipped.bam
4.00 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_single.bedgraph
77.11 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-3_unmapped_single.bed.gz
15.68 MB
STAR
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped.bam
180.07 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
16.48 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped.bam.bai
3.25 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_SJ.out.tab
1.37 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped.bw
27.06 kB
STAR
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped.bam.bai
2.95 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped.bam
101.23 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
10.65 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_SJ.out.tab
900.00 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped.bw
21.73 kB
STAR
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_stats.txt
1.82 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped.bam
722.61 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
59.44 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped.bam.bai
3.66 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-4_unmapped_SJ.out.tab
3.84 MB
iCount group
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_grouped_cdna.bed.gz
2.67 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_grouped_cdna.bedgraph
12.72 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_grouped_reads.bed.gz
2.86 MB
STAR
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
24.43 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped.bam
251.57 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped.bam.bai
3.75 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
2.51 MB
iCount group
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_grouped_reads.bed.gz
8.16 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_grouped_cdna.bed.gz
7.69 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_grouped_cdna.bedgraph
37.78 MB
STAR
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz
67.87 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_stats.txt
1.79 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed.bam
365.58 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed.bam.bai
20.56 kB
STAR
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_unmapped.out.mate1.fastq.gz
5.65 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped.bam.bai
2.84 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped.bam
67.65 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped.bw
24.41 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_SJ.out.tab
1.24 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_stats.txt
1.81 kB
iCount summary
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_summary.tsv_summary_subtype.tsv
659 B
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_summary.tsv_summary_type.tsv
277 B
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_summary.tsv_summary_gene.tsv
1.77 MB
iCount summary
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_type.tsv
272 B
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_subtype.tsv
650 B
m6A_CD8_Tcells_R2HG-treated Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_gene.tsv
1.15 MB
K-mers
kmer_frequency_utr3.tsv
5.71 kB
positional_distribution_genome.tsv
548.56 kB
kmer_frequency_intron.tsv
5.77 kB
positional_distribution_ncRNA.tsv
508.80 kB
other_exon region.png
258.64 kB
positional_distribution_intron.tsv
241.59 kB
kmer_frequency_ncRNA.tsv
5.82 kB
positional_distribution_utr3.tsv
333.28 kB
intron region.png
224.25 kB
ncRNA region.png
291.05 kB
utr3 region.png
269.88 kB
genome region.png
323.33 kB
positional_distribution_other_exon.tsv
438.28 kB
kmer_frequency_genome.tsv
5.85 kB
kmer_frequency_other_exon.tsv
5.88 kB
STAR
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
10.46 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam
17.25 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bam.bai
20.35 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.bw
104.97 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.14 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
iCount reads proxy
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped.fastq.gz
34.67 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_fastqc.zip
479.95 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
476 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.31 MB
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
472 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.12 MB
STAR
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped.bam.bai
3.66 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_unmapped.out.mate1.fastq.gz
59.45 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped.bam
722.60 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_SJ.out.tab
3.84 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_stats.txt
1.82 kB
STAR
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
144.69 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam
215.02 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bw
105.94 kB
STAR
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bam
162.92 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.bw
105.94 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
107.47 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_stats.txt
1.78 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_skipped.bam
3.09 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single.bed.gz
1.58 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single.bedgraph
6.95 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
1.72 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
3.48 MB
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_single.bed.gz
128.11 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_single.bedgraph
502.43 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
137.56 kB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
251.33 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single.bed.gz
970.94 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single.bedgraph
4.08 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
1.04 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
2.03 MB
FASTQ file (single-end)
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju.fastq.gz
135.58 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_fastqc.zip
430.29 kB
FASTQ file (single-end)
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_fastqc.zip
439.14 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju.fastq.gz
77.16 MB
FASTQ file (single-end)
m6a-cd8-t-cells-xl-polya-20190312-ju.fastq.gz
549.58 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_fastqc.zip
408.99 kB
Cutadapt (single-end)
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed.fastq.gz
385.68 MB
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed_fastqc.zip
479.23 kB
STAR
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
1.38 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped.bam.bai
3.52 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped.bam
199.92 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped.bw
28.48 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
23.93 MB
Cutadapt (single-end)
demux_NNNNAGTCCNNN_trimmed_trimmed.fastq.gz
256.69 MB
demux_NNNNAGTCCNNN_trimmed_trimmed_fastqc.zip
484.01 kB
iCount summary
demux_NNNNAGTCCNNN_trimmed_trimmed_single_summary_type.tsv
268 B
demux_NNNNAGTCCNNN_trimmed_trimmed_single_summary_gene.tsv
1.02 MB
demux_NNNNAGTCCNNN_trimmed_trimmed_single_summary_subtype.tsv
646 B
Cutadapt (single-end)
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed.fastq.gz
26.21 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed_fastqc.zip
468.09 kB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_skipped.bam
4.16 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
5.33 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_single.bedgraph
14.99 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
3.65 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-4_unmapped_single.bed.gz
3.14 MB
iCount xlsites
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_skipped.bam
3.77 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
2.55 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
3.78 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_single.bed.gz
2.19 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_single.bedgraph
10.22 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_skipped.bam
3.25 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single.bed.gz
7.66 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
11.97 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
8.13 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single.bedgraph
37.69 MB
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.16 MB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju.fastq.gz
83.19 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_fastqc.zip
487.86 kB
iCount xlsites
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single.bed.gz
2.65 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
2.85 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
4.06 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_skipped.bam
3.31 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single.bedgraph
12.67 MB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_singleAndMulti.bed.gz
7.63 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_skipped.bam
3.17 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_reads_single.bed.gz
5.03 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single.bed.gz
4.71 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single.bedgraph
22.90 MB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.14 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
471 B
iCount summary
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.09 MB
iCount summary
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
473 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.31 MB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_fastqc.zip
496.09 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju.fastq.gz
85.98 MB
Cutadapt (single-end)
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed_fastqc.zip
483.28 kB
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed.fastq.gz
374.81 MB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_fastqc.zip
476.65 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju.fastq.gz
137.75 MB
iCount reads proxy
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_fastqc.zip
493.85 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped.fastq.gz
25.92 MB
iCount summary
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.12 MB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
1.02 kB
FASTQ file (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju.fastq.gz
74.21 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_fastqc.zip
494.61 kB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
467 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.08 MB
FASTQ file (single-end)
m6a-cd8-t-cells-igg-polya-20190312-ju_fastqc.zip
523.45 kB
m6a-cd8-t-cells-igg-polya-20190312-ju.fastq.gz
2.72 MB
iCount reads proxy
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped.fastq.gz
2.58 MB
m6a-cd8-t-cells-igg-polya-20190312-jufastqgz-4_unmapped_fastqc.zip
527.70 kB
iCount summary
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
466 B
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.24 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
976 B
iCount summary
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.33 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
980 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
469 B
iCount summary
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.69 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
985 B
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
475 B
iCount summary
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.51 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
466 B
K-mers
kmer_frequency_intron.tsv
5.24 kB
positional_distribution_ncRNA.tsv
453.31 kB
positional_distribution_intron.tsv
168.40 kB
ncRNA region.png
307.75 kB
kmer_frequency_utr3.tsv
5.48 kB
intron region.png
226.75 kB
positional_distribution_utr3.tsv
232.00 kB
other_exon region.png
296.09 kB
kmer_frequency_other_exon.tsv
5.85 kB
positional_distribution_genome.tsv
521.41 kB
positional_distribution_other_exon.tsv
348.75 kB
kmer_frequency_genome.tsv
5.83 kB
genome region.png
315.71 kB
utr3 region.png
284.85 kB
kmer_frequency_ncRNA.tsv
5.88 kB
STAR
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz
67.60 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed.bam
352.12 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed.bam.bai
20.56 kB
K-mers
kmer_frequency_ncRNA.tsv
5.89 kB
kmer_frequency_intron.tsv
5.11 kB
positional_distribution_intron.tsv
163.98 kB
intron region.png
200.07 kB
other_exon region.png
241.49 kB
positional_distribution_ncRNA.tsv
457.71 kB
utr3 region.png
260.07 kB
ncRNA region.png
295.09 kB
positional_distribution_utr3.tsv
230.36 kB
kmer_frequency_other_exon.tsv
5.79 kB
kmer_frequency_genome.tsv
5.82 kB
positional_distribution_other_exon.tsv
313.34 kB
genome region.png
317.49 kB
kmer_frequency_utr3.tsv
5.34 kB
positional_distribution_genome.tsv
521.94 kB
K-mers
other_exon region.png
183.31 kB
kmer_frequency_intron.tsv
916 B
kmer_frequency_other_exon.tsv
3.01 kB
kmer_frequency_genome.tsv
4.38 kB
positional_distribution_genome.tsv
144.00 kB
positional_distribution_intron.tsv
64.74 kB
utr3 region.png
137.74 kB
kmer_frequency_utr3.tsv
1.16 kB
genome region.png
191.39 kB
intron region.png
120.20 kB
positional_distribution_utr3.tsv
66.20 kB
positional_distribution_other_exon.tsv
118.11 kB
K-mers
kmer_frequency_ncRNA.tsv
4.95 kB
kmer_frequency_utr3.tsv
5.78 kB
positional_distribution_intron.tsv
169.26 kB
positional_distribution_genome.tsv
565.31 kB
ncRNA region.png
186.68 kB
intron region.png
210.05 kB
other_exon region.png
220.15 kB
positional_distribution_utr3.tsv
517.05 kB
kmer_frequency_intron.tsv
4.98 kB
utr3 region.png
254.28 kB
positional_distribution_ncRNA.tsv
187.83 kB
kmer_frequency_other_exon.tsv
5.81 kB
kmer_frequency_genome.tsv
5.88 kB
genome region.png
281.81 kB
positional_distribution_other_exon.tsv
555.55 kB
K-mers
kmer_frequency_ncRNA.tsv
5.89 kB
kmer_frequency_intron.tsv
5.88 kB
other_exon region.png
150.57 kB
positional_distribution_ncRNA.tsv
495.79 kB
positional_distribution_intron.tsv
361.25 kB
intron region.png
300.15 kB
ncRNA region.png
272.50 kB
kmer_frequency_utr3.tsv
5.76 kB
kmer_frequency_genome.tsv
5.90 kB
positional_distribution_genome.tsv
567.64 kB
positional_distribution_utr3.tsv
562.33 kB
utr3 region.png
207.39 kB
kmer_frequency_other_exon.tsv
5.81 kB
genome region.png
184.91 kB
positional_distribution_other_exon.tsv
562.03 kB
K-mers
positional_distribution_intron.tsv
209.29 kB
kmer_frequency_intron.tsv
5.45 kB
other_exon region.png
197.86 kB
positional_distribution_ncRNA.tsv
313.30 kB
kmer_frequency_ncRNA.tsv
5.73 kB
kmer_frequency_utr3.tsv
5.89 kB
ncRNA region.png
289.88 kB
intron region.png
288.20 kB
kmer_frequency_other_exon.tsv
5.90 kB
positional_distribution_genome.tsv
570.43 kB
positional_distribution_utr3.tsv
545.28 kB
positional_distribution_other_exon.tsv
569.82 kB
utr3 region.png
253.81 kB
kmer_frequency_genome.tsv
5.84 kB
genome region.png
264.45 kB
K-mers
positional_distribution_intron.tsv
256.55 kB
kmer_frequency_intron.tsv
5.70 kB
ncRNA region.png
291.29 kB
positional_distribution_ncRNA.tsv
368.10 kB
positional_distribution_utr3.tsv
565.32 kB
kmer_frequency_ncRNA.tsv
5.88 kB
intron region.png
264.38 kB
other_exon region.png
177.96 kB
kmer_frequency_other_exon.tsv
5.83 kB
positional_distribution_other_exon.tsv
566.66 kB
genome region.png
264.77 kB
utr3 region.png
241.21 kB
kmer_frequency_utr3.tsv
5.89 kB
kmer_frequency_genome.tsv
5.81 kB
positional_distribution_genome.tsv
555.04 kB
K-mers
other_exon region.png
139.32 kB
positional_distribution_intron.tsv
533.17 kB
intron region.png
256.65 kB
ncRNA region.png
270.12 kB
kmer_frequency_genome.tsv
5.79 kB
kmer_frequency_intron.tsv
5.84 kB
kmer_frequency_ncRNA.tsv
5.85 kB
kmer_frequency_utr3.tsv
5.90 kB
positional_distribution_ncRNA.tsv
554.71 kB
positional_distribution_genome.tsv
562.00 kB
positional_distribution_utr3.tsv
567.06 kB
utr3 region.png
210.33 kB
kmer_frequency_other_exon.tsv
5.87 kB
positional_distribution_other_exon.tsv
573.48 kB
genome region.png
147.07 kB
iCount annotate
Input_Vehicle Donors1&2&3_20180223_JU_grouped_annotated.bedgraph
3.62 MB
Input_Vehicle Donors1&2&3_20180223_JU_grouped_annotated.bed.gz
1.28 MB
Cutadapt (single-end)
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed.fastq.gz
19.53 MB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed_fastqc.zip
534.68 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
70.72 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
134.87 kB
m6a-cd8-t-cells-ccr7neg-roneg-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
72.84 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_reads_single.bed.gz
70.03 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bed.gz
67.74 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_singleAndMulti.bed.gz
121.80 kB
iCount summary
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single_summary_type.tsv
464 B
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-4_unmapped_single_summary_gene.tsv
1.33 MB
iCount xlsites
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_single.bed.gz
1.35 MB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_single.bedgraph
5.79 MB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_skipped.bam
3.96 kB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
3.81 MB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
87.95 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
487.94 kB
iCount xlsites
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
69.88 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
130.71 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
72.26 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
iCount summary
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_single_summary_type.tsv
267 B
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
637 B
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_single_summary_gene.tsv
837.23 kB
iCount xlsites
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_skipped.bam
4.41 kB
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_single.bed.gz
2.19 MB
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
6.14 MB
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_single.bedgraph
9.54 MB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
471.86 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.fastq.gz
141.20 MB
Cutadapt (single-end)
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed.fastq.gz
14.32 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_fastqc.zip
502.98 kB
iCount xlsites
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed_single.bed.gz
76.31 kB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed_single.bedgraph
240 B
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed_singleAndMulti.bed.gz
138.26 kB
STAR
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
75.72 MB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed.bam
414.84 MB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed_SJ.out.tab
0 B
Cutadapt (single-end)
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed.fastq.gz
253.51 MB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-ju_trimmed_fastqc.zip
478.39 kB
iCount reads proxy
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped.fastq.gz
103.96 MB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-jufastqgz_unmapped_fastqc.zip
491.83 kB
iCount xlsites
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed_single.bed.gz
72.29 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed_singleAndMulti.bed.gz
138.03 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed_single.bedgraph
240 B
STAR
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
109.19 MB
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed_stats.txt
1.79 kB
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed.bam
541.16 MB
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bed.gz
11.34 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
16.99 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bedgraph
222 B
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_reads_single.bed.gz
11.68 kB
STAR
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed.bam
628.87 MB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed_stats.txt
1.79 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-r2hg-treated-donor1-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
103.96 MB
Cutadapt (single-end)
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed.fastq.gz
329.23 MB
m6a-cd8-tcells-naive-cd8-donor3-20180420-ju_trimmed_fastqc.zip
469.90 kB
iCount xlsites
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_skipped.bam
3.57 kB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_single.bed.gz
689.33 kB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_single.bedgraph
2.78 MB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
1.98 MB
iCount reads proxy
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_fastqc.zip
488.78 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped.fastq.gz
27.87 MB
Cutadapt (single-end)
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_fastqc.zip
478.60 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.fastq.gz
75.82 MB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
63.91 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
112.14 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
66.39 kB
STAR
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped.bam.bai
3.53 MB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
22.50 MB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped.bam
116.68 MB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped.bw
28.85 kB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-jufastqgz_unmapped_SJ.out.tab
246.53 kB
iCount reads proxy
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped.fastq.gz
87.13 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_fastqc.zip
453.26 kB
iCount summary
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_single_summary_type.tsv
268 B
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
638 B
m6a-cd8-tcells-vehicle-treated-donor2-20180420-jufastqgz_unmapped_single_summary_gene.tsv
823.33 kB
iCount xlsites
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bed.gz
80.15 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_singleAndMulti.bed.gz
152.96 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_reads_single.bed.gz
83.18 kB
iCount xlsites
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_single.bed.gz
700.79 kB
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_skipped.bam
3.08 kB
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_single.bedgraph
2.78 MB
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
2.27 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_single.bed.gz
36.26 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
64.03 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_single.bedgraph
258 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_reads_single.bed.gz
38.86 kB
iCount reads proxy
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_fastqc.zip
509.95 kB
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped.fastq.gz
64.64 MB
iCount xlsites
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bed.gz
6.87 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
7.44 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_reads_single.bed.gz
7.20 kB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_single.bedgraph
222 B
iCount annotate
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_annotated.bed.gz
1.19 MB
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_annotated.bedgraph
3.34 MB
Cutadapt (single-end)
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed.fastq.gz
198.31 MB
m6a-cd8-tcells-r2hg-treated-donor2-20180420-ju_trimmed_fastqc.zip
479.37 kB
Cutadapt (single-end)
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed.fastq.gz
39.70 MB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed_fastqc.zip
468.69 kB
iCount xlsites
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed_single.bedgraph
246 B
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed_single.bed.gz
68.56 kB
m6a-cd8-tcells-vehicle-treated-donor2-20180420-ju_trimmed_singleAndMulti.bed.gz
121.37 kB
iCount reads proxy
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped.fastq.gz
142.44 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_fastqc.zip
445.90 kB
Cutadapt (single-end)
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed.fastq.gz
18.54 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed_fastqc.zip
523.33 kB
iCount reads proxy
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped.fastq.gz
87.91 MB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_fastqc.zip
554.50 kB
iCount xlsites
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
47.18 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz
26.90 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz
26.32 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph
256 B
Cutadapt (single-end)
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed.fastq.gz
322.32 MB
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed_fastqc.zip
481.30 kB
iCount xlsites
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed_singleAndMulti.bed.gz
140.02 kB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed_single.bed.gz
76.28 kB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed_single.bedgraph
240 B
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed_skipped.bam
3.97 kB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bed.gz
48.46 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
65.40 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_single.bedgraph
222 B
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_reads_single.bed.gz
50.84 kB
STAR
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed_SJ.out.tab
5.66 kB
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
91.22 MB
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed.bam
529.76 MB
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
Cutadapt (single-end)
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed.fastq.gz
22.45 MB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed_fastqc.zip
461.98 kB
iCount xlsites
demux_NNNNCAGGGNNN_trimmed_trimmed_skipped.bam
7.93 kB
demux_NNNNCAGGGNNN_trimmed_trimmed_single.bed.gz
477.84 kB
demux_NNNNCAGGGNNN_trimmed_trimmed_single.bedgraph
1.79 MB
demux_NNNNCAGGGNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.36 MB
Cutadapt (single-end)
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed.fastq.gz
188.71 MB
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed_fastqc.zip
481.35 kB
iCount peaks
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_scores.tsv.gz
10.05 MB
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_peaks.bed.gz
2.01 MB
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_peaks.bedgraph
8.08 MB
iCount peaks
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_scores.tsv.gz
831.02 kB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_peaks.bedgraph
246.54 kB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_peaks.bed.gz
105.94 kB
iCount annotate
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_annotated.bedgraph
4.21 MB
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_annotated.bed.gz
1.47 MB
Cutadapt (single-end)
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed.fastq.gz
196.89 MB
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed_fastqc.zip
481.60 kB
Cutadapt (single-end)
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.fastq.gz
554.36 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_fastqc.zip
412.19 kB
iCount summary
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_single_summary_subtype.tsv
642 B
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_single_summary_type.tsv
264 B
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_single_summary_gene.tsv
710.00 kB
STAR
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped.bam.bai
3.27 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped.bam
121.10 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
913.60 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
19.26 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped.bw
23.28 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.fastq.gz
136.70 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_fastqc.zip
425.41 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_fastqc.zip
435.61 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.fastq.gz
77.57 MB
Cutadapt (single-end)
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed.fastq.gz
73.95 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip
426.27 kB
Cutadapt (single-end)
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.fastq.gz
41.13 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip
448.06 kB
Cutadapt (single-end)
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed.fastq.gz
17.58 MB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_fastqc.zip
461.66 kB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
23.34 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam
122.17 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed.bam.bai
20.49 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor2-20190312-ju_trimmed_stats.txt
1.78 kB
STAR
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
24.08 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed.bam
136.46 MB
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7neg-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
STAR
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
40.71 MB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-roneg-totalrna-donor1-20190312-ju_trimmed.bam
218.70 MB
STAR
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
22.90 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-ju_trimmed.bam
115.53 MB
iCount annotate
m1A_R2HG Donor1_20180223_JU_grouped_annotated.bed.gz
619.54 kB
m1A_R2HG Donor1_20180223_JU_grouped_annotated.bedgraph
1.74 MB
STAR
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
21.91 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped.bam
177.40 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped.bam.bai
3.60 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped.bw
26.81 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
973.72 kB
FASTQ file (single-end)
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju.fastq.gz
144.22 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-ju_fastqc.zip
448.33 kB
iCount annotate
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_annotated.bed.gz
1.10 MB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_annotated.bedgraph
3.06 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_single.bed.gz
36.25 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
64.05 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_single.bedgraph
258 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_reads_single.bed.gz
38.84 kB
Cutadapt (single-end)
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed.fastq.gz
193.05 MB
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed_fastqc.zip
483.56 kB
Cutadapt (single-end)
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed.fastq.gz
21.00 MB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed_fastqc.zip
534.71 kB
Cutadapt (single-end)
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed.fastq.gz
256.69 MB
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed_fastqc.zip
484.33 kB
STAR
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped.bam
168.12 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped.bam.bai
3.72 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_unmapped.out.mate1.fastq.gz
17.59 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_stats.txt
1.81 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped.bw
31.56 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_SJ.out.tab
1.83 MB
iCount reads proxy
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped.fastq.gz
145.36 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
440.41 kB
Cutadapt (single-end)
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed.fastq.gz
13.07 MB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_fastqc.zip
457.92 kB
Cutadapt (single-end)
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed.fastq.gz
15.68 MB
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed_fastqc.zip
514.23 kB
Cutadapt (single-end)
demux_NNNNATACGNNN_trimmed_trimmed_trimmed_fastqc.zip
479.84 kB
demux_NNNNATACGNNN_trimmed_trimmed_trimmed.fastq.gz
243.11 MB
iCount reads proxy
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped.fastq.gz
87.56 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
452.73 kB
iCount xlsites
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_skipped.bam
4.00 kB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_single.bed.gz
15.66 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_single.bedgraph
77.05 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_singleAndMulti.bed.gz
22.32 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_reads_single.bed.gz
17.12 MB
Cutadapt (single-end)
demux_NNNNCATACNNN_trimmed_trimmed_trimmed.fastq.gz
453.40 MB
demux_NNNNCATACNNN_trimmed_trimmed_trimmed_fastqc.zip
489.51 kB
Cutadapt (single-end)
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed.fastq.gz
327.15 MB
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed_fastqc.zip
478.42 kB
iCount peaks
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_scores.tsv.gz
831.02 kB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_peaks.bed.gz
105.94 kB
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_peaks.bedgraph
246.54 kB
iCount summary
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_subtype.tsv
641 B
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_gene.tsv
917.76 kB
m6A_CD8_Tcells_R2HG-treated Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_type.tsv
267 B
FASTQ file (single-end)
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju.fastq.gz
93.73 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_fastqc.zip
451.92 kB
Cutadapt (single-end)
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed.fastq.gz
2.68 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_trimmed_fastqc.zip
525.72 kB
FASTQ file (single-end)
m6a-cd8-t-cells-igg-polya-20190312-ju.fastq.gz
2.72 MB
m6a-cd8-t-cells-igg-polya-20190312-ju_fastqc.zip
523.45 kB
FASTQ file (single-end)
m6a-cd8-t-cells-xl-polya-20190312-ju.fastq.gz
549.58 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_fastqc.zip
408.99 kB
STAR
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
555.44 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bam
769.42 MB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed.bw
105.35 kB
m6a-cd8-t-cells-xl-polya-20190312-ju_trimmed_stats.txt
1.78 kB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
45.62 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bed.gz
25.34 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_reads_single.bed.gz
27.05 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_single.bedgraph
258 B
iCount reads proxy
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped.fastq.gz
108.07 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
455.11 kB
iCount reads proxy
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped.fastq.gz
555.44 MB
m6a-cd8-t-cells-xl-polya-20190312-jufastqgz-5_unmapped_fastqc.zip
413.88 kB
iCount reads proxy
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped.fastq.gz
86.45 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
447.79 kB
STAR
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
129.28 MB
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed.bam
614.97 MB
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed_SJ.out.tab
4.68 kB
STAR
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
3.03 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed.bam
27.13 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed_stats.txt
1.79 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed.bw
106.48 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed_SJ.out.tab
1.57 kB
iCount summary
demux_NNNNCACAGCGTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNCACAGCGTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
demux_NNNNCACAGCGTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
595.47 kB
iCount xlsites
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_skipped.bam
3.25 kB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
5.89 MB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_single.bedgraph
8.19 MB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_single.bed.gz
1.91 MB
STAR
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
5.02 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed.bam
51.33 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed_SJ.out.tab
3.37 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed.bw
106.64 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
2.88 MB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed.bam
24.71 MB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed.bw
106.42 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed_SJ.out.tab
1.51 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed_stats.txt
1.79 kB
STAR
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed_SJ.out.tab
6.60 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
79.55 MB
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed.bam
417.21 MB
STAR
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed.bam
35.67 MB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed_SJ.out.tab
2.07 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed_stats.txt
1.79 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed.bw
106.44 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
6.04 MB
iCount summary
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_type.tsv
270 B
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_subtype.tsv
644 B
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_gene.tsv
1.01 MB
iCount xlsites
demux_NNNNGATCGNNN_trimmed_single.bedgraph
1.74 MB
demux_NNNNGATCGNNN_trimmed_skipped.bam
8.03 kB
demux_NNNNGATCGNNN_trimmed_single.bed.gz
465.08 kB
demux_NNNNGATCGNNN_trimmed_singleAndMulti.bed.gz
2.40 MB
Cutadapt (single-end)
demux_NNNNGTTTCATTNNNNN_trimmed.fastq.gz
18.54 MB
demux_NNNNGTTTCATTNNNNN_trimmed_fastqc.zip
449.26 kB
iCount summary
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_type.tsv
268 B
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_subtype.tsv
644 B
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_gene.tsv
851.01 kB
iCount annotate
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_annotated.bed.gz
13.48 MB
m6A_CD8_Tcells_ALL-12-samples_20180420_JU_grouped_annotated.bedgraph
55.73 MB
iCount peaks
m1A_R2HG Donor1_20180223_JU_grouped_peaks.bed.gz
102.46 kB
m1A_R2HG Donor1_20180223_JU_grouped_peaks.bedgraph
225.80 kB
m1A_R2HG Donor1_20180223_JU_grouped_scores.tsv.gz
532.11 kB
STAR
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed.bam
42.10 MB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
4.68 MB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed.bw
106.51 kB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed_SJ.out.tab
2.82 kB
iCount xlsites
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bed.gz
29.75 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
55.28 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_single.bedgraph
262 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_reads_single.bed.gz
31.56 kB
STAR
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
112.34 MB
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed.bam
634.08 MB
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed_SJ.out.tab
5.92 kB
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
STAR
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
4.72 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed.bam
42.04 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed_SJ.out.tab
2.83 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed.bw
106.58 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
iCount xlsites
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_skipped.bam
4.47 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_single.bed.gz
2.25 MB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
6.30 MB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_single.bedgraph
9.94 MB
STAR
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
3.50 MB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed.bam
33.34 MB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed_SJ.out.tab
2.48 kB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed.bw
106.43 kB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed_stats.txt
1.79 kB
STAR
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
3.61 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_stats.txt
1.79 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed.bam
26.45 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed.bw
106.35 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_SJ.out.tab
1.41 kB
iCount summary
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_type.tsv
268 B
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_subtype.tsv
644 B
m6A_CD8_Tcells_R2HG-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_gene.tsv
851.01 kB
FASTQ file (single-end)
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju.fastq.gz
49.51 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_fastqc.zip
463.56 kB
STAR
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed.bam
77.15 MB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed_SJ.out.tab
4.69 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed.bw
106.73 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
7.43 MB
iCount peaks
m1A_Donor1_ALL-3samples_20180223_JU_grouped_peaks.bed.gz
193.42 kB
m1A_Donor1_ALL-3samples_20180223_JU_grouped_peaks.bedgraph
454.01 kB
m1A_Donor1_ALL-3samples_20180223_JU_grouped_scores.tsv.gz
1.02 MB
iCount peaks
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_peaks.bedgraph
432.48 kB
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_peaks.bed.gz
163.11 kB
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_scores.tsv.gz
1.44 MB
iCount summary
demux_NNNNGGAGCNNN_trimmed_single_summary.tsv_summary_type.tsv
269 B
demux_NNNNGGAGCNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.11 MB
demux_NNNNGGAGCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
650 B
STAR
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
6.34 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed_stats.txt
1.79 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed.bam
33.06 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed_SJ.out.tab
1.46 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed.bw
106.36 kB
STAR
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
65.98 MB
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed.bam
300.42 MB
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed_SJ.out.tab
2.03 kB
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz
43.21 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz
42.36 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph
258 B
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
80.53 kB
iCount summary
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_type.tsv
269 B
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_subtype.tsv
642 B
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_gene.tsv
962.83 kB
iCount reads proxy
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped.fastq.gz
142.97 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_fastqc.zip
442.31 kB
STAR
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
3.57 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed.bam
26.39 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_stats.txt
1.79 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_SJ.out.tab
1.41 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed.bw
106.35 kB
STAR
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
59.57 MB
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed.bam
319.62 MB
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed_SJ.out.tab
4.58 kB
STAR
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
7.18 MB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed_stats.txt
1.79 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed_SJ.out.tab
2.17 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed.bam
36.58 MB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed.bw
106.31 kB
iCount summary
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_subtype.tsv
651 B
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_type.tsv
270 B
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_gene.tsv
1.34 MB
STAR
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
9.12 MB
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed_stats.txt
1.79 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed_SJ.out.tab
1.43 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed.bw
105.53 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed.bam
21.37 MB
STAR
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
57.91 MB
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed.bam
311.93 MB
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed_SJ.out.tab
3.71 kB
iCount summary
demux_NNNNTGTGGNNN_trimmed_single_summary.tsv_summary_gene.tsv
588.92 kB
demux_NNNNTGTGGNNN_trimmed_single_summary.tsv_summary_type.tsv
268 B
demux_NNNNTGTGGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
646 B
STAR
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed.bam
422.96 MB
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
77.31 MB
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed_SJ.out.tab
5.64 kB
STAR
demux_NNNNATACGNNN_trimmed_trimmed_trimmed_unmapped.out.mate1.fastq.gz
69.07 MB
demux_NNNNATACGNNN_trimmed_trimmed_trimmed.bam.bai
20.56 kB
demux_NNNNATACGNNN_trimmed_trimmed_trimmed.bam
389.08 MB
demux_NNNNATACGNNN_trimmed_trimmed_trimmed_SJ.out.tab
3.66 kB
demux_NNNNATACGNNN_trimmed_trimmed_trimmed_stats.txt
1.80 kB
iCount summary
demux_NNNNGATCGNNN_trimmed_single_summary.tsv_summary_type.tsv
269 B
demux_NNNNGATCGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
647 B
demux_NNNNGATCGNNN_trimmed_single_summary.tsv_summary_gene.tsv
643.06 kB
iCount reads proxy
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_fastqc.zip
516.75 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped.fastq.gz
138.98 MB
iCount summary
Input_Vehicle Donors1&2&3_20180223_JU_grouped_summary.tsv_summary_subtype.tsv
644 B
Input_Vehicle Donors1&2&3_20180223_JU_grouped_summary.tsv_summary_gene.tsv
929.91 kB
Input_Vehicle Donors1&2&3_20180223_JU_grouped_summary.tsv_summary_type.tsv
267 B
Cutadapt (single-end)
demux_NNNNTCATCNNN_trimmed.fastq.gz
322.32 MB
demux_NNNNTCATCNNN_trimmed_fastqc.zip
430.95 kB
iCount xlsites
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
134.24 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed_single.bedgraph
206 B
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed_single.bed.gz
75.70 kB
iCount xlsites
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed_single.bed.gz
89.07 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
160.53 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_trimmed_single.bedgraph
206 B
iCount xlsites
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
127.54 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed_single.bed.gz
72.99 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_trimmed_single.bedgraph
212 B
iCount xlsites
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed_single.bed.gz
76.83 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed_single.bedgraph
212 B
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
136.52 kB
iCount xlsites
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
164.11 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed_single.bed.gz
77.70 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed_single.bedgraph
240 B
iCount xlsites
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed_single.bed.gz
86.29 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
154.64 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_trimmed_single.bedgraph
212 B
iCount summary
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_gene.tsv
1000.07 kB
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_type.tsv
271 B
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_subtype.tsv
647 B
iCount xlsites
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed_single.bed.gz
78.93 kB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
135.72 kB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_trimmed_single.bedgraph
206 B
iCount xlsites
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
129.35 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_single.bedgraph
206 B
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_single.bed.gz
73.04 kB
iCount xlsites
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
173.69 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed_single.bedgraph
206 B
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_trimmed_single.bed.gz
95.11 kB
iCount xlsites
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
135.98 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed_single.bedgraph
208 B
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_trimmed_single.bed.gz
75.10 kB
iCount xlsites
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed_single.bed.gz
84.14 kB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
146.58 kB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed_single.bedgraph
206 B
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
iCount xlsites
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
162.92 kB
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed_single.bedgraph
240 B
demux_NNNNCACAGNNN_trimmed_trimmed_trimmed_single.bed.gz
72.67 kB
iCount xlsites
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed_single.bed.gz
74.83 kB
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed_single.bedgraph
234 B
demux_NNNNGTTTCNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
162.61 kB
iCount xlsites
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_single.bedgraph
206 B
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_single.bed.gz
73.06 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
129.32 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
iCount xlsites
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
125.11 kB
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed_single.bedgraph
234 B
demux_NNNNGATCGNNN_trimmed_trimmed_trimmed_single.bed.gz
60.57 kB
iCount xlsites
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed_single.bedgraph
208 B
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed_single.bed.gz
78.13 kB
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
139.67 kB
iCount xlsites
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
92.39 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed_single.bedgraph
240 B
demux_NNNNTCGAGNNN_trimmed_trimmed_trimmed_single.bed.gz
30.25 kB
iCount xlsites
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed_single.bed.gz
67.46 kB
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
139.69 kB
demux_NNNNCCTGCNNN_trimmed_trimmed_trimmed_single.bedgraph
240 B
iCount xlsites
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed_single.bedgraph
240 B
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
164.46 kB
demux_NNNNTCATCNNN_trimmed_trimmed_trimmed_single.bed.gz
77.01 kB
Cutadapt (single-end)
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed_fastqc.zip
459.08 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-ju_trimmed.fastq.gz
109.05 MB
iCount xlsites
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed_single.bed.gz
69.39 kB
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed_single.bedgraph
246 B
demux_NNNNAACTCNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
142.93 kB
iCount xlsites
demux_NNNNATACGNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
139.42 kB
demux_NNNNATACGNNN_trimmed_trimmed_trimmed_single.bed.gz
66.20 kB
demux_NNNNATACGNNN_trimmed_trimmed_trimmed_single.bedgraph
246 B
demux_NNNNATACGNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
iCount xlsites
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
161.42 kB
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed_single.bed.gz
78.32 kB
demux_NNNNAGTCCNNN_trimmed_trimmed_trimmed_single.bedgraph
246 B
iCount xlsites
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed_skipped.bam
3.96 kB
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed_single.bed.gz
75.92 kB
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed_single.bedgraph
234 B
demux_NNNNGGAGCNNN_trimmed_trimmed_trimmed_singleAndMulti.bed.gz
158.29 kB
Cutadapt (single-end)
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed_fastqc.zip
460.36 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-ju_trimmed.fastq.gz
48.80 MB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
3.39 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_skipped.bam
2.93 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
1.80 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
2.09 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
8.37 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_skipped.bam
4.18 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
3.15 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
3.66 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
15.01 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
5.69 MB
iCount xlsites
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_skipped.bam
3.77 kB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
4.35 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
2.21 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
10.27 MB
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
2.56 MB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
8.33 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
4.73 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
22.98 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
5.05 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_skipped.bam
3.17 kB
iCount xlsites
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
2.66 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
2.86 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
12.70 MB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_skipped.bam
3.31 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
4.47 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_skipped.bam
3.25 kB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_singleAndMulti.bed.gz
12.73 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_reads_single.bed.gz
8.15 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single.bedgraph
37.74 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single.bed.gz
7.68 MB
iCount xlsites
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_skipped.bam
4.88 kB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_single.bed.gz
898.17 kB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
2.64 MB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-jufastqgz_unmapped_single.bedgraph
3.66 MB
iCount summary
demux_NNNNCAGGGNNN_trimmed_trimmed_single_summary_gene.tsv
673.14 kB
demux_NNNNCAGGGNNN_trimmed_trimmed_single_summary_type.tsv
267 B
demux_NNNNCAGGGNNN_trimmed_trimmed_single_summary_subtype.tsv
647 B
iCount summary
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single_summary_type.tsv
266 B
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single_summary_subtype.tsv
636 B
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single_summary_gene.tsv
706.61 kB
iCount summary
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
986 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.42 MB
iCount xlsites
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_single.bed.gz
1.36 MB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_skipped.bam
3.35 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
3.77 MB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_single.bedgraph
5.93 MB
iCount summary
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
471 B
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
1.03 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.52 MB
iCount summary
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single_summary_type.tsv
476 B
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single_summary_gene.tsv
1.68 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-6_unmapped_single_summary_subtype.tsv
989 B
K-mers
other_exon region.png
197.52 kB
kmer_frequency_intron.tsv
5.45 kB
positional_distribution_intron.tsv
209.29 kB
kmer_frequency_ncRNA.tsv
5.73 kB
intron region.png
288.20 kB
positional_distribution_ncRNA.tsv
313.30 kB
ncRNA region.png
287.10 kB
kmer_frequency_utr3.tsv
5.89 kB
positional_distribution_utr3.tsv
546.53 kB
utr3 region.png
253.54 kB
kmer_frequency_genome.tsv
5.83 kB
genome region.png
264.52 kB
positional_distribution_genome.tsv
570.39 kB
kmer_frequency_other_exon.tsv
5.90 kB
positional_distribution_other_exon.tsv
570.42 kB
K-mers
kmer_frequency_ncRNA.tsv
5.72 kB
positional_distribution_intron.tsv
208.78 kB
ncRNA region.png
241.70 kB
other_exon region.png
234.79 kB
kmer_frequency_intron.tsv
5.39 kB
positional_distribution_ncRNA.tsv
308.62 kB
intron region.png
210.94 kB
kmer_frequency_utr3.tsv
5.78 kB
utr3 region.png
301.68 kB
positional_distribution_other_exon.tsv
556.45 kB
kmer_frequency_genome.tsv
5.89 kB
positional_distribution_genome.tsv
567.69 kB
positional_distribution_utr3.tsv
520.07 kB
kmer_frequency_other_exon.tsv
5.82 kB
genome region.png
230.79 kB
K-mers
kmer_frequency_intron.tsv
5.85 kB
other_exon region.png
171.25 kB
kmer_frequency_ncRNA.tsv
5.87 kB
positional_distribution_ncRNA.tsv
372.33 kB
kmer_frequency_utr3.tsv
5.88 kB
positional_distribution_intron.tsv
292.90 kB
positional_distribution_genome.tsv
555.13 kB
intron region.png
188.46 kB
positional_distribution_utr3.tsv
564.67 kB
kmer_frequency_other_exon.tsv
5.83 kB
utr3 region.png
240.79 kB
ncRNA region.png
319.82 kB
kmer_frequency_genome.tsv
5.81 kB
positional_distribution_other_exon.tsv
566.43 kB
genome region.png
239.08 kB
K-mers
kmer_frequency_intron.tsv
5.91 kB
positional_distribution_ncRNA.tsv
495.97 kB
other_exon region.png
151.10 kB
intron region.png
272.97 kB
utr3 region.png
207.63 kB
kmer_frequency_other_exon.tsv
5.81 kB
kmer_frequency_genome.tsv
5.89 kB
positional_distribution_intron.tsv
367.38 kB
positional_distribution_other_exon.tsv
562.22 kB
positional_distribution_utr3.tsv
562.06 kB
kmer_frequency_utr3.tsv
5.76 kB
kmer_frequency_ncRNA.tsv
5.88 kB
ncRNA region.png
288.31 kB
positional_distribution_genome.tsv
567.49 kB
genome region.png
184.49 kB
STAR
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
145.36 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bam
218.98 MB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed.bw
105.93 kB
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-ju_trimmed_SJ.out.tab
0 B
STAR
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_unmapped.out.mate1.fastq.gz
87.56 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bam
133.25 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-ju_trimmed.bw
105.80 kB
FASTQ file (single-end)
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_fastqc.zip
526.94 kB
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju.fastq.gz
388.15 MB
iCount xlsites
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_skipped.bam
3.08 kB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.00 MB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_single.bedgraph
1.21 MB
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_single.bed.gz
322.69 kB
iCount xlsites
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_skipped.bam
2.92 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_singleAndMulti.bed.gz
1.86 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single.bed.gz
277.38 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single.bedgraph
1.03 MB
iCount xlsites
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_skipped.bam
2.92 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single.bedgraph
1.03 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_singleAndMulti.bed.gz
1.86 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single.bed.gz
277.38 kB
STAR
demux_NNNNCACAGNNN_trimmed_trimmed.bam.bai
4.92 MB
demux_NNNNCACAGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
98.49 MB
demux_NNNNCACAGNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNCACAGNNN_trimmed_trimmed.bam
2.78 GB
demux_NNNNCACAGNNN_trimmed_trimmed_SJ.out.tab
365.07 kB
iCount summary
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_single_summary_subtype.tsv
636 B
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_single_summary_type.tsv
266 B
demux_NNNNTCGAGATTNNNNN_trimmed_trimmed_single_summary_gene.tsv
619.71 kB
iCount xlsites
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single.bedgraph
1.53 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_skipped.bam
3.11 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single.bed.gz
402.81 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.44 MB
iCount xlsites
demux_NNNNATACGNNN_trimmed_trimmed_skipped.bam
3.50 kB
demux_NNNNATACGNNN_trimmed_trimmed_single.bed.gz
663.51 kB
demux_NNNNATACGNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.70 MB
demux_NNNNATACGNNN_trimmed_trimmed_single.bedgraph
2.64 MB
iCount peaks
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_peaks.bed.gz
1.17 MB
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_scores.tsv.gz
4.41 MB
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_peaks.bedgraph
4.90 MB
STAR
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed.bam.bai
4.69 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz
47.08 MB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_stats.txt
1.81 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed_SJ.out.tab
998.64 kB
m6a-cd8-t-cells-day1-activated-donor3-totalrna-20190110-ju_trimmed.bam
1.65 GB
iCount annotate
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_annotated.bed.gz
6.64 MB
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_annotated.bedgraph
22.96 MB
STAR
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_unmapped.out.mate1.fastq.gz
49.69 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_stats.txt
1.81 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed.bam
1.74 GB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_SJ.out.tab
980.30 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed.bam.bai
4.78 MB
iCount peaks
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_scores.tsv.gz
4.19 MB
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_peaks.bedgraph
3.54 MB
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_peaks.bed.gz
897.52 kB
iCount peaks
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_peaks.bedgraph
3.38 MB
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_scores.tsv.gz
3.50 MB
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_peaks.bed.gz
853.82 kB
Cutadapt (single-end)
demux_NNNNCACAGNNN_trimmed_trimmed.fastq.gz
385.68 MB
demux_NNNNCACAGNNN_trimmed_trimmed_fastqc.zip
478.92 kB
iCount summary
demux_NNNNCACAGNNN_trimmed_trimmed_single_summary_subtype.tsv
644 B
demux_NNNNCACAGNNN_trimmed_trimmed_single_summary_gene.tsv
946.73 kB
demux_NNNNCACAGNNN_trimmed_trimmed_single_summary_type.tsv
269 B
iCount summary
demux_NNNNGTTTCTTANNNNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
demux_NNNNGTTTCTTANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNGTTTCTTANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
551.34 kB
STAR
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
33.88 MB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped.bam
202.90 MB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped.bam.bai
4.00 MB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped.bw
33.78 kB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_SJ.out.tab
365.55 kB
STAR
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
138.98 MB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed.bam
750.48 MB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed_stats.txt
1.79 kB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed_SJ.out.tab
0 B
STAR
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed.bam
616.28 MB
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
125.96 MB
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-tcells-naive-cd8-donor2-20180420-ju_trimmed_stats.txt
1.79 kB
iCount xlsites
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_skipped.bam
3.10 kB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_single.bed.gz
1.03 MB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_single.bedgraph
4.33 MB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
3.06 MB
STAR
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed_stats.txt
1.79 kB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed.bam
725.97 MB
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-tcells-s2hg-treated-donor1-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
119.54 MB
STAR
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
26.03 MB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped.bam.bai
4.10 MB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped_SJ.out.tab
472.46 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped.bw
35.46 kB
m6a-cd8-tcells-vehicle-treated-donor3-20180420-jufastqgz_unmapped.bam
155.38 MB
iCount xlsites
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_single.bed.gz
557.04 kB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_skipped.bam
3.52 kB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
1.62 MB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_single.bedgraph
2.23 MB
STAR
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed.bam
531.04 MB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
87.91 MB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed_SJ.out.tab
0 B
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed_stats.txt
1.79 kB
m6a-cd8-tcells-s2hg-treated-donor2-20180420-ju_trimmed.bam.bai
20.56 kB
STAR
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed.bam
391.43 MB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
66.99 MB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed_stats.txt
1.78 kB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed_SJ.out.tab
0 B
iCount summary
Input_Naive Donor1_20180223_JU_grouped_summary.tsv_summary_subtype.tsv
636 B
Input_Naive Donor1_20180223_JU_grouped_summary.tsv_summary_type.tsv
266 B
Input_Naive Donor1_20180223_JU_grouped_summary.tsv_summary_gene.tsv
619.71 kB
iCount peaks
Input_Naive Donor1_20180223_JU_grouped_peaks.bed.gz
42.43 kB
Input_Naive Donor1_20180223_JU_grouped_peaks.bedgraph
92.48 kB
Input_Naive Donor1_20180223_JU_grouped_scores.tsv.gz
458.92 kB
iCount peaks
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_peaks.bed.gz
167.09 kB
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_scores.tsv.gz
1.46 MB
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_peaks.bedgraph
447.50 kB
iCount peaks
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_peaks.bedgraph
243.83 kB
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_scores.tsv.gz
898.82 kB
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_peaks.bed.gz
105.93 kB
iCount peaks
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_peaks.bedgraph
235.74 kB
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_peaks.bed.gz
106.44 kB
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_scores.tsv.gz
738.87 kB
iCount annotate
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_annotated.bed.gz
976.97 kB
m6A_CD8_Tcells_vehicle-treated Donor1_20180420_JU_DONOR1_grouped_annotated.bedgraph
2.63 MB
iCount summary
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_gene.tsv
1.09 MB
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_subtype.tsv
650 B
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_type.tsv
271 B
iCount peaks
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_scores.tsv.gz
2.13 MB
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_peaks.bed.gz
208.00 kB
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_peaks.bedgraph
589.90 kB
iCount annotate
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_annotated.bed.gz
3.19 MB
m6A_CD8_Tcells_Naive CD8 Donor3_20180420_JU_DONOR3_grouped_annotated.bedgraph
10.00 MB
iCount summary
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_subtype.tsv
645 B
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_gene.tsv
1.07 MB
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_type.tsv
272 B
iCount annotate
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_annotated.bed.gz
6.21 MB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_annotated.bedgraph
20.55 MB
iCount peaks
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_peaks.bed.gz
217.80 kB
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_peaks.bedgraph
598.61 kB
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_scores.tsv.gz
1.91 MB
iCount summary
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_subtype.tsv
651 B
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_type.tsv
270 B
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_gene.tsv
1.34 MB
iCount annotate
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_annotated.bed.gz
2.82 MB
m6A_CD8_Tcells_Naive CD8 Donor2_20180420_JU_DONOR2_grouped_annotated.bedgraph
8.69 MB
iCount peaks
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_peaks.bed.gz
102.10 kB
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_peaks.bedgraph
225.10 kB
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_scores.tsv.gz
829.74 kB
iCount summary
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_type.tsv
272 B
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_subtype.tsv
651 B
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_gene.tsv
1.28 MB
iCount summary
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_type.tsv
274 B
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_gene.tsv
1.34 MB
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_subtype.tsv
651 B
iCount peaks
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_peaks.bed.gz
508.03 kB
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_scores.tsv.gz
3.29 MB
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_peaks.bedgraph
1.60 MB
iCount peaks
Input_R2HG Donors1&2&3_20180223_JU_grouped_peaks.bed.gz
126.21 kB
Input_R2HG Donors1&2&3_20180223_JU_grouped_peaks.bedgraph
307.70 kB
Input_R2HG Donors1&2&3_20180223_JU_grouped_scores.tsv.gz
1.13 MB
iCount summary
demux_NNNNCCTGCNNN_trimmed_trimmed_single_summary_subtype.tsv
644 B
demux_NNNNCCTGCNNN_trimmed_trimmed_single_summary_gene.tsv
875.55 kB
demux_NNNNCCTGCNNN_trimmed_trimmed_single_summary_type.tsv
268 B
iCount peaks
Input_S2HG Donors1&2&3_20180223_JU_grouped_peaks.bed.gz
97.95 kB
Input_S2HG Donors1&2&3_20180223_JU_grouped_scores.tsv.gz
955.60 kB
Input_S2HG Donors1&2&3_20180223_JU_grouped_peaks.bedgraph
228.82 kB
iCount summary
m1A_R2HG Donor1_20180223_JU_grouped_summary.tsv_summary_subtype.tsv
650 B
m1A_R2HG Donor1_20180223_JU_grouped_summary.tsv_summary_type.tsv
269 B
m1A_R2HG Donor1_20180223_JU_grouped_summary.tsv_summary_gene.tsv
649.52 kB
STAR
demux_NNNNGTTTCNNN_trimmed_unmapped.out.mate1.fastq.gz
82.22 MB
demux_NNNNGTTTCNNN_trimmed.bam.bai
5.03 MB
demux_NNNNGTTTCNNN_trimmed.bam
2.62 GB
demux_NNNNGTTTCNNN_trimmed_SJ.out.tab
465.36 kB
demux_NNNNGTTTCNNN_trimmed_stats.txt
1.81 kB
iCount summary
m1A_Vehicle Donor1_20180223_JU_grouped_summary.tsv_summary_type.tsv
268 B
m1A_Vehicle Donor1_20180223_JU_grouped_summary.tsv_summary_gene.tsv
588.92 kB
m1A_Vehicle Donor1_20180223_JU_grouped_summary.tsv_summary_subtype.tsv
646 B
iCount xlsites
demux_NNNNTCATCNNN_trimmed_skipped.bam
3.29 kB
demux_NNNNTCATCNNN_trimmed_single.bed.gz
1.20 MB
demux_NNNNTCATCNNN_trimmed_single.bedgraph
5.00 MB
demux_NNNNTCATCNNN_trimmed_singleAndMulti.bed.gz
4.49 MB
Cutadapt (single-end)
demux_NNNNGTTTCNNN_trimmed.fastq.gz
374.81 MB
demux_NNNNGTTTCNNN_trimmed_fastqc.zip
443.34 kB
STAR
demux_NNNNTCATCNNN_trimmed_unmapped.out.mate1.fastq.gz
76.07 MB
demux_NNNNTCATCNNN_trimmed.bam
2.37 GB
demux_NNNNTCATCNNN_trimmed.bam.bai
4.69 MB
demux_NNNNTCATCNNN_trimmed_SJ.out.tab
433.17 kB
demux_NNNNTCATCNNN_trimmed_stats.txt
1.81 kB
iCount peaks
m1A_Vehicle Donor1_20180223_JU_grouped_peaks.bed.gz
81.49 kB
m1A_Vehicle Donor1_20180223_JU_grouped_scores.tsv.gz
457.35 kB
m1A_Vehicle Donor1_20180223_JU_grouped_peaks.bedgraph
178.13 kB
iCount summary
demux_NNNNTCGAGNNN_trimmed_single_summary.tsv_summary_gene.tsv
108.86 kB
demux_NNNNTCGAGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
577 B
demux_NNNNTCGAGNNN_trimmed_single_summary.tsv_summary_type.tsv
258 B
STAR
demux_NNNNTCGAGNNN_trimmed_unmapped.out.mate1.fastq.gz
8.30 MB
demux_NNNNTCGAGNNN_trimmed.bam.bai
1.93 MB
demux_NNNNTCGAGNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGNNN_trimmed_SJ.out.tab
37.13 kB
demux_NNNNTCGAGNNN_trimmed.bam
58.69 MB
iCount summary
demux_NNNNAACTCNNN_trimmed_single_summary.tsv_summary_type.tsv
268 B
demux_NNNNAACTCNNN_trimmed_single_summary.tsv_summary_gene.tsv
897.81 kB
demux_NNNNAACTCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
646 B
STAR
demux_NNNNCATACNNN_trimmed.bam.bai
5.17 MB
demux_NNNNCATACNNN_trimmed_unmapped.out.mate1.fastq.gz
112.90 MB
demux_NNNNCATACNNN_trimmed.bam
3.26 GB
demux_NNNNCATACNNN_trimmed_stats.txt
1.82 kB
demux_NNNNCATACNNN_trimmed_SJ.out.tab
841.35 kB
STAR
demux_NNNNTCGCCNNN_trimmed.bam.bai
4.75 MB
demux_NNNNTCGCCNNN_trimmed_unmapped.out.mate1.fastq.gz
61.35 MB
demux_NNNNTCGCCNNN_trimmed_stats.txt
1.81 kB
demux_NNNNTCGCCNNN_trimmed_SJ.out.tab
523.87 kB
demux_NNNNTCGCCNNN_trimmed.bam
1.82 GB
STAR
demux_NNNNCACAGNNN_trimmed_unmapped.out.mate1.fastq.gz
98.49 MB
demux_NNNNCACAGNNN_trimmed.bam.bai
4.92 MB
demux_NNNNCACAGNNN_trimmed.bam
2.78 GB
demux_NNNNCACAGNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCACAGNNN_trimmed_SJ.out.tab
365.07 kB
iCount summary
demux_NNNNGATCGNNN_trimmed_single_summary.tsv_summary_gene.tsv
825.82 kB
demux_NNNNGATCGNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNGATCGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
639 B
STAR
demux_NNNNGATCGNNN_trimmed.bam.bai
4.43 MB
demux_NNNNGATCGNNN_trimmed.bam
1.26 GB
demux_NNNNGATCGNNN_trimmed_unmapped.out.mate1.fastq.gz
41.58 MB
demux_NNNNGATCGNNN_trimmed_stats.txt
1.81 kB
demux_NNNNGATCGNNN_trimmed_SJ.out.tab
199.98 kB
Cutadapt (single-end)
demux_NNNNGATCGNNN_trimmed.fastq.gz
188.71 MB
demux_NNNNGATCGNNN_trimmed_fastqc.zip
412.82 kB
STAR
demux_NNNNCCTGCNNN_trimmed_unmapped.out.mate1.fastq.gz
48.33 MB
demux_NNNNCCTGCNNN_trimmed.bam.bai
4.10 MB
demux_NNNNCCTGCNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCCTGCNNN_trimmed.bam
1.41 GB
demux_NNNNCCTGCNNN_trimmed_SJ.out.tab
292.25 kB
Cutadapt (single-end)
demux_NNNNCCTGCNNN_trimmed.fastq.gz
196.89 MB
demux_NNNNCCTGCNNN_trimmed_fastqc.zip
421.14 kB
Reads (single-end)
demux_NNNNCCTGCNNN.fastq.gz
201.05 MB
demux_NNNNCCTGCNNN_fastqc.zip
432.47 kB
Reads (single-end)
demux_NNNNCACAGNNN.fastq.gz
392.81 MB
demux_NNNNCACAGNNN_fastqc.zip
472.75 kB
Reads (single-end)
demux_NNNNTCATCNNN.fastq.gz
327.65 MB
demux_NNNNTCATCNNN_fastqc.zip
491.68 kB
STAR
demux_NNNNGTTTCTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
4.37 MB
demux_NNNNGTTTCTTANNNNN_trimmed.bam
107.53 MB
demux_NNNNGTTTCTTANNNNN_trimmed_SJ.out.tab
82.04 kB
demux_NNNNGTTTCTTANNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCTTANNNNN_trimmed.bam.bai
3.29 MB
iCount xlsites
demux_NNNNCAGGGNNN_trimmed_singleAndMulti.bed.gz
2.36 MB
demux_NNNNCAGGGNNN_trimmed_single.bedgraph
1.79 MB
demux_NNNNCAGGGNNN_trimmed_single.bed.gz
477.84 kB
demux_NNNNCAGGGNNN_trimmed_skipped.bam
7.92 kB
STAR
demux_NNNNCAGGGNNN_trimmed_unmapped.out.mate1.fastq.gz
137.87 MB
demux_NNNNCAGGGNNN_trimmed.bam.bai
3.82 MB
demux_NNNNCAGGGNNN_trimmed_SJ.out.tab
235.06 kB
demux_NNNNCAGGGNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCAGGGNNN_trimmed.bam
1.81 GB
iCount xlsites
demux_NNNNTCGAGATTNNNNN_trimmed_skipped.bam
3.06 kB
demux_NNNNTCGAGATTNNNNN_trimmed_single.bed.gz
383.13 kB
demux_NNNNTCGAGATTNNNNN_trimmed_single.bedgraph
1.44 MB
demux_NNNNTCGAGATTNNNNN_trimmed_singleAndMulti.bed.gz
2.50 MB
STAR
demux_NNNNTCGAGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
8.08 MB
demux_NNNNTCGAGATTNNNNN_trimmed.bam
140.78 MB
demux_NNNNTCGAGATTNNNNN_trimmed.bam.bai
3.85 MB
demux_NNNNTCGAGATTNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGATTNNNNN_trimmed_SJ.out.tab
104.07 kB
STAR
demux_NNNNATACGNNN_trimmed.bam.bai
1.95 MB
demux_NNNNATACGNNN_trimmed_unmapped.out.mate1.fastq.gz
2.75 MB
demux_NNNNATACGNNN_trimmed.bam
60.70 MB
demux_NNNNATACGNNN_trimmed_stats.txt
1.80 kB
demux_NNNNATACGNNN_trimmed_SJ.out.tab
20.84 kB
Cutadapt (single-end)
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_fastqc.zip
467.78 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed.fastq.gz
26.21 MB
Cutadapt (single-end)
demux_NNNNATACGNNN_trimmed_fastqc.zip
421.64 kB
demux_NNNNATACGNNN_trimmed.fastq.gz
10.71 MB
Cutadapt (single-end)
demux_NNNNTGTGGNNN_trimmed.fastq.gz
295.93 MB
demux_NNNNTGTGGNNN_trimmed_fastqc.zip
471.62 kB
Cutadapt (single-end)
demux_NNNNGATCGNNN_trimmed.fastq.gz
355.74 MB
demux_NNNNGATCGNNN_trimmed_fastqc.zip
474.78 kB
STAR
demux_NNNNGTTTCATTNNNNN_trimmed.bam.bai
3.87 MB
demux_NNNNGTTTCATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
6.82 MB
demux_NNNNGTTTCATTNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCATTNNNNN_trimmed_SJ.out.tab
91.46 kB
demux_NNNNGTTTCATTNNNNN_trimmed.bam
125.45 MB
Cutadapt (single-end)
demux_NNNNGTTTCATTNNNNN_trimmed.fastq.gz
18.46 MB
demux_NNNNGTTTCATTNNNNN_trimmed_fastqc.zip
465.13 kB
STAR
demux_NNNNCACAGGGANNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGGGANNNNN_trimmed.bam.bai
3.53 MB
demux_NNNNCACAGGGANNNNN_trimmed_unmapped.out.mate1.fastq.gz
5.16 MB
demux_NNNNCACAGGGANNNNN_trimmed.bam
186.45 MB
demux_NNNNCACAGGGANNNNN_trimmed_SJ.out.tab
135.79 kB
iCount xlsites
demux_NNNNGTTTCTTANNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGTTTCTTANNNNN_trimmed_single.bed.gz
277.37 kB
demux_NNNNGTTTCTTANNNNN_trimmed_singleAndMulti.bed.gz
1.86 MB
demux_NNNNGTTTCTTANNNNN_trimmed_single.bedgraph
1.03 MB
STAR
demux_NNNNGTTTCTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
4.42 MB
demux_NNNNGTTTCTTANNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCTTANNNNN_trimmed.bam
107.60 MB
demux_NNNNGTTTCTTANNNNN_trimmed.bam.bai
3.29 MB
demux_NNNNGTTTCTTANNNNN_trimmed_SJ.out.tab
82.07 kB
STAR
demux_NNNNTCGAGGTCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
9.71 MB
demux_NNNNTCGAGGTCNNNNN_trimmed.bam.bai
4.02 MB
demux_NNNNTCGAGGTCNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_SJ.out.tab
187.20 kB
demux_NNNNTCGAGGTCNNNNN_trimmed.bam
323.06 MB
Cutadapt (single-end)
demux_NNNNTCGAGGTCNNNNN_trimmed.fastq.gz
39.70 MB
demux_NNNNTCGAGGTCNNNNN_trimmed_fastqc.zip
376.27 kB
STAR
demux_NNNNGTTTCTGCNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCTGCNNNNN_trimmed.bam.bai
3.38 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
3.64 MB
demux_NNNNGTTTCTGCNNNNN_trimmed.bam
110.94 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_SJ.out.tab
91.33 kB
STAR
demux_NNNNCACAGCGTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
4.03 MB
demux_NNNNCACAGCGTNNNNN_trimmed.bam
148.03 MB
demux_NNNNCACAGCGTNNNNN_trimmed.bam.bai
3.31 MB
demux_NNNNCACAGCGTNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGCGTNNNNN_trimmed_SJ.out.tab
101.44 kB
Cutadapt (single-end)
demux_NNNNCACAGCGTNNNNN_trimmed.fastq.gz
17.58 MB
demux_NNNNCACAGCGTNNNNN_trimmed_fastqc.zip
379.81 kB
iCount xlsites
demux_NNNNGATCGNNN_trimmed_single.bed.gz
455.70 kB
demux_NNNNGATCGNNN_trimmed_single.bedgraph
1.71 MB
demux_NNNNGATCGNNN_trimmed_singleAndMulti.bed.gz
2.34 MB
demux_NNNNGATCGNNN_trimmed_skipped.bam
8.03 kB
STAR
demux_NNNNGATCGNNN_trimmed.bam.bai
3.78 MB
demux_NNNNGATCGNNN_trimmed.bam
1.69 GB
demux_NNNNGATCGNNN_trimmed_stats.txt
1.81 kB
demux_NNNNGATCGNNN_trimmed_SJ.out.tab
221.33 kB
demux_NNNNGATCGNNN_trimmed_unmapped.out.mate1.fastq.gz
127.17 MB
iCount xlsites
demux_NNNNCACAGTGCNNNNN_trimmed_singleAndMulti.bed.gz
1.81 MB
demux_NNNNCACAGTGCNNNNN_trimmed_single.bed.gz
283.65 kB
demux_NNNNCACAGTGCNNNNN_trimmed_skipped.bam
3.20 kB
demux_NNNNCACAGTGCNNNNN_trimmed_single.bedgraph
1.06 MB
STAR
demux_NNNNCACAGTGCNNNNN_trimmed.bam.bai
3.19 MB
demux_NNNNCACAGTGCNNNNN_trimmed.bam
107.25 MB
demux_NNNNCACAGTGCNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGTGCNNNNN_trimmed_SJ.out.tab
91.35 kB
demux_NNNNCACAGTGCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
3.14 MB
Cutadapt (single-end)
demux_NNNNCACAGTGCNNNNN_trimmed.fastq.gz
13.07 MB
demux_NNNNCACAGTGCNNNNN_trimmed_fastqc.zip
374.27 kB
STAR
demux_NNNNTCGAGCTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
6.40 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_SJ.out.tab
139.08 kB
demux_NNNNTCGAGCTGNNNNN_trimmed.bam
213.62 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGCTGNNNNN_trimmed.bam.bai
3.77 MB
STAR
demux_NNNNATACGNNN_trimmed_unmapped.out.mate1.fastq.gz
2.75 MB
demux_NNNNATACGNNN_trimmed.bam
60.69 MB
demux_NNNNATACGNNN_trimmed_SJ.out.tab
20.74 kB
demux_NNNNATACGNNN_trimmed_stats.txt
1.80 kB
demux_NNNNATACGNNN_trimmed.bam.bai
1.95 MB
Cutadapt (single-end)
demux_NNNNATACGNNN_trimmed.fastq.gz
10.71 MB
demux_NNNNATACGNNN_trimmed_fastqc.zip
461.44 kB
iCount xlsites
demux_NNNNGTTTCAGGNNNNN_trimmed_single.bed.gz
471.32 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_skipped.bam
3.22 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_singleAndMulti.bed.gz
2.80 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_single.bedgraph
1.80 MB
STAR
demux_NNNNGTTTCAGGNNNNN_trimmed.bam
173.31 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
5.34 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_SJ.out.tab
145.87 kB
demux_NNNNGTTTCAGGNNNNN_trimmed.bam.bai
3.92 MB
STAR
demux_NNNNTCGAGTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
7.22 MB
demux_NNNNTCGAGTTANNNNN_trimmed.bam.bai
3.36 MB
demux_NNNNTCGAGTTANNNNN_trimmed.bam
137.08 MB
demux_NNNNTCGAGTTANNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGTTANNNNN_trimmed_SJ.out.tab
102.14 kB
iCount summary
Input_S2HG Donors1&2&3_20180223_JU_grouped_summary.tsv_summary_subtype.tsv
643 B
Input_S2HG Donors1&2&3_20180223_JU_grouped_summary.tsv_summary_type.tsv
269 B
Input_S2HG Donors1&2&3_20180223_JU_grouped_summary.tsv_summary_gene.tsv
931.07 kB
iCount xlsites
demux_NNNNTCATCNNN_trimmed_trimmed_single.bed.gz
1.20 MB
demux_NNNNTCATCNNN_trimmed_trimmed_singleAndMulti.bed.gz
4.49 MB
demux_NNNNTCATCNNN_trimmed_trimmed_skipped.bam
3.30 kB
demux_NNNNTCATCNNN_trimmed_trimmed_single.bedgraph
5.00 MB
iCount RNA-maps
results.tar.gz
1001.54 kB
Cutadapt (single-end)
demux_NNNNATACGNNN_trimmed_trimmed_fastqc.zip
507.85 kB
demux_NNNNATACGNNN_trimmed_trimmed.fastq.gz
10.71 MB
Cutadapt (single-end)
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed.fastq.gz
21.70 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_fastqc.zip
455.70 kB
iCount summary
demux_NNNNATACGNNN_trimmed_trimmed_single_summary_type.tsv
259 B
demux_NNNNATACGNNN_trimmed_trimmed_single_summary_subtype.tsv
625 B
demux_NNNNATACGNNN_trimmed_trimmed_single_summary_gene.tsv
154.49 kB
iCount annotate
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_annotated.bedgraph
3.04 MB
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_annotated.bed.gz
1.09 MB
Cutadapt (single-end)
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed.fastq.gz
13.97 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_fastqc.zip
474.59 kB
iCount xlsites
demux_NNNNGTTTCNNN_trimmed_trimmed_single.bedgraph
8.82 MB
demux_NNNNGTTTCNNN_trimmed_trimmed_single.bed.gz
2.06 MB
demux_NNNNGTTTCNNN_trimmed_trimmed_skipped.bam
3.26 kB
demux_NNNNGTTTCNNN_trimmed_trimmed_singleAndMulti.bed.gz
7.27 MB
Cutadapt (single-end)
demux_NNNNGTTTCTTANNNNN_trimmed.fastq.gz
14.32 MB
demux_NNNNGTTTCTTANNNNN_trimmed_fastqc.zip
388.80 kB
iCount xlsites
demux_NNNNTCGAGCTGNNNNN_trimmed_skipped.bam
3.05 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_singleAndMulti.bed.gz
2.70 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_single.bedgraph
1.68 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_single.bed.gz
445.00 kB
iCount summary
demux_NNNNGTTTCAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNGTTTCAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNGTTTCAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
704.26 kB
iCount summary
demux_NNNNATACGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
625 B
demux_NNNNATACGNNN_trimmed_single_summary.tsv_summary_gene.tsv
154.49 kB
demux_NNNNATACGNNN_trimmed_single_summary.tsv_summary_type.tsv
259 B
iCount xlsites
demux_NNNNGTTTCTGCNNNNN_trimmed_skipped.bam
3.20 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_single.bed.gz
302.63 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_singleAndMulti.bed.gz
1.98 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_single.bedgraph
1.13 MB
STAR
demux_NNNNGTTTCATTNNNNN_trimmed.bam
125.61 MB
demux_NNNNGTTTCATTNNNNN_trimmed.bam.bai
3.87 MB
demux_NNNNGTTTCATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
6.84 MB
demux_NNNNGTTTCATTNNNNN_trimmed_SJ.out.tab
91.60 kB
demux_NNNNGTTTCATTNNNNN_trimmed_stats.txt
1.80 kB
iCount xlsites
demux_NNNNCACAGGGANNNNN_trimmed_single.bed.gz
411.75 kB
demux_NNNNCACAGGGANNNNN_trimmed_skipped.bam
3.16 kB
demux_NNNNCACAGGGANNNNN_trimmed_single.bedgraph
1.57 MB
demux_NNNNCACAGGGANNNNN_trimmed_singleAndMulti.bed.gz
2.37 MB
iCount xlsites
demux_NNNNGTTTCATTNNNNN_trimmed_singleAndMulti.bed.gz
2.44 MB
demux_NNNNGTTTCATTNNNNN_trimmed_skipped.bam
3.09 kB
demux_NNNNGTTTCATTNNNNN_trimmed_single.bed.gz
402.80 kB
demux_NNNNGTTTCATTNNNNN_trimmed_single.bedgraph
1.53 MB
iCount summary
demux_NNNNTCATCNNN_trimmed_trimmed_single_summary_subtype.tsv
643 B
demux_NNNNTCATCNNN_trimmed_trimmed_single_summary_type.tsv
267 B
demux_NNNNTCATCNNN_trimmed_trimmed_single_summary_gene.tsv
1.01 MB
Cutadapt (single-end)
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_fastqc.zip
523.01 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed.fastq.gz
18.54 MB
Cutadapt (single-end)
demux_NNNNTCGAGTTANNNNN_trimmed.fastq.gz
19.53 MB
demux_NNNNTCGAGTTANNNNN_trimmed_fastqc.zip
467.33 kB
iCount peaks
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_scores.tsv.gz
4.04 MB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_peaks.bedgraph
1.67 MB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_peaks.bed.gz
517.71 kB
iCount summary
demux_NNNNGTTTCATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
demux_NNNNGTTTCATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNGTTTCATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
608.61 kB
Cutadapt (single-end)
demux_NNNNGATCGNNN_trimmed.fastq.gz
353.94 MB
demux_NNNNGATCGNNN_trimmed_fastqc.zip
468.92 kB
iCount summary
demux_NNNNCACAGGGANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNCACAGGGANNNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNCACAGGGANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
671.33 kB
iCount annotate
m1A_Vehicle Donor1_20180223_JU_grouped_annotated.bed.gz
532.71 kB
m1A_Vehicle Donor1_20180223_JU_grouped_annotated.bedgraph
1.46 MB
iCount xlsites
demux_NNNNATACGNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNATACGNNN_trimmed_single.bed.gz
53.71 kB
demux_NNNNATACGNNN_trimmed_singleAndMulti.bed.gz
516.52 kB
demux_NNNNATACGNNN_trimmed_single.bedgraph
187.90 kB
iCount summary
demux_NNNNTCGAGCTGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
642 B
demux_NNNNTCGAGCTGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
710.00 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
iCount summary
demux_NNNNTCGAGGTCNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
641 B
demux_NNNNTCGAGGTCNNNNN_trimmed_single_summary.tsv_summary_type.tsv
267 B
demux_NNNNTCGAGGTCNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
794.42 kB
iCount summary
demux_NNNNCACAGTGCNNNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNCACAGTGCNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
561.07 kB
demux_NNNNCACAGTGCNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
iCount xlsites
demux_NNNNTCGAGTTANNNNN_trimmed_skipped.bam
3.23 kB
demux_NNNNTCGAGTTANNNNN_trimmed_singleAndMulti.bed.gz
2.03 MB
demux_NNNNTCGAGTTANNNNN_trimmed_single.bed.gz
313.26 kB
demux_NNNNTCGAGTTANNNNN_trimmed_single.bedgraph
1.17 MB
iCount summary
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_subtype.tsv
643 B
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_gene.tsv
877.77 kB
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_summary.tsv_summary_type.tsv
269 B
Cutadapt (single-end)
demux_NNNNTCGAGCTGNNNNN_trimmed_fastqc.zip
391.92 kB
demux_NNNNTCGAGCTGNNNNN_trimmed.fastq.gz
26.21 MB
Cutadapt (single-end)
demux_NNNNGTTTCTGCNNNNN_trimmed.fastq.gz
13.97 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_fastqc.zip
381.89 kB
iCount summary
demux_NNNNTCGAGTTANNNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNTCGAGTTANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
584.25 kB
demux_NNNNTCGAGTTANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
634 B
iCount annotate
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_annotated.bed.gz
1.20 MB
m6A_CD8_Tcells_vehicle-treated Donor2_20180420_JU_DONOR2_grouped_annotated.bedgraph
3.39 MB
iCount xlsites
demux_NNNNTCGAGGTCNNNNN_trimmed_single.bed.gz
587.10 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_skipped.bam
3.60 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_singleAndMulti.bed.gz
3.35 MB
demux_NNNNTCGAGGTCNNNNN_trimmed_single.bedgraph
2.26 MB
iCount summary
demux_NNNNGTTTCTGCNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNGTTTCTGCNNNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNGTTTCTGCNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
574.47 kB
iCount summary
demux_NNNNGTTTCAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNGTTTCAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNGTTTCAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
706.61 kB
iCount xlsites
demux_NNNNCACAGCGTNNNNN_trimmed_skipped.bam
3.07 kB
demux_NNNNCACAGCGTNNNNN_trimmed_single.bed.gz
322.68 kB
demux_NNNNCACAGCGTNNNNN_trimmed_single.bedgraph
1.21 MB
demux_NNNNCACAGCGTNNNNN_trimmed_singleAndMulti.bed.gz
2.00 MB
iCount summary
demux_NNNNGATCGNNN_trimmed_single_summary.tsv_summary_type.tsv
269 B
demux_NNNNGATCGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
650 B
demux_NNNNGATCGNNN_trimmed_single_summary.tsv_summary_gene.tsv
649.52 kB
iCount summary
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_subtype.tsv
645 B
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_type.tsv
268 B
m6A_CD8_Tcells_vehicle-treated Donor3_20180420_JU_DONOR3_grouped_summary.tsv_summary_gene.tsv
1.00 MB
iCount xlsites
demux_NNNNATACGNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNATACGNNN_trimmed_single.bed.gz
53.76 kB
demux_NNNNATACGNNN_trimmed_singleAndMulti.bed.gz
516.71 kB
demux_NNNNATACGNNN_trimmed_single.bedgraph
188.06 kB
iCount summary
m1A_S2HG Donor1_20180223_JU_grouped_summary.tsv_summary_type.tsv
267 B
m1A_S2HG Donor1_20180223_JU_grouped_summary.tsv_summary_gene.tsv
673.14 kB
m1A_S2HG Donor1_20180223_JU_grouped_summary.tsv_summary_subtype.tsv
647 B
iCount annotate
m1A_S2HG Donor1_20180223_JU_grouped_annotated.bed.gz
641.86 kB
m1A_S2HG Donor1_20180223_JU_grouped_annotated.bedgraph
1.79 MB
iCount xlsites
demux_NNNNGTTTCAGGNNNNN_trimmed_skipped.bam
3.22 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_singleAndMulti.bed.gz
2.80 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_single.bed.gz
471.49 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_single.bedgraph
1.80 MB
iCount xlsites
demux_NNNNGTTTCATTNNNNN_trimmed_single.bed.gz
403.32 kB
demux_NNNNGTTTCATTNNNNN_trimmed_skipped.bam
3.09 kB
demux_NNNNGTTTCATTNNNNN_trimmed_singleAndMulti.bed.gz
2.44 MB
demux_NNNNGTTTCATTNNNNN_trimmed_single.bedgraph
1.53 MB
iCount summary
demux_NNNNGTTTCTTANNNNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
demux_NNNNGTTTCTTANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
551.34 kB
demux_NNNNGTTTCTTANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
Cutadapt (single-end)
demux_NNNNGTTTCAGGNNNNN_trimmed.fastq.gz
21.71 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_fastqc.zip
382.05 kB
iCount summary
demux_NNNNGTTTCATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
demux_NNNNGTTTCATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
618.28 kB
demux_NNNNGTTTCATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
635 B
iCount peaks
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_peaks.bed.gz
173.48 kB
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_peaks.bedgraph
418.50 kB
m6A_CD8_Tcells_S2HG-treated Donor1_20180420_JU_DONOR1_grouped_scores.tsv.gz
1.08 MB
iCount annotate
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_annotated.bed.gz
2.08 MB
m6A_CD8_Tcells_S2HG-treated Donor3_20180420_JU_DONOR3_grouped_annotated.bedgraph
6.24 MB
STAR
demux_NNNNGTTTCAGGNNNNN_trimmed.bam.bai
3.92 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
5.34 MB
demux_NNNNGTTTCAGGNNNNN_trimmed.bam
173.34 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_SJ.out.tab
145.98 kB
STAR
demux_NNNNGATCGNNN_trimmed.bam
1.70 GB
demux_NNNNGATCGNNN_trimmed_SJ.out.tab
224.44 kB
demux_NNNNGATCGNNN_trimmed.bam.bai
3.83 MB
demux_NNNNGATCGNNN_trimmed_stats.txt
1.81 kB
demux_NNNNGATCGNNN_trimmed_unmapped.out.mate1.fastq.gz
128.17 MB
STAR
demux_NNNNTGTGGNNN_trimmed_unmapped.out.mate1.fastq.gz
100.04 MB
demux_NNNNTGTGGNNN_trimmed.bam.bai
3.52 MB
demux_NNNNTGTGGNNN_trimmed_stats.txt
1.81 kB
demux_NNNNTGTGGNNN_trimmed_SJ.out.tab
191.19 kB
demux_NNNNTGTGGNNN_trimmed.bam
1.45 GB
iCount summary
demux_NNNNATACGNNN_trimmed_single_summary.tsv_summary_gene.tsv
152.09 kB
demux_NNNNATACGNNN_trimmed_single_summary.tsv_summary_type.tsv
257 B
demux_NNNNATACGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
627 B
iCount xlsites
demux_NNNNGTTTCTTANNNNN_trimmed_single.bed.gz
277.37 kB
demux_NNNNGTTTCTTANNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGTTTCTTANNNNN_trimmed_singleAndMulti.bed.gz
1.86 MB
demux_NNNNGTTTCTTANNNNN_trimmed_single.bedgraph
1.03 MB
iCount peaks
m1A_S2HG Donor1_20180223_JU_grouped_peaks.bed.gz
105.50 kB
m1A_S2HG Donor1_20180223_JU_grouped_scores.tsv.gz
548.58 kB
m1A_S2HG Donor1_20180223_JU_grouped_peaks.bedgraph
231.73 kB
iCount summary
demux_NNNNTCGAGATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNTCGAGATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNTCGAGATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
619.71 kB
iCount peaks
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_peaks.bed.gz
160.73 kB
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_scores.tsv.gz
1.19 MB
m6A_CD8_Tcells_S2HG-treated Donor2_20180420_JU_DONOR2_grouped_peaks.bedgraph
396.40 kB
Cutadapt (single-end)
demux_NNNNCAGGGNNN_trimmed.fastq.gz
377.61 MB
demux_NNNNCAGGGNNN_trimmed_fastqc.zip
481.94 kB
Cutadapt (single-end)
demux_NNNNAGTCCNNN_trimmed.fastq.gz
256.69 MB
demux_NNNNAGTCCNNN_trimmed_fastqc.zip
447.66 kB
iCount xlsites
demux_NNNNGATCGNNN_trimmed_skipped.bam
3.07 kB
demux_NNNNGATCGNNN_trimmed_singleAndMulti.bed.gz
3.21 MB
demux_NNNNGATCGNNN_trimmed_single.bed.gz
791.48 kB
demux_NNNNGATCGNNN_trimmed_single.bedgraph
3.12 MB
Reads (single-end)
demux_NNNNTCGCCNNN_fastqc.zip
467.62 kB
demux_NNNNTCGCCNNN.fastq.gz
258.33 MB
STAR
demux_NNNNAGTCCNNN_trimmed_unmapped.out.mate1.fastq.gz
57.62 MB
demux_NNNNAGTCCNNN_trimmed.bam
1.91 GB
demux_NNNNAGTCCNNN_trimmed.bam.bai
4.70 MB
demux_NNNNAGTCCNNN_trimmed_stats.txt
1.81 kB
demux_NNNNAGTCCNNN_trimmed_SJ.out.tab
535.28 kB
iCount xlsites
demux_NNNNCACAGNNN_trimmed_single.bed.gz
882.33 kB
demux_NNNNCACAGNNN_trimmed_single.bedgraph
3.52 MB
demux_NNNNCACAGNNN_trimmed_skipped.bam
3.68 kB
demux_NNNNCACAGNNN_trimmed_singleAndMulti.bed.gz
3.59 MB
Reads (single-end)
demux_NNNNGGAGCNNN.fastq.gz
331.06 MB
demux_NNNNGGAGCNNN_fastqc.zip
471.99 kB
iCount peaks
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_scores.tsv.gz
4.04 MB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_peaks.bed.gz
517.71 kB
m6A_CD8_Tcells_Naive CD8 Donors1&2&3_20180420_JU_grouped_peaks.bedgraph
1.67 MB
iCount xlsites
demux_NNNNTCGAGNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNTCGAGNNN_trimmed_single.bedgraph
86.53 kB
demux_NNNNTCGAGNNN_trimmed_single.bed.gz
25.41 kB
demux_NNNNTCGAGNNN_trimmed_singleAndMulti.bed.gz
320.93 kB
iCount summary
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_type.tsv
273 B
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_subtype.tsv
654 B
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_summary.tsv_summary_gene.tsv
1.21 MB
iCount annotate
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_annotated.bedgraph
16.12 MB
m6A_CD8_Tcells_R2HG-treated Donors1&2&3_20180420_JU_grouped_annotated.bed.gz
4.98 MB
iCount summary
demux_NNNNTCGCCNNN_trimmed_single_summary.tsv_summary_type.tsv
270 B
demux_NNNNTCGCCNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.04 MB
demux_NNNNTCGCCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
645 B
iCount xlsites
demux_NNNNTCGCCNNN_trimmed_single.bed.gz
1.50 MB
demux_NNNNTCGCCNNN_trimmed_singleAndMulti.bed.gz
5.16 MB
demux_NNNNTCGCCNNN_trimmed_single.bedgraph
6.43 MB
demux_NNNNTCGCCNNN_trimmed_skipped.bam
4.16 kB
iCount summary
Input_Naive Donors1&3_20180223_JU_grouped_summary.tsv_summary_type.tsv
266 B
Input_Naive Donors1&3_20180223_JU_grouped_summary.tsv_summary_gene.tsv
815.94 kB
Input_Naive Donors1&3_20180223_JU_grouped_summary.tsv_summary_subtype.tsv
643 B
iCount annotate
Input_Naive Donors1&3_20180223_JU_grouped_annotated.bedgraph
2.80 MB
Input_Naive Donors1&3_20180223_JU_grouped_annotated.bed.gz
1023.36 kB
Cutadapt (single-end)
demux_NNNNAACTCNNN_trimmed_fastqc.zip
443.28 kB
demux_NNNNAACTCNNN_trimmed.fastq.gz
193.05 MB
iCount peaks
Input_Naive Donors1&3_20180223_JU_grouped_peaks.bed.gz
73.12 kB
Input_Naive Donors1&3_20180223_JU_grouped_scores.tsv.gz
788.58 kB
Input_Naive Donors1&3_20180223_JU_grouped_peaks.bedgraph
175.09 kB
iCount xlsites
demux_NNNNCATACNNN_trimmed_singleAndMulti.bed.gz
8.18 MB
demux_NNNNCATACNNN_trimmed_single.bedgraph
10.97 MB
demux_NNNNCATACNNN_trimmed_single.bed.gz
2.51 MB
demux_NNNNCATACNNN_trimmed_skipped.bam
5.02 kB
iCount peaks
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_peaks.bed.gz
346.22 kB
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_scores.tsv.gz
2.45 MB
m6A_CD8_Tcells_vehicle-treated Donors1&2&3_20180420_JU_grouped_peaks.bedgraph
1.03 MB
iCount summary
demux_NNNNATACGNNN_trimmed_single_summary.tsv_summary_type.tsv
267 B
demux_NNNNATACGNNN_trimmed_single_summary.tsv_summary_subtype.tsv
640 B
demux_NNNNATACGNNN_trimmed_single_summary.tsv_summary_gene.tsv
822.95 kB
iCount peaks
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_peaks.bed.gz
450.70 kB
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_peaks.bedgraph
1.37 MB
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_scores.tsv.gz
2.94 MB
iCount annotate
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_annotated.bedgraph
14.07 MB
m6A_CD8_Tcells_S2HG-treated Donors1&2&3_20180420_JU_grouped_annotated.bed.gz
4.40 MB
STAR
demux_NNNNATACGNNN_trimmed_trimmed_SJ.out.tab
252.12 kB
demux_NNNNATACGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
55.58 MB
demux_NNNNATACGNNN_trimmed_trimmed.bam.bai
4.18 MB
demux_NNNNATACGNNN_trimmed_trimmed.bam
1.74 GB
demux_NNNNATACGNNN_trimmed_trimmed_stats.txt
1.81 kB
iCount summary
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_type.tsv
267 B
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_gene.tsv
810.13 kB
m6A_CD8_Tcells_Naive CD8 Donor1_20180420_JU_DONOR1_grouped_summary.tsv_summary_subtype.tsv
640 B
iCount summary
demux_NNNNTCATCNNN_trimmed_single_summary.tsv_summary_gene.tsv
1.01 MB
demux_NNNNTCATCNNN_trimmed_single_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNTCATCNNN_trimmed_single_summary.tsv_summary_type.tsv
267 B
iCount summary
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single_summary_subtype.tsv
645 B
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single_summary_gene.tsv
1.11 MB
m6a-cd8-t-cells-non-activated-donor3-totalrna-20190110-jufastqgz_unmapped_single_summary_type.tsv
273 B
iCount summary
m1A_Donor1_ALL-3samples_20180223_JU_grouped_summary.tsv_summary_type.tsv
274 B
m1A_Donor1_ALL-3samples_20180223_JU_grouped_summary.tsv_summary_subtype.tsv
657 B
m1A_Donor1_ALL-3samples_20180223_JU_grouped_summary.tsv_summary_gene.tsv
972.41 kB
iCount xlsites
demux_NNNNGGAGCNNN_trimmed_skipped.bam
5.07 kB
demux_NNNNGGAGCNNN_trimmed_singleAndMulti.bed.gz
7.52 MB
demux_NNNNGGAGCNNN_trimmed_single.bedgraph
10.18 MB
demux_NNNNGGAGCNNN_trimmed_single.bed.gz
2.35 MB
iCount annotate
Input_Naive Donor1_20180223_JU_grouped_annotated.bed.gz
552.20 kB
Input_Naive Donor1_20180223_JU_grouped_annotated.bedgraph
1.44 MB
Cutadapt (single-end)
demux_NNNNGATCGNNN_trimmed_trimmed.fastq.gz
355.74 MB
demux_NNNNGATCGNNN_trimmed_trimmed_fastqc.zip
516.13 kB
Cutadapt (single-end)
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed.fastq.gz
14.32 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_fastqc.zip
502.67 kB
Cutadapt (single-end)
demux_NNNNCCTGCNNN_trimmed_trimmed.fastq.gz
196.89 MB
demux_NNNNCCTGCNNN_trimmed_trimmed_fastqc.zip
481.28 kB
Cutadapt (single-end)
demux_NNNNAACTCNNN_trimmed_trimmed_fastqc.zip
483.25 kB
demux_NNNNAACTCNNN_trimmed_trimmed.fastq.gz
193.05 MB
iCount summary
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_single_summary_type.tsv
264 B
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_single_summary_gene.tsv
574.47 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_single_summary_subtype.tsv
635 B
iCount summary
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_single_summary_subtype.tsv
632 B
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_single_summary_type.tsv
265 B
demux_NNNNCACAGCGTNNNNN_trimmed_trimmed_single_summary_gene.tsv
595.47 kB
iCount summary
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single_summary_type.tsv
265 B
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single_summary_gene.tsv
551.34 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single_summary_subtype.tsv
633 B
iCount summary
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single_summary_type.tsv
265 B
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single_summary_subtype.tsv
638 B
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_single_summary_gene.tsv
608.61 kB
STAR
demux_NNNNGATCGNNN_trimmed_trimmed.bam.bai
4.43 MB
demux_NNNNGATCGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
41.58 MB
demux_NNNNGATCGNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNGATCGNNN_trimmed_trimmed.bam
1.26 GB
demux_NNNNGATCGNNN_trimmed_trimmed_SJ.out.tab
199.98 kB
iCount xlsites
demux_NNNNCATACNNN_trimmed_trimmed_skipped.bam
5.03 kB
demux_NNNNCATACNNN_trimmed_trimmed_singleAndMulti.bed.gz
8.18 MB
demux_NNNNCATACNNN_trimmed_trimmed_single.bed.gz
2.51 MB
demux_NNNNCATACNNN_trimmed_trimmed_single.bedgraph
10.97 MB
iCount xlsites
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.03 MB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_single.bedgraph
1.17 MB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_single.bed.gz
313.26 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_skipped.bam
3.24 kB
iCount xlsites
demux_NNNNGGAGCNNN_trimmed_trimmed_skipped.bam
5.08 kB
demux_NNNNGGAGCNNN_trimmed_trimmed_single.bed.gz
2.35 MB
demux_NNNNGGAGCNNN_trimmed_trimmed_single.bedgraph
10.18 MB
demux_NNNNGGAGCNNN_trimmed_trimmed_singleAndMulti.bed.gz
7.52 MB
iCount xlsites
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_skipped.bam
5.72 kB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_single.bedgraph
13.45 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_single.bed.gz
2.99 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_singleAndMulti.bed.gz
8.71 MB
iCount reads proxy
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped.fastq.gz
109.19 MB
m6a-cd8-tcells-naive-cd8-donor3-20180420-jufastqgz_unmapped_fastqc.zip
477.22 kB
Cutadapt (single-end)
demux_NNNNGTTTCNNN_trimmed_trimmed_fastqc.zip
482.97 kB
demux_NNNNGTTTCNNN_trimmed_trimmed.fastq.gz
374.81 MB
STAR
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
7.22 MB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_SJ.out.tab
102.14 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed.bam
137.07 MB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed.bam.bai
3.36 MB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed.bw
28.02 kB
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_stats.txt
1.80 kB
Cutadapt (single-end)
demux_NNNNTCATCNNN_trimmed_trimmed.fastq.gz
322.32 MB
demux_NNNNTCATCNNN_trimmed_trimmed_fastqc.zip
480.98 kB
Cutadapt (single-end)
demux_NNNNATACGNNN_trimmed_trimmed.fastq.gz
243.11 MB
demux_NNNNATACGNNN_trimmed_trimmed_fastqc.zip
479.53 kB
STAR
demux_NNNNAACTCNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
44.70 MB
demux_NNNNAACTCNNN_trimmed_trimmed.bam.bai
4.19 MB
demux_NNNNAACTCNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNAACTCNNN_trimmed_trimmed.bam
1.37 GB
demux_NNNNAACTCNNN_trimmed_trimmed_SJ.out.tab
320.86 kB
Cutadapt (single-end)
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed.fastq.gz
454.15 MB
m6a-cd8-tcells-r2hg-treated-donor3-20180420-ju_trimmed_fastqc.zip
481.49 kB
STAR
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
6.40 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed.bam
213.62 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed.bam.bai
3.77 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_SJ.out.tab
139.08 kB
iCount summary
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_single_summary_gene.tsv
747.03 kB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
635 B
m6a-cd8-tcells-vehicle-treated-donor1-20180420-jufastqgz_unmapped_single_summary_type.tsv
268 B
STAR
demux_NNNNATACGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
2.75 MB
demux_NNNNATACGNNN_trimmed_trimmed.bam.bai
1.95 MB
demux_NNNNATACGNNN_trimmed_trimmed.bam
60.69 MB
demux_NNNNATACGNNN_trimmed_trimmed_SJ.out.tab
20.74 kB
demux_NNNNATACGNNN_trimmed_trimmed.bw
22.30 kB
demux_NNNNATACGNNN_trimmed_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
5.34 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed.bam.bai
3.92 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed.bam
173.31 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_SJ.out.tab
145.87 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
3.64 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed.bam
110.95 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed.bam.bai
3.38 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed.bw
27.47 kB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_SJ.out.tab
91.33 kB
FASTQ file (single-end)
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju.fastq.gz
253.61 MB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_fastqc.zip
542.37 kB
iCount summary
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_single_summary_type.tsv
269 B
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_single_summary_gene.tsv
982.09 kB
m6a-cd8-tcells-s2hg-treated-donor3-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
644 B
STAR
demux_NNNNATACGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
2.75 MB
demux_NNNNATACGNNN_trimmed_trimmed.bam
60.70 MB
demux_NNNNATACGNNN_trimmed_trimmed.bam.bai
1.95 MB
demux_NNNNATACGNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNATACGNNN_trimmed_trimmed.bw
22.30 kB
demux_NNNNATACGNNN_trimmed_trimmed_SJ.out.tab
20.84 kB
Cutadapt (single-end)
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed.fastq.gz
247.06 MB
m6a-cd8-tcells-vehicle-treated-donor1-20180420-ju_trimmed_fastqc.zip
488.62 kB
STAR
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
3.14 MB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed.bam
107.25 MB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_SJ.out.tab
91.35 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed.bam.bai
3.19 MB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed.bw
26.94 kB
STAR
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed.bam
186.45 MB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed.bam.bai
3.53 MB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
5.16 MB
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_SJ.out.tab
135.79 kB
iCount xlsites
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.70 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_single.bedgraph
1.68 MB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_skipped.bam
3.07 kB
demux_NNNNTCGAGCTGNNNNN_trimmed_trimmed_single.bed.gz
445.01 kB
STAR
demux_NNNNTGTGGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
100.04 MB
demux_NNNNTGTGGNNN_trimmed_trimmed_SJ.out.tab
191.19 kB
demux_NNNNTGTGGNNN_trimmed_trimmed.bam
1.45 GB
demux_NNNNTGTGGNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNTGTGGNNN_trimmed_trimmed.bam.bai
3.52 MB
FASTQ file (single-end)
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju.fastq.gz
194.66 MB
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_fastqc.zip
534.42 kB
STAR
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
6.84 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed.bam.bai
3.87 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_SJ.out.tab
91.60 kB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed.bam
125.61 MB
STAR
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed.bam.bai
4.02 MB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_SJ.out.tab
187.20 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
9.71 MB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed.bam
323.04 MB
STAR
demux_NNNNTCGCCNNN_trimmed_trimmed.bam.bai
4.75 MB
demux_NNNNTCGCCNNN_trimmed_trimmed.bam
1.82 GB
demux_NNNNTCGCCNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_SJ.out.tab
523.87 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
61.35 MB
STAR
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
4.42 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed.bam.bai
3.29 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed.bam
107.60 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_SJ.out.tab
82.07 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed.bw
27.51 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_stats.txt
1.80 kB
iCount xlsites
demux_NNNNATACGNNN_trimmed_trimmed_skipped.bam
2.92 kB
demux_NNNNATACGNNN_trimmed_trimmed_singleAndMulti.bed.gz
516.53 kB
demux_NNNNATACGNNN_trimmed_trimmed_single.bedgraph
188.10 kB
demux_NNNNATACGNNN_trimmed_trimmed_single.bed.gz
53.72 kB
iCount xlsites
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.80 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single.bedgraph
1.80 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_skipped.bam
3.23 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single.bed.gz
471.33 kB
iCount xlsites
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed_single.bedgraph
234 B
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed_singleAndMulti.bed.gz
101.42 kB
m6a-cd8-tcells-naive-cd8-donor1-20180420-ju_trimmed_single.bed.gz
59.71 kB
iCount summary
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
645 B
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_single_summary_gene.tsv
1.01 MB
m6a-cd8-tcells-naive-cd8-donor2-20180420-jufastqgz_unmapped_single_summary_type.tsv
268 B
STAR
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
4.37 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_SJ.out.tab
82.04 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed.bam.bai
3.29 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed.bw
27.50 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed.bam
107.53 MB
STAR
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
5.34 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed.bam
173.34 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed.bam.bai
3.92 MB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_SJ.out.tab
145.98 kB
iCount summary
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
650 B
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_single_summary_type.tsv
271 B
m6a-cd8-tcells-r2hg-treated-donor3-20180420-jufastqgz_unmapped_single_summary_gene.tsv
1.10 MB
STAR
demux_NNNNGATCGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
127.17 MB
demux_NNNNGATCGNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNGATCGNNN_trimmed_trimmed.bam
1.69 GB
demux_NNNNGATCGNNN_trimmed_trimmed_SJ.out.tab
221.33 kB
demux_NNNNGATCGNNN_trimmed_trimmed.bam.bai
3.78 MB
iCount summary
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_single_summary_type.tsv
266 B
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
637 B
m6a-cd8-tcells-naive-cd8-donor1-20180420-jufastqgz_unmapped_single_summary_gene.tsv
762.65 kB
STAR
demux_NNNNGGAGCNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
75.04 MB
demux_NNNNGGAGCNNN_trimmed_trimmed.bam
2.33 GB
demux_NNNNGGAGCNNN_trimmed_trimmed.bam.bai
5.03 MB
demux_NNNNGGAGCNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNGGAGCNNN_trimmed_trimmed_SJ.out.tab
552.16 kB
iCount summary
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_single_summary_type.tsv
264 B
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_single_summary_gene.tsv
561.07 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_single_summary_subtype.tsv
633 B
STAR
demux_NNNNGATCGNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
128.17 MB
demux_NNNNGATCGNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNGATCGNNN_trimmed_trimmed.bam.bai
3.83 MB
demux_NNNNGATCGNNN_trimmed_trimmed.bam
1.70 GB
demux_NNNNGATCGNNN_trimmed_trimmed_SJ.out.tab
224.44 kB
iCount summary
demux_NNNNGATCGNNN_trimmed_trimmed_single_summary_gene.tsv
643.06 kB
demux_NNNNGATCGNNN_trimmed_trimmed_single_summary_subtype.tsv
647 B
demux_NNNNGATCGNNN_trimmed_trimmed_single_summary_type.tsv
269 B
iCount xlsites
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_single.bed.gz
283.66 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
1.81 MB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_skipped.bam
3.21 kB
demux_NNNNCACAGTGCNNNNN_trimmed_trimmed_single.bedgraph
1.06 MB
Cutadapt (single-end)
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed.fastq.gz
18.46 MB
demux_NNNNGTTTCATTNNNNN_trimmed_trimmed_fastqc.zip
524.62 kB
iCount summary
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single_summary_type.tsv
266 B
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single_summary_subtype.tsv
637 B
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_single_summary_gene.tsv
704.26 kB
iCount xlsites
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_single.bed.gz
587.11 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_single.bedgraph
2.26 MB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_skipped.bam
3.62 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_singleAndMulti.bed.gz
3.35 MB
Cutadapt (single-end)
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_fastqc.zip
468.37 kB
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed.fastq.gz
39.70 MB
iCount summary
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_single_summary_type.tsv
267 B
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_single_summary_subtype.tsv
641 B
demux_NNNNTCGAGGTCNNNNN_trimmed_trimmed_single_summary_gene.tsv
794.42 kB
iCount xlsites
demux_NNNNTGTGGNNN_trimmed_trimmed_single.bed.gz
390.07 kB
demux_NNNNTGTGGNNN_trimmed_trimmed_skipped.bam
5.29 kB
demux_NNNNTGTGGNNN_trimmed_trimmed_singleAndMulti.bed.gz
1.99 MB
demux_NNNNTGTGGNNN_trimmed_trimmed_single.bedgraph
1.46 MB
iCount xlsites
demux_NNNNGATCGNNN_trimmed_trimmed_single.bed.gz
455.71 kB
demux_NNNNGATCGNNN_trimmed_trimmed_skipped.bam
8.04 kB
demux_NNNNGATCGNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.34 MB
demux_NNNNGATCGNNN_trimmed_trimmed_single.bedgraph
1.71 MB
iCount summary
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_single_summary_type.tsv
266 B
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_single_summary_subtype.tsv
637 B
demux_NNNNCACAGGGANNNNN_trimmed_trimmed_single_summary_gene.tsv
671.33 kB
iCount summary
demux_NNNNATACGNNN_trimmed_trimmed_single_summary_subtype.tsv
627 B
demux_NNNNATACGNNN_trimmed_trimmed_single_summary_type.tsv
257 B
demux_NNNNATACGNNN_trimmed_trimmed_single_summary_gene.tsv
152.09 kB
Cutadapt (single-end)
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed_fastqc.zip
455.71 kB
demux_NNNNGTTTCAGGNNNNN_trimmed_trimmed.fastq.gz
21.71 MB
iCount xlsites
demux_NNNNCACAGNNN_trimmed_trimmed_single.bedgraph
3.52 MB
demux_NNNNCACAGNNN_trimmed_trimmed_skipped.bam
3.69 kB
demux_NNNNCACAGNNN_trimmed_trimmed_single.bed.gz
882.33 kB
demux_NNNNCACAGNNN_trimmed_trimmed_singleAndMulti.bed.gz
3.59 MB
iCount summary
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_single_summary_subtype.tsv
634 B
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_single_summary_type.tsv
264 B
demux_NNNNTCGAGTTANNNNN_trimmed_trimmed_single_summary_gene.tsv
584.25 kB
iCount xlsites
demux_NNNNGATCGNNN_trimmed_trimmed_single.bed.gz
465.09 kB
demux_NNNNGATCGNNN_trimmed_trimmed_skipped.bam
8.04 kB
demux_NNNNGATCGNNN_trimmed_trimmed_singleAndMulti.bed.gz
2.40 MB
demux_NNNNGATCGNNN_trimmed_trimmed_single.bedgraph
1.74 MB
iCount summary
demux_NNNNGATCGNNN_trimmed_trimmed_single_summary_subtype.tsv
650 B
demux_NNNNGATCGNNN_trimmed_trimmed_single_summary_type.tsv
269 B
demux_NNNNGATCGNNN_trimmed_trimmed_single_summary_gene.tsv
649.52 kB
Cutadapt (single-end)
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed.fastq.gz
14.27 MB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_fastqc.zip
501.90 kB
iCount xlsites
demux_NNNNCCTGCNNN_trimmed_trimmed_single.bed.gz
796.78 kB
demux_NNNNCCTGCNNN_trimmed_trimmed_skipped.bam
4.84 kB
demux_NNNNCCTGCNNN_trimmed_trimmed_singleAndMulti.bed.gz
3.02 MB
demux_NNNNCCTGCNNN_trimmed_trimmed_single.bedgraph
3.20 MB
iCount summary
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single_summary_type.tsv
265 B
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single_summary_gene.tsv
551.34 kB
demux_NNNNGTTTCTTANNNNN_trimmed_trimmed_single_summary_subtype.tsv
633 B
STAR
demux_NNNNCCTGCNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
48.33 MB
demux_NNNNCCTGCNNN_trimmed_trimmed.bam
1.41 GB
demux_NNNNCCTGCNNN_trimmed_trimmed_stats.txt
1.81 kB
demux_NNNNCCTGCNNN_trimmed_trimmed_SJ.out.tab
292.25 kB
demux_NNNNCCTGCNNN_trimmed_trimmed.bam.bai
4.10 MB
iCount xlsites
demux_NNNNGATCGNNN_trimmed_trimmed_singleAndMulti.bed.gz
3.21 MB
demux_NNNNGATCGNNN_trimmed_trimmed_single.bed.gz
791.49 kB
demux_NNNNGATCGNNN_trimmed_trimmed_skipped.bam
3.08 kB
demux_NNNNGATCGNNN_trimmed_trimmed_single.bedgraph
3.12 MB
iCount xlsites
demux_NNNNATACGNNN_trimmed_trimmed_single.bed.gz
53.76 kB
demux_NNNNATACGNNN_trimmed_trimmed_singleAndMulti.bed.gz
516.70 kB
demux_NNNNATACGNNN_trimmed_trimmed_single.bedgraph
188.26 kB
demux_NNNNATACGNNN_trimmed_trimmed_skipped.bam
2.92 kB
iCount summary
demux_NNNNGATCGNNN_trimmed_trimmed_single_summary_gene.tsv
825.82 kB
demux_NNNNGATCGNNN_trimmed_trimmed_single_summary_subtype.tsv
639 B
demux_NNNNGATCGNNN_trimmed_trimmed_single_summary_type.tsv
264 B
iCount summary
demux_NNNNTCGAGNNN_trimmed_trimmed_single_summary_type.tsv
258 B
demux_NNNNTCGAGNNN_trimmed_trimmed_single_summary_subtype.tsv
577 B
demux_NNNNTCGAGNNN_trimmed_trimmed_single_summary_gene.tsv
108.86 kB
iCount summary
demux_NNNNCATACNNN_trimmed_trimmed_single_summary_type.tsv
271 B
demux_NNNNCATACNNN_trimmed_trimmed_single_summary_gene.tsv
1.19 MB
demux_NNNNCATACNNN_trimmed_trimmed_single_summary_subtype.tsv
650 B
iCount xlsites
demux_NNNNAACTCNNN_trimmed_trimmed_skipped.bam
3.81 kB
demux_NNNNAACTCNNN_trimmed_trimmed_single.bed.gz
870.69 kB
demux_NNNNAACTCNNN_trimmed_trimmed_single.bedgraph
3.51 MB
demux_NNNNAACTCNNN_trimmed_trimmed_singleAndMulti.bed.gz
3.32 MB
iCount summary
demux_NNNNAACTCNNN_trimmed_trimmed_single_summary_subtype.tsv
646 B
demux_NNNNAACTCNNN_trimmed_trimmed_single_summary_type.tsv
268 B
demux_NNNNAACTCNNN_trimmed_trimmed_single_summary_gene.tsv
897.81 kB
iCount summary
demux_NNNNTCGCCNNN_trimmed_trimmed_single_summary_type.tsv
270 B
demux_NNNNTCGCCNNN_trimmed_trimmed_single_summary_subtype.tsv
645 B
demux_NNNNTCGCCNNN_trimmed_trimmed_single_summary_gene.tsv
1.04 MB
Cutadapt (single-end)
demux_NNNNCATACNNN_trimmed_trimmed.fastq.gz
453.40 MB
demux_NNNNCATACNNN_trimmed_trimmed_fastqc.zip
489.19 kB
iCount summary
demux_NNNNGTTTCNNN_trimmed_trimmed_single_summary_type.tsv
269 B
demux_NNNNGTTTCNNN_trimmed_trimmed_single_summary_gene.tsv
1.09 MB
demux_NNNNGTTTCNNN_trimmed_trimmed_single_summary_subtype.tsv
645 B
iCount summary
demux_NNNNGGAGCNNN_trimmed_trimmed_single_summary_type.tsv
269 B
demux_NNNNGGAGCNNN_trimmed_trimmed_single_summary_subtype.tsv
650 B
demux_NNNNGGAGCNNN_trimmed_trimmed_single_summary_gene.tsv
1.11 MB
iCount summary
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_single_summary_type.tsv
275 B
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_single_summary_subtype.tsv
654 B
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_single_summary_gene.tsv
1.23 MB
iCount reads proxy
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped.fastq.gz
67.87 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-jufastqgz_unmapped_fastqc.zip
500.66 kB
Cutadapt (single-end)
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed.fastq.gz
221.65 MB
m6a-cd8-t-cells-day5-activated-donor3-totalrna-20190110-ju_trimmed_fastqc.zip
485.04 kB
iCount summary
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_summary_subtype.tsv
653 B
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_summary_gene.tsv
1.22 MB
m6A_CD8 T cells_Non_activated_Donor3_polyA_20190110_JU_grouped_summary_type.tsv
270 B
iCount summary
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_summary_subtype.tsv
650 B
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_summary_gene.tsv
1.13 MB
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_summary_type.tsv
269 B
iCount annotate
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_annotated.bed.gz
6.97 MB
m6A_CD8 T cells_Day5_activated_Donor3_polyA_20190110_JU_grouped_annotated.bedgraph
24.53 MB
iCount summary
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
469 B
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.05 MB
m6a-cd8-t-cells-ccr7pos-ropos-totalrna-donor1-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.00 kB
Cutadapt (single-end)
demux_NNNNTGTGGNNN_trimmed_trimmed.fastq.gz
295.93 MB
demux_NNNNTGTGGNNN_trimmed_trimmed_fastqc.zip
513.83 kB
Cutadapt (single-end)
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed.fastq.gz
13.97 MB
demux_NNNNGTTTCTGCNNNNN_trimmed_trimmed_trimmed_fastqc.zip
474.90 kB
iCount annotate
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_annotated.bed.gz
5.50 MB
m6A_CD8 T cells_Day1_activated_Donor3_polyA_20190110_JU_grouped_annotated.bedgraph
19.03 MB
iCount reads proxy
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped.fastq.gz
85.75 MB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-jufastqgz-3_unmapped_fastqc.zip
441.86 kB
Cutadapt (single-end)
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed_fastqc.zip
495.92 kB
demux_NNNNTCGCCNNN_trimmed_trimmed_trimmed.fastq.gz
252.31 MB
iCount summary
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.23 MB
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
467 B
m6a-cd8-t-cells-day1-activated-donor7-polya-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
975 B
iCount summary
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
988 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m6a-cd8-t-cells-day5-activated-donor5-polya-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.43 MB
iCount xlsites
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_skipped.bam
3.96 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bed.gz
42.36 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_singleAndMulti.bed.gz
80.53 kB
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_single.bedgraph
258 B
m6a-cd8-t-cells-day1-activated-donor4-polya-20190312-ju_trimmed_reads_single.bed.gz
43.19 kB
iCount summary
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
472 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
985 B
m6a-cd8-t-cells-non-activated-donors5-6-polya-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.33 MB
iCount summary
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
464 B
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-cd8-t-cells-non-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.34 MB
iCount summary
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single_summary_type.tsv
474 B
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single_summary_gene.tsv
1.69 MB
m6a-cd8-t-cells-day5-activated-donor4-polya-20190312-jufastqgz-3_unmapped_single_summary_subtype.tsv
986 B
human Tcell miCLIP
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