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Folder icon786O miCLIP

Charlotte Capitanchik
April 16, 2018

No Sample

Cutadapt (single-end)
fastqc
Directory
m1a-786o-20180420-ju_trimmed_fastqc.zip
502.34 kB
report.txt
689 B
m1a-786o-20180420-ju_trimmed.fastq.gz
418.90 MB
Paraclu
peaks.bed.gz
287 B
iCount RNA-maps
results.tar.gz
400.58 kB
iCount RNA-maps
results.tar.gz
244.36 kB
STAR
demux_NNNNATCTGATTNNNNN_SJ.out.tab
81.04 kB
demux_NNNNATCTGATTNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGATTNNNNN.bam
218.11 MB
demux_NNNNATCTGATTNNNNN.bam.bai
3.10 MB
demux_NNNNATCTGATTNNNNN_unmapped.out.mate1.fastq.gz
19.24 MB
demux_NNNNATCTGATTNNNNN_unmapped.out.mate1.fastq.gz
19.24 MB
demux_NNNNATCTGATTNNNNN.bam
218.11 MB
demux_NNNNATCTGATTNNNNN.bam.bai
3.10 MB
demux_NNNNATCTGATTNNNNN_SJ.out.tab
81.04 kB
demux_NNNNATCTGATTNNNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCTGATTNNNNN.fastq.gz
42.25 MB
stderr.txt
1.05 kB
demux_NNNNATCTGATTNNNNN_fastqc.zip
395.65 kB
fastqc
Directory
demux_NNNNATCTGATTNNNNN.fastq.gz
42.25 MB
stderr.txt
1.05 kB
demux_NNNNATCTGATTNNNNN_fastqc.zip
395.65 kB
iCount xlsites
demux_NNNNACCTTNNN_skipped.bam
637.25 kB
demux_NNNNACCTTNNN_unique.bed.gz
269.67 kB
demux_NNNNACCTTNNN_unique.bedgraph
1022.41 kB
demux_NNNNACCTTNNN_multi.bed.gz
1.79 MB
demux_NNNNACCTTNNN_skipped.bam
637.25 kB
demux_NNNNACCTTNNN_unique.bed.gz
269.67 kB
demux_NNNNACCTTNNN_unique.bedgraph
1022.41 kB
demux_NNNNACCTTNNN_multi.bed.gz
1.79 MB
Reads (single-end)
demux_NNNNTCGAGNNN.fastq.gz
68.48 MB
fastqc
Directory
demux_NNNNTCGAGNNN_fastqc.zip
459.49 kB
stderr.txt
975 B
Reads (single-end)
demux_NNNNGATCGNNN.fastq.gz
67.96 MB
fastqc
Directory
demux_NNNNGATCGNNN_fastqc.zip
444.88 kB
stderr.txt
975 B
iCount group
test_to_get_sumary_from_grouping_grouped.bed.gz
3.40 MB
test_to_get_sumary_from_grouping_grouped.bedgraph
15.96 MB
Reads (single-end)
stderr.txt
975 B
demux_NNNNTTTAANNN_fastqc.zip
487.17 kB
demux_NNNNTTTAANNN.fastq.gz
38.94 MB
fastqc
Directory
demux_NNNNTTTAANNN.fastq.gz
38.94 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNTTTAANNN_fastqc.zip
487.17 kB
iCount RNA-maps
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single.tar.gz
1.13 MB
iCount summary
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
470 B
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.42 MB
iCount RNA-maps
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single.tar.gz
772.45 kB
iCount RNA-maps
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single.tar.gz
840.23 kB
STAR
m6a-786o-ctrl-24r-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-24r-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
18.10 MB
m6a-786o-ctrl-24r-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-24r-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-24r-20180106-ju_trimmed.bam
70.64 MB
iCount clusters
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_clustered.bedgraph
60.86 kB
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_clustered.bed.gz
41.71 kB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_unmapped.out.mate1.fastq.gz
937.12 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam.bai
1.53 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam
2.21 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bw
15.76 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_SJ.out.tab
2.42 kB
STAR
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
1.27 MB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.bam
7.55 MB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.bam.bai
1.57 MB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_SJ.out.tab
8.16 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.bw
18.35 kB
iCount group
test_m6A_786O_NoQ15min_2Reps_grouped.bed.gz
427.29 kB
test_m6A_786O_NoQ15min_2Reps_grouped.bedgraph
1.67 MB
Paraclu
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
195 B
K-mers
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped.tar.gz
382.27 kB
iCount summary
demux_NNNNATACGNNN_unique_summary.tsv_summary_subtype.tsv
623 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_gene.tsv
146.96 kB
demux_NNNNATACGNNN_unique_summary.tsv_summary_type.tsv
258 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_subtype.tsv
623 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_gene.tsv
146.96 kB
demux_NNNNATACGNNN_unique_summary.tsv_summary_type.tsv
258 B
iCount summary
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
440.99 kB
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
440.99 kB
iCount xlsites
demux_NNNNGTATTNNN_tmp_multi.bed.gz
28.33 kB
demux_NNNNGTATTNNN_tmp_unique.bed.gz
2.44 kB
demux_NNNNGTATTNNN_tmp_skipped.bam
35.32 kB
demux_NNNNGTATTNNN_tmp_multi.bed.gz
28.33 kB
demux_NNNNGTATTNNN_tmp_unique.bed.gz
2.44 kB
demux_NNNNGTATTNNN_tmp_skipped.bam
35.32 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-15min-20180106-ju.fastq.gz
39.41 MB
m6a-786o-noq-dm-akg-15min-20180106-ju_fastqc.zip
546.88 kB
stderr.txt
1.38 kB
iCount xlsites
demux_NNNNAGGCANNN_tmp_unique.bed.gz
436 B
demux_NNNNAGGCANNN_tmp_multi.bed.gz
4.77 kB
demux_NNNNAGGCANNN_tmp_skipped.bam
10.62 kB
demux_NNNNAGGCANNN_tmp_unique.bed.gz
436 B
demux_NNNNAGGCANNN_tmp_multi.bed.gz
4.77 kB
demux_NNNNAGGCANNN_tmp_skipped.bam
10.62 kB
iCount xlsites
demux_NNNNATACGNNN_skipped.bam
22.04 kB
demux_NNNNATACGNNN_unique.bed.gz
6.88 kB
demux_NNNNATACGNNN_multi.bed.gz
98.85 kB
demux_NNNNATACGNNN_skipped.bam
22.04 kB
demux_NNNNATACGNNN_unique.bed.gz
6.88 kB
demux_NNNNATACGNNN_multi.bed.gz
98.85 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
401.45 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
3.67 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.63 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
14.40 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.26 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.79 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam
1.29 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam.bai
1.52 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_unmapped.out.mate1.fastq.gz
328.05 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_SJ.out.tab
1.95 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bw
15.78 kB
iCount summary
demux_NNNNGATCGNNN_unique_summary.tsv_summary_subtype.tsv
640 B
demux_NNNNGATCGNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNGATCGNNN_unique_summary.tsv_summary_gene.tsv
810.13 kB
iCount reads proxy
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
454.61 kB
fastqc
Directory
stderr.txt
1.89 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
609.74 kB
iCount clusters
m1A_786O_NoQ 4H_2Reps_grouped_clustered.bedgraph
57.15 kB
m1A_786O_NoQ 4H_2Reps_grouped_clustered.bed.gz
39.97 kB
iCount clusters
m6A_786O__20180420_JU_1Rep_grouped_clustered.bed.gz
6.62 kB
m6A_786O__20180420_JU_1Rep_grouped_clustered.bedgraph
8.66 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCATTTNNN.fastq.gz
27.81 MB
demux_NNNNCATTTNNN_fastqc.zip
470.22 kB
stderr.txt
975 B
fastqc
Directory
demux_NNNNCATTTNNN.fastq.gz
27.81 MB
demux_NNNNCATTTNNN_fastqc.zip
470.22 kB
stderr.txt
975 B
iCount summary
m6a-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
461 B
m6a-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
479.72 kB
m6a-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
1014 B
iCount xlsites
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_singleAndMulti.bed.gz
117.97 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bed.gz
7.67 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_reads_single.bed.gz
8.26 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bedgraph
24.13 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-ctrl-24r-20180106-ju_trimmed.fastq.gz
59.37 MB
report.txt
666 B
STAR
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_unmapped.out.mate1.fastq.gz
18.82 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed.bam
147.82 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_stats.txt
1.79 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed.bam.bai
20.56 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed.bw
106.66 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_SJ.out.tab
0 B
STAR
m1a-786o-ctrl-15min-20180413-ju-2_trimmed.bam.bai
20.56 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed.bam
95.64 MB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_unmapped.out.mate1.fastq.gz
11.42 MB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_SJ.out.tab
0 B
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_stats.txt
1.78 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed.bw
106.54 kB
STAR
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
41.09 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.71 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
5.88 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.79 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
81.98 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.71 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
m6a-786o-ctrl-15min-20180106-ju_trimmed.fastq.gz
30.95 MB
STAR
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
18.66 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
41.23 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bw
104.68 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam
61.13 MB
iCount xlsites
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
26.08 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
270 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
19.81 kB
iCount reads proxy
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
41.23 MB
fastqc
Directory
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
772.88 kB
stderr.txt
2.16 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
m6a-786o-ctrl-3min-20180106-ju_trimmed.fastq.gz
57.22 MB
iCount xlsites
demux_NNNNTCACANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNTCACANNN_trimmed_single.bed.gz
377.77 kB
demux_NNNNTCACANNN_trimmed_reads_single.bed.gz
438.12 kB
demux_NNNNTCACANNN_trimmed_single.bedgraph
1.45 MB
demux_NNNNTCACANNN_trimmed_singleAndMulti.bed.gz
3.38 MB
iCount summary
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
648 B
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
1.06 MB
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_summary.tsv_summary_type.tsv
270 B
Paraclu
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
164 B
Paraclu
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
7.66 kB
K-mers
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped.tar.gz
326.68 kB
iCount reads proxy
m1a_786o_noq-15min_20180413_ju_unmapped.fastq.gz
70.87 MB
fastqc
Directory
stderr.txt
1.42 kB
m1a_786o_noq-15min_20180413_ju_unmapped_fastqc.zip
543.89 kB
iCount summary
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
589 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
260 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
182.11 kB
iCount annotate
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_annotated.bedgraph
1.25 MB
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_annotated.bed.gz
454.36 kB
iCount xlsites
demux_NNNNCTGATNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCTGATNNN_trimmed_reads_single.bed.gz
99.46 kB
demux_NNNNCTGATNNN_trimmed_single.bed.gz
89.01 kB
demux_NNNNCTGATNNN_trimmed_singleAndMulti.bed.gz
1.00 MB
demux_NNNNCTGATNNN_trimmed_single.bedgraph
334.35 kB
iCount group
m1A_786O_Ctrl 4H_2Reps_grouped.bedgraph
1.53 MB
m1A_786O_Ctrl 4H_2Reps_grouped.bed.gz
400.81 kB
Paraclu
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.57 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju.fastq.gz
36.77 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_fastqc.zip
508.22 kB
stderr.txt
1.75 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
726 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
37.88 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
500.70 kB
Paraclu
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
12.19 kB
Paraclu
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
10.36 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNGCTTGCGTNNNNN_trimmed.fastq.gz
18.18 MB
demux_NNNNGCTTGCGTNNNNN_trimmed_fastqc.zip
398.56 kB
report.txt
672 B
iCount xlsites
demux_NNNNCATACNNN_trimmed_singleAndMulti.bed.gz
3.31 MB
demux_NNNNCATACNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCATACNNN_trimmed_reads_single.bed.gz
498.76 kB
demux_NNNNCATACNNN_trimmed_single.bedgraph
1.78 MB
demux_NNNNCATACNNN_trimmed_single.bed.gz
462.60 kB
iCount summary
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
747.00 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.56 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.fastq.gz
67.78 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
501.95 kB
iCount reads proxy
fastqc
Directory
m6a_786o_ctrl-4h_20180413_ju_unmapped.fastq.gz
21.04 MB
stderr.txt
1.38 kB
m6a_786o_ctrl-4h_20180413_ju_unmapped_fastqc.zip
492.73 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
353.49 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.47 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
1.67 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.80 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.30 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNTTTAANNN_trimmed.fastq.gz
34.50 MB
demux_NNNNTTTAANNN_trimmed_fastqc.zip
469.45 kB
iCount xlsites
m6a-786o-ctrl-4h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_single.bed.gz
78.33 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_singleAndMulti.bed.gz
118.54 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_single.bedgraph
189 B
STAR
m6a-786o-noq-3-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
18.02 MB
m6a-786o-noq-3-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-3-20180106-ju_trimmed.bam
94.90 MB
m6a-786o-noq-3-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-3-20180106-ju_trimmed.bw
106.39 kB
m6a-786o-noq-3-20180106-ju_trimmed.bam.bai
20.49 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNATCTGATTNNNNN_trimmed.fastq.gz
36.34 MB
demux_NNNNATCTGATTNNNNN_trimmed_fastqc.zip
396.33 kB
report.txt
675 B
Cutadapt (single-end)
fastqc
Directory
report.txt
726 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
49.88 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
511.01 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
696 B
m6a-786o-ctrl-15-20180106-ju_trimmed.fastq.gz
32.28 MB
m6a-786o-ctrl-15-20180106-ju_trimmed_fastqc.zip
491.58 kB
iCount xlsites
demux_NNNNGCTCTNNN_trimmed_skipped.bam
3.14 kB
demux_NNNNGCTCTNNN_trimmed_singleAndMulti.bed.gz
1.63 MB
demux_NNNNGCTCTNNN_trimmed_single.bed.gz
264.55 kB
demux_NNNNGCTCTNNN_trimmed_single.bedgraph
1008.60 kB
STAR
demux_NNNNGAATANNN_trimmed_unmapped.out.mate1.fastq.gz
20.78 MB
demux_NNNNGAATANNN_trimmed.bam.bai
3.76 MB
demux_NNNNGAATANNN_trimmed.bam
345.75 MB
demux_NNNNGAATANNN_trimmed_SJ.out.tab
150.41 kB
demux_NNNNGAATANNN_trimmed_stats.txt
1.80 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNGAATANNN_trimmed.fastq.gz
54.19 MB
report.txt
669 B
demux_NNNNGAATANNN_trimmed_fastqc.zip
435.10 kB
STAR
m1a-786o-20180420-jufastqgz_unmapped.bam.bai
2.91 MB
m1a-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
53.96 MB
m1a-786o-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m1a-786o-20180420-jufastqgz_unmapped.bam
218.87 MB
m1a-786o-20180420-jufastqgz_unmapped.bw
28.36 kB
m1a-786o-20180420-jufastqgz_unmapped_SJ.out.tab
305.87 kB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNTTTAANNN.fastq.gz
40.16 MB
demux_NNNNTTTAANNN_fastqc.zip
470.77 kB
Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNGCTTGTTANNNNN.fastq.gz
34.23 MB
demux_NNNNGCTTGTTANNNNN_fastqc.zip
388.58 kB
STAR
demux_NNNNGCTTGCTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
5.61 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGCTGNNNNN_trimmed.bam.bai
2.63 MB
demux_NNNNGCTTGCTGNNNNN_trimmed.bam
106.83 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_SJ.out.tab
48.67 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAGACTNNN.fastq.gz
23.94 MB
stderr.txt
975 B
demux_NNNNAGACTNNN_fastqc.zip
444.68 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-20180420-ju.fastq.gz
415.44 MB
stderr.txt
1015 B
m6a-786o-20180420-ju_fastqc.zip
539.86 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
m62a-786o-ctrl-15min-20180413-ju_trimmed.fastq.gz
513.67 MB
iCount group
test_to_get_sumary_from_grouping_grouped.bed.gz
3.40 MB
test_to_get_sumary_from_grouping_grouped.bedgraph
15.96 MB
iCount annotate
test_to_get_sumary_from_grouping_grouped_annotated.bed.gz
4.61 MB
test_to_get_sumary_from_grouping_grouped_annotated.bedgraph
15.94 MB
iCount peaks
test_to_get_sumary_from_grouping_grouped_peaks.bedgraph
2.21 MB
test_to_get_sumary_from_grouping_grouped_peaks.bed.gz
575.39 kB
test_to_get_sumary_from_grouping_grouped_scores.tsv.gz
2.97 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAANNN.fastq.gz
385.74 MB
stderr.txt
975 B
demux_NNNNCAGAANNN_fastqc.zip
473.27 kB
iCount annotate
test_to_get_sumary_from_grouping_grouped_annotated.bed.gz
4.61 MB
test_to_get_sumary_from_grouping_grouped_annotated.bedgraph
15.94 MB
iCount xlsites
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
120.10 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
106.15 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
274.25 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
394.12 kB
iCount group
test_to_get_sumary_from_grouping_grouped.bed.gz
3.40 MB
test_to_get_sumary_from_grouping_grouped.bedgraph
15.96 MB
iCount annotate
test_to_get_sumary_from_grouping_grouped_annotated.bedgraph
15.94 MB
test_to_get_sumary_from_grouping_grouped_annotated.bed.gz
4.61 MB
iCount peaks
test_to_get_sumary_from_grouping_grouped_peaks.bed.gz
575.39 kB
test_to_get_sumary_from_grouping_grouped_scores.tsv.gz
2.97 MB
test_to_get_sumary_from_grouping_grouped_peaks.bedgraph
2.21 MB
iCount summary
test_to_get_sumary_from_grouping_grouped_summary.tsv_summary_subtype.tsv
647 B
test_to_get_sumary_from_grouping_grouped_summary.tsv_summary_gene.tsv
1.09 MB
test_to_get_sumary_from_grouping_grouped_summary.tsv_summary_type.tsv
272 B
iCount peaks
test_to_get_sumary_from_grouping_grouped_scores.tsv.gz
2.97 MB
test_to_get_sumary_from_grouping_grouped_peaks.bedgraph
2.21 MB
test_to_get_sumary_from_grouping_grouped_peaks.bed.gz
575.39 kB
iCount summary
test_to_get_sumary_from_grouping_grouped_summary.tsv_summary_type.tsv
272 B
test_to_get_sumary_from_grouping_grouped_summary.tsv_summary_gene.tsv
1.09 MB
test_to_get_sumary_from_grouping_grouped_summary.tsv_summary_subtype.tsv
647 B
iCount summary
test_to_get_sumary_from_grouping_grouped_summary.tsv_summary_type.tsv
272 B
test_to_get_sumary_from_grouping_grouped_summary.tsv_summary_gene.tsv
1.09 MB
test_to_get_sumary_from_grouping_grouped_summary.tsv_summary_subtype.tsv
647 B
FASTQ file (single-end)
m62a-786o-ctrl-4h-20180413-ju.fastq.gz
400.41 MB
fastqc
Directory
stderr.txt
1.17 kB
m62a-786o-ctrl-4h-20180413-ju_fastqc.zip
516.63 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-3min-20180413-ju.fastq.gz
103.90 MB
m1a-786o-noq-3min-20180413-ju_fastqc.zip
557.07 kB
stderr.txt
1.17 kB
FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2.fastq.gz
75.22 MB
fastqc
Directory
stderr.txt
1.46 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_fastqc.zip
550.60 kB
FASTQ file (single-end)
fastqc
Directory
igg-786o-mouse-igg-20180413-ju-2.fastq.gz
325.62 MB
stderr.txt
1.23 kB
igg-786o-mouse-igg-20180413-ju-2_fastqc.zip
503.56 kB
iCount reads proxy
fastqc
Directory
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped.fastq.gz
155.53 MB
stderr.txt
1.58 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_fastqc.zip
499.49 kB
iCount reads proxy
stderr.txt
1.85 kB
fastqc
Directory
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped.fastq.gz
125.97 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_fastqc.zip
503.59 kB
iCount summary
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
731.41 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
467 B
iCount reads proxy
fastqc
Directory
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped.fastq.gz
133.12 MB
stderr.txt
1.56 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_fastqc.zip
506.88 kB
iCount reads proxy
fastqc
Directory
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_fastqc.zip
499.81 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped.fastq.gz
203.77 MB
stderr.txt
1.64 kB
iCount RNA-maps
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single.tar.gz
498.06 kB
iCount summary
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
470 B
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
866.27 kB
iCount RNA-maps
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single.tar.gz
458.18 kB
Paraclu
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
5.24 kB
Paraclu
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
4.88 kB
iCount clusters
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_clustered.bedgraph
67.86 kB
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_clustered.bed.gz
45.08 kB
iCount RNA-maps
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single.tar.gz
474.12 kB
Paraclu
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
6.79 kB
K-mers
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
939 B
K-mers
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
1.04 kB
Cutadapt (single-end)
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.fastq.gz
318.35 MB
report.txt
679 B
fastqc
Directory
K-mers
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
1.10 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
m62a-786o-noq-15min-20180413-ju_trimmed.fastq.gz
452.83 MB
iCount summary
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
469 B
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
799.31 kB
iCount RNA-maps
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single.tar.gz
485.87 kB
Paraclu
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
5.64 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
m62a-786o-ctrl-4h-20180413-ju_trimmed.fastq.gz
384.66 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
665 B
m62a-786o-noq-4h-20180413-ju_trimmed.fastq.gz
305.93 MB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.fastq.gz
366.71 MB
report.txt
677 B
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
m62a-786o-ctrl-15min-20180413-ju_trimmed.fastq.gz
513.67 MB
STAR
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam
468.16 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_stats.txt
1.78 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
125.97 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_SJ.out.tab
0 B
STAR
m62a-786o-ctrl-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
155.53 MB
m62a-786o-ctrl-4h-20180413-ju_trimmed.bam
580.75 MB
m62a-786o-ctrl-4h-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-ctrl-4h-20180413-ju_trimmed_stats.txt
1.78 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
101.44 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bed.gz
73.01 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bedgraph
252 B
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_reads_single.bed.gz
85.73 kB
STAR
m62a-786o-noq-4h-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-noq-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
133.12 MB
m62a-786o-noq-4h-20180413-ju_trimmed_stats.txt
1.78 kB
m62a-786o-noq-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m62a-786o-noq-4h-20180413-ju_trimmed.bam
459.83 MB
iCount xlsites
m62a-786o-noq-15min-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-noq-15min-20180413-ju_trimmed_reads_single.bed.gz
89.88 kB
m62a-786o-noq-15min-20180413-ju_trimmed_single.bed.gz
76.99 kB
m62a-786o-noq-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
106.35 kB
m62a-786o-noq-15min-20180413-ju_trimmed_single.bedgraph
228 B
iCount reads proxy
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped.fastq.gz
153.07 MB
fastqc
Directory
stderr.txt
1.79 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_fastqc.zip
504.01 kB
STAR
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam
548.90 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
153.07 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam.bai
336 B
STAR
m62a-786o-ctrl-15min-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-ctrl-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
203.77 MB
m62a-786o-ctrl-15min-20180413-ju_trimmed.bam
772.93 MB
m62a-786o-ctrl-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m62a-786o-noq-4h-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-noq-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
105.74 kB
m62a-786o-noq-4h-20180413-ju_trimmed_single.bedgraph
222 B
m62a-786o-noq-4h-20180413-ju_trimmed_single.bed.gz
75.43 kB
m62a-786o-noq-4h-20180413-ju_trimmed_reads_single.bed.gz
88.21 kB
STAR
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped.bam
513.49 MB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped.bam.bai
3.22 MB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_SJ.out.tab
187.52 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
62.75 MB
iCount xlsites
m62a-786o-ctrl-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
119.18 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_single.bed.gz
83.71 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_reads_single.bed.gz
98.53 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-ctrl-15min-20180413-ju_trimmed_single.bedgraph
230 B
STAR
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
79.98 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped.bam.bai
3.56 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_stats.txt
1.82 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped.bam
642.55 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_SJ.out.tab
193.56 kB
STAR
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped.bam.bai
3.05 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
47.93 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped.bam
390.14 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_SJ.out.tab
129.15 kB
iCount xlsites
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single.bed.gz
350.34 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_skipped.bam
3.51 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.42 MB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
416.90 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single.bedgraph
1.34 MB
iCount summary
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
470 B
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
790.21 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.02 kB
iCount xlsites
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.25 MB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single.bed.gz
256.32 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single.bedgraph
979.46 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_skipped.bam
5.15 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
300.23 kB
STAR
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
62.63 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped.bam.bai
3.26 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_SJ.out.tab
144.97 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped.bam
483.93 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
iCount xlsites
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bed.gz
75.80 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
105.42 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_reads_single.bed.gz
88.54 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bedgraph
246 B
iCount summary
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
467 B
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
730.41 kB
iCount xlsites
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_skipped.bam
5.90 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single.bed.gz
380.71 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.73 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
448.20 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single.bedgraph
1.45 MB
iCount summary
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
907.56 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.02 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
475 B
STAR
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped.bam.bai
3.19 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped.bam
476.20 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
59.25 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_SJ.out.tab
140.84 kB
iCount clusters
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_clustered.bed.gz
35.92 kB
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_clustered.bedgraph
52.57 kB
iCount xlsites
demux_NNNNGAATANNN_tmp_skipped.bam
9.86 kB
demux_NNNNGAATANNN_tmp_multi.bed.gz
3.29 kB
demux_NNNNGAATANNN_tmp_unique.bed.gz
489 B
demux_NNNNGAATANNN_tmp_skipped.bam
9.86 kB
demux_NNNNGAATANNN_tmp_multi.bed.gz
3.29 kB
demux_NNNNGAATANNN_tmp_unique.bed.gz
489 B
STAR
demux_NNNNGAATANNN_tmp.bam
123.15 kB
demux_NNNNGAATANNN_tmp.bam.bai
1.05 MB
demux_NNNNGAATANNN_tmp_SJ.out.tab
110 B
demux_NNNNGAATANNN_tmp_unmapped.out.mate1.fastq.gz
130.77 kB
demux_NNNNGAATANNN_tmp_stats.txt
1.77 kB
demux_NNNNGAATANNN_tmp.bam
123.15 kB
demux_NNNNGAATANNN_tmp.bam.bai
1.05 MB
demux_NNNNGAATANNN_tmp_SJ.out.tab
110 B
demux_NNNNGAATANNN_tmp_unmapped.out.mate1.fastq.gz
130.77 kB
demux_NNNNGAATANNN_tmp_stats.txt
1.77 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGAATANNN_tmp.fastq.gz
143.52 kB
demux_NNNNGAATANNN_tmp_fastqc.zip
609.39 kB
stderr.txt
473 B
fastqc
Directory
demux_NNNNGAATANNN_tmp.fastq.gz
143.52 kB
demux_NNNNGAATANNN_tmp_fastqc.zip
609.39 kB
stderr.txt
473 B
iCount summary
demux_NNNNTTTAANNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNTTTAANNN_unique_summary.tsv_summary_gene.tsv
549.88 kB
demux_NNNNTTTAANNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNTTTAANNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNTTTAANNN_unique_summary.tsv_summary_gene.tsv
549.88 kB
demux_NNNNTTTAANNN_unique_summary.tsv_summary_type.tsv
264 B
iCount xlsites
demux_NNNNTTTAANNN_skipped.bam
780.42 kB
demux_NNNNTTTAANNN_unique.bedgraph
1.08 MB
demux_NNNNTTTAANNN_multi.bed.gz
1.85 MB
demux_NNNNTTTAANNN_unique.bed.gz
289.77 kB
demux_NNNNTTTAANNN_skipped.bam
780.42 kB
demux_NNNNTTTAANNN_unique.bedgraph
1.08 MB
demux_NNNNTTTAANNN_multi.bed.gz
1.85 MB
demux_NNNNTTTAANNN_unique.bed.gz
289.77 kB
STAR
demux_NNNNTTTAANNN.bam.bai
3.38 MB
demux_NNNNTTTAANNN.bam
219.39 MB
demux_NNNNTTTAANNN_stats.txt
1.80 kB
demux_NNNNTTTAANNN_SJ.out.tab
103.32 kB
demux_NNNNTTTAANNN_unmapped.out.mate1.fastq.gz
19.04 MB
demux_NNNNTTTAANNN.bam.bai
3.38 MB
demux_NNNNTTTAANNN.bam
219.39 MB
demux_NNNNTTTAANNN_stats.txt
1.80 kB
demux_NNNNTTTAANNN_SJ.out.tab
103.32 kB
demux_NNNNTTTAANNN_unmapped.out.mate1.fastq.gz
19.04 MB
iCount summary
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_type.tsv
260 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
627 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
307.41 kB
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_type.tsv
260 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
627 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
307.41 kB
iCount xlsites
demux_NNNNGCTTGCTGNNNNN_unique.bed.gz
123.40 kB
demux_NNNNGCTTGCTGNNNNN_skipped.bam
431.43 kB
demux_NNNNGCTTGCTGNNNNN_multi.bed.gz
1.08 MB
demux_NNNNGCTTGCTGNNNNN_unique.bedgraph
441.64 kB
demux_NNNNGCTTGCTGNNNNN_unique.bed.gz
123.40 kB
demux_NNNNGCTTGCTGNNNNN_skipped.bam
431.43 kB
demux_NNNNGCTTGCTGNNNNN_multi.bed.gz
1.08 MB
demux_NNNNGCTTGCTGNNNNN_unique.bedgraph
441.64 kB
STAR
demux_NNNNGCTTGCTGNNNNN_unmapped.out.mate1.fastq.gz
5.73 MB
demux_NNNNGCTTGCTGNNNNN.bam.bai
2.62 MB
demux_NNNNGCTTGCTGNNNNN_SJ.out.tab
48.32 kB
demux_NNNNGCTTGCTGNNNNN.bam
106.79 MB
demux_NNNNGCTTGCTGNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGCTGNNNNN_unmapped.out.mate1.fastq.gz
5.73 MB
demux_NNNNGCTTGCTGNNNNN.bam.bai
2.62 MB
demux_NNNNGCTTGCTGNNNNN_SJ.out.tab
48.32 kB
demux_NNNNGCTTGCTGNNNNN.bam
106.79 MB
demux_NNNNGCTTGCTGNNNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCTGNNNNN.fastq.gz
17.80 MB
demux_NNNNGCTTGCTGNNNNN_fastqc.zip
428.33 kB
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNGCTTGCTGNNNNN.fastq.gz
17.80 MB
demux_NNNNGCTTGCTGNNNNN_fastqc.zip
428.33 kB
stderr.txt
1.05 kB
iCount summary
demux_NNNNGCTTGTTANNNNN_unique_summary.tsv_summary_gene.tsv
322.59 kB
demux_NNNNGCTTGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTTGTTANNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGTTANNNNN_unique_summary.tsv_summary_gene.tsv
322.59 kB
demux_NNNNGCTTGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTTGTTANNNNN_unique_summary.tsv_summary_type.tsv
262 B
iCount xlsites
demux_NNNNGCTTGTTANNNNN_unique.bedgraph
476.01 kB
demux_NNNNGCTTGTTANNNNN_unique.bed.gz
132.66 kB
demux_NNNNGCTTGTTANNNNN_multi.bed.gz
1.11 MB
demux_NNNNGCTTGTTANNNNN_skipped.bam
523.21 kB
demux_NNNNGCTTGTTANNNNN_unique.bedgraph
476.01 kB
demux_NNNNGCTTGTTANNNNN_unique.bed.gz
132.66 kB
demux_NNNNGCTTGTTANNNNN_multi.bed.gz
1.11 MB
demux_NNNNGCTTGTTANNNNN_skipped.bam
523.21 kB
STAR
demux_NNNNGCTTGTTANNNNN_unmapped.out.mate1.fastq.gz
19.98 MB
demux_NNNNGCTTGTTANNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGTTANNNNN.bam
142.39 MB
demux_NNNNGCTTGTTANNNNN_SJ.out.tab
48.59 kB
demux_NNNNGCTTGTTANNNNN.bam.bai
2.67 MB
demux_NNNNGCTTGTTANNNNN_unmapped.out.mate1.fastq.gz
19.98 MB
demux_NNNNGCTTGTTANNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGTTANNNNN.bam
142.39 MB
demux_NNNNGCTTGTTANNNNN_SJ.out.tab
48.59 kB
demux_NNNNGCTTGTTANNNNN.bam.bai
2.67 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGTTANNNNN.fastq.gz
34.05 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGTTANNNNN_fastqc.zip
396.18 kB
fastqc
Directory
demux_NNNNGCTTGTTANNNNN.fastq.gz
34.05 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGTTANNNNN_fastqc.zip
396.18 kB
iCount summary
demux_NNNNGCTTGTGCNNNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNGCTTGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
320.00 kB
demux_NNNNGCTTGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
628 B
demux_NNNNGCTTGTGCNNNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNGCTTGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
320.00 kB
demux_NNNNGCTTGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
628 B
iCount xlsites
demux_NNNNGCTTGTGCNNNNN_skipped.bam
471.63 kB
demux_NNNNGCTTGTGCNNNNN_unique.bedgraph
459.79 kB
demux_NNNNGCTTGTGCNNNNN_unique.bed.gz
127.98 kB
demux_NNNNGCTTGTGCNNNNN_multi.bed.gz
1.08 MB
demux_NNNNGCTTGTGCNNNNN_skipped.bam
471.63 kB
demux_NNNNGCTTGTGCNNNNN_unique.bedgraph
459.79 kB
demux_NNNNGCTTGTGCNNNNN_unique.bed.gz
127.98 kB
demux_NNNNGCTTGTGCNNNNN_multi.bed.gz
1.08 MB
STAR
demux_NNNNGCTTGTGCNNNNN_unmapped.out.mate1.fastq.gz
6.76 MB
demux_NNNNGCTTGTGCNNNNN.bam.bai
2.62 MB
demux_NNNNGCTTGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGTGCNNNNN.bam
126.27 MB
demux_NNNNGCTTGTGCNNNNN_SJ.out.tab
45.87 kB
demux_NNNNGCTTGTGCNNNNN_unmapped.out.mate1.fastq.gz
6.76 MB
demux_NNNNGCTTGTGCNNNNN.bam.bai
2.62 MB
demux_NNNNGCTTGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGTGCNNNNN.bam
126.27 MB
demux_NNNNGCTTGTGCNNNNN_SJ.out.tab
45.87 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNGCTTGTGCNNNNN_fastqc.zip
412.01 kB
demux_NNNNGCTTGTGCNNNNN.fastq.gz
20.98 MB
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNGCTTGTGCNNNNN_fastqc.zip
412.01 kB
demux_NNNNGCTTGTGCNNNNN.fastq.gz
20.98 MB
iCount xlsites
demux_NNNNATACGNNN_unique.bed.gz
50.16 kB
demux_NNNNATACGNNN_skipped.bam
276.63 kB
demux_NNNNATACGNNN_unique.bedgraph
174.38 kB
demux_NNNNATACGNNN_multi.bed.gz
493.05 kB
demux_NNNNATACGNNN_unique.bed.gz
50.16 kB
demux_NNNNATACGNNN_skipped.bam
276.63 kB
demux_NNNNATACGNNN_unique.bedgraph
174.38 kB
demux_NNNNATACGNNN_multi.bed.gz
493.05 kB
STAR
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
3.92 MB
demux_NNNNATACGNNN.bam
61.97 MB
demux_NNNNATACGNNN_SJ.out.tab
19.86 kB
demux_NNNNATACGNNN.bam.bai
1.92 MB
demux_NNNNATACGNNN_stats.txt
1.80 kB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
3.92 MB
demux_NNNNATACGNNN.bam
61.97 MB
demux_NNNNATACGNNN_SJ.out.tab
19.86 kB
demux_NNNNATACGNNN.bam.bai
1.92 MB
demux_NNNNATACGNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATACGNNN.fastq.gz
11.61 MB
demux_NNNNATACGNNN_fastqc.zip
459.30 kB
stderr.txt
975 B
fastqc
Directory
demux_NNNNATACGNNN.fastq.gz
11.61 MB
demux_NNNNATACGNNN_fastqc.zip
459.30 kB
stderr.txt
975 B
iCount xlsites
demux_NNNNATCTGATTNNNNN_skipped.bam
812.06 kB
demux_NNNNATCTGATTNNNNN_multi.bed.gz
1.56 MB
demux_NNNNATCTGATTNNNNN_unique.bed.gz
207.55 kB
demux_NNNNATCTGATTNNNNN_unique.bedgraph
763.84 kB
demux_NNNNATCTGATTNNNNN_skipped.bam
812.06 kB
demux_NNNNATCTGATTNNNNN_multi.bed.gz
1.56 MB
demux_NNNNATCTGATTNNNNN_unique.bed.gz
207.55 kB
demux_NNNNATCTGATTNNNNN_unique.bedgraph
763.84 kB
STAR
demux_NNNNACCTTNNN_unmapped.out.mate1.fastq.gz
25.79 MB
demux_NNNNACCTTNNN_stats.txt
1.80 kB
demux_NNNNACCTTNNN.bam.bai
3.32 MB
demux_NNNNACCTTNNN_SJ.out.tab
100.16 kB
demux_NNNNACCTTNNN.bam
212.84 MB
demux_NNNNACCTTNNN_unmapped.out.mate1.fastq.gz
25.79 MB
demux_NNNNACCTTNNN_stats.txt
1.80 kB
demux_NNNNACCTTNNN.bam.bai
3.32 MB
demux_NNNNACCTTNNN_SJ.out.tab
100.16 kB
demux_NNNNACCTTNNN.bam
212.84 MB
Reads (single-end)
fastqc
Directory
demux_NNNNACCTTNNN.fastq.gz
44.09 MB
stderr.txt
975 B
demux_NNNNACCTTNNN_fastqc.zip
504.25 kB
fastqc
Directory
demux_NNNNACCTTNNN.fastq.gz
44.09 MB
stderr.txt
975 B
demux_NNNNACCTTNNN_fastqc.zip
504.25 kB
iCount summary
demux_NNNNCCGGANNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_gene.tsv
485.57 kB
demux_NNNNCCGGANNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_gene.tsv
485.57 kB
iCount xlsites
demux_NNNNCCGGANNN_skipped.bam
1.38 MB
demux_NNNNCCGGANNN_multi.bed.gz
1.45 MB
demux_NNNNCCGGANNN_unique.bed.gz
226.33 kB
demux_NNNNCCGGANNN_unique.bedgraph
844.75 kB
demux_NNNNCCGGANNN_skipped.bam
1.38 MB
demux_NNNNCCGGANNN_multi.bed.gz
1.45 MB
demux_NNNNCCGGANNN_unique.bed.gz
226.33 kB
demux_NNNNCCGGANNN_unique.bedgraph
844.75 kB
STAR
demux_NNNNCCGGANNN_unmapped.out.mate1.fastq.gz
42.49 MB
demux_NNNNCCGGANNN.bam.bai
3.04 MB
demux_NNNNCCGGANNN.bam
662.73 MB
demux_NNNNCCGGANNN_stats.txt
1.81 kB
demux_NNNNCCGGANNN_SJ.out.tab
81.53 kB
demux_NNNNCCGGANNN_unmapped.out.mate1.fastq.gz
42.49 MB
demux_NNNNCCGGANNN.bam.bai
3.04 MB
demux_NNNNCCGGANNN.bam
662.73 MB
demux_NNNNCCGGANNN_stats.txt
1.81 kB
demux_NNNNCCGGANNN_SJ.out.tab
81.53 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCCGGANNN.fastq.gz
113.02 MB
stderr.txt
1.00 kB
demux_NNNNCCGGANNN_fastqc.zip
452.96 kB
fastqc
Directory
demux_NNNNCCGGANNN.fastq.gz
113.02 MB
stderr.txt
1.00 kB
demux_NNNNCCGGANNN_fastqc.zip
452.96 kB
iCount summary
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_subtype.tsv
628 B
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_gene.tsv
317.16 kB
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_subtype.tsv
628 B
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_gene.tsv
317.16 kB
iCount xlsites
demux_NNNNGCTTGCGTNNNNN_multi.bed.gz
1.11 MB
demux_NNNNGCTTGCGTNNNNN_unique.bedgraph
465.20 kB
demux_NNNNGCTTGCGTNNNNN_skipped.bam
403.35 kB
demux_NNNNGCTTGCGTNNNNN_unique.bed.gz
129.87 kB
demux_NNNNGCTTGCGTNNNNN_multi.bed.gz
1.11 MB
demux_NNNNGCTTGCGTNNNNN_unique.bedgraph
465.20 kB
demux_NNNNGCTTGCGTNNNNN_skipped.bam
403.35 kB
demux_NNNNGCTTGCGTNNNNN_unique.bed.gz
129.87 kB
STAR
demux_NNNNGCTTGCGTNNNNN_unmapped.out.mate1.fastq.gz
5.94 MB
demux_NNNNGCTTGCGTNNNNN.bam
105.45 MB
demux_NNNNGCTTGCGTNNNNN.bam.bai
2.69 MB
demux_NNNNGCTTGCGTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGCGTNNNNN_SJ.out.tab
45.41 kB
demux_NNNNGCTTGCGTNNNNN_unmapped.out.mate1.fastq.gz
5.94 MB
demux_NNNNGCTTGCGTNNNNN.bam
105.45 MB
demux_NNNNGCTTGCGTNNNNN.bam.bai
2.69 MB
demux_NNNNGCTTGCGTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGCGTNNNNN_SJ.out.tab
45.41 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCGTNNNNN.fastq.gz
17.94 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGCGTNNNNN_fastqc.zip
404.33 kB
fastqc
Directory
demux_NNNNGCTTGCGTNNNNN.fastq.gz
17.94 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGCGTNNNNN_fastqc.zip
404.33 kB
iCount summary
demux_NNNNCATTTNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNCATTTNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNCATTTNNN_unique_summary.tsv_summary_gene.tsv
442.50 kB
demux_NNNNCATTTNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNCATTTNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNCATTTNNN_unique_summary.tsv_summary_gene.tsv
442.50 kB
iCount xlsites
demux_NNNNCATTTNNN_unique.bed.gz
201.52 kB
demux_NNNNCATTTNNN_skipped.bam
427.16 kB
demux_NNNNCATTTNNN_multi.bed.gz
1.38 MB
demux_NNNNCATTTNNN_unique.bedgraph
756.35 kB
demux_NNNNCATTTNNN_unique.bed.gz
201.52 kB
demux_NNNNCATTTNNN_skipped.bam
427.16 kB
demux_NNNNCATTTNNN_multi.bed.gz
1.38 MB
demux_NNNNCATTTNNN_unique.bedgraph
756.35 kB
STAR
demux_NNNNCATTTNNN_unmapped.out.mate1.fastq.gz
13.95 MB
demux_NNNNCATTTNNN.bam.bai
2.92 MB
demux_NNNNCATTTNNN.bam
153.29 MB
demux_NNNNCATTTNNN_stats.txt
1.80 kB
demux_NNNNCATTTNNN_SJ.out.tab
69.02 kB
demux_NNNNCATTTNNN_unmapped.out.mate1.fastq.gz
13.95 MB
demux_NNNNCATTTNNN.bam.bai
2.92 MB
demux_NNNNCATTTNNN.bam
153.29 MB
demux_NNNNCATTTNNN_stats.txt
1.80 kB
demux_NNNNCATTTNNN_SJ.out.tab
69.02 kB
iCount summary
demux_NNNNTCCACNNN_unique_summary.tsv_summary_gene.tsv
371.57 kB
demux_NNNNTCCACNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_gene.tsv
371.57 kB
demux_NNNNTCCACNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_type.tsv
261 B
iCount xlsites
demux_NNNNTCCACNNN_unique.bed.gz
152.19 kB
demux_NNNNTCCACNNN_skipped.bam
745.45 kB
demux_NNNNTCCACNNN_unique.bedgraph
551.29 kB
demux_NNNNTCCACNNN_multi.bed.gz
1.13 MB
demux_NNNNTCCACNNN_unique.bed.gz
152.19 kB
demux_NNNNTCCACNNN_skipped.bam
745.45 kB
demux_NNNNTCCACNNN_unique.bedgraph
551.29 kB
demux_NNNNTCCACNNN_multi.bed.gz
1.13 MB
STAR
demux_NNNNTCCACNNN.bam
385.14 MB
demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz
30.15 MB
demux_NNNNTCCACNNN.bam.bai
2.76 MB
demux_NNNNTCCACNNN_stats.txt
1.80 kB
demux_NNNNTCCACNNN_SJ.out.tab
53.91 kB
demux_NNNNTCCACNNN.bam
385.14 MB
demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz
30.15 MB
demux_NNNNTCCACNNN.bam.bai
2.76 MB
demux_NNNNTCCACNNN_stats.txt
1.80 kB
demux_NNNNTCCACNNN_SJ.out.tab
53.91 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCCACNNN.fastq.gz
71.14 MB
stderr.txt
975 B
demux_NNNNTCCACNNN_fastqc.zip
469.93 kB
fastqc
Directory
demux_NNNNTCCACNNN.fastq.gz
71.14 MB
stderr.txt
975 B
demux_NNNNTCCACNNN_fastqc.zip
469.93 kB
STAR
demux_NNNNAGGCANNN_tmp_unmapped.out.mate1.fastq.gz
82.90 kB
demux_NNNNAGGCANNN_tmp.bam.bai
1.21 MB
demux_NNNNAGGCANNN_tmp.bam
130.96 kB
demux_NNNNAGGCANNN_tmp_stats.txt
1.77 kB
demux_NNNNAGGCANNN_tmp_SJ.out.tab
145 B
demux_NNNNAGGCANNN_tmp_unmapped.out.mate1.fastq.gz
82.90 kB
demux_NNNNAGGCANNN_tmp.bam.bai
1.21 MB
demux_NNNNAGGCANNN_tmp.bam
130.96 kB
demux_NNNNAGGCANNN_tmp_stats.txt
1.77 kB
demux_NNNNAGGCANNN_tmp_SJ.out.tab
145 B
Reads (single-end)
fastqc
Directory
stderr.txt
261 B
demux_NNNNAGGCANNN_tmp.fastq.gz
95.76 kB
demux_NNNNAGGCANNN_tmp_fastqc.zip
541.61 kB
fastqc
Directory
stderr.txt
261 B
demux_NNNNAGGCANNN_tmp.fastq.gz
95.76 kB
demux_NNNNAGGCANNN_tmp_fastqc.zip
541.61 kB
iCount xlsites
demux_NNNNATCTGTTANNNNN_tmp_skipped.bam
9.08 kB
demux_NNNNATCTGTTANNNNN_tmp_multi.bed.gz
912 B
demux_NNNNATCTGTTANNNNN_tmp_unique.bed.gz
199 B
demux_NNNNATCTGTTANNNNN_tmp_skipped.bam
9.08 kB
demux_NNNNATCTGTTANNNNN_tmp_multi.bed.gz
912 B
demux_NNNNATCTGTTANNNNN_tmp_unique.bed.gz
199 B
STAR
demux_NNNNATCTGTTANNNNN_tmp.bam.bai
919.28 kB
demux_NNNNATCTGTTANNNNN_tmp.bam
25.03 kB
demux_NNNNATCTGTTANNNNN_tmp_SJ.out.tab
144 B
demux_NNNNATCTGTTANNNNN_tmp_unmapped.out.mate1.fastq.gz
24.47 kB
demux_NNNNATCTGTTANNNNN_tmp_stats.txt
1.77 kB
demux_NNNNATCTGTTANNNNN_tmp.bam.bai
919.28 kB
demux_NNNNATCTGTTANNNNN_tmp.bam
25.03 kB
demux_NNNNATCTGTTANNNNN_tmp_SJ.out.tab
144 B
demux_NNNNATCTGTTANNNNN_tmp_unmapped.out.mate1.fastq.gz
24.47 kB
demux_NNNNATCTGTTANNNNN_tmp_stats.txt
1.77 kB
Reads (single-end)
demux_NNNNATCTGTTANNNNN_tmp_fastqc.zip
753.64 kB
fastqc
Directory
demux_NNNNATCTGTTANNNNN_tmp.fastq.gz
30.37 kB
stderr.txt
112 B
demux_NNNNATCTGTTANNNNN_tmp_fastqc.zip
753.64 kB
fastqc
Directory
demux_NNNNATCTGTTANNNNN_tmp.fastq.gz
30.37 kB
stderr.txt
112 B
STAR
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
44.48 kB
demux_NNNNATACGNNN.bam
1.55 MB
demux_NNNNATACGNNN_stats.txt
1.78 kB
demux_NNNNATACGNNN_SJ.out.tab
2.61 kB
demux_NNNNATACGNNN.bam.bai
1.62 MB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
44.48 kB
demux_NNNNATACGNNN.bam
1.55 MB
demux_NNNNATACGNNN_stats.txt
1.78 kB
demux_NNNNATACGNNN_SJ.out.tab
2.61 kB
demux_NNNNATACGNNN.bam.bai
1.62 MB
Reads (single-end)
fastqc
Directory
demux_NNNNATACGNNN.fastq.gz
248.95 kB
stderr.txt
534 B
demux_NNNNATACGNNN_fastqc.zip
439.29 kB
fastqc
Directory
demux_NNNNATACGNNN.fastq.gz
248.95 kB
stderr.txt
534 B
demux_NNNNATACGNNN_fastqc.zip
439.29 kB
iCount summary
demux_NNNNAGACTNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNAGACTNNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNAGACTNNN_unique_summary.tsv_summary_gene.tsv
412.50 kB
demux_NNNNAGACTNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNAGACTNNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNAGACTNNN_unique_summary.tsv_summary_gene.tsv
412.50 kB
iCount xlsites
demux_NNNNAGACTNNN_skipped.bam
329.88 kB
demux_NNNNAGACTNNN_unique.bed.gz
175.65 kB
demux_NNNNAGACTNNN_unique.bedgraph
665.38 kB
demux_NNNNAGACTNNN_multi.bed.gz
1.16 MB
demux_NNNNAGACTNNN_skipped.bam
329.88 kB
demux_NNNNAGACTNNN_unique.bed.gz
175.65 kB
demux_NNNNAGACTNNN_unique.bedgraph
665.38 kB
demux_NNNNAGACTNNN_multi.bed.gz
1.16 MB
STAR
demux_NNNNAGACTNNN_stats.txt
1.80 kB
demux_NNNNAGACTNNN.bam.bai
2.56 MB
demux_NNNNAGACTNNN.bam
148.09 MB
demux_NNNNAGACTNNN_SJ.out.tab
68.88 kB
demux_NNNNAGACTNNN_unmapped.out.mate1.fastq.gz
9.60 MB
demux_NNNNAGACTNNN_stats.txt
1.80 kB
demux_NNNNAGACTNNN.bam.bai
2.56 MB
demux_NNNNAGACTNNN.bam
148.09 MB
demux_NNNNAGACTNNN_SJ.out.tab
68.88 kB
demux_NNNNAGACTNNN_unmapped.out.mate1.fastq.gz
9.60 MB
Reads (single-end)
demux_NNNNAGACTNNN.fastq.gz
23.49 MB
fastqc
Directory
demux_NNNNAGACTNNN_fastqc.zip
454.58 kB
stderr.txt
975 B
demux_NNNNAGACTNNN.fastq.gz
23.49 MB
fastqc
Directory
demux_NNNNAGACTNNN_fastqc.zip
454.58 kB
stderr.txt
975 B
iCount xlsites
demux_NNNNATCTGTGCNNNNN_tmp_unique.bed.gz
121 B
demux_NNNNATCTGTGCNNNNN_tmp_multi.bed.gz
167 B
demux_NNNNATCTGTGCNNNNN_tmp_skipped.bam
8.25 kB
demux_NNNNATCTGTGCNNNNN_tmp_unique.bed.gz
121 B
demux_NNNNATCTGTGCNNNNN_tmp_multi.bed.gz
167 B
demux_NNNNATCTGTGCNNNNN_tmp_skipped.bam
8.25 kB
STAR
demux_NNNNATCTGTGCNNNNN_tmp_unmapped.out.mate1.fastq.gz
4.44 kB
demux_NNNNATCTGTGCNNNNN_tmp.bam.bai
275.64 kB
demux_NNNNATCTGTGCNNNNN_tmp.bam
10.09 kB
demux_NNNNATCTGTGCNNNNN_tmp_SJ.out.tab
0 B
demux_NNNNATCTGTGCNNNNN_tmp_stats.txt
1.77 kB
demux_NNNNATCTGTGCNNNNN_tmp_unmapped.out.mate1.fastq.gz
4.44 kB
demux_NNNNATCTGTGCNNNNN_tmp.bam.bai
275.64 kB
demux_NNNNATCTGTGCNNNNN_tmp.bam
10.09 kB
demux_NNNNATCTGTGCNNNNN_tmp_SJ.out.tab
0 B
demux_NNNNATCTGTGCNNNNN_tmp_stats.txt
1.77 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCTGTGCNNNNN_tmp.fastq.gz
4.73 kB
stderr.txt
54 B
demux_NNNNATCTGTGCNNNNN_tmp_fastqc.zip
834.69 kB
fastqc
Directory
demux_NNNNATCTGTGCNNNNN_tmp.fastq.gz
4.73 kB
stderr.txt
54 B
demux_NNNNATCTGTGCNNNNN_tmp_fastqc.zip
834.69 kB
STAR
demux_NNNNGTATTNNN_tmp.bam.bai
1.41 MB
demux_NNNNGTATTNNN_tmp_unmapped.out.mate1.fastq.gz
742.75 kB
demux_NNNNGTATTNNN_tmp_stats.txt
1.78 kB
demux_NNNNGTATTNNN_tmp.bam
746.65 kB
demux_NNNNGTATTNNN_tmp_SJ.out.tab
2.22 kB
demux_NNNNGTATTNNN_tmp.bam.bai
1.41 MB
demux_NNNNGTATTNNN_tmp_unmapped.out.mate1.fastq.gz
742.75 kB
demux_NNNNGTATTNNN_tmp_stats.txt
1.78 kB
demux_NNNNGTATTNNN_tmp.bam
746.65 kB
demux_NNNNGTATTNNN_tmp_SJ.out.tab
2.22 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGTATTNNN_tmp_fastqc.zip
563.78 kB
demux_NNNNGTATTNNN_tmp.fastq.gz
866.39 kB
stderr.txt
1.03 kB
fastqc
Directory
demux_NNNNGTATTNNN_tmp_fastqc.zip
563.78 kB
demux_NNNNGTATTNNN_tmp.fastq.gz
866.39 kB
stderr.txt
1.03 kB
iCount summary
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_gene.tsv
616.69 kB
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_gene.tsv
616.69 kB
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_subtype.tsv
638 B
iCount xlsites
demux_NNNNCAAGTNNN_unique.bedgraph
1.36 MB
demux_NNNNCAAGTNNN_skipped.bam
730.92 kB
demux_NNNNCAAGTNNN_unique.bed.gz
358.57 kB
demux_NNNNCAAGTNNN_multi.bed.gz
2.00 MB
demux_NNNNCAAGTNNN_unique.bedgraph
1.36 MB
demux_NNNNCAAGTNNN_skipped.bam
730.92 kB
demux_NNNNCAAGTNNN_unique.bed.gz
358.57 kB
demux_NNNNCAAGTNNN_multi.bed.gz
2.00 MB
STAR
demux_NNNNCAAGTNNN_unmapped.out.mate1.fastq.gz
16.75 MB
demux_NNNNCAAGTNNN.bam.bai
3.41 MB
demux_NNNNCAAGTNNN_SJ.out.tab
136.92 kB
demux_NNNNCAAGTNNN_stats.txt
1.80 kB
demux_NNNNCAAGTNNN.bam
287.13 MB
demux_NNNNCAAGTNNN_unmapped.out.mate1.fastq.gz
16.75 MB
demux_NNNNCAAGTNNN.bam.bai
3.41 MB
demux_NNNNCAAGTNNN_SJ.out.tab
136.92 kB
demux_NNNNCAAGTNNN_stats.txt
1.80 kB
demux_NNNNCAAGTNNN.bam
287.13 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCAAGTNNN.fastq.gz
43.43 MB
stderr.txt
975 B
demux_NNNNCAAGTNNN_fastqc.zip
473.05 kB
fastqc
Directory
demux_NNNNCAAGTNNN.fastq.gz
43.43 MB
stderr.txt
975 B
demux_NNNNCAAGTNNN_fastqc.zip
473.05 kB
iCount summary
demux_NNNNGCTTGAGGNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
625 B
demux_NNNNGCTTGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
338.64 kB
demux_NNNNGCTTGAGGNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
625 B
demux_NNNNGCTTGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
338.64 kB
iCount xlsites
demux_NNNNGCTTGAGGNNNNN_multi.bed.gz
1.15 MB
demux_NNNNGCTTGAGGNNNNN_skipped.bam
495.08 kB
demux_NNNNGCTTGAGGNNNNN_unique.bed.gz
139.12 kB
demux_NNNNGCTTGAGGNNNNN_unique.bedgraph
500.14 kB
demux_NNNNGCTTGAGGNNNNN_multi.bed.gz
1.15 MB
demux_NNNNGCTTGAGGNNNNN_skipped.bam
495.08 kB
demux_NNNNGCTTGAGGNNNNN_unique.bed.gz
139.12 kB
demux_NNNNGCTTGAGGNNNNN_unique.bedgraph
500.14 kB
STAR
demux_NNNNGCTTGAGGNNNNN.bam.bai
2.71 MB
demux_NNNNGCTTGAGGNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGAGGNNNNN_unmapped.out.mate1.fastq.gz
6.82 MB
demux_NNNNGCTTGAGGNNNNN.bam
126.51 MB
demux_NNNNGCTTGAGGNNNNN_SJ.out.tab
50.64 kB
demux_NNNNGCTTGAGGNNNNN.bam.bai
2.71 MB
demux_NNNNGCTTGAGGNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGAGGNNNNN_unmapped.out.mate1.fastq.gz
6.82 MB
demux_NNNNGCTTGAGGNNNNN.bam
126.51 MB
demux_NNNNGCTTGAGGNNNNN_SJ.out.tab
50.64 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGAGGNNNNN.fastq.gz
21.29 MB
demux_NNNNGCTTGAGGNNNNN_fastqc.zip
398.51 kB
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNGCTTGAGGNNNNN.fastq.gz
21.29 MB
demux_NNNNGCTTGAGGNNNNN_fastqc.zip
398.51 kB
stderr.txt
1.05 kB
iCount summary
demux_NNNNATCTGAGGNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNATCTGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNATCTGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
425.19 kB
demux_NNNNATCTGAGGNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNATCTGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNATCTGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
425.19 kB
iCount xlsites
demux_NNNNATCTGAGGNNNNN_multi.bed.gz
1.48 MB
demux_NNNNATCTGAGGNNNNN_unique.bedgraph
705.57 kB
demux_NNNNATCTGAGGNNNNN_unique.bed.gz
192.76 kB
demux_NNNNATCTGAGGNNNNN_skipped.bam
646.92 kB
demux_NNNNATCTGAGGNNNNN_multi.bed.gz
1.48 MB
demux_NNNNATCTGAGGNNNNN_unique.bedgraph
705.57 kB
demux_NNNNATCTGAGGNNNNN_unique.bed.gz
192.76 kB
demux_NNNNATCTGAGGNNNNN_skipped.bam
646.92 kB
STAR
demux_NNNNATCTGAGGNNNNN.bam.bai
3.03 MB
demux_NNNNATCTGAGGNNNNN_unmapped.out.mate1.fastq.gz
9.01 MB
demux_NNNNATCTGAGGNNNNN.bam
179.75 MB
demux_NNNNATCTGAGGNNNNN_SJ.out.tab
71.96 kB
demux_NNNNATCTGAGGNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGAGGNNNNN.bam.bai
3.03 MB
demux_NNNNATCTGAGGNNNNN_unmapped.out.mate1.fastq.gz
9.01 MB
demux_NNNNATCTGAGGNNNNN.bam
179.75 MB
demux_NNNNATCTGAGGNNNNN_SJ.out.tab
71.96 kB
demux_NNNNATCTGAGGNNNNN_stats.txt
1.80 kB
Reads (single-end)
demux_NNNNATCTGAGGNNNNN.fastq.gz
29.17 MB
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATCTGAGGNNNNN_fastqc.zip
401.29 kB
demux_NNNNATCTGAGGNNNNN.fastq.gz
29.17 MB
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATCTGAGGNNNNN_fastqc.zip
401.29 kB
iCount summary
demux_NNNNGCTCTNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTCTNNN_unique_summary.tsv_summary_gene.tsv
490.42 kB
demux_NNNNGCTCTNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNGCTCTNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTCTNNN_unique_summary.tsv_summary_gene.tsv
490.42 kB
demux_NNNNGCTCTNNN_unique_summary.tsv_summary_type.tsv
261 B
iCount xlsites
demux_NNNNGCTCTNNN_skipped.bam
477.77 kB
demux_NNNNGCTCTNNN_unique.bed.gz
238.04 kB
demux_NNNNGCTCTNNN_unique.bedgraph
905.37 kB
demux_NNNNGCTCTNNN_multi.bed.gz
1.48 MB
demux_NNNNGCTCTNNN_skipped.bam
477.77 kB
demux_NNNNGCTCTNNN_unique.bed.gz
238.04 kB
demux_NNNNGCTCTNNN_unique.bedgraph
905.37 kB
demux_NNNNGCTCTNNN_multi.bed.gz
1.48 MB
STAR
demux_NNNNGCTCTNNN.bam.bai
3.03 MB
demux_NNNNGCTCTNNN_stats.txt
1.80 kB
demux_NNNNGCTCTNNN_unmapped.out.mate1.fastq.gz
10.99 MB
demux_NNNNGCTCTNNN_SJ.out.tab
89.62 kB
demux_NNNNGCTCTNNN.bam
177.48 MB
demux_NNNNGCTCTNNN.bam.bai
3.03 MB
demux_NNNNGCTCTNNN_stats.txt
1.80 kB
demux_NNNNGCTCTNNN_unmapped.out.mate1.fastq.gz
10.99 MB
demux_NNNNGCTCTNNN_SJ.out.tab
89.62 kB
demux_NNNNGCTCTNNN.bam
177.48 MB
Reads (single-end)
demux_NNNNGCTCTNNN.fastq.gz
27.68 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNGCTCTNNN_fastqc.zip
478.56 kB
demux_NNNNGCTCTNNN.fastq.gz
27.68 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNGCTCTNNN_fastqc.zip
478.56 kB
iCount summary
demux_NNNNTGCGTNNN_unique_summary.tsv_summary_gene.tsv
566.50 kB
demux_NNNNTGCGTNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNTGCGTNNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNTGCGTNNN_unique_summary.tsv_summary_gene.tsv
566.50 kB
demux_NNNNTGCGTNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNTGCGTNNN_unique_summary.tsv_summary_subtype.tsv
635 B
iCount xlsites
demux_NNNNTGCGTNNN_multi.bed.gz
1.92 MB
demux_NNNNTGCGTNNN_skipped.bam
555.67 kB
demux_NNNNTGCGTNNN_unique.bed.gz
310.24 kB
demux_NNNNTGCGTNNN_unique.bedgraph
1.16 MB
demux_NNNNTGCGTNNN_multi.bed.gz
1.92 MB
demux_NNNNTGCGTNNN_skipped.bam
555.67 kB
demux_NNNNTGCGTNNN_unique.bed.gz
310.24 kB
demux_NNNNTGCGTNNN_unique.bedgraph
1.16 MB
STAR
demux_NNNNTGCGTNNN.bam.bai
3.42 MB
demux_NNNNTGCGTNNN_unmapped.out.mate1.fastq.gz
24.27 MB
demux_NNNNTGCGTNNN_SJ.out.tab
114.50 kB
demux_NNNNTGCGTNNN.bam
229.59 MB
demux_NNNNTGCGTNNN_stats.txt
1.80 kB
demux_NNNNTGCGTNNN.bam.bai
3.42 MB
demux_NNNNTGCGTNNN_unmapped.out.mate1.fastq.gz
24.27 MB
demux_NNNNTGCGTNNN_SJ.out.tab
114.50 kB
demux_NNNNTGCGTNNN.bam
229.59 MB
demux_NNNNTGCGTNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGCGTNNN.fastq.gz
44.28 MB
stderr.txt
975 B
demux_NNNNTGCGTNNN_fastqc.zip
497.73 kB
fastqc
Directory
demux_NNNNTGCGTNNN.fastq.gz
44.28 MB
stderr.txt
975 B
demux_NNNNTGCGTNNN_fastqc.zip
497.73 kB
iCount summary
demux_NNNNAGGCANNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_gene.tsv
453.03 kB
demux_NNNNAGGCANNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_gene.tsv
453.03 kB
iCount xlsites
demux_NNNNAGGCANNN_skipped.bam
1.31 MB
demux_NNNNAGGCANNN_unique.bed.gz
205.56 kB
demux_NNNNAGGCANNN_multi.bed.gz
1.36 MB
demux_NNNNAGGCANNN_unique.bedgraph
764.73 kB
demux_NNNNAGGCANNN_skipped.bam
1.31 MB
demux_NNNNAGGCANNN_unique.bed.gz
205.56 kB
demux_NNNNAGGCANNN_multi.bed.gz
1.36 MB
demux_NNNNAGGCANNN_unique.bedgraph
764.73 kB
STAR
demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz
41.80 MB
demux_NNNNAGGCANNN_stats.txt
1.81 kB
demux_NNNNAGGCANNN.bam.bai
2.92 MB
demux_NNNNAGGCANNN_SJ.out.tab
72.41 kB
demux_NNNNAGGCANNN.bam
604.26 MB
demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz
41.80 MB
demux_NNNNAGGCANNN_stats.txt
1.81 kB
demux_NNNNAGGCANNN.bam.bai
2.92 MB
demux_NNNNAGGCANNN_SJ.out.tab
72.41 kB
demux_NNNNAGGCANNN.bam
604.26 MB
Reads (single-end)
fastqc
Directory
demux_NNNNAGGCANNN.fastq.gz
106.78 MB
stderr.txt
975 B
demux_NNNNAGGCANNN_fastqc.zip
478.65 kB
fastqc
Directory
demux_NNNNAGGCANNN.fastq.gz
106.78 MB
stderr.txt
975 B
demux_NNNNAGGCANNN_fastqc.zip
478.65 kB
iCount summary
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
366.63 kB
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_type.tsv
260 B
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
366.63 kB
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_type.tsv
260 B
iCount xlsites
demux_NNNNATCTGTGCNNNNN_unique.bed.gz
152.24 kB
demux_NNNNATCTGTGCNNNNN_multi.bed.gz
1.19 MB
demux_NNNNATCTGTGCNNNNN_unique.bedgraph
555.38 kB
demux_NNNNATCTGTGCNNNNN_skipped.bam
572.14 kB
demux_NNNNATCTGTGCNNNNN_unique.bed.gz
152.24 kB
demux_NNNNATCTGTGCNNNNN_multi.bed.gz
1.19 MB
demux_NNNNATCTGTGCNNNNN_unique.bedgraph
555.38 kB
demux_NNNNATCTGTGCNNNNN_skipped.bam
572.14 kB
STAR
demux_NNNNATCTGTGCNNNNN.bam
147.01 MB
demux_NNNNATCTGTGCNNNNN.bam.bai
2.72 MB
demux_NNNNATCTGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGTGCNNNNN_SJ.out.tab
58.98 kB
demux_NNNNATCTGTGCNNNNN_unmapped.out.mate1.fastq.gz
7.50 MB
demux_NNNNATCTGTGCNNNNN.bam
147.01 MB
demux_NNNNATCTGTGCNNNNN.bam.bai
2.72 MB
demux_NNNNATCTGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGTGCNNNNN_SJ.out.tab
58.98 kB
demux_NNNNATCTGTGCNNNNN_unmapped.out.mate1.fastq.gz
7.50 MB
Reads (single-end)
fastqc
Directory
demux_NNNNATCTGTGCNNNNN.fastq.gz
24.07 MB
stderr.txt
1.05 kB
demux_NNNNATCTGTGCNNNNN_fastqc.zip
400.59 kB
fastqc
Directory
demux_NNNNATCTGTGCNNNNN.fastq.gz
24.07 MB
stderr.txt
1.05 kB
demux_NNNNATCTGTGCNNNNN_fastqc.zip
400.59 kB
iCount summary
demux_NNNNGAATANNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_gene.tsv
659.50 kB
demux_NNNNGAATANNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_gene.tsv
659.50 kB
demux_NNNNGAATANNN_unique_summary.tsv_summary_type.tsv
265 B
iCount xlsites
demux_NNNNGAATANNN_skipped.bam
1.54 MB
demux_NNNNGAATANNN_unique.bed.gz
410.49 kB
demux_NNNNGAATANNN_multi.bed.gz
2.36 MB
demux_NNNNGAATANNN_unique.bedgraph
1.56 MB
demux_NNNNGAATANNN_skipped.bam
1.54 MB
demux_NNNNGAATANNN_unique.bed.gz
410.49 kB
demux_NNNNGAATANNN_multi.bed.gz
2.36 MB
demux_NNNNGAATANNN_unique.bedgraph
1.56 MB
STAR
demux_NNNNGAATANNN.bam
363.08 MB
demux_NNNNGAATANNN_unmapped.out.mate1.fastq.gz
32.04 MB
demux_NNNNGAATANNN.bam.bai
3.71 MB
demux_NNNNGAATANNN_stats.txt
1.80 kB
demux_NNNNGAATANNN_SJ.out.tab
146.29 kB
demux_NNNNGAATANNN.bam
363.08 MB
demux_NNNNGAATANNN_unmapped.out.mate1.fastq.gz
32.04 MB
demux_NNNNGAATANNN.bam.bai
3.71 MB
demux_NNNNGAATANNN_stats.txt
1.80 kB
demux_NNNNGAATANNN_SJ.out.tab
146.29 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGAATANNN_fastqc.zip
496.43 kB
demux_NNNNGAATANNN.fastq.gz
64.18 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNGAATANNN_fastqc.zip
496.43 kB
demux_NNNNGAATANNN.fastq.gz
64.18 MB
iCount summary
demux_NNNNGTATTNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNGTATTNNN_unique_summary.tsv_summary_gene.tsv
655.96 kB
demux_NNNNGTATTNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNGTATTNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNGTATTNNN_unique_summary.tsv_summary_gene.tsv
655.96 kB
demux_NNNNGTATTNNN_unique_summary.tsv_summary_subtype.tsv
636 B
iCount xlsites
demux_NNNNGTATTNNN_unique.bedgraph
1.50 MB
demux_NNNNGTATTNNN_skipped.bam
685.04 kB
demux_NNNNGTATTNNN_unique.bed.gz
396.75 kB
demux_NNNNGTATTNNN_multi.bed.gz
2.37 MB
demux_NNNNGTATTNNN_unique.bedgraph
1.50 MB
demux_NNNNGTATTNNN_skipped.bam
685.04 kB
demux_NNNNGTATTNNN_unique.bed.gz
396.75 kB
demux_NNNNGTATTNNN_multi.bed.gz
2.37 MB
STAR
demux_NNNNGTATTNNN_unmapped.out.mate1.fastq.gz
46.63 MB
demux_NNNNGTATTNNN.bam.bai
3.76 MB
demux_NNNNGTATTNNN_stats.txt
1.80 kB
demux_NNNNGTATTNNN_SJ.out.tab
139.64 kB
demux_NNNNGTATTNNN.bam
311.11 MB
demux_NNNNGTATTNNN_unmapped.out.mate1.fastq.gz
46.63 MB
demux_NNNNGTATTNNN.bam.bai
3.76 MB
demux_NNNNGTATTNNN_stats.txt
1.80 kB
demux_NNNNGTATTNNN_SJ.out.tab
139.64 kB
demux_NNNNGTATTNNN.bam
311.11 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGTATTNNN.fastq.gz
71.46 MB
demux_NNNNGTATTNNN_fastqc.zip
535.67 kB
stderr.txt
975 B
fastqc
Directory
demux_NNNNGTATTNNN.fastq.gz
71.46 MB
demux_NNNNGTATTNNN_fastqc.zip
535.67 kB
stderr.txt
975 B
iCount summary
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
390.73 kB
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
390.73 kB
iCount xlsites
demux_NNNNGCTTGATTNNNNN_skipped.bam
673.14 kB
demux_NNNNGCTTGATTNNNNN_multi.bed.gz
1.35 MB
demux_NNNNGCTTGATTNNNNN_unique.bedgraph
614.81 kB
demux_NNNNGCTTGATTNNNNN_unique.bed.gz
168.98 kB
demux_NNNNGCTTGATTNNNNN_skipped.bam
673.14 kB
demux_NNNNGCTTGATTNNNNN_multi.bed.gz
1.35 MB
demux_NNNNGCTTGATTNNNNN_unique.bedgraph
614.81 kB
demux_NNNNGCTTGATTNNNNN_unique.bed.gz
168.98 kB
STAR
demux_NNNNGCTTGATTNNNNN_unmapped.out.mate1.fastq.gz
18.36 MB
demux_NNNNGCTTGATTNNNNN.bam.bai
2.91 MB
demux_NNNNGCTTGATTNNNNN.bam
186.28 MB
demux_NNNNGCTTGATTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGATTNNNNN_SJ.out.tab
65.83 kB
demux_NNNNGCTTGATTNNNNN_unmapped.out.mate1.fastq.gz
18.36 MB
demux_NNNNGCTTGATTNNNNN.bam.bai
2.91 MB
demux_NNNNGCTTGATTNNNNN.bam
186.28 MB
demux_NNNNGCTTGATTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGATTNNNNN_SJ.out.tab
65.83 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGATTNNNNN.fastq.gz
37.65 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGATTNNNNN_fastqc.zip
401.13 kB
fastqc
Directory
demux_NNNNGCTTGATTNNNNN.fastq.gz
37.65 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGATTNNNNN_fastqc.zip
401.13 kB
iCount summary
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_gene.tsv
366.58 kB
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_gene.tsv
366.58 kB
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_type.tsv
261 B
iCount xlsites
demux_NNNNATCTGTTANNNNN_skipped.bam
555.07 kB
demux_NNNNATCTGTTANNNNN_unique.bed.gz
152.79 kB
demux_NNNNATCTGTTANNNNN_unique.bedgraph
553.79 kB
demux_NNNNATCTGTTANNNNN_multi.bed.gz
1.24 MB
demux_NNNNATCTGTTANNNNN_skipped.bam
555.07 kB
demux_NNNNATCTGTTANNNNN_unique.bed.gz
152.79 kB
demux_NNNNATCTGTTANNNNN_unique.bedgraph
553.79 kB
demux_NNNNATCTGTTANNNNN_multi.bed.gz
1.24 MB
STAR
demux_NNNNATCTGTTANNNNN_unmapped.out.mate1.fastq.gz
19.28 MB
demux_NNNNATCTGTTANNNNN.bam
162.52 MB
demux_NNNNATCTGTTANNNNN.bam.bai
2.80 MB
demux_NNNNATCTGTTANNNNN_SJ.out.tab
60.30 kB
demux_NNNNATCTGTTANNNNN_stats.txt
1.80 kB
demux_NNNNATCTGTTANNNNN_unmapped.out.mate1.fastq.gz
19.28 MB
demux_NNNNATCTGTTANNNNN.bam
162.52 MB
demux_NNNNATCTGTTANNNNN.bam.bai
2.80 MB
demux_NNNNATCTGTTANNNNN_SJ.out.tab
60.30 kB
demux_NNNNATCTGTTANNNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCTGTTANNNNN.fastq.gz
35.66 MB
stderr.txt
1.05 kB
demux_NNNNATCTGTTANNNNN_fastqc.zip
384.24 kB
fastqc
Directory
demux_NNNNATCTGTTANNNNN.fastq.gz
35.66 MB
stderr.txt
1.05 kB
demux_NNNNATCTGTTANNNNN_fastqc.zip
384.24 kB
iCount summary
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
309 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
395 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
1.18 kB
STAR
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.26 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
266.71 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
527.76 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.77 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
256 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.18 kB
iCount summary
demux_NNNNACCTTNNN_unique_summary.tsv_summary_gene.tsv
535.88 kB
demux_NNNNACCTTNNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNACCTTNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNACCTTNNN_unique_summary.tsv_summary_gene.tsv
535.88 kB
demux_NNNNACCTTNNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNACCTTNNN_unique_summary.tsv_summary_type.tsv
265 B
iCount peaks
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
90 B
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
173.04 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
209 B
iCount peaks
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
88 B
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
159.30 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
207 B
iCount peaks
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
89 B
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
248.30 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
208 B
iCount peaks
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
89 B
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
153.16 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
208 B
STAR
demux_NNNNGTATTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTATTNNN_trimmed_unmapped.out.mate1.fastq.gz
28.78 MB
demux_NNNNGTATTNNN_trimmed.bam.bai
3.99 MB
demux_NNNNGTATTNNN_trimmed.bam
238.14 MB
demux_NNNNGTATTNNN_trimmed_SJ.out.tab
161.49 kB
iCount peaks
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
101 B
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
180.46 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
219 B
iCount peaks
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
104 B
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
158.27 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
219 B
iCount peaks
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
100 B
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
213.49 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
219 B
iCount peaks
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
93 B
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
236.18 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
212 B
iCount peaks
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
182 B
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_scores.tsv.gz
1.63 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_peaks.bedgraph
342 B
iCount peaks
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
92 B
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
222.55 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
211 B
iCount peaks
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
182 B
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_scores.tsv.gz
1.42 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_peaks.bedgraph
387 B
iCount peaks
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
91 B
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
225.28 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
210 B
iCount peaks
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
92 B
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
120.56 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
211 B
iCount peaks
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
103 B
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
188.94 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
219 B
iCount peaks
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
96 B
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_scores.tsv.gz
24.32 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_peaks.bedgraph
219 B
iCount peaks
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
89 B
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_scores.tsv.gz
19.30 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_peaks.bedgraph
210 B
iCount peaks
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
90 B
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_scores.tsv.gz
16.19 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_peaks.bedgraph
211 B
iCount peaks
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
175 B
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_scores.tsv.gz
1.22 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_peaks.bedgraph
345 B
iCount peaks
demux_NNNNTGCGTNNN_trimmed_single_peaks.bed.gz
154 B
demux_NNNNTGCGTNNN_trimmed_single_scores.tsv.gz
234.39 kB
demux_NNNNTGCGTNNN_trimmed_single_peaks.bedgraph
413 B
iCount peaks
demux_NNNNTTTAANNN_trimmed_single_peaks.bed.gz
69 B
demux_NNNNTTTAANNN_trimmed_single_scores.tsv.gz
221.81 kB
demux_NNNNTTTAANNN_trimmed_single_peaks.bedgraph
198 B
iCount peaks
demux_NNNNGTATTNNN_trimmed_single_peaks.bed.gz
134 B
demux_NNNNGTATTNNN_trimmed_single_scores.tsv.gz
307.41 kB
demux_NNNNGTATTNNN_trimmed_single_peaks.bedgraph
299 B
iCount peaks
demux_NNNNCATTTNNN_trimmed_single_peaks.bed.gz
69 B
demux_NNNNCATTTNNN_trimmed_single_scores.tsv.gz
152.71 kB
demux_NNNNCATTTNNN_trimmed_single_peaks.bedgraph
210 B
iCount peaks
demux_NNNNACCTTNNN_trimmed_single_peaks.bed.gz
115 B
demux_NNNNACCTTNNN_trimmed_single_scores.tsv.gz
206.82 kB
demux_NNNNACCTTNNN_trimmed_single_peaks.bedgraph
235 B
iCount peaks
demux_NNNNGAATANNN_trimmed_single_peaks.bed.gz
155 B
demux_NNNNGAATANNN_trimmed_single_scores.tsv.gz
306.33 kB
demux_NNNNGAATANNN_trimmed_single_peaks.bedgraph
338 B
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-4hr-20180106-ju.fastq.gz
135.66 MB
stderr.txt
1.21 kB
m6a-786o-noq-4hr-20180106-ju_fastqc.zip
439.19 kB
iCount summary
demux_NNNNGAATANNN_mapped_to_genome_single_summary_type.tsv
603 B
demux_NNNNGAATANNN_mapped_to_genome_single_summary_subtype.tsv
986 B
demux_NNNNGAATANNN_mapped_to_genome_single_summary_gene.tsv
1.47 MB
iCount summary
demux_NNNNCATTTNNN_mapped_to_genome_single_summary_type.tsv
600 B
demux_NNNNCATTTNNN_mapped_to_genome_single_summary_subtype.tsv
981 B
demux_NNNNCATTTNNN_mapped_to_genome_single_summary_gene.tsv
1.04 MB
iCount summary
demux_NNNNTGCGTNNN_mapped_to_genome_single_summary_type.tsv
608 B
demux_NNNNTGCGTNNN_mapped_to_genome_single_summary_subtype.tsv
989 B
demux_NNNNTGCGTNNN_mapped_to_genome_single_summary_gene.tsv
1.29 MB
iCount RNA-maps
demux_NNNNTGCGTNNN_mapped_to_genome_single.tar.gz
500.34 kB
Paraclu
demux_NNNNGTATTNNN_mapped_to_genome_single_peaks.bed.gz
7.57 kB
iCount RNA-maps
demux_NNNNGTATTNNN_mapped_to_genome_single.tar.gz
521.86 kB
iCount RNA-maps
demux_NNNNGAATANNN_mapped_to_genome_single.tar.gz
541.27 kB
iCount RNA-maps
demux_NNNNCATTTNNN_mapped_to_genome_single.tar.gz
460.79 kB
Paraclu
demux_NNNNCATTTNNN_mapped_to_genome_single_peaks.bed.gz
3.83 kB
Paraclu
demux_NNNNTGCGTNNN_mapped_to_genome_single_peaks.bed.gz
5.74 kB
PEKA
4mer analysis of demux_NNNNTGCGTNNN_mapped_to_genome.tar.gz
300.29 kB
PEKA
4mer analysis of demux_NNNNGAATANNN_mapped_to_genome.tar.gz
322.09 kB
PEKA
4mer analysis of demux_NNNNGTATTNNN_mapped_to_genome.tar.gz
323.08 kB
iCount RNA-maps
demux_NNNNTTTAANNN_mapped_to_genome_single.tar.gz
496.42 kB
PEKA
4mer analysis of demux_NNNNCATTTNNN_mapped_to_genome.tar.gz
172.07 kB
PEKA
4mer analysis of demux_NNNNACCTTNNN_trimmed_mapped_to_genome.tar.gz
305.50 kB
Cutadapt (single-end)
report.txt
655 B
demux_NNNNGAATANNN_trimmed.fastq.gz
54.26 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
655 B
demux_NNNNCATTTNNN_trimmed.fastq.gz
23.95 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
655 B
demux_NNNNGTATTNNN_trimmed.fastq.gz
57.71 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
655 B
demux_NNNNTGCGTNNN_trimmed.fastq.gz
36.73 MB
fastqc
Directory
STAR
demux_NNNNCATTTNNN_trimmed_unmapped.out.mate1.fastq.gz
8.79 MB
demux_NNNNCATTTNNN_trimmed.bam.bai
3.10 MB
demux_NNNNCATTTNNN_trimmed.bam
119.02 MB
demux_NNNNCATTTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCATTTNNN_trimmed_SJ.out.tab
78.39 kB
Cutadapt (single-end)
report.txt
663 B
demux_NNNNACCTTNNN_trimmed_trimmed.fastq.gz
35.84 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
655 B
demux_NNNNTTTAANNN_trimmed.fastq.gz
35.59 MB
fastqc
Directory
iCount RNA-maps
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single.tar.gz
1017.15 kB
STAR
demux_NNNNGAATANNN_trimmed_unmapped.out.mate1.fastq.gz
19.95 MB
demux_NNNNGAATANNN_trimmed.bam.bai
3.91 MB
demux_NNNNGAATANNN_trimmed.bam
275.67 MB
demux_NNNNGAATANNN_trimmed_stats.txt
1.80 kB
demux_NNNNGAATANNN_trimmed_SJ.out.tab
159.46 kB
STAR
demux_NNNNTGCGTNNN_trimmed_unmapped.out.mate1.fastq.gz
14.63 MB
demux_NNNNTGCGTNNN_trimmed.bam.bai
3.62 MB
demux_NNNNTGCGTNNN_trimmed.bam
176.15 MB
demux_NNNNTGCGTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTGCGTNNN_trimmed_SJ.out.tab
127.42 kB
STAR
demux_NNNNACCTTNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
15.19 MB
demux_NNNNACCTTNNN_trimmed_trimmed.bam.bai
3.53 MB
demux_NNNNACCTTNNN_trimmed_trimmed.bam
163.52 MB
demux_NNNNACCTTNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNACCTTNNN_trimmed_trimmed_SJ.out.tab
112.33 kB
STAR
demux_NNNNTTTAANNN_trimmed_unmapped.out.mate1.fastq.gz
12.78 MB
demux_NNNNTTTAANNN_trimmed.bam.bai
3.64 MB
demux_NNNNTTTAANNN_trimmed.bam
175.48 MB
demux_NNNNTTTAANNN_trimmed_stats.txt
1.80 kB
demux_NNNNTTTAANNN_trimmed_SJ.out.tab
118.83 kB
iCount xlsites
demux_NNNNCATTTNNN_mapped_to_genome_skipped.bam
3.06 kB
demux_NNNNCATTTNNN_mapped_to_genome_single.bed.gz
225.90 kB
demux_NNNNCATTTNNN_mapped_to_genome_singleAndMulti.bed.gz
1.56 MB
demux_NNNNCATTTNNN_mapped_to_genome_reads_single.bed.gz
240.84 kB
demux_NNNNCATTTNNN_mapped_to_genome_single.bedgraph
848.35 kB
iCount xlsites
demux_NNNNGTATTNNN_mapped_to_genome_skipped.bam
3.53 kB
demux_NNNNGTATTNNN_mapped_to_genome_single.bed.gz
457.68 kB
demux_NNNNGTATTNNN_mapped_to_genome_singleAndMulti.bed.gz
2.79 MB
demux_NNNNGTATTNNN_mapped_to_genome_reads_single.bed.gz
486.61 kB
demux_NNNNGTATTNNN_mapped_to_genome_single.bedgraph
1.73 MB
iCount xlsites
demux_NNNNTGCGTNNN_mapped_to_genome_skipped.bam
3.06 kB
demux_NNNNTGCGTNNN_mapped_to_genome_single.bed.gz
343.01 kB
demux_NNNNTGCGTNNN_mapped_to_genome_singleAndMulti.bed.gz
2.19 MB
demux_NNNNTGCGTNNN_mapped_to_genome_reads_single.bed.gz
365.39 kB
demux_NNNNTGCGTNNN_mapped_to_genome_single.bedgraph
1.29 MB
iCount xlsites
demux_NNNNGAATANNN_mapped_to_genome_skipped.bam
3.37 kB
demux_NNNNGAATANNN_mapped_to_genome_single.bed.gz
455.76 kB
demux_NNNNGAATANNN_mapped_to_genome_singleAndMulti.bed.gz
2.68 MB
demux_NNNNGAATANNN_mapped_to_genome_reads_single.bed.gz
487.52 kB
demux_NNNNGAATANNN_mapped_to_genome_single.bedgraph
1.73 MB
iCount xlsites
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_skipped.bam
3.06 kB
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single.bed.gz
305.10 kB
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_singleAndMulti.bed.gz
2.05 MB
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_reads_single.bed.gz
325.25 kB
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single.bedgraph
1.13 MB
iCount summary
demux_NNNNGTATTNNN_mapped_to_genome_single_summary_type.tsv
605 B
demux_NNNNGTATTNNN_mapped_to_genome_single_summary_subtype.tsv
993 B
demux_NNNNGTATTNNN_mapped_to_genome_single_summary_gene.tsv
1.49 MB
iCount xlsites
demux_NNNNTTTAANNN_mapped_to_genome_skipped.bam
3.29 kB
demux_NNNNTTTAANNN_mapped_to_genome_single.bed.gz
338.11 kB
demux_NNNNTTTAANNN_mapped_to_genome_singleAndMulti.bed.gz
2.17 MB
demux_NNNNTTTAANNN_mapped_to_genome_reads_single.bed.gz
360.37 kB
demux_NNNNTTTAANNN_mapped_to_genome_single.bedgraph
1.26 MB
iCount summary
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single_summary_type.tsv
602 B
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single_summary_subtype.tsv
987 B
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single_summary_gene.tsv
1.24 MB
Paraclu
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single_peaks.bed.gz
5.42 kB
iCount RNA-maps
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single.tar.gz
479.02 kB
iCount summary
demux_NNNNTTTAANNN_mapped_to_genome_single_summary_type.tsv
602 B
demux_NNNNTTTAANNN_mapped_to_genome_single_summary_subtype.tsv
986 B
demux_NNNNTTTAANNN_mapped_to_genome_single_summary_gene.tsv
1.29 MB
Paraclu
demux_NNNNGAATANNN_mapped_to_genome_single_peaks.bed.gz
7.67 kB
Paraclu
demux_NNNNTTTAANNN_mapped_to_genome_single_peaks.bed.gz
5.68 kB
PEKA
4mer analysis of demux_NNNNTTTAANNN_mapped_to_genome.tar.gz
296.84 kB
STAR
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
21.35 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed.bam
173.88 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_SJ.out.tab
0 B
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed.bw
106.63 kB
Paraclu
peaks.bed.gz
377 B
STAR
m1a-786o-ctrl-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
96.71 MB
m1a-786o-ctrl-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed.bam
792.11 MB
m1a-786o-ctrl-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m1a-786o-ctrl-4h-20180413-ju_trimmed_stats.txt
1.79 kB
STAR
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
67.81 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam
562.25 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_SJ.out.tab
0 B
STAR
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
5.83 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped.bam.bai
3.24 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped.bam
42.43 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_SJ.out.tab
423.97 kB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped.bw
30.36 kB
iCount RNA-maps
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single.tar.gz
360.64 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_single.bedgraph
230 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_reads_single.bed.gz
51.34 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_singleAndMulti.bed.gz
82.67 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_single.bed.gz
43.96 kB
STAR
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped.bam.bai
1.67 MB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
10.62 MB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped.bam
33.18 MB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_SJ.out.tab
11.81 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped.bw
18.44 kB
iCount summary
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
475 B
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
1.13 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
665 B
m62a-786o-noq-4h-20180413-ju_trimmed.fastq.gz
305.93 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
m1a-786o-noq-15min-20180413-ju_trimmed.fastq.gz
348.30 MB
Cutadapt (single-end)
report.txt
674 B
fastqc
Directory
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed.fastq.gz
407.73 MB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-4h-20180413-ju_trimmed.fastq.gz
435.47 MB
report.txt
663 B
iCount summary
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
390.50 kB
iCount RNA-maps
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
412.46 kB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz
379.34 MB
stderr.txt
1.44 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_fastqc.zip
516.21 kB
iCount summary
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
474 B
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
746.49 kB
Paraclu
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.62 kB
iCount summary
demux_NNNNCTGTANNN_unique_summary.tsv_summary_gene.tsv
431.81 kB
demux_NNNNCTGTANNN_unique_summary.tsv_summary_subtype.tsv
645 B
demux_NNNNCTGTANNN_unique_summary.tsv_summary_type.tsv
267 B
iCount RNA-maps
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
478.68 kB
iCount xlsites
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_skipped.bam
3.48 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
309.54 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
372.28 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.18 MB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.18 MB
iCount RNA-maps
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
490.49 kB
K-mers
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.tar.gz
281.08 kB
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
419.80 kB
K-mers
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.tar.gz
215.78 kB
iCount summary
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
474 B
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
897.97 kB
iCount RNA-maps
results.tar.gz
426.46 kB
Paraclu
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.33 kB
iCount RNA-maps
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
569.89 kB
iCount group
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped.bed.gz
329.69 kB
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped.bedgraph
1.25 MB
iCount group
m6A_786O:wtVHL__20180420_JU_1Rep_grouped.bedgraph
9.13 MB
m6A_786O:wtVHL__20180420_JU_1Rep_grouped.bed.gz
2.03 MB
iCount summary
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_subtype.tsv
646 B
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_gene.tsv
602.95 kB
STAR
demux_NNNNGATCGNNN.bam
1.28 GB
demux_NNNNGATCGNNN_unmapped.out.mate1.fastq.gz
52.97 MB
demux_NNNNGATCGNNN.bam.bai
4.40 MB
demux_NNNNGATCGNNN_stats.txt
1.81 kB
demux_NNNNGATCGNNN_SJ.out.tab
194.01 kB
STAR
demux_NNNNCACAGGGANNNNN.bam.bai
3.52 MB
demux_NNNNCACAGGGANNNNN_stats.txt
1.80 kB
demux_NNNNCACAGGGANNNNN_unmapped.out.mate1.fastq.gz
5.19 MB
demux_NNNNCACAGGGANNNNN_SJ.out.tab
135.51 kB
demux_NNNNCACAGGGANNNNN.bam
186.46 MB
iCount group
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped.bed.gz
192.49 kB
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped.bedgraph
731.76 kB
iCount group
m6A_Ctrl_24H_20180106_JU_1Rep_grouped.bed.gz
1.45 MB
m6A_Ctrl_24H_20180106_JU_1Rep_grouped.bedgraph
6.69 MB
iCount group
m6A_NoQ_24H_20180106_JU_1Rep_grouped.bedgraph
9.55 MB
m6A_NoQ_24H_20180106_JU_1Rep_grouped.bed.gz
2.04 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCACAGGGANNNNN.fastq.gz
21.86 MB
demux_NNNNCACAGGGANNNNN_fastqc.zip
390.15 kB
stderr.txt
1.05 kB
iCount clusters
Input_786O_Control-(completeDMEM)_6Reps_grouped_clustered.bedgraph
169.16 kB
Input_786O_Control-(completeDMEM)_6Reps_grouped_clustered.bed.gz
106.02 kB
iCount clusters
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_clustered.bed.gz
21.49 kB
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_clustered.bedgraph
29.57 kB
iCount group
Input_NoQ 24hrs_20180223_JU_1Rep_grouped.bedgraph
1008.60 kB
Input_NoQ 24hrs_20180223_JU_1Rep_grouped.bed.gz
264.55 kB
iCount group
Input_NoQ 15min_20180223_JU_1Rep_grouped.bed.gz
311.91 kB
Input_NoQ 15min_20180223_JU_1Rep_grouped.bedgraph
1.16 MB
iCount clusters
Input_NoQ 15min_20180223_JU_1Rep_grouped_clustered.bed.gz
27.73 kB
Input_NoQ 15min_20180223_JU_1Rep_grouped_clustered.bedgraph
38.78 kB
iCount summary
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_type.tsv
261 B
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_gene.tsv
467.85 kB
STAR
demux_NNNNTCATCNNN.bam.bai
4.67 MB
demux_NNNNTCATCNNN_unmapped.out.mate1.fastq.gz
95.07 MB
demux_NNNNTCATCNNN.bam
2.43 GB
demux_NNNNTCATCNNN_stats.txt
1.81 kB
demux_NNNNTCATCNNN_SJ.out.tab
424.38 kB
STAR
demux_NNNNCACAGTGCNNNNN.bam.bai
3.18 MB
demux_NNNNCACAGTGCNNNNN_unmapped.out.mate1.fastq.gz
3.26 MB
demux_NNNNCACAGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNCACAGTGCNNNNN.bam
107.39 MB
demux_NNNNCACAGTGCNNNNN_SJ.out.tab
91.22 kB
iCount clusters
m6A_NoQ_4hrs_2Reps_grouped_clustered.bedgraph
565.86 kB
m6A_NoQ_4hrs_2Reps_grouped_clustered.bed.gz
248.01 kB
iCount clusters
m1A_786O_Ctrl 4H_2Reps_grouped_clustered.bedgraph
79.74 kB
m1A_786O_Ctrl 4H_2Reps_grouped_clustered.bed.gz
54.32 kB
iCount group
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped.bed.gz
314.38 kB
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped.bedgraph
1.19 MB
iCount clusters
m1A_786O__20180420_JU_1Rep_grouped_clustered.bedgraph
119.73 kB
m1A_786O__20180420_JU_1Rep_grouped_clustered.bed.gz
78.44 kB
iCount group
m1A_NoQ_15min_2Reps_grouped.bedgraph
1.33 MB
m1A_NoQ_15min_2Reps_grouped.bed.gz
352.01 kB
iCount clusters
m6A_Ctrl_4hrs_2Reps_grouped_clustered.bedgraph
310.75 kB
m6A_Ctrl_4hrs_2Reps_grouped_clustered.bed.gz
149.36 kB
iCount group
m6A_Ctrl_4hrs_2Reps_grouped.bedgraph
11.17 MB
m6A_Ctrl_4hrs_2Reps_grouped.bed.gz
2.41 MB
iCount group
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped.bedgraph
1.55 MB
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped.bed.gz
396.82 kB
iCount group
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped.bed.gz
374.03 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped.bedgraph
1.46 MB
Paraclu
peaks.bed.gz
3.36 kB
iCount summary
demux_NNNNCATACNNN_unique_summary.tsv_summary_type.tsv
272 B
demux_NNNNCATACNNN_unique_summary.tsv_summary_gene.tsv
1.15 MB
demux_NNNNCATACNNN_unique_summary.tsv_summary_subtype.tsv
650 B
iCount group
Input_786O_Control-(completeDMEM)_6Reps_grouped.bed.gz
1.29 MB
Input_786O_Control-(completeDMEM)_6Reps_grouped.bedgraph
5.28 MB
iCount summary
demux_NNNNCACAGGGANNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNCACAGGGANNNNN_unique_summary.tsv_summary_gene.tsv
661.84 kB
demux_NNNNCACAGGGANNNNN_unique_summary.tsv_summary_subtype.tsv
640 B
iCount xlsites
demux_NNNNCACAGGGANNNNN_multi.bed.gz
2.33 MB
demux_NNNNCACAGGGANNNNN_skipped.bam
627.21 kB
demux_NNNNCACAGGGANNNNN_unique.bed.gz
399.85 kB
demux_NNNNCACAGGGANNNNN_unique.bedgraph
1.52 MB
iCount summary
m6A_786O__20180420_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
264.02 kB
m6A_786O__20180420_JU_1Rep_grouped_summary.tsv_summary_type.tsv
259 B
m6A_786O__20180420_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
626 B
iCount group
Input_Control 24hrs_20180223_JU_1Rep_grouped.bedgraph
1.46 MB
Input_Control 24hrs_20180223_JU_1Rep_grouped.bed.gz
384.66 kB
iCount clusters
IgG_786O__20180420_JU_IgG_grouped_clustered.bed.gz
15.40 kB
IgG_786O__20180420_JU_IgG_grouped_clustered.bedgraph
21.15 kB
iCount group
m6A_NoQ+DM-Akg_15min_2reps_grouped.bed.gz
452.56 kB
m6A_NoQ+DM-Akg_15min_2reps_grouped.bedgraph
1.78 MB
iCount summary
demux_NNNNTCGAGGTCNNNNN_unique_summary.tsv_summary_gene.tsv
777.24 kB
demux_NNNNTCGAGGTCNNNNN_unique_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNTCGAGGTCNNNNN_unique_summary.tsv_summary_type.tsv
266 B
iCount clusters
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_clustered.bed.gz
38.56 kB
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_clustered.bedgraph
55.55 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGTAACNNN_fastqc.zip
469.47 kB
demux_NNNNGTAACNNN.fastq.gz
415.44 MB
iCount group
Input_NoQ 4hrs_20180223_JU_1Rep_grouped.bed.gz
424.52 kB
Input_NoQ 4hrs_20180223_JU_1Rep_grouped.bedgraph
1.61 MB
iCount summary
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_gene.tsv
604.52 kB
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNTCGAGATTNNNNN_unique_summary.tsv_summary_type.tsv
265 B
STAR
demux_NNNNTCGAGATTNNNNN.bam
151.13 MB
demux_NNNNTCGAGATTNNNNN.bam.bai
3.85 MB
demux_NNNNTCGAGATTNNNNN_SJ.out.tab
102.73 kB
demux_NNNNTCGAGATTNNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGATTNNNNN_unmapped.out.mate1.fastq.gz
16.42 MB
iCount group
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped.bed.gz
286.13 kB
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped.bedgraph
1.08 MB
iCount group
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped.bed.gz
249.09 kB
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped.bedgraph
950.65 kB
iCount xlsites
demux_NNNNCACAGTGCNNNNN_multi.bed.gz
1.78 MB
demux_NNNNCACAGTGCNNNNN_unique.bedgraph
1.03 MB
demux_NNNNCACAGTGCNNNNN_unique.bed.gz
276.18 kB
demux_NNNNCACAGTGCNNNNN_skipped.bam
331.20 kB
iCount peaks
demux_NNNNTCGCCNNN_unique_peaks.bed.gz
162.70 kB
demux_NNNNTCGCCNNN_unique_scores.tsv.gz
1.44 MB
demux_NNNNTCGCCNNN_unique_peaks.bedgraph
431.70 kB
iCount peaks
demux_NNNNGATCGNNN_unique_peaks.bed.gz
101.79 kB
demux_NNNNGATCGNNN_unique_scores.tsv.gz
829.70 kB
demux_NNNNGATCGNNN_unique_peaks.bedgraph
224.65 kB
iCount peaks
demux_NNNNTCGAGNNN_unique_peaks.bed.gz
173.38 kB
demux_NNNNTCGAGNNN_unique_scores.tsv.gz
1.08 MB
demux_NNNNTCGAGNNN_unique_peaks.bedgraph
418.33 kB
iCount peaks
demux_NNNNAGTCCNNN_unique_peaks.bed.gz
167.46 kB
demux_NNNNAGTCCNNN_unique_peaks.bedgraph
450.87 kB
demux_NNNNAGTCCNNN_unique_scores.tsv.gz
1.46 MB
iCount peaks
demux_NNNNGGAGCNNN_unique_scores.tsv.gz
2.13 MB
demux_NNNNGGAGCNNN_unique_peaks.bed.gz
206.82 kB
demux_NNNNGGAGCNNN_unique_peaks.bedgraph
585.74 kB
iCount peaks
demux_NNNNCACAGNNN_unique_scores.tsv.gz
917.34 kB
demux_NNNNCACAGNNN_unique_peaks.bedgraph
359.15 kB
demux_NNNNCACAGNNN_unique_peaks.bed.gz
152.36 kB
iCount peaks
demux_NNNNTCATCNNN_unique_scores.tsv.gz
1.19 MB
demux_NNNNTCATCNNN_unique_peaks.bed.gz
160.60 kB
demux_NNNNTCATCNNN_unique_peaks.bedgraph
395.38 kB
iCount peaks
demux_NNNNGTTTCNNN_unique_peaks.bed.gz
216.42 kB
demux_NNNNGTTTCNNN_unique_peaks.bedgraph
592.92 kB
demux_NNNNGTTTCNNN_unique_scores.tsv.gz
1.91 MB
STAR
demux_NNNNTCGCCNNN.bam.bai
4.74 MB
demux_NNNNTCGCCNNN_unmapped.out.mate1.fastq.gz
78.00 MB
demux_NNNNTCGCCNNN_SJ.out.tab
516.08 kB
demux_NNNNTCGCCNNN_stats.txt
1.81 kB
demux_NNNNTCGCCNNN.bam
1.85 GB
iCount summary
demux_NNNNATACGNNN_unique_summary.tsv_summary_gene.tsv
813.65 kB
demux_NNNNATACGNNN_unique_summary.tsv_summary_subtype.tsv
641 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_type.tsv
267 B
iCount xlsites
demux_NNNNATACGNNN_skipped.bam
4.55 MB
demux_NNNNATACGNNN_multi.bed.gz
2.58 MB
demux_NNNNATACGNNN_unique.bed.gz
659.63 kB
demux_NNNNATACGNNN_unique.bedgraph
2.63 MB
STAR
demux_NNNNATACGNNN.bam
1.81 GB
demux_NNNNATACGNNN_SJ.out.tab
250.56 kB
demux_NNNNATACGNNN_stats.txt
1.81 kB
demux_NNNNATACGNNN.bam.bai
4.17 MB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
71.47 MB
iCount xlsites
demux_NNNNCATACNNN_skipped.bam
9.33 MB
demux_NNNNCATACNNN_unique.bed.gz
2.41 MB
demux_NNNNCATACNNN_unique.bedgraph
10.59 MB
demux_NNNNCATACNNN_multi.bed.gz
7.74 MB
STAR
demux_NNNNCATACNNN.bam
3.31 GB
demux_NNNNCATACNNN_unmapped.out.mate1.fastq.gz
138.47 MB
demux_NNNNCATACNNN.bam.bai
5.19 MB
demux_NNNNCATACNNN_SJ.out.tab
828.77 kB
demux_NNNNCATACNNN_stats.txt
1.82 kB
iCount summary
demux_NNNNGGAGCNNN_unique_summary.tsv_summary_type.tsv
271 B
demux_NNNNGGAGCNNN_unique_summary.tsv_summary_gene.tsv
1.09 MB
demux_NNNNGGAGCNNN_unique_summary.tsv_summary_subtype.tsv
650 B
STAR
demux_NNNNGGAGCNNN.bam.bai
5.03 MB
demux_NNNNGGAGCNNN.bam
2.37 GB
demux_NNNNGGAGCNNN_unmapped.out.mate1.fastq.gz
94.26 MB
demux_NNNNGGAGCNNN_SJ.out.tab
547.34 kB
demux_NNNNGGAGCNNN_stats.txt
1.81 kB
iCount xlsites
demux_NNNNAGTCCNNN_skipped.bam
4.71 MB
demux_NNNNAGTCCNNN_unique.bed.gz
1.48 MB
demux_NNNNAGTCCNNN_multi.bed.gz
4.90 MB
demux_NNNNAGTCCNNN_unique.bedgraph
6.41 MB
iCount summary
demux_NNNNAACTCNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNAACTCNNN_unique_summary.tsv_summary_gene.tsv
877.77 kB
demux_NNNNAACTCNNN_unique_summary.tsv_summary_subtype.tsv
643 B
STAR
demux_NNNNAACTCNNN_unmapped.out.mate1.fastq.gz
55.96 MB
demux_NNNNAACTCNNN.bam.bai
4.15 MB
demux_NNNNAACTCNNN.bam
1.38 GB
demux_NNNNAACTCNNN_stats.txt
1.81 kB
demux_NNNNAACTCNNN_SJ.out.tab
312.62 kB
iCount summary
demux_NNNNCACAGNNN_unique_summary.tsv_summary_subtype.tsv
641 B
demux_NNNNCACAGNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNCACAGNNN_unique_summary.tsv_summary_gene.tsv
917.76 kB
iCount xlsites
demux_NNNNCACAGNNN_unique.bed.gz
833.39 kB
demux_NNNNCACAGNNN_skipped.bam
8.33 MB
demux_NNNNCACAGNNN_unique.bedgraph
3.33 MB
demux_NNNNCACAGNNN_multi.bed.gz
3.30 MB
STAR
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
3.95 MB
demux_NNNNATACGNNN.bam
62.05 MB
demux_NNNNATACGNNN_SJ.out.tab
19.97 kB
demux_NNNNATACGNNN.bam.bai
1.92 MB
demux_NNNNATACGNNN_stats.txt
1.80 kB
iCount xlsites
demux_NNNNCAGGGNNN_unique.bed.gz
400.49 kB
demux_NNNNCAGGGNNN_multi.bed.gz
2.03 MB
demux_NNNNCAGGGNNN_skipped.bam
8.63 MB
demux_NNNNCAGGGNNN_unique.bedgraph
1.50 MB
iCount summary
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_gene.tsv
675.05 kB
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_subtype.tsv
641 B
iCount summary
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_gene.tsv
318.03 kB
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_type.tsv
264 B
Upload iCount sample annotation
UN1711_PG_1-lane17.xlsx
62.03 kB
UN1711_PG_1-lane17.tab.gz
1.23 kB
iCount summary
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_type.tsv
270 B
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_gene.tsv
1.01 MB
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_subtype.tsv
644 B
iCount summary
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_gene.tsv
1.00 MB
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_subtype.tsv
645 B
iCount summary
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_type.tsv
272 B
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_gene.tsv
1.07 MB
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_subtype.tsv
645 B
iCount peaks
demux_NNNNCCTGCNNN_unique_peaks.bedgraph
246.07 kB
demux_NNNNCCTGCNNN_unique_scores.tsv.gz
830.84 kB
demux_NNNNCCTGCNNN_unique_peaks.bed.gz
105.90 kB
iCount xlsites
demux_NNNNGATCGNNN_skipped.bam
3.28 MB
demux_NNNNGATCGNNN_multi.bed.gz
3.05 MB
demux_NNNNGATCGNNN_unique.bed.gz
769.87 kB
demux_NNNNGATCGNNN_unique.bedgraph
3.04 MB
STAR
demux_NNNNTCGAGNNN.bam.bai
5.16 MB
demux_NNNNTCGAGNNN_unmapped.out.mate1.fastq.gz
131.93 MB
demux_NNNNTCGAGNNN_stats.txt
1.81 kB
demux_NNNNTCGAGNNN.bam
3.30 GB
demux_NNNNTCGAGNNN_SJ.out.tab
400.96 kB
iCount summary
demux_NNNNTCATCNNN_unique_summary.tsv_summary_type.tsv
271 B
demux_NNNNTCATCNNN_unique_summary.tsv_summary_gene.tsv
1000.07 kB
demux_NNNNTCATCNNN_unique_summary.tsv_summary_subtype.tsv
647 B
iCount group
m6A_786O_Ctrl_15'_2reps_grouped.bedgraph
1.57 MB
m6A_786O_Ctrl_15'_2reps_grouped.bed.gz
401.71 kB
iCount xlsites
demux_NNNNTCGAGGTCNNNNN_multi.bed.gz
3.27 MB
demux_NNNNTCGAGGTCNNNNN_unique.bed.gz
564.75 kB
demux_NNNNTCGAGGTCNNNNN_unique.bedgraph
2.17 MB
demux_NNNNTCGAGGTCNNNNN_skipped.bam
971.40 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.53 kB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_fastqc.zip
522.92 kB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped.fastq.gz
3.97 MB
iCount clusters
m6A_NoQ+DM-Akg_15min_2reps_grouped_clustered.bed.gz
62.19 kB
m6A_NoQ+DM-Akg_15min_2reps_grouped_clustered.bedgraph
99.38 kB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.38 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
889.15 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.33 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.50 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
449 B
iCount group
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped.bed.gz
277.84 kB
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped.bedgraph
1.05 MB
iCount clusters
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_clustered.bed.gz
19.00 kB
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_clustered.bedgraph
26.09 kB
iCount clusters
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_clustered.bed.gz
41.27 kB
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_clustered.bedgraph
63.20 kB
iCount group
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped.bed.gz
185.01 kB
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped.bedgraph
702.55 kB
iCount clusters
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_clustered.bed.gz
36.52 kB
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_clustered.bedgraph
51.76 kB
iCount clusters
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_clustered.bed.gz
52.11 kB
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_clustered.bedgraph
76.25 kB
iCount clusters
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_clustered.bedgraph
80.49 kB
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_clustered.bed.gz
52.05 kB
iCount reads proxy
fastqc
Directory
m6a_ctrl_24h_20180106_ju-2_unmapped.fastq.gz
6.78 MB
m6a_ctrl_24h_20180106_ju-2_unmapped_fastqc.zip
459.47 kB
stderr.txt
1.34 kB
Upload iCount sample annotation
20180420_JU_iclip_annotation_UN1802_PG_lane20_mySamples_ConsensusMapping.xlsx
17.21 kB
20180420_JU_iclip_annotation_UN1802_PG_lane20_mySamples_ConsensusMapping.tab.gz
1.14 kB
Upload iCount sample annotation
20180420_JU_iclip_annotation_UN1802_PG_lane20_mySamples.xlsx
17.18 kB
20180420_JU_iclip_annotation_UN1802_PG_lane20_mySamples.tab.gz
1.12 kB
Paraclu
peaks.bed.gz
956 B
iCount reads proxy
fastqc
Directory
m1a_786o_noq-4h_20180413_ju_unmapped.fastq.gz
41.97 MB
m1a_786o_noq-4h_20180413_ju_unmapped_fastqc.zip
551.62 kB
stderr.txt
1.36 kB
iCount RNA-maps
results.tar.gz
265.55 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNATACGNNN_trimmed.fastq.gz
67.49 MB
report.txt
685 B
demux_NNNNATACGNNN_trimmed_fastqc.zip
466.55 kB
iCount summary
m1A_786O_NoQ 4H_2Reps_grouped_summary.tsv_summary_type.tsv
261 B
m1A_786O_NoQ 4H_2Reps_grouped_summary.tsv_summary_subtype.tsv
643 B
m1A_786O_NoQ 4H_2Reps_grouped_summary.tsv_summary_gene.tsv
462.19 kB
iCount RNA-maps
results.tar.gz
408.71 kB
FASTQ file (single-end)
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju.fastq.gz
1.20 MB
fastqc
Directory
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_fastqc.zip
556.24 kB
stderr.txt
1.73 kB
iCount xlsites
m1a-786o-20180420-jufastqgz_unmapped_single.bed.gz
583.11 kB
m1a-786o-20180420-jufastqgz_unmapped_skipped.bam
7.15 kB
m1a-786o-20180420-jufastqgz_unmapped_single.bedgraph
2.27 MB
m1a-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
1.67 MB
Reads (single-end)
fastqc
Directory
demux_NNNNATCCANNN.fastq.gz
453.80 MB
demux_NNNNATCCANNN_fastqc.zip
458.97 kB
stderr.txt
975 B
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNCACAGNNN.fastq.gz
94.96 MB
demux_NNNNCACAGNNN_fastqc.zip
417.67 kB
iCount summary
m1a_786o_noq-4h_20180413_ju_unmapped_single_summary_subtype.tsv
1014 B
m1a_786o_noq-4h_20180413_ju_unmapped_single_summary_type.tsv
458 B
m1a_786o_noq-4h_20180413_ju_unmapped_single_summary_gene.tsv
207.04 kB
iCount summary
m1a_786o_noq-15min_20180413_ju_unmapped_single_summary_subtype.tsv
1022 B
m1a_786o_noq-15min_20180413_ju_unmapped_single_summary_type.tsv
462 B
m1a_786o_noq-15min_20180413_ju_unmapped_single_summary_gene.tsv
272.05 kB
Paraclu
peaks.bed.gz
486 B
Reads (single-end)
fastqc
Directory
m6a-786o-ctrl-15-20180106-ju.fastq.gz
31.27 MB
m6a-786o-ctrl-15-20180106-ju_fastqc.zip
490.92 kB
stderr.txt
1.15 kB
iCount xlsites
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_single.bed.gz
164.46 kB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_skipped.bam
3.39 kB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_singleAndMulti.bed.gz
637.23 kB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_single.bedgraph
616.59 kB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_reads_single.bed.gz
175.08 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
363 B
iCount peaks
demux_NNNNCACAGNNN_unique_peaks.bed.gz
29.74 kB
demux_NNNNCACAGNNN_unique_peaks.bedgraph
51.85 kB
demux_NNNNCACAGNNN_unique_scores.tsv.gz
140.75 kB
iCount xlsites
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
10.90 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
67.23 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
32.38 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
9.98 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNAGGCANNN_trimmed.fastq.gz
354.08 MB
demux_NNNNAGGCANNN_trimmed_fastqc.zip
468.47 kB
iCount xlsites
m1a-786o-20180420-jufastqgz_unmapped_skipped.bam
5.59 kB
m1a-786o-20180420-jufastqgz_unmapped_single.bedgraph
585.78 kB
m1a-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
673.49 kB
m1a-786o-20180420-jufastqgz_unmapped_single.bed.gz
161.53 kB
m1a-786o-20180420-jufastqgz_unmapped_reads_single.bed.gz
170.01 kB
iCount group
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped.bed.gz
211.75 kB
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped.bedgraph
795.85 kB
iCount xlsites
m6a_noq_15_20180106_ju-2_unmapped_singleAndMulti.bed.gz
39.81 kB
m6a_noq_15_20180106_ju-2_unmapped_single.bedgraph
15.03 kB
m6a_noq_15_20180106_ju-2_unmapped_skipped.bam
2.93 kB
m6a_noq_15_20180106_ju-2_unmapped_single.bed.gz
4.75 kB
m6a_noq_15_20180106_ju-2_unmapped_reads_single.bed.gz
5.23 kB
iCount summary
m6a_noq_15_20180106_ju-2_unmapped_single_summary_type.tsv
435 B
m6a_noq_15_20180106_ju-2_unmapped_single_summary_gene.tsv
19.80 kB
m6a_noq_15_20180106_ju-2_unmapped_single_summary_subtype.tsv
785 B
iCount summary
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
736 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
445 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
71.13 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
705 B
m6a-786o-20180420-jufastqgz_unmapped_trimmed.fastq.gz
119.24 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
470.09 kB
iCount xlsites
m6a_ctrl_24h_20180106_ju-2_unmapped_single.bed.gz
94.79 kB
m6a_ctrl_24h_20180106_ju-2_unmapped_skipped.bam
3.47 kB
m6a_ctrl_24h_20180106_ju-2_unmapped_reads_single.bed.gz
99.88 kB
m6a_ctrl_24h_20180106_ju-2_unmapped_single.bedgraph
349.93 kB
m6a_ctrl_24h_20180106_ju-2_unmapped_singleAndMulti.bed.gz
429.10 kB
Paraclu
peaks.bed.gz
397 B
iCount xlsites
demux_NNNNGGAGCNNN_skipped.bam
6.12 MB
demux_NNNNGGAGCNNN_unique.bed.gz
2.30 MB
demux_NNNNGGAGCNNN_multi.bed.gz
7.24 MB
demux_NNNNGGAGCNNN_unique.bedgraph
9.99 MB
iCount xlsites
igg_rabbit_igg_20180106_ju-2_unmapped_skipped.bam
2.93 kB
igg_rabbit_igg_20180106_ju-2_unmapped_single.bed.gz
3.69 kB
igg_rabbit_igg_20180106_ju-2_unmapped_single.bedgraph
11.70 kB
igg_rabbit_igg_20180106_ju-2_unmapped_singleAndMulti.bed.gz
27.16 kB
igg_rabbit_igg_20180106_ju-2_unmapped_reads_single.bed.gz
3.98 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNTGTATNNN_trimmed.fastq.gz
80.98 MB
demux_NNNNTGTATNNN_trimmed_fastqc.zip
516.12 kB
iCount RNA-maps
results.tar.gz
257.24 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNCATACNNN_trimmed_fastqc.zip
514.52 kB
demux_NNNNCATACNNN_trimmed.fastq.gz
339.52 MB
STAR
demux_NNNNCATACNNN_unmapped.out.mate1.fastq.gz
147.68 MB
demux_NNNNCATACNNN.bam
1.42 GB
demux_NNNNCATACNNN_SJ.out.tab
178.60 kB
demux_NNNNCATACNNN.bam.bai
3.24 MB
demux_NNNNCATACNNN_stats.txt
1.81 kB
iCount annotate
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_annotated.bedgraph
1.82 MB
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_annotated.bed.gz
674.13 kB
iCount summary
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_single_summary_gene.tsv
409.36 kB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_single_summary_subtype.tsv
1005 B
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_single_summary_type.tsv
453 B
iCount xlsites
demux_NNNNCTGTANNN_unique.bed.gz
249.08 kB
demux_NNNNCTGTANNN_unique.bedgraph
948.03 kB
demux_NNNNCTGTANNN_multi.bed.gz
1.39 MB
demux_NNNNCTGTANNN_skipped.bam
4.28 MB
iCount xlsites
m1a_786o_ctrl-4h_20180413_ju_unmapped_reads_single.bed.gz
144.64 kB
m1a_786o_ctrl-4h_20180413_ju_unmapped_skipped.bam
4.52 kB
m1a_786o_ctrl-4h_20180413_ju_unmapped_single.bed.gz
135.58 kB
m1a_786o_ctrl-4h_20180413_ju_unmapped_singleAndMulti.bed.gz
558.86 kB
m1a_786o_ctrl-4h_20180413_ju_unmapped_single.bedgraph
487.78 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
686 B
demux_NNNNCTGATNNN_trimmed.fastq.gz
103.00 MB
demux_NNNNCTGATNNN_trimmed_fastqc.zip
511.59 kB
iCount peaks
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_peaks.bed.gz
60.27 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_peaks.bedgraph
121.51 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_scores.tsv.gz
448.22 kB
iCount xlsites
demux_NNNNGTAGANNN_multi.bed.gz
2.82 MB
demux_NNNNGTAGANNN_unique.bedgraph
2.68 MB
demux_NNNNGTAGANNN_skipped.bam
9.77 MB
demux_NNNNGTAGANNN_unique.bed.gz
682.01 kB
iCount summary
igg_786o_mouse-igg_20180413_ju_unmapped_single_summary_type.tsv
440 B
igg_786o_mouse-igg_20180413_ju_unmapped_single_summary_subtype.tsv
916 B
igg_786o_mouse-igg_20180413_ju_unmapped_single_summary_gene.tsv
59.71 kB
iCount xlsites
m6a_786o_ctrl-15min_20180413_ju_unmapped_skipped.bam
2.93 kB
m6a_786o_ctrl-15min_20180413_ju_unmapped_singleAndMulti.bed.gz
227.33 kB
m6a_786o_ctrl-15min_20180413_ju_unmapped_reads_single.bed.gz
44.38 kB
m6a_786o_ctrl-15min_20180413_ju_unmapped_single.bedgraph
135.72 kB
m6a_786o_ctrl-15min_20180413_ju_unmapped_single.bed.gz
39.95 kB
Cutadapt (single-end)
report.txt
743 B
fastqc
Directory
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
499.77 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
9.15 MB
iCount summary
demux_NNNNCAAGTNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAAGTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
639 B
demux_NNNNCAAGTNNN_trimmed_single_summary.tsv_summary_gene.tsv
647.28 kB
iCount xlsites
demux_NNNNGTTTCNNN_unique.bed.gz
374.01 kB
demux_NNNNGTTTCNNN_skipped.bam
6.25 MB
demux_NNNNGTTTCNNN_multi.bed.gz
1.68 MB
demux_NNNNGTTTCNNN_unique.bedgraph
1.45 MB
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
7.00 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
1.04 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
1005 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
2.80 kB
iCount annotate
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_annotated.bed.gz
555.44 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_annotated.bedgraph
1.46 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
711 B
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
510.35 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.fastq.gz
59.01 MB
STAR
demux_NNNNGTAGANNN_stats.txt
1.82 kB
demux_NNNNGTAGANNN.bam.bai
3.66 MB
demux_NNNNGTAGANNN.bam
1.90 GB
demux_NNNNGTAGANNN_SJ.out.tab
379.90 kB
demux_NNNNGTAGANNN_unmapped.out.mate1.fastq.gz
184.25 MB
Reads (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
10.66 GB
stderr.txt
875 B
demux_nomatch_fastqc.zip
479.30 kB
iCount xlsites
demux_NNNNTCACANNN_trimmed_skipped.bam
3.18 kB
demux_NNNNTCACANNN_trimmed_single.bed.gz
287.25 kB
demux_NNNNTCACANNN_trimmed_singleAndMulti.bed.gz
1.33 MB
demux_NNNNTCACANNN_trimmed_single.bedgraph
1.10 MB
iCount summary
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_single_summary_subtype.tsv
1009 B
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_single_summary_gene.tsv
585.37 kB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_single_summary_type.tsv
461 B
FASTQ file (single-end)
m1a-786o-ctrl-15min-20180413-ju.fastq.gz
151.63 MB
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju_fastqc.zip
556.51 kB
stderr.txt
1.21 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-4h-20180413-ju.fastq.gz
447.15 MB
m6a-786o-noq-4h-20180413-ju_fastqc.zip
509.88 kB
stderr.txt
1.13 kB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-ctrl-15min-20180413-ju_fastqc.zip
511.90 kB
stderr.txt
1.23 kB
m62a-786o-ctrl-15min-20180413-ju.fastq.gz
530.35 MB
FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
1.28 GB
stderr.txt
875 B
demux_nomatch_fastqc.zip
465.19 kB
iCount summary
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_summary.tsv_summary_type.tsv
266 B
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
643 B
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
831.08 kB
iCount RNA-maps
results.tar.gz
275.40 kB
iCount xlsites
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_singleAndMulti.bed.gz
414.40 kB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_reads_single.bed.gz
104.43 kB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single.bed.gz
97.70 kB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_skipped.bam
3.73 kB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single.bedgraph
349.30 kB
iCount xlsites
m62a_786o_noq-4h_20180413_ju_unmapped_single.bed.gz
51.66 kB
m62a_786o_noq-4h_20180413_ju_unmapped_skipped.bam
5.18 kB
m62a_786o_noq-4h_20180413_ju_unmapped_reads_single.bed.gz
58.11 kB
m62a_786o_noq-4h_20180413_ju_unmapped_single.bedgraph
179.47 kB
m62a_786o_noq-4h_20180413_ju_unmapped_singleAndMulti.bed.gz
312.18 kB
STAR
demux_NNNNCAGAANNN_unmapped.out.mate1.fastq.gz
130.68 MB
demux_NNNNCAGAANNN_stats.txt
1.81 kB
demux_NNNNCAGAANNN.bam
2.24 GB
demux_NNNNCAGAANNN_SJ.out.tab
162.30 kB
demux_NNNNCAGAANNN.bam.bai
3.84 MB
iCount summary
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_summary.tsv_summary_subtype.tsv
637 B
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_summary.tsv_summary_type.tsv
262 B
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_summary.tsv_summary_gene.tsv
652.46 kB
iCount RNA-maps
results.tar.gz
362.98 kB
Paraclu
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
117 B
iCount RNA-maps
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
62.91 kB
iCount summary
igg-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
436 B
igg-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
974 B
igg-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
35.61 kB
iCount xlsites
demux_NNNNTGTATNNN_trimmed_reads_single.bed.gz
82.73 kB
demux_NNNNTGTATNNN_trimmed_singleAndMulti.bed.gz
848.51 kB
demux_NNNNTGTATNNN_trimmed_single.bedgraph
278.54 kB
demux_NNNNTGTATNNN_trimmed_single.bed.gz
74.41 kB
demux_NNNNTGTATNNN_trimmed_skipped.bam
2.93 kB
iCount RNA-maps
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single.tar.gz
510.41 kB
Paraclu
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
5.78 kB
iCount xlsites
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
266 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
45.08 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
37.28 kB
iCount reads proxy
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
499.43 kB
fastqc
Directory
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
9.15 MB
stderr.txt
2.12 kB
STAR
m6a-786o-noq-24h-20180106-ju_trimmed.bam
148.85 MB
m6a-786o-noq-24h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
26.94 MB
m6a-786o-noq-24h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-24h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-24h-20180106-ju_trimmed.bw
106.52 kB
m6a-786o-noq-24h-20180106-ju_trimmed_SJ.out.tab
0 B
iCount summary
igg-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
260 B
igg-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
623 B
igg-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
295.87 kB
STAR
demux_NNNNGTAGANNN_trimmed.bam
1.54 GB
demux_NNNNGTAGANNN_trimmed_unmapped.out.mate1.fastq.gz
133.05 MB
demux_NNNNGTAGANNN_trimmed_SJ.out.tab
357.85 kB
demux_NNNNGTAGANNN_trimmed.bam.bai
3.60 MB
demux_NNNNGTAGANNN_trimmed_stats.txt
1.81 kB
Cutadapt (single-end)
fastqc
Directory
igg-786o-rabbit-igg-20180106-ju_trimmed_fastqc.zip
560.06 kB
igg-786o-rabbit-igg-20180106-ju_trimmed.fastq.gz
14.40 MB
report.txt
698 B
FASTQ file (single-end)
fastqc
Directory
m6a-786o-wtvhl-20180420-ju.fastq.gz
304.22 MB
stderr.txt
1.11 kB
m6a-786o-wtvhl-20180420-ju_fastqc.zip
541.01 kB
iCount RNA-maps
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single.tar.gz
465.26 kB
Paraclu
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
5.59 kB
STAR
m62a-786o-noq-15min-20180413-ju_trimmed.bam
671.63 MB
m62a-786o-noq-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-noq-15min-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-noq-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
168.81 MB
m62a-786o-noq-15min-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m62a-786o-ctrl-4h-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-ctrl-4h-20180413-ju_trimmed_single.bed.gz
78.42 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_reads_single.bed.gz
91.47 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_single.bedgraph
224 B
m62a-786o-ctrl-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
111.17 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.62 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_fastqc.zip
497.06 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped.fastq.gz
168.81 MB
iCount xlsites
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single.bed.gz
255.53 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.17 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
300.25 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_skipped.bam
2.92 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single.bedgraph
977.08 kB
iCount xlsites
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single.bed.gz
287.22 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
336.63 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_skipped.bam
4.44 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single.bedgraph
1.08 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.39 MB
iCount xlsites
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_skipped.bam
3.17 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single.bedgraph
1.10 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single.bed.gz
292.87 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
344.99 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.32 MB
STAR
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped.bam.bai
3.13 MB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
52.84 MB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_SJ.out.tab
124.37 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped.bam
414.28 MB
iCount xlsites
demux_NNNNTGAAANNN_skipped.bam
4.49 MB
demux_NNNNTGAAANNN_multi.bed.gz
6.89 MB
demux_NNNNTGAAANNN_unique.bedgraph
4.68 MB
demux_NNNNTGAAANNN_unique.bed.gz
1.22 MB
iCount summary
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_gene.tsv
111.45 kB
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_type.tsv
261 B
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
935.54 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
1.53 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
2.21 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
2.42 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
15.76 kB
iCount reads proxy
stderr.txt
1.36 kB
fastqc
Directory
m6a_786o_noq-4h_20180413_ju_unmapped.fastq.gz
39.61 MB
m6a_786o_noq-4h_20180413_ju_unmapped_fastqc.zip
482.51 kB
iCount reads proxy
fastqc
Directory
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
379.93 kB
stderr.txt
1.16 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
606.18 kB
Cutadapt (single-end)
report.txt
706 B
fastqc
Directory
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
43.80 MB
iCount reads proxy
fastqc
Directory
stderr.txt
2.16 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
41.09 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
771.95 kB
iCount peaks
demux_NNNNGTAACNNN_unique_peaks.bed.gz
61.64 kB
demux_NNNNGTAACNNN_unique_peaks.bedgraph
138.09 kB
demux_NNNNGTAACNNN_unique_scores.tsv.gz
352.17 kB
iCount reads proxy
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
1021.15 kB
fastqc
Directory
stderr.txt
2.16 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
667.79 kB
iCount RNA-maps
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
188.43 kB
iCount summary
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
356 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
459 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
2.03 kB
iCount RNA-maps
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
63.23 kB
Paraclu
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
iCount RNA-maps
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
150.42 kB
iCount summary
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
528 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
427 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
10.55 kB
Paraclu
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
117 B
iCount RNA-maps
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
166.38 kB
iCount reads proxy
stderr.txt
2.05 kB
fastqc
Directory
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
937.12 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
677.95 kB
Paraclu
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
117 B
Paraclu
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
iCount reads proxy
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
557.84 kB
fastqc
Directory
stderr.txt
1.41 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
401.45 kB
iCount reads proxy
fastqc
Directory
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291.00 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
591.46 kB
stderr.txt
968 B
iCount reads proxy
fastqc
Directory
stderr.txt
1.08 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
328.05 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
564.52 kB
iCount summary
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
567 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
419 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
4.44 kB
Paraclu
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
iCount RNA-maps
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
161.86 kB
iCount RNA-maps
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
166.25 kB
Paraclu
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
Cutadapt (single-end)
fastqc
Directory
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.fastq.gz
561.32 kB
report.txt
719 B
iCount RNA-maps
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
56.00 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
703 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
1.27 MB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
2.35 MB
report.txt
705 B
Cutadapt (single-end)
fastqc
Directory
report.txt
703 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
1.16 MB
Paraclu
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
Cutadapt (single-end)
fastqc
Directory
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.fastq.gz
1.22 MB
report.txt
722 B
Cutadapt (single-end)
fastqc
Directory
report.txt
706 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
2.20 MB
Cutadapt (single-end)
report.txt
722 B
fastqc
Directory
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.fastq.gz
635.39 kB
iCount summary
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
428 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
708 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
4.07 kB
iCount summary
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
312 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
2.68 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
526 B
iCount xlsites
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
19.02 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
3.82 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
11.25 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
3.66 kB
STAR
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
454.61 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
5.21 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.30 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
1.73 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.55 MB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.79 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
1021.15 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.64 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
10.22 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
4.44 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.31 kB
STAR
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_unmapped.out.mate1.fastq.gz
291.00 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam
1.30 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_SJ.out.tab
1.12 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bw
15.76 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam.bai
1.50 MB
STAR
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
379.93 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.55 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
6.92 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
2.22 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.16 kB
iCount xlsites
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_singleAndMulti.bed.gz
39.74 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bedgraph
14.83 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bed.gz
4.84 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_reads_single.bed.gz
5.22 kB
iCount xlsites
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bed.gz
7.67 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_singleAndMulti.bed.gz
149.22 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_reads_single.bed.gz
8.22 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bedgraph
24.26 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.15 kB
GAM599A1-A30_S13_L002_R1_001.fastq.gz
16.45 GB
GAM599A1-A30_S13_L002_R1_001_fastqc.zip
557.55 kB
FASTQ file (single-end)
stderr.txt
1.19 kB
fastqc
Directory
igg-786o-mouse-igg-20180413-ju.fastq.gz
23.14 MB
igg-786o-mouse-igg-20180413-ju_fastqc.zip
508.66 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-15min-20180413-ju.fastq.gz
375.26 MB
stderr.txt
1.19 kB
m6a-786o-noq-15min-20180413-ju_fastqc.zip
516.44 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-4h-20180413-ju.fastq.gz
201.53 MB
m1a-786o-noq-4h-20180413-ju_fastqc.zip
558.38 kB
stderr.txt
1.13 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.36 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz
289.08 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_fastqc.zip
555.31 kB
iCount xlsites
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bed.gz
7.28 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bedgraph
22.54 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_singleAndMulti.bed.gz
48.36 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_reads_single.bed.gz
7.80 kB
FASTQ file (single-end)
m62a-786o-noq-4h-20180413-ju.fastq.gz
317.46 MB
fastqc
Directory
stderr.txt
1.15 kB
m62a-786o-noq-4h-20180413-ju_fastqc.zip
515.65 kB
FASTQ file (single-end)
m1a-786o-ctrl-3min-20180413-ju.fastq.gz
82.87 MB
fastqc
Directory
stderr.txt
1.19 kB
m1a-786o-ctrl-3min-20180413-ju_fastqc.zip
560.99 kB
FASTQ file (single-end)
stderr.txt
1.40 kB
fastqc
Directory
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_fastqc.zip
557.47 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju.fastq.gz
87.05 MB
FASTQ file (single-end)
m1a-786o-ctrl-15min-20180413-ju-2.fastq.gz
47.62 MB
fastqc
Directory
stderr.txt
1.25 kB
m1a-786o-ctrl-15min-20180413-ju-2_fastqc.zip
556.85 kB
STAR
m6a-786o-noq-15min-20180106-ju_trimmed.bam
35.35 MB
m6a-786o-noq-15min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-15min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
6.76 MB
m6a-786o-noq-15min-20180106-ju_trimmed.bam.bai
19.51 kB
m6a-786o-noq-15min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-15min-20180106-ju_trimmed.bw
105.84 kB
FASTQ file (single-end)
m1a-786o-noq-15min-20180413-ju-2.fastq.gz
52.08 MB
fastqc
Directory
stderr.txt
1.23 kB
m1a-786o-noq-15min-20180413-ju-2_fastqc.zip
562.53 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-4h-20180413-ju-2.fastq.gz
80.67 MB
stderr.txt
1.17 kB
m1a-786o-noq-4h-20180413-ju-2_fastqc.zip
544.64 kB
FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2.fastq.gz
66.45 MB
fastqc
Directory
stderr.txt
1.40 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_fastqc.zip
541.71 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
1.88 kB
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bed.gz
7.17 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_singleAndMulti.bed.gz
43.49 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bedgraph
22.18 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_reads_single.bed.gz
7.69 kB
FASTQ file (single-end)
m1a-786o-noq-15min-20180413-ju.fastq.gz
355.98 MB
fastqc
Directory
stderr.txt
1.19 kB
m1a-786o-noq-15min-20180413-ju_fastqc.zip
553.69 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.21 kB
m62a-786o-noq-15min-20180413-ju_fastqc.zip
519.78 kB
m62a-786o-noq-15min-20180413-ju.fastq.gz
462.69 MB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
327.16 MB
stderr.txt
1.44 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
520.71 kB
STAR
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
768.30 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
364 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
419.57 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.18 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.38 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.38 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz
379.34 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_fastqc.zip
516.19 kB
FASTQ file (single-end)
m1a-786o-ctrl-4h-20180413-ju-2.fastq.gz
67.29 MB
fastqc
Directory
stderr.txt
1.19 kB
m1a-786o-ctrl-4h-20180413-ju-2_fastqc.zip
551.75 kB
FASTQ file (single-end)
fastqc
Directory
igg-786o-rabbit-igg-20180413-ju_fastqc.zip
539.33 kB
igg-786o-rabbit-igg-20180413-ju.fastq.gz
43.14 MB
stderr.txt
1.27 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.21 kB
m6a-786o-ctrl-15min-20180413-ju.fastq.gz
357.85 MB
m6a-786o-ctrl-15min-20180413-ju_fastqc.zip
506.91 kB
FASTQ file (single-end)
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
511.72 kB
fastqc
Directory
stderr.txt
1.42 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
404.78 MB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-plusdm-akg-4h-20180413-ju_fastqc.zip
511.68 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju.fastq.gz
418.30 MB
stderr.txt
1.34 kB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
959.23 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.40 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.67 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.54 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
767 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.15 kB
m6a-786o-ctrl-4h-20180413-ju_fastqc.zip
504.73 kB
m6a-786o-ctrl-4h-20180413-ju.fastq.gz
244.61 MB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
273.23 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
554.04 kB
stderr.txt
1.49 kB
FASTQ file (single-end)
m1a-786o-ctrl-4h-20180413-ju.fastq.gz
374.22 MB
fastqc
Directory
stderr.txt
1.15 kB
m1a-786o-ctrl-4h-20180413-ju_fastqc.zip
558.69 kB
STAR
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.40 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
649.94 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.36 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
476 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
345.28 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.33 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.38 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
449 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
890.66 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.50 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
330.01 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
825.27 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.40 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
17.08 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
333 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
iCount xlsites
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
914 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
847 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
4.54 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
2.36 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.38 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
684.71 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
113 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
273.40 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.88 kB
iCount xlsites
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
1.24 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
5.84 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
3.67 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
1.32 kB
iCount xlsites
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bed.gz
18.14 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_reads_single.bed.gz
19.29 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bedgraph
59.44 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_singleAndMulti.bed.gz
309.67 kB
iCount xlsites
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
3.30 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
561 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
524 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
1.42 kB
iCount xlsites
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
1.59 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
6.79 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
4.50 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
1.49 kB
iCount summary
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
426 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
5.96 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
585 B
STAR
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
40.96 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.45 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
17.60 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
1.50 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
59.76 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
1005 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
2.80 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
1.04 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
7.00 kB
iCount summary
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
645 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
3.23 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
425 B
FASTQ file (single-end)
igg-786o-rabbit-igg-20180106-ju.fastq.gz
12.51 MB
igg-786o-rabbit-igg-20180106-ju_fastqc.zip
569.95 kB
stderr.txt
1.26 kB
fastqc
Directory
iCount annotate
m6A_786O__20180420_JU_1Rep_grouped_annotated.bed.gz
122.97 kB
m6A_786O__20180420_JU_1Rep_grouped_annotated.bedgraph
295.55 kB
K-mers
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
1.08 kB
K-mers
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
1018 B
K-mers
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single.tar.gz
2.42 MB
Paraclu
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single_peaks.bed.gz
140 B
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-24hr-20180106-ju_fastqc.zip
447.12 kB
m6a-786o-noq-dm-akg-24hr-20180106-ju.fastq.gz
109.23 MB
stderr.txt
1.36 kB
iCount xlsites
m62a_786o_noq-15min_20180413_ju_unmapped_skipped.bam
3.50 kB
m62a_786o_noq-15min_20180413_ju_unmapped_single.bed.gz
62.22 kB
m62a_786o_noq-15min_20180413_ju_unmapped_reads_single.bed.gz
69.40 kB
m62a_786o_noq-15min_20180413_ju_unmapped_single.bedgraph
217.08 kB
m62a_786o_noq-15min_20180413_ju_unmapped_singleAndMulti.bed.gz
372.89 kB
iCount summary
Input_Control 15min_20180223_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
675.05 kB
Input_Control 15min_20180223_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
641 B
Input_Control 15min_20180223_JU_1Rep_grouped_summary.tsv_summary_type.tsv
264 B
Paraclu
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
31.49 kB
iCount summary
m6A_786O__Ctrl_7Reps_grouped_summary.tsv_summary_subtype.tsv
652 B
m6A_786O__Ctrl_7Reps_grouped_summary.tsv_summary_type.tsv
273 B
m6A_786O__Ctrl_7Reps_grouped_summary.tsv_summary_gene.tsv
1.17 MB
iCount annotate
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_annotated.bed.gz
261.77 kB
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_annotated.bedgraph
731.76 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-24hr-20180106-ju.fastq.gz
90.98 MB
stderr.txt
1.23 kB
m6a-786o-noq-24hr-20180106-ju_fastqc.zip
457.47 kB
Paraclu
peaks.bed.gz
310 B
Paraclu
peaks.bed.gz
35 B
iCount xlsites
m1a_786o_ctrl-15min_20180413_ju_unmapped_single.bed.gz
63.27 kB
m1a_786o_ctrl-15min_20180413_ju_unmapped_skipped.bam
3.14 kB
m1a_786o_ctrl-15min_20180413_ju_unmapped_reads_single.bed.gz
67.64 kB
m1a_786o_ctrl-15min_20180413_ju_unmapped_single.bedgraph
224.11 kB
m1a_786o_ctrl-15min_20180413_ju_unmapped_singleAndMulti.bed.gz
282.73 kB
FASTQ file (single-end)
m6a-786o-ctrl-24r-20180106-ju.fastq.gz
57.59 MB
fastqc
Directory
m6a-786o-ctrl-24r-20180106-ju_fastqc.zip
435.60 kB
stderr.txt
1.23 kB
FASTQ file (single-end)
m6a-786o-noq-dm-akg-4hr-20180106-ju.fastq.gz
118.19 MB
fastqc
Directory
m6a-786o-noq-dm-akg-4hr-20180106-ju_fastqc.zip
442.94 kB
stderr.txt
1.34 kB
Paraclu
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
30.70 kB
iCount RNA-maps
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single.tar.gz
1.08 MB
iCount RNA-maps
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single.tar.gz
1.14 MB
Paraclu
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
37.94 kB
iCount summary
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
798 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
444 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
47.83 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-ctrl-4hr-20180106-ju.fastq.gz
109.91 MB
m6a-786o-ctrl-4hr-20180106-ju_fastqc.zip
444.81 kB
stderr.txt
1.23 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
1.88 kB
iCount summary
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
472 B
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.29 MB
Paraclu
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
23.60 kB
K-mers
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped.tar.gz
59.38 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-15min-20180106-ju.fastq.gz
35.06 MB
stderr.txt
1.25 kB
m6a-786o-noq-15min-20180106-ju_fastqc.zip
521.09 kB
Upload iCount sample annotation
UN1711_PG_1-lane17_PG_reupload.xlsx
13.62 kB
UN1711_PG_1-lane17_PG_reupload.tab.gz
1.25 kB
iCount xlsites
m6a-786o-20180420-jufastqgz_unmapped_single.bed.gz
137.71 kB
m6a-786o-20180420-jufastqgz_unmapped_reads_single.bed.gz
151.87 kB
m6a-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
591.15 kB
m6a-786o-20180420-jufastqgz_unmapped_skipped.bam
3.93 kB
m6a-786o-20180420-jufastqgz_unmapped_single.bedgraph
499.81 kB
STAR
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
2.51 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
1.96 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
13.94 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
31.71 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
17.43 kB
FASTQ file (single-end)
m6a-786o-ctrl-15min-20180106-ju_fastqc.zip
502.69 kB
fastqc
Directory
m6a-786o-ctrl-15min-20180106-ju.fastq.gz
29.93 MB
stderr.txt
1.26 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.58 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.fastq.gz
6.05 MB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_fastqc.zip
556.93 kB
Paraclu
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
154 B
iCount RNA-maps
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single.tar.gz
358.12 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-3min-20180106-ju.fastq.gz
77.77 MB
stderr.txt
1.36 kB
m6a-786o-noq-dm-akg-3min-20180106-ju_fastqc.zip
444.97 kB
FASTQ file (single-end)
m6a-786o-noq-3min-20180106-ju.fastq.gz
58.62 MB
fastqc
Directory
m6a-786o-noq-3min-20180106-ju_fastqc.zip
507.31 kB
stderr.txt
1.23 kB
STAR
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
2.27 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
20.34 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
18.08 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
25.97 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
4.40 MB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-ctrl-3min-20180106-ju_fastqc.zip
462.14 kB
stderr.txt
1.25 kB
m6a-786o-ctrl-3min-20180106-ju.fastq.gz
55.68 MB
iCount summary
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single_summary_type.tsv
468 B
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.10 MB
K-mers
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped.tar.gz
307.21 kB
iCount summary
m1A_786O_10Reps_grouped_summary.tsv_summary_gene.tsv
1.06 MB
m1A_786O_10Reps_grouped_summary.tsv_summary_subtype.tsv
657 B
m1A_786O_10Reps_grouped_summary.tsv_summary_type.tsv
274 B
Cutadapt (single-end)
fastqc
Directory
igg-786o-rabbit-igg-20180106-ju_trimmed.fastq.gz
12.96 MB
report.txt
667 B
iCount summary
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
312 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
2.68 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
526 B
Cutadapt (single-end)
report.txt
674 B
fastqc
Directory
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed.fastq.gz
112.47 MB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-24hr-20180106-ju_trimmed.fastq.gz
93.64 MB
report.txt
667 B
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed.fastq.gz
121.53 MB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-4hr-20180106-ju_trimmed.fastq.gz
139.65 MB
report.txt
666 B
iCount summary
m6a_786o_ctrl-15min_20180413_ju_unmapped_single_summary_subtype.tsv
940 B
m6a_786o_ctrl-15min_20180413_ju_unmapped_single_summary_type.tsv
452 B
m6a_786o_ctrl-15min_20180413_ju_unmapped_single_summary_gene.tsv
150.62 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed.fastq.gz
40.67 MB
report.txt
674 B
Cutadapt (single-end)
fastqc
Directory
m6a-786o-ctrl-4hr-20180106-ju_trimmed.fastq.gz
113.03 MB
report.txt
667 B
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
m6a-786o-noq-15min-20180106-ju_trimmed.fastq.gz
36.22 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed.fastq.gz
79.88 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
m6a-786o-noq-3min-20180106-ju_trimmed.fastq.gz
60.24 MB
STAR
igg-786o-rabbit-igg-20180106-ju_trimmed_SJ.out.tab
0 B
igg-786o-rabbit-igg-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
2.34 MB
igg-786o-rabbit-igg-20180106-ju_trimmed_stats.txt
1.78 kB
igg-786o-rabbit-igg-20180106-ju_trimmed.bam.bai
19.09 kB
igg-786o-rabbit-igg-20180106-ju_trimmed.bam
12.25 MB
igg-786o-rabbit-igg-20180106-ju_trimmed.bw
105.61 kB
STAR
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
32.76 MB
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed.bam
134.59 MB
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_stats.txt
1.78 kB
iCount summary
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single_summary_type.tsv
269 B
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single_summary_subtype.tsv
649 B
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single_summary_gene.tsv
970.18 kB
STAR
m6a-786o-noq-24hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
26.86 MB
m6a-786o-noq-24hr-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-24hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-24hr-20180106-ju_trimmed.bam
112.90 MB
m6a-786o-noq-24hr-20180106-ju_trimmed_SJ.out.tab
0 B
STAR
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
38.33 MB
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed.bam
145.91 MB
STAR
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
8.33 MB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed.bam.bai
19.09 kB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed.bam
39.74 MB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed.bw
105.75 kB
STAR
m6a-786o-noq-4hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-4hr-20180106-ju_trimmed.bam
167.36 MB
m6a-786o-noq-4hr-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-4hr-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-4hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
44.67 MB
STAR
m6a-786o-ctrl-4hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
33.44 MB
m6a-786o-ctrl-4hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-4hr-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-4hr-20180106-ju_trimmed.bam
134.03 MB
m6a-786o-ctrl-4hr-20180106-ju_trimmed_SJ.out.tab
0 B
STAR
m6a-786o-ctrl-15min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
6.05 MB
m6a-786o-ctrl-15min-20180106-ju_trimmed.bam
29.51 MB
m6a-786o-ctrl-15min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-15min-20180106-ju_trimmed.bw
105.63 kB
m6a-786o-ctrl-15min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-15min-20180106-ju_trimmed.bam.bai
19.02 kB
STAR
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed.bam
95.42 MB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
23.06 MB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_stats.txt
1.78 kB
STAR
m6a-786o-noq-3min-20180106-ju_trimmed.bam.bai
20.49 kB
m6a-786o-noq-3min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
18.12 MB
m6a-786o-noq-3min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-3min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-3min-20180106-ju_trimmed.bam
72.24 MB
STAR
m6a-786o-ctrl-3min-20180106-ju_trimmed.bam.bai
20.49 kB
m6a-786o-ctrl-3min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-3min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
15.98 MB
m6a-786o-ctrl-3min-20180106-ju_trimmed_SJ.out.tab
0 B
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iCount xlsites
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Paraclu
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iCount reads proxy
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Directory
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m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_fastqc.zip
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iCount xlsites
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iCount reads proxy
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STAR
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iCount xlsites
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iCount reads proxy
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STAR
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iCount xlsites
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iCount reads proxy
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iCount reads proxy
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STAR
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iCount xlsites
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iCount reads proxy
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Directory
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stderr.txt
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iCount xlsites
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iCount xlsites
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iCount reads proxy
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fastqc
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iCount xlsites
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iCount reads proxy
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iCount xlsites
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iCount xlsites
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STAR
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iCount reads proxy
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fastqc
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iCount reads proxy
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fastqc
Directory
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STAR
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iCount summary
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STAR
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iCount reads proxy
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fastqc
Directory
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STAR
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STAR
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iCount xlsites
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STAR
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STAR
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STAR
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m6a-786o-noq-24hr-20180106-jufastqgz_unmapped.bam
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STAR
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447.58 MB
m62a-786o-noq-4h-20180413-ju_trimmed.bam.bai
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STAR
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2.92 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_stats.txt
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34.75 MB
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STAR
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STAR
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STAR
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m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped.bam.bai
1.63 MB
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10.22 MB
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STAR
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74.27 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_SJ.out.tab
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m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam
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m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam.bai
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STAR
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10.12 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped.bam.bai
3.60 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_SJ.out.tab
858.04 kB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped.bam
80.37 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped.bw
39.04 kB
STAR
m6a-786o-noq-15min-20180106-jufastqgz_unmapped.bam
8.43 MB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
1.50 MB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped.bam.bai
1.59 MB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped.bw
18.55 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_SJ.out.tab
8.18 kB
STAR
m62a-786o-noq-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m62a-786o-noq-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
104.01 MB
m62a-786o-noq-15min-20180413-ju_trimmed_SJ.out.tab
0 B
m62a-786o-noq-15min-20180413-ju_trimmed.bam
597.02 MB
m62a-786o-noq-15min-20180413-ju_trimmed_stats.txt
1.79 kB
STAR
m62a-786o-ctrl-15min-20180413-ju_trimmed.bam
705.53 MB
m62a-786o-ctrl-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
121.53 MB
m62a-786o-ctrl-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_SJ.out.tab
0 B
STAR
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
69.20 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam
618.74 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_SJ.out.tab
0 B
STAR
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped.bam
61.20 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped.bw
33.31 kB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped.bam.bai
3.33 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
7.70 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_SJ.out.tab
663.60 kB
STAR
m1a-786o-noq-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
51.29 MB
m1a-786o-noq-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m1a-786o-noq-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-4h-20180413-ju_trimmed.bam
430.76 MB
m1a-786o-noq-4h-20180413-ju_trimmed_stats.txt
1.79 kB
STAR
m1a-786o-ctrl-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
40.27 MB
m1a-786o-ctrl-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed.bam
293.10 MB
m1a-786o-ctrl-15min-20180413-ju_trimmed_SJ.out.tab
0 B
STAR
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_SJ.out.tab
347.48 kB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped.bam.bai
3.25 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped.bam
34.33 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.57 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped.bw
29.95 kB
STAR
m1a-786o-noq-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-15min-20180413-ju_trimmed.bam
732.98 MB
m1a-786o-noq-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
89.13 MB
m1a-786o-noq-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-noq-15min-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_skipped.bam
2.90 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_reads_single.bed.gz
12.30 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single.bedgraph
34.70 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single.bed.gz
10.75 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_singleAndMulti.bed.gz
43.25 kB
iCount RNA-maps
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single.tar.gz
318.62 kB
STAR
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped.bam.bai
3.10 MB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_SJ.out.tab
303.39 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.17 MB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped.bam
30.30 MB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped.bw
28.04 kB
STAR
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
125.42 MB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed.bam
488.41 MB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_stats.txt
1.79 kB
iCount xlsites
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_skipped.bam
3.53 kB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
4.20 MB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single.bed.gz
2.30 MB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
2.46 MB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single.bedgraph
10.74 MB
iCount xlsites
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single.bed.gz
1.83 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
3.38 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single.bedgraph
8.47 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
1.96 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_skipped.bam
3.60 kB
STAR
m6a-786o-noq-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
138.77 MB
m6a-786o-noq-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-4h-20180413-ju_trimmed.bam
521.45 MB
m6a-786o-noq-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-noq-4h-20180413-ju_trimmed.bam.bai
20.56 kB
iCount RNA-maps
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single.tar.gz
1012.87 kB
STAR
m6a-786o-ctrl-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
67.78 MB
m6a-786o-ctrl-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-4h-20180413-ju_trimmed.bam
275.92 MB
iCount xlsites
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_skipped.bam
3.40 kB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
4.86 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single.bed.gz
2.53 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
2.76 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single.bedgraph
11.85 MB
iCount xlsites
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_skipped.bam
3.26 kB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
2.40 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single.bedgraph
5.89 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_reads_single.bed.gz
1.39 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single.bed.gz
1.29 MB
Paraclu
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single_peaks.bed.gz
13.22 kB
STAR
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
114.17 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam
449.75 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam.bai
20.56 kB
iCount xlsites
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_skipped.bam
2.90 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single.bed.gz
32.97 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
106.82 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_reads_single.bed.gz
39.01 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single.bedgraph
113.34 kB
K-mers
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped.tar.gz
362.31 kB
iCount xlsites
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single.bed.gz
1.87 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single.bedgraph
8.64 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
3.59 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
2.04 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_skipped.bam
3.07 kB
iCount xlsites
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single.bed.gz
26.05 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_skipped.bam
2.90 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single.bedgraph
88.38 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_reads_single.bed.gz
30.91 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
88.41 kB
STAR
igg-786o-mouse-igg-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
5.39 MB
igg-786o-mouse-igg-20180413-ju_trimmed.bam.bai
20.56 kB
igg-786o-mouse-igg-20180413-ju_trimmed.bam
27.78 MB
igg-786o-mouse-igg-20180413-ju_trimmed_stats.txt
1.78 kB
igg-786o-mouse-igg-20180413-ju_trimmed_SJ.out.tab
0 B
igg-786o-mouse-igg-20180413-ju_trimmed.bw
106.44 kB
iCount xlsites
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
2.39 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
4.33 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single.bed.gz
2.20 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_skipped.bam
3.17 kB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single.bedgraph
10.22 MB
iCount xlsites
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_skipped.bam
3.41 kB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
2.26 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single.bed.gz
1.02 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single.bedgraph
4.50 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_reads_single.bed.gz
1.11 MB
iCount xlsites
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_skipped.bam
2.90 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single.bed.gz
21.69 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single.bedgraph
73.36 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
70.11 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_reads_single.bed.gz
25.87 kB
iCount xlsites
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single.bed.gz
1.24 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
2.58 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_skipped.bam
3.42 kB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_reads_single.bed.gz
1.36 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single.bedgraph
5.60 MB
STAR
m6a-786o-noq-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
106.12 MB
m6a-786o-noq-15min-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-noq-15min-20180413-ju_trimmed.bam
419.22 MB
Paraclu
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
12.37 kB
STAR
m6a-786o-ctrl-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed.bam
393.41 MB
m6a-786o-ctrl-15min-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
101.35 MB
iCount summary
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single_summary_type.tsv
452 B
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single_summary_subtype.tsv
922 B
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single_summary_gene.tsv
63.03 kB
STAR
igg-786o-rabbit-igg-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
10.09 MB
igg-786o-rabbit-igg-20180413-ju_trimmed_SJ.out.tab
0 B
igg-786o-rabbit-igg-20180413-ju_trimmed.bam
49.81 MB
igg-786o-rabbit-igg-20180413-ju_trimmed_stats.txt
1.78 kB
igg-786o-rabbit-igg-20180413-ju_trimmed.bam.bai
20.56 kB
igg-786o-rabbit-igg-20180413-ju_trimmed.bw
106.67 kB
K-mers
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped.tar.gz
151 B
iCount reads proxy
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.fastq.gz
10.09 MB
fastqc
Directory
stderr.txt
1.62 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_fastqc.zip
526.33 kB
iCount reads proxy
fastqc
Directory
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.fastq.gz
106.12 MB
stderr.txt
1.60 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
472.65 kB
iCount xlsites
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_skipped.bam
3.30 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single.bed.gz
909.03 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_reads_single.bed.gz
995.24 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
1.96 MB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single.bedgraph
3.91 MB
iCount summary
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
472 B
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.35 MB
Paraclu
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
23.96 kB
iCount RNA-maps
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single.tar.gz
872.47 kB
K-mers
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped.tar.gz
374.65 kB
iCount RNA-maps
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single.tar.gz
394.54 kB
iCount summary
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.27 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
474 B
iCount summary
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.14 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single_summary_type.tsv
470 B
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
iCount summary
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_summary_type.tsv
458 B
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1009 B
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
195.78 kB
iCount summary
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_summary_type.tsv
454 B
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1005 B
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
155.26 kB
iCount summary
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
472 B
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.38 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
K-mers
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.tar.gz
151 B
iCount summary
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
868 B
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
139.05 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_summary_type.tsv
449 B
iCount RNA-maps
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single.tar.gz
738.99 kB
iCount summary
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.14 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single_summary_type.tsv
468 B
K-mers
m6a-786o-noq-15min-20180106-jufastqgz_unmapped.tar.gz
148 B
Paraclu
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
9.01 kB
K-mers
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped.tar.gz
330.06 kB
K-mers
m6a-786o-noq-3min-20180106-jufastqgz_unmapped.tar.gz
316.43 kB
iCount summary
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single_summary_type.tsv
469 B
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.19 MB
K-mers
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped.tar.gz
371.24 kB
K-mers
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped.tar.gz
358.13 kB
iCount summary
demux_NNNNTCCACNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_subtype.tsv
626 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_gene.tsv
284.53 kB
iCount xlsites
m1a-786o-noq-4h-20180413-ju-2_trimmed_single.bed.gz
46.83 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed_singleAndMulti.bed.gz
87.68 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed_reads_single.bed.gz
54.55 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed_single.bedgraph
206 B
iCount xlsites
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_single.bed.gz
43.63 kB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_singleAndMulti.bed.gz
82.24 kB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_single.bedgraph
208 B
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_reads_single.bed.gz
50.74 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_single.bed.gz
44.55 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_single.bedgraph
236 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_reads_single.bed.gz
51.49 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_singleAndMulti.bed.gz
84.27 kB
iCount xlsites
m1a-786o-noq-15min-20180413-ju-2_trimmed_single.bed.gz
40.10 kB
m1a-786o-noq-15min-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-15min-20180413-ju-2_trimmed_reads_single.bed.gz
46.57 kB
m1a-786o-noq-15min-20180413-ju-2_trimmed_single.bedgraph
212 B
m1a-786o-noq-15min-20180413-ju-2_trimmed_singleAndMulti.bed.gz
76.38 kB
iCount xlsites
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_single.bed.gz
38.91 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_singleAndMulti.bed.gz
74.87 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_reads_single.bed.gz
45.07 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_single.bedgraph
214 B
iCount reads proxy
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
538.12 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.fastq.gz
11.42 MB
stderr.txt
1.66 kB
iCount xlsites
m1a-786o-ctrl-3min-20180413-ju_trimmed_reads_single.bed.gz
43.85 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed_single.bed.gz
36.82 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed_singleAndMulti.bed.gz
74.33 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed_single.bedgraph
208 B
iCount xlsites
m1a-786o-noq-3min-20180413-ju_trimmed_single.bed.gz
39.77 kB
m1a-786o-noq-3min-20180413-ju_trimmed_singleAndMulti.bed.gz
79.18 kB
m1a-786o-noq-3min-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-3min-20180413-ju_trimmed_reads_single.bed.gz
47.22 kB
m1a-786o-noq-3min-20180413-ju_trimmed_single.bedgraph
206 B
iCount reads proxy
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped.fastq.gz
77.45 MB
fastqc
Directory
stderr.txt
1.64 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
502.05 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_single.bed.gz
35.07 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_singleAndMulti.bed.gz
71.69 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_reads_single.bed.gz
41.73 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_single.bedgraph
230 B
iCount xlsites
igg-786o-mouse-igg-20180413-ju-2_trimmed_single.bed.gz
54.34 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed_skipped.bam
3.93 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed_reads_single.bed.gz
68.00 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed_singleAndMulti.bed.gz
104.88 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed_single.bedgraph
212 B
iCount xlsites
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bedgraph
228 B
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bed.gz
80.00 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_reads_single.bed.gz
93.27 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
163.89 kB
iCount xlsites
m62a-786o-ctrl-4h-20180413-ju_trimmed_single.bed.gz
82.47 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
170.94 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_reads_single.bed.gz
96.38 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_single.bedgraph
206 B
iCount xlsites
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
156.33 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_reads_single.bed.gz
89.98 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bed.gz
76.79 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bedgraph
234 B
FASTQ file (single-end)
demux_nomatch.fastq.gz
1.28 GB
fastqc
Directory
demux_nomatch_fastqc.zip
465.20 kB
stderr.txt
935 B
iCount xlsites
m62a-786o-noq-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-noq-15min-20180413-ju_trimmed_single.bed.gz
81.45 kB
m62a-786o-noq-15min-20180413-ju_trimmed_single.bedgraph
210 B
m62a-786o-noq-15min-20180413-ju_trimmed_reads_single.bed.gz
94.84 kB
m62a-786o-noq-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
164.00 kB
iCount xlsites
m1a-786o-noq-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
151.18 kB
m1a-786o-noq-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-4h-20180413-ju_trimmed_single.bed.gz
80.63 kB
m1a-786o-noq-4h-20180413-ju_trimmed_single.bedgraph
202 B
m1a-786o-noq-4h-20180413-ju_trimmed_reads_single.bed.gz
86.86 kB
iCount xlsites
m62a-786o-ctrl-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_single.bed.gz
89.05 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_single.bedgraph
212 B
m62a-786o-ctrl-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
184.78 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_reads_single.bed.gz
103.26 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_reads_single.bed.gz
97.79 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
170.32 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bedgraph
226 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bed.gz
90.79 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
162.84 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bed.gz
87.08 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_reads_single.bed.gz
94.06 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bedgraph
232 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.62 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
522.70 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.fastq.gz
40.27 MB
iCount xlsites
m1a-786o-ctrl-15min-20180413-ju_trimmed_single.bed.gz
75.28 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed_reads_single.bed.gz
81.53 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
137.88 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed_single.bedgraph
210 B
m1a-786o-ctrl-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
iCount xlsites
m1a-786o-ctrl-4h-20180413-ju_trimmed_single.bed.gz
93.26 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed_reads_single.bed.gz
100.74 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
177.56 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed_single.bedgraph
204 B
iCount xlsites
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
162.91 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_reads_single.bed.gz
91.61 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_single.bed.gz
80.42 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_single.bedgraph
224 B
iCount xlsites
m6a-786o-ctrl-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
129.87 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_single.bed.gz
67.21 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_reads_single.bed.gz
77.28 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_single.bedgraph
204 B
m6a-786o-ctrl-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
iCount xlsites
demux_NNNNCCGGANNN_unique.bed.gz
135.99 kB
demux_NNNNCCGGANNN_skipped.bam
1004.89 kB
demux_NNNNCCGGANNN_unique.bedgraph
515.58 kB
demux_NNNNCCGGANNN_multi.bed.gz
878.12 kB
FASTQ file (single-end)
stderr.txt
1.26 kB
fastqc
Directory
m6a-786o-ctrl-15min-20180413-ju.fastq.gz
357.85 MB
m6a-786o-ctrl-15min-20180413-ju_fastqc.zip
506.92 kB
iCount xlsites
m6a-786o-noq-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
166.89 kB
m6a-786o-noq-4h-20180413-ju_trimmed_single.bed.gz
81.42 kB
m6a-786o-noq-4h-20180413-ju_trimmed_single.bedgraph
202 B
m6a-786o-noq-4h-20180413-ju_trimmed_reads_single.bed.gz
92.77 kB
iCount xlsites
igg-786o-rabbit-igg-20180413-ju_trimmed_skipped.bam
3.93 kB
igg-786o-rabbit-igg-20180413-ju_trimmed_singleAndMulti.bed.gz
94.82 kB
igg-786o-rabbit-igg-20180413-ju_trimmed_reads_single.bed.gz
61.41 kB
igg-786o-rabbit-igg-20180413-ju_trimmed_single.bed.gz
53.18 kB
igg-786o-rabbit-igg-20180413-ju_trimmed_single.bedgraph
210 B
FASTQ file (single-end)
stderr.txt
1.40 kB
fastqc
Directory
m6a-786o-noq-plusdm-akg-4h-20180413-ju.fastq.gz
418.30 MB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_fastqc.zip
511.70 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-ctrl-4h-20180413-ju.fastq.gz
244.61 MB
m6a-786o-ctrl-4h-20180413-ju_fastqc.zip
504.74 kB
stderr.txt
1.21 kB
iCount xlsites
igg-786o-mouse-igg-20180413-ju_trimmed_single.bed.gz
58.25 kB
igg-786o-mouse-igg-20180413-ju_trimmed_skipped.bam
3.93 kB
igg-786o-mouse-igg-20180413-ju_trimmed_singleAndMulti.bed.gz
98.77 kB
igg-786o-mouse-igg-20180413-ju_trimmed_single.bedgraph
208 B
igg-786o-mouse-igg-20180413-ju_trimmed_reads_single.bed.gz
63.18 kB
FASTQ file (single-end)
m62a-786o-ctrl-15min-20180413-ju.fastq.gz
530.35 MB
fastqc
Directory
stderr.txt
1.28 kB
m62a-786o-ctrl-15min-20180413-ju_fastqc.zip
511.91 kB
iCount xlsites
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_reads_single.bed.gz
82.11 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bed.gz
69.80 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
144.17 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bedgraph
232 B
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-3min-20180413-ju.fastq.gz
87.05 MB
stderr.txt
1.46 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_fastqc.zip
557.49 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-ctrl-3min-20180413-ju.fastq.gz
82.87 MB
stderr.txt
1.25 kB
m1a-786o-ctrl-3min-20180413-ju_fastqc.zip
561.00 kB
iCount xlsites
m6a-786o-noq-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
139.81 kB
m6a-786o-noq-15min-20180413-ju_trimmed_single.bed.gz
67.02 kB
m6a-786o-noq-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-15min-20180413-ju_trimmed_reads_single.bed.gz
79.07 kB
m6a-786o-noq-15min-20180413-ju_trimmed_single.bedgraph
208 B
FASTQ file (single-end)
fastqc
Directory
m1a-786o-ctrl-4h-20180413-ju-2.fastq.gz
67.29 MB
m1a-786o-ctrl-4h-20180413-ju-2_fastqc.zip
551.76 kB
stderr.txt
1.25 kB
FASTQ file (single-end)
fastqc
Directory
igg-786o-mouse-igg-20180413-ju.fastq.gz
23.14 MB
stderr.txt
1.25 kB
igg-786o-mouse-igg-20180413-ju_fastqc.zip
508.68 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
404.78 MB
stderr.txt
1.48 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
511.74 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-15min-20180413-ju.fastq.gz
355.98 MB
stderr.txt
1.25 kB
m1a-786o-noq-15min-20180413-ju_fastqc.zip
553.71 kB
FASTQ file (single-end)
m1a-786o-ctrl-4h-20180413-ju.fastq.gz
374.22 MB
fastqc
Directory
stderr.txt
1.21 kB
m1a-786o-ctrl-4h-20180413-ju_fastqc.zip
558.70 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-15min-20180413-ju-2.fastq.gz
52.08 MB
stderr.txt
1.28 kB
m1a-786o-noq-15min-20180413-ju-2_fastqc.zip
562.54 kB
iCount peaks
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_peaks.bedgraph
130.66 kB
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_peaks.bed.gz
63.45 kB
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_scores.tsv.gz
476.15 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCTGTANNN.fastq.gz
40.23 MB
demux_NNNNCTGTANNN_fastqc.zip
483.69 kB
stderr.txt
975 B
FASTQ file (single-end)
GAM573A1-A32_S20_L008_R1_001.fastq.gz
4.91 GB
fastqc
Directory
stderr.txt
1.21 kB
GAM573A1-A32_S20_L008_R1_001_fastqc.zip
489.27 kB
STAR
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
8.78 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.bam
26.32 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
16.37 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.69 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.bw
18.79 kB
STAR
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
11.33 MB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
19.55 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.bam
33.49 MB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.bw
19.29 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.77 MB
STAR
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
8.89 MB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.bw
18.69 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.bam
27.09 MB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
15.92 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.73 MB
STAR
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
10.01 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
17.34 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.77 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.bam
30.09 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.bw
19.00 kB
STAR
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.66 MB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.bam
19.89 MB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
6.18 MB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.bw
18.39 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
10.85 kB
STAR
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
37.85 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.81 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
26.48 MB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped.bam
101.98 MB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped.bam.bai
2.07 MB
STAR
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.87 MB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam
123.91 MB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
33.52 MB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bw
25.16 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
109.65 kB
STAR
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam.bai
2.81 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
31.48 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam
125.66 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
116.50 kB
STAR
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.bam
18.36 MB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.67 MB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.bw
18.61 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
5.77 MB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
11.64 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
STAR
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
38.08 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
127.20 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.93 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bam
142.83 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
STAR
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam.bai
3.00 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam
150.13 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
41.82 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
127.24 kB
STAR
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.00 MB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
42.65 MB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam
172.56 MB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
174.16 kB
STAR
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_SJ.out.tab
11.66 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
10.92 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.bam.bai
1.68 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.bam
33.54 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.bw
18.48 kB
iCount summary
m6a_ctrl_15_20180106_ju-2_unmapped_single_summary_subtype.tsv
792 B
m6a_ctrl_15_20180106_ju-2_unmapped_single_summary_type.tsv
439 B
m6a_ctrl_15_20180106_ju-2_unmapped_single_summary_gene.tsv
20.16 kB
STAR
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.63 MB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam
94.87 MB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
24.56 MB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
102.98 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bw
23.90 kB
STAR
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
54.32 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.30 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam
210.03 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
176.25 kB
STAR
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.bam
41.60 MB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
13.43 MB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.bam.bai
1.72 MB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_SJ.out.tab
14.29 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.bw
18.59 kB
STAR
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.85 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bam
129.50 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
147.04 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bw
25.09 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
32.44 MB
STAR
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
44.99 MB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam
178.60 MB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.99 MB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
172.29 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bw
26.61 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
iCount xlsites
m1a_786o_ctrl-3min_20180413_ju_unmapped_skipped.bam
2.93 kB
m1a_786o_ctrl-3min_20180413_ju_unmapped_single.bed.gz
15.35 kB
m1a_786o_ctrl-3min_20180413_ju_unmapped_single.bedgraph
51.32 kB
m1a_786o_ctrl-3min_20180413_ju_unmapped_singleAndMulti.bed.gz
68.91 kB
m1a_786o_ctrl-3min_20180413_ju_unmapped_reads_single.bed.gz
17.09 kB
STAR
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam.bai
2.76 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam
124.29 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
32.61 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
129.78 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bw
24.18 kB
STAR
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam.bai
2.39 MB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bw
22.14 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
19.47 MB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam
73.62 MB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
79.98 kB
STAR
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
42.58 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
155.01 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam
163.18 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bw
24.88 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam.bai
2.92 MB
STAR
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam.bai
3.76 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
44.77 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam
187.81 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bw
30.40 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
332.33 kB
STAR
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.98 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam
92.77 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
22.93 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
181.49 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bw
25.29 kB
STAR
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.bam
169.11 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
39.47 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
321.60 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.bam.bai
3.69 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.bw
29.65 kB
STAR
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.24 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
164.84 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam
152.53 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bw
26.11 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
43.00 MB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-4h-20180413-ju_fastqc.zip
558.39 kB
m1a-786o-noq-4h-20180413-ju.fastq.gz
201.53 MB
stderr.txt
1.19 kB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-noq-4h-20180413-ju.fastq.gz
317.46 MB
stderr.txt
1.21 kB
m62a-786o-noq-4h-20180413-ju_fastqc.zip
515.66 kB
FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2.fastq.gz
66.45 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_fastqc.zip
541.72 kB
fastqc
Directory
stderr.txt
1.46 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2.fastq.gz
75.22 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_fastqc.zip
550.62 kB
stderr.txt
1.52 kB
STAR
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
2.06 MB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.bam.bai
2.01 MB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.bam
10.27 MB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.bw
21.02 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_SJ.out.tab
59.40 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.81 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.fastq.gz
16.78 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
526.63 kB
STAR
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.13 MB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam
136.11 MB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
38.40 MB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
152.09 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bw
25.16 kB
Paraclu
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.25 kB
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
314.99 kB
K-mers
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.tar.gz
158 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
m1a-786o-noq-4h-20180413-ju-2.fastq.gz
80.67 MB
m1a-786o-noq-4h-20180413-ju-2_fastqc.zip
544.65 kB
STAR
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.23 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam
143.42 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
40.44 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
159.59 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bw
25.86 kB
STAR
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.bam.bai
1.94 MB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
3.90 MB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.bam
16.43 MB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.bw
21.21 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_SJ.out.tab
37.61 kB
iCount group
m1A_Ctrl_15min_2Reps_grouped.bed.gz
214.59 kB
m1A_Ctrl_15min_2Reps_grouped.bedgraph
815.51 kB
iCount reads proxy
fastqc
Directory
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.fastq.gz
20.97 MB
stderr.txt
1.58 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
530.72 kB
Paraclu
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.48 kB
iCount RNA-maps
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
325.89 kB
K-mers
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.tar.gz
149 B
Paraclu
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.10 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.60 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
534.67 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.fastq.gz
16.89 MB
iCount summary
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
452 B
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
886 B
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
117.52 kB
Paraclu
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.30 kB
iCount RNA-maps
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
327.67 kB
K-mers
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.tar.gz
151 B
iCount reads proxy
fastqc
Directory
stderr.txt
1.87 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.fastq.gz
18.82 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
533.71 kB
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single.tar.gz
312.84 kB
iCount RNA-maps
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single.tar.gz
307.03 kB
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
321.54 kB
K-mers
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.tar.gz
160 B
iCount reads proxy
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.fastq.gz
12.41 MB
fastqc
Directory
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
539.99 kB
stderr.txt
1.64 kB
iCount summary
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
455 B
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
1013 B
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
94.00 kB
K-mers
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.tar.gz
152 B
Paraclu
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.21 kB
iCount RNA-maps
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
312.18 kB
K-mers
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.tar.gz
151 B
FASTQ file (single-end)
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju-2_fastqc.zip
556.87 kB
m1a-786o-ctrl-15min-20180413-ju-2.fastq.gz
47.62 MB
stderr.txt
1.30 kB
iCount summary
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
87.33 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
886 B
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
454 B
Paraclu
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.26 kB
iCount RNA-maps
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
299.06 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
162.50 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_skipped.bam
3.74 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
40.01 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
35.22 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
122.68 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.81 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_fastqc.zip
534.80 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.fastq.gz
21.35 MB
iCount xlsites
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_skipped.bam
3.31 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
41.18 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
203.37 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
143.39 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
46.58 kB
iCount xlsites
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
35.92 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
179.56 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
40.50 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
124.97 kB
iCount xlsites
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_skipped.bam
3.06 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
141.70 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
32.72 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
29.08 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
100.83 kB
K-mers
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.tar.gz
158 B
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-3min-20180413-ju_fastqc.zip
557.08 kB
stderr.txt
1.23 kB
m1a-786o-noq-3min-20180413-ju.fastq.gz
103.90 MB
iCount xlsites
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
199.49 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
42.01 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
147.05 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
47.21 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_skipped.bam
3.36 kB
iCount xlsites
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
28.82 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
100.14 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
139.78 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
32.29 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.58 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.fastq.gz
26.35 MB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_fastqc.zip
523.97 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
139.60 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single.bed.gz
28.78 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single.bedgraph
98.82 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
32.59 kB
Paraclu
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.17 kB
iCount RNA-maps
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single.tar.gz
316.23 kB
K-mers
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.tar.gz
149 B
iCount xlsites
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single.bedgraph
101.21 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single.bed.gz
29.38 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
33.40 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
144.48 kB
iCount xlsites
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single.bed.gz
34.39 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single.bedgraph
119.25 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
166.31 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
38.95 kB
iCount xlsites
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
379.36 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
94.38 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_skipped.bam
2.90 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
79.59 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
277.86 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.28 kB
igg-786o-mouse-igg-20180413-ju-2.fastq.gz
325.62 MB
igg-786o-mouse-igg-20180413-ju-2_fastqc.zip
503.57 kB
iCount xlsites
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
298.24 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
957.99 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
250.15 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.06 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.14 kB
iCount summary
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
456 B
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
953 B
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
90.64 kB
Paraclu
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.09 kB
K-mers
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped.tar.gz
151 B
iCount summary
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
469 B
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
1.00 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
343.15 kB
Paraclu
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
656 B
iCount xlsites
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
211.95 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1004.90 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_skipped.bam
5.15 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
251.59 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
801.84 kB
iCount xlsites
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.10 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
239.66 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
911.74 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
284.55 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.10 MB
K-mers
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped.tar.gz
192.58 kB
iCount xlsites
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
968.45 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
260.65 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
830.54 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
219.02 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.88 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
501.93 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.fastq.gz
86.44 MB
K-mers
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.tar.gz
269.38 kB
iCount reads proxy
fastqc
Directory
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
492.89 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.fastq.gz
72.83 MB
stderr.txt
1.56 kB
iCount xlsites
m62a-786o-noq-4h-20180413-ju_trimmed_single.bed.gz
79.28 kB
m62a-786o-noq-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-noq-4h-20180413-ju_trimmed_reads_single.bed.gz
92.53 kB
m62a-786o-noq-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
163.12 kB
m62a-786o-noq-4h-20180413-ju_trimmed_single.bedgraph
204 B
iCount summary
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
468 B
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
674.06 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
Paraclu
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.27 kB
iCount RNA-maps
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
453.16 kB
K-mers
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.tar.gz
256.98 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.84 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
294.17 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.20 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
1.09 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
319.88 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
m62a-786o-ctrl-4h-20180413-ju_fastqc.zip
516.64 kB
m62a-786o-ctrl-4h-20180413-ju.fastq.gz
400.41 MB
iCount peaks
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_scores.tsv.gz
448.22 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_peaks.bed.gz
60.27 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_peaks.bedgraph
121.51 kB
iCount reads proxy
fastqc
Directory
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
498.13 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.fastq.gz
87.49 MB
stderr.txt
1.58 kB
iCount xlsites
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
942.10 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_skipped.bam
4.09 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
218.55 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
236.57 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
818.15 kB
iCount summary
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
725.38 kB
Paraclu
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.64 kB
iCount RNA-maps
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
463.80 kB
K-mers
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.tar.gz
263.86 kB
FASTQ file (single-end)
m62a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
327.16 MB
fastqc
Directory
stderr.txt
1.50 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
520.73 kB
iCount RNA-maps
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
493.25 kB
iCount xlsites
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
328.68 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
392.10 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_skipped.bam
5.70 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.25 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.43 MB
iCount reads proxy
fastqc
Directory
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.fastq.gz
74.27 MB
stderr.txt
1.85 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
496.21 kB
iCount summary
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
472 B
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
681.73 kB
iCount xlsites
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_skipped.bam
3.37 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
715.71 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
619.87 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
180.63 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
166.21 kB
Paraclu
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.43 kB
iCount RNA-maps
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
453.17 kB
K-mers
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.tar.gz
264.98 kB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-noq-15min-20180413-ju.fastq.gz
462.69 MB
stderr.txt
1.26 kB
m62a-786o-noq-15min-20180413-ju_fastqc.zip
519.80 kB
iCount reads proxy
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped.fastq.gz
104.01 MB
fastqc
Directory
stderr.txt
1.62 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
499.04 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
260.39 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.06 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_skipped.bam
4.49 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
284.38 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
986.97 kB
iCount summary
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
476 B
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
814.14 kB
Paraclu
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.91 kB
K-mers
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped.tar.gz
280.98 kB
iCount reads proxy
fastqc
Directory
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.fastq.gz
121.53 MB
stderr.txt
1.64 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
486.19 kB
iCount summary
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
841.14 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
473 B
iCount xlsites
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
342.13 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
371.91 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_skipped.bam
4.74 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.40 MB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
1.28 MB
Paraclu
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
3.42 kB
iCount RNA-maps
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
400.46 kB
FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz
289.08 MB
fastqc
Directory
stderr.txt
1.42 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_fastqc.zip
555.32 kB
iCount reads proxy
fastqc
Directory
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.fastq.gz
69.20 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
510.63 kB
stderr.txt
1.77 kB
Paraclu
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
10.09 kB
iCount xlsites
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.26 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
310.60 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_skipped.bam
4.57 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.16 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
339.49 kB
iCount summary
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
467 B
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
747.22 kB
Paraclu
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
7.89 kB
iCount xlsites
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.77 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
780.27 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
953.33 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
2.28 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
3.26 MB
iCount reads proxy
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.fastq.gz
51.29 MB
fastqc
Directory
stderr.txt
1.62 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
518.41 kB
iCount xlsites
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
507.33 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.25 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
1.68 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
417.39 kB
iCount xlsites
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.44 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.33 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_skipped.bam
3.40 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
450.05 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
369.53 kB
iCount summary
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
467 B
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
595.30 kB
iCount xlsites
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.34 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
811.69 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
3.41 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
2.40 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
993.21 kB
iCount summary
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
457 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
955 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
130.81 kB
iCount summary
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
455 B
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
87.34 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
953 B
iCount summary
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
458 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
1018 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
117.51 kB
iCount summary
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
951 B
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
457 B
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
104.95 kB
iCount reads proxy
fastqc
Directory
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.fastq.gz
96.71 MB
stderr.txt
1.56 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
516.32 kB
iCount xlsites
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_skipped.bam
3.88 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.29 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.35 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
425.08 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
347.95 kB
iCount summary
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
457 B
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
131.89 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
958 B
iCount summary
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
471 B
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
803.33 kB
iCount RNA-maps
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
424.54 kB
K-mers
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.tar.gz
220.40 kB
FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
273.23 MB
fastqc
Directory
stderr.txt
1.55 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
554.05 kB
iCount reads proxy
fastqc
Directory
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.fastq.gz
67.81 MB
stderr.txt
1.83 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
519.15 kB
iCount summary
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
671.36 kB
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
423.16 kB
Paraclu
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
9.00 kB
K-mers
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.tar.gz
150.62 kB
iCount reads proxy
stderr.txt
1.60 kB
fastqc
Directory
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.fastq.gz
89.13 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
513.19 kB
iCount xlsites
m1a-786o-noq-15min-20180413-ju_trimmed_single.bed.gz
91.36 kB
m1a-786o-noq-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
172.80 kB
m1a-786o-noq-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-15min-20180413-ju_trimmed_reads_single.bed.gz
98.89 kB
m1a-786o-noq-15min-20180413-ju_trimmed_single.bedgraph
208 B
iCount RNA-maps
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
434.43 kB
K-mers
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.tar.gz
218.05 kB
FASTQ file (single-end)
m1a-786o-ctrl-15min-20180413-ju.fastq.gz
151.63 MB
stderr.txt
1.26 kB
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju_fastqc.zip
556.53 kB
iCount summary
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
463 B
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
485.61 kB
iCount RNA-maps
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
385.26 kB
Paraclu
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
6.15 kB
K-mers
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.tar.gz
142.80 kB
iCount reads proxy
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.fastq.gz
125.42 MB
stderr.txt
1.75 kB
fastqc
Directory
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
497.86 kB
iCount summary
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
1.13 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
475 B
Paraclu
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
5.78 kB
iCount RNA-maps
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
718.72 kB
K-mers
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.tar.gz
320.73 kB
FASTQ file (single-end)
m6a-786o-noq-4h-20180413-ju.fastq.gz
447.15 MB
stderr.txt
1.19 kB
fastqc
Directory
m6a-786o-noq-4h-20180413-ju_fastqc.zip
509.90 kB
iCount reads proxy
fastqc
Directory
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
477.64 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.fastq.gz
138.77 MB
stderr.txt
1.54 kB
Paraclu
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
6.28 kB
iCount RNA-maps
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
722.01 kB
K-mers
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.tar.gz
327.99 kB
K-mers
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.tar.gz
146.25 kB
iCount summary
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
469 B
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
928.90 kB
Paraclu
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.51 kB
iCount RNA-maps
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
589.19 kB
K-mers
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.tar.gz
289.38 kB
iCount reads proxy
fastqc
Directory
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.fastq.gz
114.17 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
469.82 kB
stderr.txt
1.83 kB
K-mers
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.tar.gz
305.61 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.25 kB
m6a-786o-noq-15min-20180413-ju_fastqc.zip
516.45 kB
m6a-786o-noq-15min-20180413-ju.fastq.gz
375.26 MB
iCount summary
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
874.67 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
471 B
Paraclu
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.93 kB
iCount RNA-maps
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
547.40 kB
K-mers
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.tar.gz
293.08 kB
iCount reads proxy
fastqc
Directory
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
481.26 kB
stderr.txt
1.62 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.fastq.gz
101.35 MB
iCount xlsites
m6a-786o-ctrl-15min-20180413-ju_trimmed_reads_single.bed.gz
80.53 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed_single.bedgraph
210 B
m6a-786o-ctrl-15min-20180413-ju_trimmed_single.bed.gz
68.44 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
141.02 kB
iCount xlsites
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.21 MB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
331.21 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
403.89 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.29 MB
iCount summary
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
860.86 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
469 B
Paraclu
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.83 kB
iCount RNA-maps
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
543.30 kB
K-mers
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.tar.gz
290.51 kB
iCount reads proxy
fastqc
Directory
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.fastq.gz
5.39 MB
stderr.txt
1.60 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_fastqc.zip
502.12 kB
iCount RNA-maps
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single.tar.gz
405.92 kB
iCount xlsites
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_skipped.bam
3.21 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single.bed.gz
111.32 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
407.98 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single.bedgraph
416.17 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
125.36 kB
iCount summary
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1014 B
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
462 B
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
454.75 kB
Paraclu
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
914 B
iCount RNA-maps
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single.tar.gz
435.50 kB
K-mers
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.tar.gz
150 B
K-mers
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.tar.gz
151 B
FASTQ file (single-end)
fastqc
Directory
igg-786o-rabbit-igg-20180413-ju.fastq.gz
43.14 MB
stderr.txt
1.33 kB
igg-786o-rabbit-igg-20180413-ju_fastqc.zip
539.35 kB
iCount xlsites
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single.bed.gz
76.46 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
316.11 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single.bedgraph
274.81 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
88.84 kB
iCount summary
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
460 B
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
353.19 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1010 B
Paraclu
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
636 B
iCount xlsites
demux_NNNNCCGGANNN_multi.bed.gz
1.45 MB
demux_NNNNCCGGANNN_skipped.bam
1.38 MB
demux_NNNNCCGGANNN_unique.bed.gz
226.33 kB
demux_NNNNCCGGANNN_unique.bedgraph
844.75 kB
iCount xlsites
m6a_ctrl_3_20180106_ju-2_unmapped_skipped.bam
3.63 kB
m6a_ctrl_3_20180106_ju-2_unmapped_single.bedgraph
228.45 kB
m6a_ctrl_3_20180106_ju-2_unmapped_single.bed.gz
64.56 kB
m6a_ctrl_3_20180106_ju-2_unmapped_singleAndMulti.bed.gz
339.11 kB
m6a_ctrl_3_20180106_ju-2_unmapped_reads_single.bed.gz
68.58 kB
iCount annotate
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_annotated.bedgraph
1.46 MB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_annotated.bed.gz
555.44 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAGTTANNN.fastq.gz
304.22 MB
stderr.txt
975 B
demux_NNNNAGTTANNN_fastqc.zip
457.05 kB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed.fastq.gz
65.20 MB
report.txt
677 B
Cutadapt (single-end)
report.txt
665 B
fastqc
Directory
m1a-786o-noq-4h-20180413-ju-2_trimmed.fastq.gz
78.72 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
m1a-786o-ctrl-4h-20180413-ju-2_trimmed.fastq.gz
65.84 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
680 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed.fastq.gz
72.93 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
m1a-786o-noq-15min-20180413-ju-2_trimmed.fastq.gz
50.51 MB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju-2_trimmed.fastq.gz
46.21 MB
report.txt
669 B
Cutadapt (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed.fastq.gz
84.89 MB
report.txt
677 B
Cutadapt (single-end)
report.txt
666 B
fastqc
Directory
m1a-786o-noq-3min-20180413-ju_trimmed.fastq.gz
101.34 MB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-ctrl-3min-20180413-ju_trimmed.fastq.gz
80.77 MB
report.txt
666 B
Cutadapt (single-end)
report.txt
668 B
fastqc
Directory
igg-786o-mouse-igg-20180413-ju-2_trimmed.fastq.gz
315.85 MB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.fastq.gz
366.71 MB
report.txt
677 B
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
m62a-786o-ctrl-4h-20180413-ju_trimmed.fastq.gz
384.66 MB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-noq-15min-20180413-ju_trimmed.fastq.gz
452.83 MB
report.txt
667 B
Cutadapt (single-end)
fastqc
Directory
report.txt
679 B
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.fastq.gz
318.35 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.fastq.gz
282.61 MB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-noq-4h-20180413-ju_trimmed.fastq.gz
197.57 MB
report.txt
664 B
Cutadapt (single-end)
fastqc
Directory
m1a-786o-ctrl-4h-20180413-ju_trimmed.fastq.gz
368.03 MB
report.txt
665 B
Cutadapt (single-end)
fastqc
Directory
report.txt
679 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.fastq.gz
267.46 MB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju_trimmed.fastq.gz
148.16 MB
report.txt
668 B
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
m6a-786o-ctrl-4h-20180413-ju_trimmed.fastq.gz
238.65 MB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.fastq.gz
386.32 MB
report.txt
678 B
Cutadapt (single-end)
m6a-786o-ctrl-15min-20180413-ju_trimmed.fastq.gz
339.97 MB
fastqc
Directory
report.txt
668 B
Cutadapt (single-end)
report.txt
668 B
fastqc
Directory
m6a-786o-noq-15min-20180413-ju_trimmed.fastq.gz
355.57 MB
Cutadapt (single-end)
fastqc
Directory
igg-786o-mouse-igg-20180413-ju_trimmed.fastq.gz
22.57 MB
report.txt
665 B
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
igg-786o-rabbit-igg-20180413-ju_trimmed.fastq.gz
41.80 MB
Reads (single-end)
demux_NNNNGTAGANNN.fastq.gz
428.44 MB
stderr.txt
975 B
fastqc
Directory
demux_NNNNGTAGANNN_fastqc.zip
461.25 kB
iCount reads proxy
m6A_786O_Ctrl3'_20180106_JU_unmapped.fastq.gz
16.07 MB
fastqc
Directory
m6A_786O_Ctrl3'_20180106_JU_unmapped_fastqc.zip
480.65 kB
stderr.txt
1.36 kB
iCount summary
demux_NNNNAGGCANNN_trimmed_single_summary.tsv_summary_gene.tsv
469.97 kB
demux_NNNNAGGCANNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
demux_NNNNAGGCANNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
iCount summary
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_gene.tsv
826.39 kB
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_subtype.tsv
637 B
iCount clusters
Input_Control 4hrs_20180223_JU_1Rep_grouped_clustered.bedgraph
38.94 kB
Input_Control 4hrs_20180223_JU_1Rep_grouped_clustered.bed.gz
27.85 kB
iCount xlsites
demux_NNNNTCGAGNNN_skipped.bam
8.31 MB
demux_NNNNTCGAGNNN_unique.bed.gz
1.01 MB
demux_NNNNTCGAGNNN_unique.bedgraph
4.20 MB
demux_NNNNTCGAGNNN_multi.bed.gz
3.82 MB
iCount xlsites
demux_NNNNCCTGCNNN_skipped.bam
3.51 MB
demux_NNNNCCTGCNNN_multi.bed.gz
2.82 MB
demux_NNNNCCTGCNNN_unique.bed.gz
761.46 kB
demux_NNNNCCTGCNNN_unique.bedgraph
3.06 MB
STAR
demux_NNNNGTTTCNNN_unmapped.out.mate1.fastq.gz
104.83 MB
demux_NNNNGTTTCNNN_stats.txt
1.81 kB
demux_NNNNGTTTCNNN.bam
2.68 GB
demux_NNNNGTTTCNNN_SJ.out.tab
458.76 kB
demux_NNNNGTTTCNNN.bam.bai
5.03 MB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNCAGGGNNN_fastqc.zip
536.27 kB
demux_NNNNCAGGGNNN.fastq.gz
390.04 MB
iCount xlsites
demux_NNNNTCGAGATTNNNNN_skipped.bam
452.95 kB
demux_NNNNTCGAGATTNNNNN_unique.bed.gz
370.93 kB
demux_NNNNTCGAGATTNNNNN_multi.bed.gz
2.45 MB
demux_NNNNTCGAGATTNNNNN_unique.bedgraph
1.39 MB
STAR
demux_NNNNTCGAGGTCNNNNN_unmapped.out.mate1.fastq.gz
9.91 MB
demux_NNNNTCGAGGTCNNNNN.bam.bai
4.02 MB
demux_NNNNTCGAGGTCNNNNN.bam
323.31 MB
demux_NNNNTCGAGGTCNNNNN_stats.txt
1.80 kB
demux_NNNNTCGAGGTCNNNNN_SJ.out.tab
187.27 kB
STAR
demux_NNNNCACAGNNN.bam.bai
4.90 MB
demux_NNNNCACAGNNN_unmapped.out.mate1.fastq.gz
121.43 MB
demux_NNNNCACAGNNN_stats.txt
1.81 kB
demux_NNNNCACAGNNN.bam
2.83 GB
demux_NNNNCACAGNNN_SJ.out.tab
353.74 kB
iCount clusters
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_clustered.bed.gz
48.12 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_clustered.bedgraph
74.63 kB
iCount clusters
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_clustered.bed.gz
50.08 kB
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_clustered.bedgraph
78.13 kB
iCount group
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped.bed.gz
321.00 kB
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped.bedgraph
1.22 MB
STAR
demux_NNNNAGTCCNNN.bam.bai
4.70 MB
demux_NNNNAGTCCNNN.bam
1.94 GB
demux_NNNNAGTCCNNN_stats.txt
1.81 kB
demux_NNNNAGTCCNNN_SJ.out.tab
528.80 kB
demux_NNNNAGTCCNNN_unmapped.out.mate1.fastq.gz
72.14 MB
STAR
m6A_786O_NoQ4H_20180106_JU_unmapped.bam.bai
3.43 MB
m6A_786O_NoQ4H_20180106_JU_unmapped.bam
93.81 MB
m6A_786O_NoQ4H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
12.24 MB
m6A_786O_NoQ4H_20180106_JU_unmapped_stats.txt
1.81 kB
m6A_786O_NoQ4H_20180106_JU_unmapped_SJ.out.tab
838.83 kB
m6A_786O_NoQ4H_20180106_JU_unmapped.bw
37.61 kB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNATACGNNN.fastq.gz
11.65 MB
demux_NNNNATACGNNN_fastqc.zip
445.32 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNTCGAGGTCNNNNN.fastq.gz
38.84 MB
demux_NNNNTCGAGGTCNNNNN_fastqc.zip
395.71 kB
STAR
demux_NNNNCCTGCNNN_unmapped.out.mate1.fastq.gz
60.63 MB
demux_NNNNCCTGCNNN.bam.bai
4.05 MB
demux_NNNNCCTGCNNN_SJ.out.tab
284.67 kB
demux_NNNNCCTGCNNN_stats.txt
1.81 kB
demux_NNNNCCTGCNNN.bam
1.43 GB
iCount group
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped.bed.gz
2.52 MB
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped.bedgraph
11.85 MB
iCount group
m6A_786O__Ctrl_7Reps_grouped.bed.gz
4.68 MB
m6A_786O__Ctrl_7Reps_grouped.bedgraph
22.11 MB
iCount group
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped.bed.gz
308.86 kB
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped.bedgraph
1.18 MB
iCount group
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped.bedgraph
1.43 MB
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped.bed.gz
368.85 kB
iCount xlsites
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_skipped.bam
3.82 kB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_singleAndMulti.bed.gz
470.21 kB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single.bed.gz
112.07 kB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_reads_single.bed.gz
119.62 kB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single.bedgraph
400.57 kB
iCount xlsites
demux_NNNNTCATCNNN_unique.bed.gz
1.15 MB
demux_NNNNTCATCNNN_skipped.bam
5.67 MB
demux_NNNNTCATCNNN_multi.bed.gz
4.22 MB
demux_NNNNTCATCNNN_unique.bedgraph
4.82 MB
iCount clusters
Input_Control 24hrs_20180223_JU_1Rep_grouped_clustered.bed.gz
31.30 kB
Input_Control 24hrs_20180223_JU_1Rep_grouped_clustered.bedgraph
44.50 kB
iCount xlsites
demux_NNNNGTAACNNN_skipped.bam
8.33 MB
demux_NNNNGTAACNNN_unique.bed.gz
2.53 MB
demux_NNNNGTAACNNN_unique.bedgraph
11.53 MB
demux_NNNNGTAACNNN_multi.bed.gz
7.03 MB
iCount group
IgG_786O__20180420_JU_IgG_grouped.bedgraph
457.36 kB
IgG_786O__20180420_JU_IgG_grouped.bed.gz
124.81 kB
iCount summary
demux_NNNNCCGGANNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_gene.tsv
355.28 kB
demux_NNNNCCGGANNN_unique_summary.tsv_summary_type.tsv
263 B
iCount peaks
demux_NNNNAACTCNNN_unique_peaks.bed.gz
106.97 kB
demux_NNNNAACTCNNN_unique_scores.tsv.gz
898.48 kB
demux_NNNNAACTCNNN_unique_peaks.bedgraph
245.55 kB
iCount annotate
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_annotated.bed.gz
577.45 kB
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_annotated.bedgraph
1.55 MB
iCount annotate
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_annotated.bed.gz
381.65 kB
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_annotated.bedgraph
1008.60 kB
Paraclu
peaks.bed.gz
843 B
Paraclu
peaks.bed.gz
2.40 kB
Paraclu
peaks.bed.gz
743 B
iCount annotate
m6A_NoQ+DM-Akg_15min_2reps_grouped_annotated.bed.gz
670.57 kB
m6A_NoQ+DM-Akg_15min_2reps_grouped_annotated.bedgraph
1.78 MB
iCount summary
demux_NNNNGTAACNNN_unique_summary.tsv_summary_type.tsv
272 B
demux_NNNNGTAACNNN_unique_summary.tsv_summary_subtype.tsv
656 B
demux_NNNNGTAACNNN_unique_summary.tsv_summary_gene.tsv
1.11 MB
iCount annotate
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_annotated.bedgraph
6.68 MB
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_annotated.bed.gz
2.05 MB
Paraclu
peaks.bed.gz
35 B
iCount summary
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_gene.tsv
572.51 kB
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
iCount reads proxy
fastqc
Directory
m62a_786o_noq-4h_20180413_ju_unmapped.fastq.gz
42.14 MB
m62a_786o_noq-4h_20180413_ju_unmapped_fastqc.zip
530.00 kB
stderr.txt
1.38 kB
iCount group
m1A_786O_NoQ 4H_2Reps_grouped.bed.gz
272.33 kB
m1A_786O_NoQ 4H_2Reps_grouped.bedgraph
1.02 MB
iCount annotate
Input_786O_Control-(completeDMEM)_6Reps_grouped_annotated.bed.gz
1.79 MB
Input_786O_Control-(completeDMEM)_6Reps_grouped_annotated.bedgraph
5.28 MB
iCount clusters
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_clustered.bed.gz
43.67 kB
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_clustered.bedgraph
62.88 kB
iCount summary
m1A_786O__20180420_JU_1Rep_grouped_summary.tsv_summary_type.tsv
268 B
m1A_786O__20180420_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
645 B
m1A_786O__20180420_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
803.19 kB
iCount RNA-maps
results.tar.gz
639.42 kB
iCount reads proxy
fastqc
Directory
igg-786o-20180420-jufastqgz_unmapped.fastq.gz
9.68 MB
igg-786o-20180420-jufastqgz_unmapped_fastqc.zip
533.55 kB
stderr.txt
1.36 kB
iCount xlsites
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
54.60 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
93.55 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
268 B
iCount clusters
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_clustered.bed.gz
74.10 kB
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_clustered.bedgraph
125.62 kB
iCount clusters
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_clustered.bed.gz
48.54 kB
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_clustered.bedgraph
70.45 kB
iCount summary
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
267 B
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
431.81 kB
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
645 B
STAR
demux_NNNNCTGATNNN_unmapped.out.mate1.fastq.gz
49.50 MB
demux_NNNNCTGATNNN.bam.bai
1.90 MB
demux_NNNNCTGATNNN.bam
371.98 MB
demux_NNNNCTGATNNN_stats.txt
1.81 kB
demux_NNNNCTGATNNN_SJ.out.tab
22.39 kB
iCount group
m6A_NoQ_4hrs_2Reps_grouped.bedgraph
15.96 MB
m6A_NoQ_4hrs_2Reps_grouped.bed.gz
3.40 MB
iCount group
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped.bed.gz
347.36 kB
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped.bedgraph
1.32 MB
iCount group
test_m6A_786O_NoQ4hrs_2reps_grouped.bed.gz
3.40 MB
test_m6A_786O_NoQ4hrs_2reps_grouped.bedgraph
15.96 MB
iCount xlsites
demux_NNNNTATGANNN_skipped.bam
5.99 MB
demux_NNNNTATGANNN_multi.bed.gz
1.73 MB
demux_NNNNTATGANNN_unique.bed.gz
329.66 kB
demux_NNNNTATGANNN_unique.bedgraph
1.24 MB
iCount clusters
m1A_NoQ_15min_2Reps_grouped_clustered.bed.gz
48.46 kB
m1A_NoQ_15min_2Reps_grouped_clustered.bedgraph
69.86 kB
iCount xlsites
m1a-786o-wtvhl-20180420-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-wtvhl-20180420-ju_trimmed_single.bed.gz
97.85 kB
m1a-786o-wtvhl-20180420-ju_trimmed_single.bedgraph
202 B
m1a-786o-wtvhl-20180420-ju_trimmed_singleAndMulti.bed.gz
166.09 kB
iCount clusters
m1A_786O_10Reps_grouped_clustered.bed.gz
156.19 kB
m1A_786O_10Reps_grouped_clustered.bedgraph
258.40 kB
iCount group
m1A_786O__20180420_JU_1Rep_grouped.bed.gz
682.02 kB
m1A_786O__20180420_JU_1Rep_grouped.bedgraph
2.68 MB
iCount xlsites
demux_NNNNAGTTANNN_skipped.bam
605.18 kB
demux_NNNNAGTTANNN_multi.bed.gz
368.90 kB
demux_NNNNAGTTANNN_unique.bed.gz
32.61 kB
iCount xlsites
demux_NNNNGTAGANNN_unique.bed.gz
402.85 kB
demux_NNNNGTAGANNN_skipped.bam
14.86 MB
demux_NNNNGTAGANNN_multi.bed.gz
2.01 MB
demux_NNNNGTAGANNN_unique.bedgraph
1.54 MB
iCount summary
demux_NNNNTCACANNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNTCACANNN_unique_summary.tsv_summary_gene.tsv
535.83 kB
demux_NNNNTCACANNN_unique_summary.tsv_summary_type.tsv
265 B
iCount peaks
demux_NNNNTCACANNN_unique_scores.tsv.gz
354.89 kB
demux_NNNNTCACANNN_unique_peaks.bed.gz
48.44 kB
demux_NNNNTCACANNN_unique_peaks.bedgraph
101.72 kB
iCount xlsites
demux_NNNNGAATANNN_unique.bed.gz
406.21 kB
demux_NNNNGAATANNN_skipped.bam
1.21 MB
demux_NNNNGAATANNN_multi.bed.gz
2.34 MB
demux_NNNNGAATANNN_unique.bedgraph
1.55 MB
iCount group
m6A_NoQ_15min_20180106_JU_1Rep_grouped.bed.gz
40.68 kB
m6A_NoQ_15min_20180106_JU_1Rep_grouped.bedgraph
146.47 kB
iCount annotate
m1A_786O_10Reps_grouped_annotated.bedgraph
6.23 MB
m1A_786O_10Reps_grouped_annotated.bed.gz
2.06 MB
iCount summary
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_subtype.tsv
651 B
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_type.tsv
269 B
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_gene.tsv
841.01 kB
iCount summary
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
268 B
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
589.06 kB
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
648 B
iCount summary
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
265 B
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
640.86 kB
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
638 B
iCount reads proxy
fastqc
Directory
m6a-786o-20180420-jufastqgz_unmapped_fastqc.zip
469.69 kB
m6a-786o-20180420-jufastqgz_unmapped.fastq.gz
119.24 MB
stderr.txt
1.36 kB
iCount group
m6A_786O_NoQ_15min_grouped.bedgraph
1.67 MB
m6A_786O_NoQ_15min_grouped.bed.gz
427.28 kB
iCount group
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped.bed.gz
852.81 kB
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped.bedgraph
3.58 MB
iCount summary
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_gene.tsv
616.69 kB
iCount group
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped.bed.gz
374.03 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped.bedgraph
1.46 MB
iCount RNA-maps
results.tar.gz
312.67 kB
iCount group
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped.bed.gz
401.74 kB
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped.bedgraph
1.58 MB
iCount reads proxy
fastqc
Directory
m1a-786o-20180420-jufastqgz_unmapped.fastq.gz
96.98 MB
stderr.txt
1.36 kB
m1a-786o-20180420-jufastqgz_unmapped_fastqc.zip
508.10 kB
iCount summary
demux_NNNNATCCANNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_gene.tsv
655.77 kB
demux_NNNNATCCANNN_unique_summary.tsv_summary_type.tsv
260 B
Reads (single-end)
demux_NNNNATCCANNN.fastq.gz
264.75 MB
stderr.txt
975 B
fastqc
Directory
demux_NNNNATCCANNN_fastqc.zip
452.57 kB
demux_NNNNATCCANNN.fastq.gz
264.75 MB
stderr.txt
975 B
fastqc
Directory
demux_NNNNATCCANNN_fastqc.zip
452.57 kB
STAR
demux_NNNNAGTCCNNN_stats.txt
1.81 kB
demux_NNNNAGTCCNNN_unmapped.out.mate1.fastq.gz
20.01 MB
demux_NNNNAGTCCNNN.bam.bai
4.57 MB
demux_NNNNAGTCCNNN_SJ.out.tab
1.11 MB
demux_NNNNAGTCCNNN.bam
1.09 GB
STAR
demux_NNNNCCTGCNNN.bam
1.08 GB
demux_NNNNCCTGCNNN_SJ.out.tab
1.02 MB
demux_NNNNCCTGCNNN_stats.txt
1.80 kB
demux_NNNNCCTGCNNN.bam.bai
4.42 MB
demux_NNNNCCTGCNNN_unmapped.out.mate1.fastq.gz
17.10 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCATACNNN_fastqc.zip
473.18 kB
demux_NNNNCATACNNN.fastq.gz
345.97 MB
stderr.txt
975 B
Reads (single-end)
fastqc
Directory
demux_NNNNATACGNNN_fastqc.zip
455.96 kB
demux_NNNNATACGNNN.fastq.gz
82.90 MB
stderr.txt
975 B
iCount reads proxy
fastqc
Directory
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
2.98 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
519.33 kB
stderr.txt
2.12 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGAATANNN.fastq.gz
62.85 MB
demux_NNNNGAATANNN_fastqc.zip
475.66 kB
STAR
demux_NNNNGCTTGCTGNNNNN_unmapped.out.mate1.fastq.gz
5.81 MB
demux_NNNNGCTTGCTGNNNNN.bam
106.90 MB
demux_NNNNGCTTGCTGNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGCTGNNNNN_SJ.out.tab
48.25 kB
demux_NNNNGCTTGCTGNNNNN.bam.bai
2.62 MB
Reads (single-end)
fastqc
Directory
demux_NNNNTCACANNN.fastq.gz
325.39 MB
stderr.txt
975 B
demux_NNNNTCACANNN_fastqc.zip
462.28 kB
STAR
demux_NNNNGCTTGATTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGATTNNNNN_unmapped.out.mate1.fastq.gz
18.34 MB
demux_NNNNGCTTGATTNNNNN.bam.bai
2.91 MB
demux_NNNNGCTTGATTNNNNN.bam
186.17 MB
demux_NNNNGCTTGATTNNNNN_SJ.out.tab
65.58 kB
STAR
demux_NNNNTGTGGNNN.bam.bai
1.81 MB
demux_NNNNTGTGGNNN.bam
203.19 MB
demux_NNNNTGTGGNNN_unmapped.out.mate1.fastq.gz
22.12 MB
demux_NNNNTGTGGNNN_stats.txt
1.81 kB
demux_NNNNTGTGGNNN_SJ.out.tab
15.77 kB
STAR
demux_NNNNAGTTANNN.bam
1.53 GB
demux_NNNNAGTTANNN.bam.bai
3.35 MB
demux_NNNNAGTTANNN_unmapped.out.mate1.fastq.gz
157.85 MB
demux_NNNNAGTTANNN_stats.txt
1.81 kB
demux_NNNNAGTTANNN_SJ.out.tab
206.54 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCTGATNNN_fastqc.zip
459.90 kB
demux_NNNNCTGATNNN.fastq.gz
105.20 MB
stderr.txt
975 B
iCount summary
demux_NNNNATCCANNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_gene.tsv
610.39 kB
STAR
demux_NNNNATCCANNN_unmapped.out.mate1.fastq.gz
142.53 MB
demux_NNNNATCCANNN.bam.bai
4.16 MB
demux_NNNNATCCANNN.bam
2.81 GB
demux_NNNNATCCANNN_stats.txt
1.81 kB
demux_NNNNATCCANNN_SJ.out.tab
202.93 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCCTGCNNN_fastqc.zip
458.73 kB
stderr.txt
975 B
demux_NNNNCCTGCNNN.fastq.gz
240.69 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGTAGANNN.fastq.gz
506.43 MB
stderr.txt
975 B
demux_NNNNGTAGANNN_fastqc.zip
426.37 kB
Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNATCTGTGCNNNNN_fastqc.zip
399.17 kB
demux_NNNNATCTGTGCNNNNN.fastq.gz
24.06 MB
Reads (single-end)
fastqc
Directory
demux_NNNNTCACANNN.fastq.gz
41.02 MB
demux_NNNNTCACANNN_fastqc.zip
491.08 kB
stderr.txt
975 B
iCount annotate
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_annotated.bed.gz
1.21 MB
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_annotated.bedgraph
3.58 MB
iCount xlsites
demux_NNNNACCTTNNN_unique.bed.gz
270.61 kB
demux_NNNNACCTTNNN_multi.bed.gz
1.79 MB
demux_NNNNACCTTNNN_unique.bedgraph
1.00 MB
demux_NNNNACCTTNNN_skipped.bam
640.71 kB
STAR
demux_NNNNCCGGANNN.bam.bai
3.04 MB
demux_NNNNCCGGANNN_stats.txt
1.81 kB
demux_NNNNCCGGANNN.bam
662.73 MB
demux_NNNNCCGGANNN_SJ.out.tab
81.53 kB
demux_NNNNCCGGANNN_unmapped.out.mate1.fastq.gz
42.49 MB
iCount xlsites
demux_NNNNCATTTNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCATTTNNN_trimmed_single.bed.gz
209.77 kB
demux_NNNNCATTTNNN_trimmed_single.bedgraph
788.49 kB
demux_NNNNCATTTNNN_trimmed_singleAndMulti.bed.gz
1.45 MB
Reads (single-end)
fastqc
Directory
stderr.txt
1.00 kB
demux_NNNNCCGGANNN_fastqc.zip
452.96 kB
demux_NNNNCCGGANNN.fastq.gz
113.02 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGAATANNN.fastq.gz
62.54 MB
stderr.txt
975 B
demux_NNNNGAATANNN_fastqc.zip
516.08 kB
STAR
demux_NNNNAGGCANNN_trimmed_unmapped.out.mate1.fastq.gz
31.08 MB
demux_NNNNAGGCANNN_trimmed_stats.txt
1.81 kB
demux_NNNNAGGCANNN_trimmed.bam.bai
3.06 MB
demux_NNNNAGGCANNN_trimmed.bam
590.29 MB
demux_NNNNAGGCANNN_trimmed_SJ.out.tab
81.58 kB
STAR
demux_NNNNGCTTGTGCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
6.68 MB
demux_NNNNGCTTGTGCNNNNN_trimmed.bam
126.45 MB
demux_NNNNGCTTGTGCNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGTGCNNNNN_trimmed_SJ.out.tab
46.46 kB
demux_NNNNGCTTGTGCNNNNN_trimmed.bam.bai
2.63 MB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATCTGTGCNNNNN.fastq.gz
24.17 MB
demux_NNNNATCTGTGCNNNNN_fastqc.zip
404.48 kB
iCount xlsites
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_single.bed.gz
80.38 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_single.bedgraph
197 B
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_singleAndMulti.bed.gz
123.50 kB
Reads (single-end)
stderr.txt
1.25 kB
fastqc
Directory
m6a-786o-noq-dm-akg-3-20180106-ju.fastq.gz
79.44 MB
m6a-786o-noq-dm-akg-3-20180106-ju_fastqc.zip
447.24 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNAGTTANNN_trimmed.fastq.gz
294.85 MB
demux_NNNNAGTTANNN_trimmed_fastqc.zip
429.46 kB
report.txt
670 B
STAR
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed.bw
106.54 kB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed.bam
175.77 MB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
32.48 MB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed.bam.bai
20.56 kB
Reads (single-end)
m6a-786o-ctrl-3-20180106-ju.fastq.gz
57.47 MB
fastqc
Directory
stderr.txt
1.19 kB
m6a-786o-ctrl-3-20180106-ju_fastqc.zip
506.98 kB
iCount xlsites
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
1.74 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
460.81 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
500.32 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
1.79 MB
iCount reads proxy
fastqc
Directory
stderr.txt
1.48 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_fastqc.zip
527.51 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.fastq.gz
26.03 MB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
1.38 kB
iCount xlsites
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bed.gz
105.09 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
494.61 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_reads_single.bed.gz
115.70 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bedgraph
377.01 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_skipped.bam
3.71 kB
iCount xlsites
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
6.87 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
1.99 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
2.31 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
9.06 MB
Paraclu
peaks.bed.gz
391 B
Paraclu
peaks.bed.gz
548 B
STAR
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
5.75 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
23.61 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
2.36 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
29.15 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
18.71 kB
Cutadapt (single-end)
fastqc
Directory
igg-786o-20180420-ju_trimmed.fastq.gz
38.73 MB
igg-786o-20180420-ju_trimmed_fastqc.zip
490.44 kB
report.txt
688 B
iCount xlsites
demux_NNNNATCTGTGCNNNNN_multi.bed.gz
1.19 MB
demux_NNNNATCTGTGCNNNNN_skipped.bam
571.45 kB
demux_NNNNATCTGTGCNNNNN_unique.bed.gz
152.19 kB
demux_NNNNATCTGTGCNNNNN_unique.bedgraph
555.22 kB
iCount RNA-maps
results.tar.gz
276.98 kB
iCount summary
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_gene.tsv
395.12 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_type.tsv
440 B
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
1006 B
iCount annotate
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_annotated.bedgraph
1.55 MB
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_annotated.bed.gz
589.14 kB
iCount RNA-maps
results.tar.gz
371.35 kB
Paraclu
peaks.bed.gz
99 B
iCount group
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped.bed.gz
402.87 kB
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped.bedgraph
1.55 MB
STAR
m6a_ctrl_4h_20180106_ju-2_unmapped.bam
39.00 MB
m6a_ctrl_4h_20180106_ju-2_unmapped_SJ.out.tab
143.57 kB
m6a_ctrl_4h_20180106_ju-2_unmapped_stats.txt
1.80 kB
m6a_ctrl_4h_20180106_ju-2_unmapped.bam.bai
1.94 MB
m6a_ctrl_4h_20180106_ju-2_unmapped.bw
24.87 kB
m6a_ctrl_4h_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
8.92 MB
iCount summary
m6A_786O_Ctrl24H_20180106_JU_unmapped_single_summary_type.tsv
266 B
m6A_786O_Ctrl24H_20180106_JU_unmapped_single_summary_gene.tsv
807.69 kB
m6A_786O_Ctrl24H_20180106_JU_unmapped_single_summary_subtype.tsv
642 B
iCount summary
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single_summary_gene.tsv
171.13 kB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single_summary_type.tsv
454 B
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single_summary_subtype.tsv
946 B
iCount summary
demux_NNNNGTAACNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNGTAACNNN_unique_summary.tsv_summary_gene.tsv
487.18 kB
demux_NNNNGTAACNNN_unique_summary.tsv_summary_subtype.tsv
647 B
STAR
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_stats.txt
1.80 kB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped.bam
40.36 MB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
9.86 MB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_SJ.out.tab
152.00 kB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped.bam.bai
2.02 MB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped.bw
25.30 kB
iCount peaks
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_peaks.bed.gz
55.56 kB
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_peaks.bedgraph
122.39 kB
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_scores.tsv.gz
300.26 kB
iCount summary
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
267 B
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
636 B
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
570.64 kB
FASTQ file (single-end)
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju.fastq.gz
50.71 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_fastqc.zip
556.73 kB
fastqc
Directory
stderr.txt
1.77 kB
iCount xlsites
demux_NNNNTCACANNN_unique.bed.gz
291.17 kB
demux_NNNNTCACANNN_skipped.bam
754.98 kB
demux_NNNNTCACANNN_unique.bedgraph
1.11 MB
demux_NNNNTCACANNN_multi.bed.gz
1.33 MB
iCount clusters
m6A_NoQ_24H_20180106_JU_1Rep_grouped_clustered.bed.gz
124.57 kB
m6A_NoQ_24H_20180106_JU_1Rep_grouped_clustered.bedgraph
269.34 kB
iCount peaks
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_peaks.bed.gz
56.14 kB
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_peaks.bedgraph
122.64 kB
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_scores.tsv.gz
520.96 kB
iCount peaks
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_peaks.bed.gz
41.28 kB
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_peaks.bedgraph
84.43 kB
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_scores.tsv.gz
393.91 kB
STAR
m6a-786o-ctrl-3-20180106-ju_trimmed.bam.bai
20.42 kB
m6a-786o-ctrl-3-20180106-ju_trimmed.bam
90.97 MB
m6a-786o-ctrl-3-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-3-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
16.07 MB
m6a-786o-ctrl-3-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-3-20180106-ju_trimmed.bw
106.35 kB
iCount xlsites
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
268 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
57.43 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
98.50 kB
iCount summary
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_gene.tsv
106.39 kB
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_type.tsv
263 B
STAR
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
361.00 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.44 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.07 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
1.28 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.26 kB
STAR
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
5.80 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
32.45 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
2.16 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.67 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
37.79 kB
iCount peaks
demux_NNNNATACGNNN_unique_peaks.bed.gz
106.52 kB
demux_NNNNATACGNNN_unique_scores.tsv.gz
738.55 kB
demux_NNNNATACGNNN_unique_peaks.bedgraph
235.61 kB
iCount xlsites
demux_NNNNAACTCNNN_skipped.bam
3.21 MB
demux_NNNNAACTCNNN_unique.bed.gz
836.99 kB
demux_NNNNAACTCNNN_multi.bed.gz
3.14 MB
demux_NNNNAACTCNNN_unique.bedgraph
3.38 MB
iCount group
m1A_test_grouped.bedgraph
2.68 MB
m1A_test_grouped.bed.gz
682.00 kB
iCount reads proxy
fastqc
Directory
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped.fastq.gz
49.08 MB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_fastqc.zip
529.51 kB
stderr.txt
1.62 kB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_fastqc.zip
726.02 kB
stderr.txt
1.79 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju.fastq.gz
51.62 MB
iCount summary
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single_summary_type.tsv
452 B
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single_summary_subtype.tsv
938 B
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single_summary_gene.tsv
172.69 kB
STAR
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
40.85 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
17.25 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
2.81 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
61.10 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.51 MB
STAR
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
20.56 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam
131.18 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
10.31 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bw
106.60 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.79 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_fastqc.zip
582.51 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju.fastq.gz
2.48 MB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.47 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
2.09 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
958.94 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.46 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
2.27 kB
iCount summary
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
247 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
534 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
15.70 kB
FASTQ file (single-end)
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju.fastq.gz
47.37 MB
fastqc
Directory
stderr.txt
1.77 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_fastqc.zip
570.27 kB
STAR
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam
105.94 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
8.53 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bw
106.51 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
20.56 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
iCount summary
demux_NNNNAACTCNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNAACTCNNN_unique_summary.tsv_summary_gene.tsv
644.84 kB
demux_NNNNAACTCNNN_unique_summary.tsv_summary_subtype.tsv
642 B
STAR
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.48 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
21.28 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
2.02 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
32.67 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.95 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
634.86 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam
3.15 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
17.82 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bw
104.45 kB
iCount group
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped.bed.gz
323.60 kB
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped.bedgraph
1.22 MB
iCount reads proxy
fastqc
Directory
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
553.11 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
634.86 kB
stderr.txt
2.05 kB
iCount xlsites
demux_NNNNATCTGATTNNNNN_trimmed_single.bed.gz
224.79 kB
demux_NNNNATCTGATTNNNNN_trimmed_singleAndMulti.bed.gz
1.63 MB
demux_NNNNATCTGATTNNNNN_trimmed_single.bedgraph
830.24 kB
demux_NNNNATCTGATTNNNNN_trimmed_skipped.bam
3.19 kB
Cutadapt (single-end)
report.txt
687 B
fastqc
Directory
demux_NNNNAGTCCNNN_trimmed_fastqc.zip
478.78 kB
demux_NNNNAGTCCNNN_trimmed.fastq.gz
396.61 MB
STAR
demux_NNNNGCTTGAGGNNNNN_trimmed.bam.bai
2.72 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_SJ.out.tab
50.82 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
6.71 MB
demux_NNNNGCTTGAGGNNNNN_trimmed.bam
125.98 MB
STAR
demux_NNNNCATACNNN_unmapped.out.mate1.fastq.gz
13.58 MB
demux_NNNNCATACNNN.bam
982.54 MB
demux_NNNNCATACNNN.bam.bai
4.23 MB
demux_NNNNCATACNNN_stats.txt
1.80 kB
demux_NNNNCATACNNN_SJ.out.tab
1.05 MB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju.fastq.gz
48.35 MB
stderr.txt
1.75 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_fastqc.zip
503.08 kB
STAR
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
9.15 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed.bam.bai
18.24 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed.bam
67.43 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed.bw
105.03 kB
STAR
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
2.81 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
16.17 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.78 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.27 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
44.22 kB
Reads (single-end)
demux_NNNNGTTTCNNN_fastqc.zip
444.72 kB
fastqc
Directory
stderr.txt
975 B
demux_NNNNGTTTCNNN.fastq.gz
328.66 MB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCACANNN.fastq.gz
65.88 MB
demux_NNNNTCACANNN_fastqc.zip
434.69 kB
FASTQ file (single-end)
igg-786o-20180420-ju.fastq.gz
40.23 MB
fastqc
Directory
igg-786o-20180420-ju_fastqc.zip
547.95 kB
stderr.txt
1015 B
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGATTNNNNN.fastq.gz
37.61 MB
demux_NNNNGCTTGATTNNNNN_fastqc.zip
400.44 kB
stderr.txt
1.05 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTCTNNN.fastq.gz
30.51 MB
stderr.txt
975 B
demux_NNNNGCTCTNNN_fastqc.zip
449.52 kB
STAR
demux_NNNNGCTTGAGGNNNNN_trimmed.bam
125.95 MB
demux_NNNNGCTTGAGGNNNNN_trimmed.bam.bai
2.72 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
6.71 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_SJ.out.tab
50.82 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNATCTGTTANNNNN_trimmed.bam.bai
2.82 MB
demux_NNNNATCTGTTANNNNN_trimmed_SJ.out.tab
61.06 kB
demux_NNNNATCTGTTANNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNATCTGTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
8.44 MB
demux_NNNNATCTGTTANNNNN_trimmed.bam
145.15 MB
FASTQ file (single-end)
m1a-786o-20180420-ju_fastqc.zip
544.33 kB
m1a-786o-20180420-ju.fastq.gz
426.75 MB
fastqc
Directory
stderr.txt
1015 B
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGTGCNNNNN.fastq.gz
21.13 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGTGCNNNNN_fastqc.zip
415.04 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCCGGANNN.fastq.gz
113.02 MB
stderr.txt
1.00 kB
demux_NNNNCCGGANNN_fastqc.zip
452.96 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCTGNNNNN.fastq.gz
17.83 MB
stderr.txt
1.10 kB
demux_NNNNGCTTGCTGNNNNN_fastqc.zip
411.67 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-wtvhl-20180420-ju_fastqc.zip
544.78 kB
m1a-786o-wtvhl-20180420-ju.fastq.gz
267.82 MB
stderr.txt
1.11 kB
STAR
m6a-786o-20180420-ju_trimmed.bam
665.59 MB
m6a-786o-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
119.24 MB
m6a-786o-20180420-ju_trimmed_stats.txt
1.79 kB
m6a-786o-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-786o-20180420-ju_trimmed_SJ.out.tab
0 B
iCount peaks
demux_NNNNAGGCANNN_unique_scores.tsv.gz
381.72 kB
demux_NNNNAGGCANNN_unique_peaks.bed.gz
52.55 kB
demux_NNNNAGGCANNN_unique_peaks.bedgraph
110.33 kB
iCount peaks
demux_NNNNCAGGGNNN_unique_scores.tsv.gz
73.41 kB
demux_NNNNCAGGGNNN_unique_peaks.bedgraph
31.90 kB
demux_NNNNCAGGGNNN_unique_peaks.bed.gz
15.62 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGGAGCNNN.fastq.gz
432.36 MB
demux_NNNNGGAGCNNN_fastqc.zip
465.59 kB
stderr.txt
975 B
STAR
demux_NNNNTGAAANNN_unmapped.out.mate1.fastq.gz
102.62 MB
demux_NNNNTGAAANNN_stats.txt
1.81 kB
demux_NNNNTGAAANNN.bam.bai
3.49 MB
demux_NNNNTGAAANNN.bam
1.67 GB
demux_NNNNTGAAANNN_SJ.out.tab
137.32 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCTGTANNN.fastq.gz
197.30 MB
stderr.txt
975 B
demux_NNNNCTGTANNN_fastqc.zip
462.31 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCCTGCNNN.fastq.gz
136.75 MB
stderr.txt
975 B
demux_NNNNCCTGCNNN_fastqc.zip
419.55 kB
Reads (single-end)
demux_NNNNCCGGANNN.fastq.gz
27.41 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNCCGGANNN_fastqc.zip
452.50 kB
STAR
demux_NNNNATACGNNN.bam
318.05 MB
demux_NNNNATACGNNN.bam.bai
1.93 MB
demux_NNNNATACGNNN_stats.txt
1.81 kB
demux_NNNNATACGNNN_SJ.out.tab
27.12 kB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
39.84 MB
iCount xlsites
demux_NNNNGCTTGCTGNNNNN_skipped.bam
429.10 kB
demux_NNNNGCTTGCTGNNNNN_unique.bed.gz
123.37 kB
demux_NNNNGCTTGCTGNNNNN_unique.bedgraph
441.47 kB
demux_NNNNGCTTGCTGNNNNN_multi.bed.gz
1.08 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCTGNNNNN_fastqc.zip
405.60 kB
demux_NNNNGCTTGCTGNNNNN.fastq.gz
17.87 MB
stderr.txt
1.05 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCTGATTNNNNN.fastq.gz
42.12 MB
demux_NNNNATCTGATTNNNNN_fastqc.zip
397.11 kB
stderr.txt
1.05 kB
iCount summary
demux_NNNNTGTGGNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNTGTGGNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNTGTGGNNN_unique_summary.tsv_summary_gene.tsv
94.38 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGNNN.fastq.gz
88.57 MB
stderr.txt
975 B
demux_NNNNGCTTGNNN_fastqc.zip
465.24 kB
STAR
demux_NNNNGTAGANNN_unmapped.out.mate1.fastq.gz
169.56 MB
demux_NNNNGTAGANNN.bam
3.02 GB
demux_NNNNGTAGANNN.bam.bai
4.48 MB
demux_NNNNGTAGANNN_SJ.out.tab
212.20 kB
demux_NNNNGTAGANNN_stats.txt
1.82 kB
STAR
demux_NNNNCTGTANNN_unmapped.out.mate1.fastq.gz
12.61 MB
demux_NNNNCTGTANNN.bam
223.52 MB
demux_NNNNCTGTANNN.bam.bai
2.21 MB
demux_NNNNCTGTANNN_stats.txt
1.80 kB
demux_NNNNCTGTANNN_SJ.out.tab
48.57 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCCACNNN.fastq.gz
71.14 MB
demux_NNNNTCCACNNN_fastqc.zip
473.89 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGTAACNNN_fastqc.zip
425.29 kB
demux_NNNNGTAACNNN.fastq.gz
32.10 MB
STAR
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
23.06 MB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed.bam.bai
20.49 kB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed.bam
125.90 MB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed.bw
106.51 kB
iCount xlsites
demux_NNNNAGTTANNN_trimmed_skipped.bam
4.71 kB
demux_NNNNAGTTANNN_trimmed_single.bed.gz
2.03 MB
demux_NNNNAGTTANNN_trimmed_singleAndMulti.bed.gz
5.95 MB
demux_NNNNAGTTANNN_trimmed_single.bedgraph
9.13 MB
Reads (single-end)
fastqc
Directory
demux_NNNNAGTTANNN_fastqc.zip
461.71 kB
stderr.txt
975 B
demux_NNNNAGTTANNN.fastq.gz
298.21 MB
Reads (single-end)
fastqc
Directory
demux_NNNNAACTCNNN.fastq.gz
43.13 MB
stderr.txt
975 B
demux_NNNNAACTCNNN_fastqc.zip
443.35 kB
iCount group
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped.bedgraph
1.47 MB
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped.bed.gz
384.92 kB
iCount summary
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
665 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
442 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
45.43 kB
iCount summary
demux_NNNNGATCGNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGATCGNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNGATCGNNN_unique_summary.tsv_summary_gene.tsv
104.57 kB
iCount group
Input_Control 4hrs_20180223_JU_1Rep_grouped.bedgraph
1.05 MB
Input_Control 4hrs_20180223_JU_1Rep_grouped.bed.gz
284.32 kB
iCount clusters
Input_Control 15min_20180223_JU_1Rep_grouped_clustered.bedgraph
54.87 kB
Input_Control 15min_20180223_JU_1Rep_grouped_clustered.bed.gz
38.21 kB
iCount group
Input_Control 15min_20180223_JU_1Rep_grouped.bedgraph
1.62 MB
Input_Control 15min_20180223_JU_1Rep_grouped.bed.gz
424.25 kB
iCount reads proxy
m6A_786O_Ctrl15'_20180106_JU_unmapped.fastq.gz
6.26 MB
fastqc
Directory
m6A_786O_Ctrl15'_20180106_JU_unmapped_fastqc.zip
554.58 kB
stderr.txt
1.38 kB
iCount xlsites
demux_NNNNATACGNNN_skipped.bam
277.24 kB
demux_NNNNATACGNNN_unique.bedgraph
175.89 kB
demux_NNNNATACGNNN_unique.bed.gz
50.58 kB
demux_NNNNATACGNNN_multi.bed.gz
495.86 kB
iCount summary
demux_NNNNGCTTGNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNGCTTGNNN_unique_summary.tsv_summary_gene.tsv
113.85 kB
demux_NNNNGCTTGNNN_unique_summary.tsv_summary_subtype.tsv
630 B
iCount summary
demux_NNNNATCTGNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNATCTGNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNATCTGNNN_unique_summary.tsv_summary_gene.tsv
112.78 kB
iCount clusters
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_clustered.bed.gz
35.34 kB
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_clustered.bedgraph
50.70 kB
iCount group
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped.bedgraph
1.82 MB
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped.bed.gz
452.27 kB
Paraclu
peaks.bed.gz
159 B
iCount RNA-maps
results.tar.gz
376.03 kB
STAR
demux_NNNNAGTTANNN.bam.bai
1.81 MB
demux_NNNNAGTTANNN_unmapped.out.mate1.fastq.gz
2.92 MB
demux_NNNNAGTTANNN.bam
80.37 MB
demux_NNNNAGTTANNN_stats.txt
1.79 kB
demux_NNNNAGTTANNN_SJ.out.tab
18.59 kB
STAR
demux_NNNNTCGCCNNN_unmapped.out.mate1.fastq.gz
8.63 MB
demux_NNNNTCGCCNNN_stats.txt
1.80 kB
demux_NNNNTCGCCNNN.bam.bai
3.75 MB
demux_NNNNTCGCCNNN.bam
610.82 MB
demux_NNNNTCGCCNNN_SJ.out.tab
765.32 kB
iCount clusters
m1A_Ctrl_15min_2Reps_grouped_clustered.bedgraph
42.14 kB
m1A_Ctrl_15min_2Reps_grouped_clustered.bed.gz
30.01 kB
STAR
m6a_noq__dm-akg_15_20180106_ju-2_unmapped.bam.bai
1.45 MB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_stats.txt
1.79 kB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_SJ.out.tab
8.10 kB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped.bam
9.77 MB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
2.75 MB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped.bw
18.75 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.34 kB
m6A_786O_NoQ3'_20180106_JU_unmapped.fastq.gz
18.02 MB
m6A_786O_NoQ3'_20180106_JU_unmapped_fastqc.zip
475.91 kB
STAR
demux_NNNNCAGGGNNN_unmapped.out.mate1.fastq.gz
163.08 MB
demux_NNNNCAGGGNNN_stats.txt
1.81 kB
demux_NNNNCAGGGNNN.bam.bai
3.70 MB
demux_NNNNCAGGGNNN.bam
1.84 GB
demux_NNNNCAGGGNNN_SJ.out.tab
220.48 kB
iCount annotate
m1A_786O_NoQ 4H_2Reps_grouped_annotated.bed.gz
370.95 kB
m1A_786O_NoQ 4H_2Reps_grouped_annotated.bedgraph
1.02 MB
iCount clusters
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_clustered.bed.gz
11.06 kB
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_clustered.bedgraph
14.62 kB
STAR
m6a_noq_24h_20180106_ju-2_unmapped.bam.bai
1.91 MB
m6a_noq_24h_20180106_ju-2_unmapped.bam
35.33 MB
m6a_noq_24h_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
7.67 MB
m6a_noq_24h_20180106_ju-2_unmapped.bw
25.01 kB
m6a_noq_24h_20180106_ju-2_unmapped_stats.txt
1.80 kB
m6a_noq_24h_20180106_ju-2_unmapped_SJ.out.tab
148.15 kB
iCount clusters
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_clustered.bed.gz
45.79 kB
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_clustered.bedgraph
65.83 kB
STAR
m6a_noq_3_20180106_ju-2_unmapped.bam.bai
1.79 MB
m6a_noq_3_20180106_ju-2_unmapped.bw
22.58 kB
m6a_noq_3_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
4.77 MB
m6a_noq_3_20180106_ju-2_unmapped_stats.txt
1.80 kB
m6a_noq_3_20180106_ju-2_unmapped.bam
19.00 MB
m6a_noq_3_20180106_ju-2_unmapped_SJ.out.tab
69.48 kB
STAR
demux_NNNNGCTTGCGTNNNNN.bam.bai
2.69 MB
demux_NNNNGCTTGCGTNNNNN_unmapped.out.mate1.fastq.gz
5.80 MB
demux_NNNNGCTTGCGTNNNNN.bam
105.23 MB
demux_NNNNGCTTGCGTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGCGTNNNNN_SJ.out.tab
45.41 kB
iCount group
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped.bed.gz
60.09 kB
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped.bedgraph
218.86 kB
iCount annotate
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_annotated.bed.gz
611.83 kB
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_annotated.bedgraph
1.61 MB
iCount xlsites
demux_NNNNTCCACNNN_skipped.bam
1.21 MB
demux_NNNNTCCACNNN_unique.bed.gz
104.22 kB
demux_NNNNTCCACNNN_unique.bedgraph
384.41 kB
demux_NNNNTCCACNNN_multi.bed.gz
787.21 kB
STAR
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped.bam.bai
1.95 MB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_SJ.out.tab
170.90 kB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
8.66 MB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_stats.txt
1.80 kB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped.bam
39.36 MB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped.bw
25.55 kB
Upload iCount sample annotation
786O_miCLIP_iMaps_annotation_20180420_JU.xlsx
16.76 kB
786O_miCLIP_iMaps_annotation_20180420_JU.tab.gz
815 B
iCount xlsites
m1a_786o_noq-15min_20180413_ju_unmapped_single.bed.gz
115.79 kB
m1a_786o_noq-15min_20180413_ju_unmapped_skipped.bam
3.91 kB
m1a_786o_noq-15min_20180413_ju_unmapped_reads_single.bed.gz
123.74 kB
m1a_786o_noq-15min_20180413_ju_unmapped_single.bedgraph
415.40 kB
m1a_786o_noq-15min_20180413_ju_unmapped_singleAndMulti.bed.gz
483.24 kB
iCount annotate
Input_Control 4hrs_20180223_JU_1Rep_grouped_annotated.bed.gz
413.73 kB
Input_Control 4hrs_20180223_JU_1Rep_grouped_annotated.bedgraph
1.05 MB
STAR
igg_786o_rabbit-igg_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
4.77 MB
igg_786o_rabbit-igg_20180413_ju_unmapped.bam.bai
1.56 MB
igg_786o_rabbit-igg_20180413_ju_unmapped_SJ.out.tab
17.94 kB
igg_786o_rabbit-igg_20180413_ju_unmapped_stats.txt
1.79 kB
igg_786o_rabbit-igg_20180413_ju_unmapped.bam
14.30 MB
igg_786o_rabbit-igg_20180413_ju_unmapped.bw
20.15 kB
STAR
m62a_786o_ctrl-4h_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
40.06 MB
m62a_786o_ctrl-4h_20180413_ju_unmapped.bam
122.55 MB
m62a_786o_ctrl-4h_20180413_ju_unmapped_stats.txt
1.81 kB
m62a_786o_ctrl-4h_20180413_ju_unmapped.bam.bai
1.89 MB
m62a_786o_ctrl-4h_20180413_ju_unmapped.bw
23.40 kB
m62a_786o_ctrl-4h_20180413_ju_unmapped_SJ.out.tab
56.97 kB
STAR
demux_NNNNATCCANNN_unmapped.out.mate1.fastq.gz
40.52 MB
demux_NNNNATCCANNN_stats.txt
1.81 kB
demux_NNNNATCCANNN.bam
299.73 MB
demux_NNNNATCCANNN_SJ.out.tab
115.12 kB
demux_NNNNATCCANNN.bam.bai
4.08 MB
STAR
m62a_786o_ctrl-15min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
52.41 MB
m62a_786o_ctrl-15min_20180413_ju_unmapped.bam.bai
1.98 MB
m62a_786o_ctrl-15min_20180413_ju_unmapped.bam
172.73 MB
m62a_786o_ctrl-15min_20180413_ju_unmapped_stats.txt
1.81 kB
m62a_786o_ctrl-15min_20180413_ju_unmapped_SJ.out.tab
72.92 kB
iCount xlsites
demux_NNNNATCTGATTNNNNN_skipped.bam
794.65 kB
demux_NNNNATCTGATTNNNNN_unique.bed.gz
206.67 kB
demux_NNNNATCTGATTNNNNN_unique.bedgraph
760.44 kB
demux_NNNNATCTGATTNNNNN_multi.bed.gz
1.55 MB
STAR
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.bam.bai
1.76 MB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.bw
21.47 kB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_SJ.out.tab
36.75 kB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.bam
68.35 MB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_stats.txt
1.80 kB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
22.94 MB
Paraclu
peaks.bed.gz
4.73 kB
iCount RNA-maps
results.tar.gz
326.48 kB
STAR
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
14.37 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.46 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.61 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.64 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
20.62 kB
STAR
IgG_786O_RabbitIgG_20180106_JU_unmapped.bw
18.09 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped.bam.bai
1.57 MB
IgG_786O_RabbitIgG_20180106_JU_unmapped.bam
5.00 MB
IgG_786O_RabbitIgG_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
909.92 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_stats.txt
1.80 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_SJ.out.tab
8.40 kB
iCount xlsites
demux_NNNNATACGNNN_unique.bed.gz
64.24 kB
demux_NNNNATACGNNN_skipped.bam
1.79 MB
demux_NNNNATACGNNN_multi.bed.gz
533.57 kB
demux_NNNNATACGNNN_unique.bedgraph
235.41 kB
STAR
m6a_786o_noq-15min_20180413_ju_unmapped.bam
66.07 MB
m6a_786o_noq-15min_20180413_ju_unmapped.bw
21.12 kB
m6a_786o_noq-15min_20180413_ju_unmapped_stats.txt
1.80 kB
m6a_786o_noq-15min_20180413_ju_unmapped.bam.bai
1.75 MB
m6a_786o_noq-15min_20180413_ju_unmapped_SJ.out.tab
38.11 kB
m6a_786o_noq-15min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
22.09 MB
STAR
igg-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
2.16 MB
igg-786o-20180420-jufastqgz_unmapped_SJ.out.tab
9.83 kB
igg-786o-20180420-jufastqgz_unmapped.bam
6.56 MB
igg-786o-20180420-jufastqgz_unmapped_stats.txt
1.79 kB
igg-786o-20180420-jufastqgz_unmapped.bw
18.99 kB
igg-786o-20180420-jufastqgz_unmapped.bam.bai
1.48 MB
iCount xlsites
m6A_786O_Ctrl24H_20180106_JU_unmapped_single.bed.gz
1.26 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_singleAndMulti.bed.gz
2.25 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_single.bedgraph
5.77 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_skipped.bam
3.30 kB
STAR
demux_NNNNCAGGGNNN.bam.bai
1.89 MB
demux_NNNNCAGGGNNN.bam
272.19 MB
demux_NNNNCAGGGNNN_unmapped.out.mate1.fastq.gz
36.34 MB
demux_NNNNCAGGGNNN_stats.txt
1.81 kB
demux_NNNNCAGGGNNN_SJ.out.tab
22.49 kB
iCount clusters
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_clustered.bedgraph
339.13 kB
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_clustered.bed.gz
152.08 kB
iCount peaks
demux_NNNNCATACNNN_unique_peaks.bed.gz
285.43 kB
demux_NNNNCATACNNN_unique_scores.tsv.gz
2.25 MB
demux_NNNNCATACNNN_unique_peaks.bedgraph
850.00 kB
iCount xlsites
demux_NNNNCCTGCNNN_trimmed_singleAndMulti.bed.gz
3.48 MB
demux_NNNNCCTGCNNN_trimmed_reads_single.bed.gz
631.65 kB
demux_NNNNCCTGCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCCTGCNNN_trimmed_single.bed.gz
529.66 kB
demux_NNNNCCTGCNNN_trimmed_single.bedgraph
2.13 MB
iCount clusters
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_clustered.bedgraph
162.13 kB
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_clustered.bed.gz
81.78 kB
iCount group
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped.bedgraph
1.28 MB
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped.bed.gz
338.18 kB
iCount summary
demux_NNNNGTAGANNN_unique_summary.tsv_summary_gene.tsv
640.86 kB
demux_NNNNGTAGANNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNGTAGANNN_unique_summary.tsv_summary_subtype.tsv
638 B
iCount xlsites
demux_NNNNTCGCCNNN_skipped.bam
4.98 MB
demux_NNNNTCGCCNNN_unique.bed.gz
1.46 MB
demux_NNNNTCGCCNNN_multi.bed.gz
4.90 MB
demux_NNNNTCGCCNNN_unique.bedgraph
6.23 MB
STAR
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
46.19 MB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped.bam.bai
1.91 MB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_stats.txt
1.80 kB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped.bam
112.90 MB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_SJ.out.tab
80.13 kB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped.bw
22.85 kB
iCount summary
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_subtype.tsv
642 B
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_gene.tsv
962.83 kB
STAR
demux_NNNNTCGCCNNN.bam.bai
2.59 MB
demux_NNNNTCGCCNNN_SJ.out.tab
93.91 kB
demux_NNNNTCGCCNNN.bam
641.02 MB
demux_NNNNTCGCCNNN_stats.txt
1.81 kB
demux_NNNNTCGCCNNN_unmapped.out.mate1.fastq.gz
63.86 MB
iCount reads proxy
fastqc
Directory
m6a_786o_noq-15min_20180413_ju_unmapped.fastq.gz
29.79 MB
stderr.txt
1.42 kB
m6a_786o_noq-15min_20180413_ju_unmapped_fastqc.zip
499.29 kB
STAR
demux_NNNNTATGANNN_unmapped.out.mate1.fastq.gz
115.52 MB
demux_NNNNTATGANNN.bam.bai
3.13 MB
demux_NNNNTATGANNN_SJ.out.tab
173.00 kB
demux_NNNNTATGANNN_stats.txt
1.81 kB
demux_NNNNTATGANNN.bam
1.18 GB
STAR
m6a_ctrl_15_20180106_ju-2_unmapped_stats.txt
1.79 kB
m6a_ctrl_15_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
2.23 MB
m6a_ctrl_15_20180106_ju-2_unmapped.bam.bai
1.45 MB
m6a_ctrl_15_20180106_ju-2_unmapped.bam
7.95 MB
m6a_ctrl_15_20180106_ju-2_unmapped.bw
18.43 kB
m6a_ctrl_15_20180106_ju-2_unmapped_SJ.out.tab
5.96 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCTGTANNN.fastq.gz
39.39 MB
stderr.txt
975 B
demux_NNNNCTGTANNN_fastqc.zip
469.56 kB
iCount summary
demux_NNNNTGAAANNN_unique_summary.tsv_summary_type.tsv
270 B
demux_NNNNTGAAANNN_unique_summary.tsv_summary_gene.tsv
930.51 kB
demux_NNNNTGAAANNN_unique_summary.tsv_summary_subtype.tsv
650 B
iCount xlsites
demux_NNNNTCGAGNNN_skipped.bam
3.77 MB
demux_NNNNTCGAGNNN_unique.bed.gz
1.10 MB
demux_NNNNTCGAGNNN_multi.bed.gz
3.45 MB
Cutadapt (single-end)
demux_NNNNGCTTGATTNNNNN_trimmed_fastqc.zip
399.82 kB
fastqc
Directory
demux_NNNNGCTTGATTNNNNN_trimmed.fastq.gz
31.26 MB
report.txt
674 B
Reads (single-end)
demux_NNNNTCGCCNNN.fastq.gz
148.37 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCGCCNNN_fastqc.zip
480.96 kB
STAR
m6a_noq_4h_20180106_ju-2_unmapped.bam
46.50 MB
m6a_noq_4h_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
10.98 MB
m6a_noq_4h_20180106_ju-2_unmapped.bam.bai
2.04 MB
m6a_noq_4h_20180106_ju-2_unmapped_SJ.out.tab
177.79 kB
m6a_noq_4h_20180106_ju-2_unmapped_stats.txt
1.80 kB
m6a_noq_4h_20180106_ju-2_unmapped.bw
26.27 kB
iCount summary
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCACAGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
546.70 kB
iCount clusters
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_clustered.bedgraph
73.71 kB
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_clustered.bed.gz
49.38 kB
STAR
demux_NNNNTATGANNN.bam
301.91 MB
demux_NNNNTATGANNN_stats.txt
1.81 kB
demux_NNNNTATGANNN_unmapped.out.mate1.fastq.gz
44.88 MB
demux_NNNNTATGANNN_SJ.out.tab
57.57 kB
demux_NNNNTATGANNN.bam.bai
2.73 MB
iCount xlsites
m1a-786o-20180420-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-20180420-ju_trimmed_single.bedgraph
190 B
m1a-786o-20180420-ju_trimmed_single.bed.gz
106.01 kB
m1a-786o-20180420-ju_trimmed_singleAndMulti.bed.gz
183.10 kB
iCount clusters
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_clustered.bedgraph
20.49 kB
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_clustered.bed.gz
15.35 kB
STAR
m1a-786o-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
96.98 MB
m1a-786o-20180420-ju_trimmed.bam
1.08 GB
m1a-786o-20180420-ju_trimmed.bam.bai
20.56 kB
m1a-786o-20180420-ju_trimmed_stats.txt
1.79 kB
m1a-786o-20180420-ju_trimmed_SJ.out.tab
0 B
Reads (single-end)
fastqc
Directory
demux_NNNNGTAGANNN.fastq.gz
352.03 MB
stderr.txt
975 B
demux_NNNNGTAGANNN_fastqc.zip
455.50 kB
STAR
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped.bam.bai
1.90 MB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
24.25 MB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_stats.txt
1.80 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_SJ.out.tab
69.11 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped.bw
22.81 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped.bam
79.87 MB
STAR
demux_NNNNAGTCCNNN.bam
2.66 GB
demux_NNNNAGTCCNNN_stats.txt
1.82 kB
demux_NNNNAGTCCNNN.bam.bai
4.44 MB
demux_NNNNAGTCCNNN_unmapped.out.mate1.fastq.gz
99.91 MB
demux_NNNNAGTCCNNN_SJ.out.tab
346.86 kB
iCount summary
m1a-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
645 B
m1a-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
753.15 kB
m1a-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
267 B
Paraclu
peaks.bed.gz
249 B
iCount summary
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_subtype.tsv
644 B
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_gene.tsv
851.01 kB
iCount xlsites
demux_NNNNGTTTCNNN_unique.bed.gz
2.03 MB
demux_NNNNGTTTCNNN_multi.bed.gz
6.99 MB
demux_NNNNGTTTCNNN_skipped.bam
5.90 MB
demux_NNNNGTTTCNNN_unique.bedgraph
8.68 MB
STAR
m1a_786o_noq-4h_20180413_ju_unmapped.bam
85.15 MB
m1a_786o_noq-4h_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
35.03 MB
m1a_786o_noq-4h_20180413_ju_unmapped_stats.txt
1.80 kB
m1a_786o_noq-4h_20180413_ju_unmapped.bam.bai
1.81 MB
m1a_786o_noq-4h_20180413_ju_unmapped_SJ.out.tab
53.71 kB
m1a_786o_noq-4h_20180413_ju_unmapped.bw
21.44 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.46 kB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_fastqc.zip
465.42 kB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped.fastq.gz
13.84 MB
iCount summary
demux_NNNNATACGNNN_unique_summary.tsv_summary_gene.tsv
148.08 kB
demux_NNNNATACGNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_subtype.tsv
626 B
iCount group
m6A_NoQ+DM-Akg_4hrs_2Reps_grouped.bed.gz
3.01 MB
m6A_NoQ+DM-Akg_4hrs_2Reps_grouped.bedgraph
14.08 MB
iCount clusters
m6A_786O__Ctrl_7Reps_grouped_clustered.bed.gz
321.40 kB
m6A_786O__Ctrl_7Reps_grouped_clustered.bedgraph
751.44 kB
iCount clusters
m6A_NoQ+DM-Akg_4hrs_2Reps_grouped_clustered.bed.gz
216.50 kB
m6A_NoQ+DM-Akg_4hrs_2Reps_grouped_clustered.bedgraph
479.93 kB
iCount group
test2_m6A_786O_NoQ4hrs_2reps_grouped.bed.gz
3.40 MB
test2_m6A_786O_NoQ4hrs_2reps_grouped.bedgraph
15.96 MB
Reads (single-end)
fastqc
Directory
demux_NNNNAGGCANNN.fastq.gz
362.58 MB
stderr.txt
975 B
demux_NNNNAGGCANNN_fastqc.zip
476.40 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGAAANNN.fastq.gz
300.95 MB
stderr.txt
975 B
demux_NNNNTGAAANNN_fastqc.zip
487.09 kB
Reads (single-end)
demux_NNNNTCATCNNN_fastqc.zip
483.90 kB
fastqc
Directory
demux_NNNNTCATCNNN.fastq.gz
370.15 MB
stderr.txt
975 B
STAR
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped.bam
40.64 MB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped.bam.bai
1.53 MB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped.bw
18.36 kB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_SJ.out.tab
8.25 kB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_stats.txt
1.80 kB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
18.36 MB
STAR
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
3.37 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
11.01 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
15.05 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.60 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
18.95 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
iCount clusters
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_clustered.bed.gz
30.65 kB
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_clustered.bedgraph
43.39 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGTGGNNN.fastq.gz
51.97 MB
stderr.txt
975 B
demux_NNNNTGTGGNNN_fastqc.zip
435.67 kB
iCount summary
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single_summary_subtype.tsv
643 B
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single_summary_type.tsv
269 B
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single_summary_gene.tsv
944.59 kB
iCount clusters
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_clustered.bed.gz
38.14 kB
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_clustered.bedgraph
55.31 kB
STAR
m6a_786o_noq-4h_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
28.23 MB
m6a_786o_noq-4h_20180413_ju_unmapped.bam
93.51 MB
m6a_786o_noq-4h_20180413_ju_unmapped.bam.bai
1.93 MB
m6a_786o_noq-4h_20180413_ju_unmapped_SJ.out.tab
73.17 kB
m6a_786o_noq-4h_20180413_ju_unmapped.bw
23.32 kB
m6a_786o_noq-4h_20180413_ju_unmapped_stats.txt
1.80 kB
iCount xlsites
demux_NNNNATACGNNN_multi.bed.gz
3.11 MB
demux_NNNNATACGNNN_skipped.bam
3.47 MB
demux_NNNNATACGNNN_unique.bed.gz
983.76 kB
iCount group
m6A_786O__20180420_JU_1Rep_grouped.bed.gz
80.06 kB
m6A_786O__20180420_JU_1Rep_grouped.bedgraph
295.55 kB
STAR
demux_NNNNATACGNNN.bam.bai
3.91 MB
demux_NNNNATACGNNN_stats.txt
1.80 kB
demux_NNNNATACGNNN_SJ.out.tab
485.67 kB
demux_NNNNATACGNNN.bam
537.41 MB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
9.05 MB
iCount clusters
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_clustered.bedgraph
358.09 kB
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_clustered.bed.gz
179.85 kB
STAR
demux_NNNNAACTCNNN_unmapped.out.mate1.fastq.gz
5.15 MB
demux_NNNNAACTCNNN_stats.txt
1.80 kB
demux_NNNNAACTCNNN.bam.bai
1.96 MB
demux_NNNNAACTCNNN_SJ.out.tab
24.46 kB
demux_NNNNAACTCNNN.bam
285.47 MB
iCount clusters
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_clustered.bed.gz
27.25 kB
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_clustered.bedgraph
37.83 kB
iCount group
m1A_786O_10Reps_grouped.bed.gz
1.49 MB
m1A_786O_10Reps_grouped.bedgraph
6.23 MB
iCount xlsites
demux_NNNNGTTTCNNN_skipped.bam
1.30 MB
demux_NNNNGTTTCNNN_unique.bed.gz
36.81 kB
demux_NNNNGTTTCNNN_multi.bed.gz
397.28 kB
iCount clusters
m6A_NoQ_15min_20180106_JU_1Rep_grouped_clustered.bed.gz
70.09 kB
m6A_NoQ_15min_20180106_JU_1Rep_grouped_clustered.bedgraph
130.93 kB
iCount clusters
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_clustered.bed.gz
46.36 kB
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_clustered.bedgraph
66.78 kB
STAR
demux_NNNNTCGAGNNN_unmapped.out.mate1.fastq.gz
10.24 MB
demux_NNNNTCGAGNNN.bam
548.69 MB
demux_NNNNTCGAGNNN_stats.txt
1.80 kB
demux_NNNNTCGAGNNN_SJ.out.tab
524.25 kB
demux_NNNNTCGAGNNN.bam.bai
4.05 MB
STAR
m6a_noq__dm-akg_3_20180106_ju-2_unmapped.bam
26.38 MB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
6.25 MB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped.bam.bai
1.84 MB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_stats.txt
1.80 kB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_SJ.out.tab
100.23 kB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped.bw
23.54 kB
iCount RNA-maps
results.tar.gz
381.63 kB
STAR
m1a-786o-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-20180420-jufastqgz_unmapped.bam
103.98 MB
m1a-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
37.30 MB
m1a-786o-20180420-jufastqgz_unmapped.bam.bai
2.01 MB
m1a-786o-20180420-jufastqgz_unmapped_SJ.out.tab
118.10 kB
m1a-786o-20180420-jufastqgz_unmapped.bw
25.16 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.00 kB
demux_NNNNAGTTANNN.fastq.gz
16.32 MB
demux_NNNNAGTTANNN_fastqc.zip
458.95 kB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNATACGNNN.fastq.gz
66.26 MB
demux_NNNNATACGNNN_fastqc.zip
431.33 kB
STAR
igg_786o_mouse-igg_20180413_ju_unmapped.bam
9.12 MB
igg_786o_mouse-igg_20180413_ju_unmapped_SJ.out.tab
23.79 kB
igg_786o_mouse-igg_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
2.66 MB
igg_786o_mouse-igg_20180413_ju_unmapped_stats.txt
1.79 kB
igg_786o_mouse-igg_20180413_ju_unmapped.bam.bai
1.53 MB
igg_786o_mouse-igg_20180413_ju_unmapped.bw
20.17 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGGAGCNNN.fastq.gz
165.15 MB
stderr.txt
975 B
demux_NNNNGGAGCNNN_fastqc.zip
424.04 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGCCNNN.fastq.gz
74.42 MB
demux_NNNNTCGCCNNN_fastqc.zip
442.81 kB
stderr.txt
1.00 kB
iCount summary
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
635 B
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
111.45 kB
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
261 B
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCATCNNN.fastq.gz
49.22 MB
demux_NNNNTCATCNNN_fastqc.zip
442.00 kB
STAR
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
1.56 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.49 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
7.00 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
11.40 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
18.60 kB
iCount RNA-maps
results.tar.gz
338.37 kB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNTCGAGNNN.fastq.gz
69.97 MB
demux_NNNNTCGAGNNN_fastqc.zip
426.06 kB
Reads (single-end)
demux_NNNNCATACNNN.fastq.gz
116.88 MB
fastqc
Directory
demux_NNNNCATACNNN_fastqc.zip
425.31 kB
stderr.txt
975 B
STAR
m1a_786o_ctrl-4h_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
64.68 MB
m1a_786o_ctrl-4h_20180413_ju_unmapped.bam.bai
1.97 MB
m1a_786o_ctrl-4h_20180413_ju_unmapped.bam
159.19 MB
m1a_786o_ctrl-4h_20180413_ju_unmapped_stats.txt
1.81 kB
m1a_786o_ctrl-4h_20180413_ju_unmapped_SJ.out.tab
92.86 kB
m1a_786o_ctrl-4h_20180413_ju_unmapped.bw
23.64 kB
iCount xlsites
m1a_786o_noq-3min_20180413_ju_unmapped_skipped.bam
2.93 kB
m1a_786o_noq-3min_20180413_ju_unmapped_single.bed.gz
17.82 kB
m1a_786o_noq-3min_20180413_ju_unmapped_single.bedgraph
60.32 kB
m1a_786o_noq-3min_20180413_ju_unmapped_singleAndMulti.bed.gz
82.41 kB
m1a_786o_noq-3min_20180413_ju_unmapped_reads_single.bed.gz
19.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAGTCCNNN.fastq.gz
143.05 MB
demux_NNNNAGTCCNNN_fastqc.zip
473.08 kB
stderr.txt
975 B
STAR
m6a_noq_15_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
2.43 MB
m6a_noq_15_20180106_ju-2_unmapped.bam
8.05 MB
m6a_noq_15_20180106_ju-2_unmapped.bam.bai
1.46 MB
m6a_noq_15_20180106_ju-2_unmapped_stats.txt
1.79 kB
m6a_noq_15_20180106_ju-2_unmapped_SJ.out.tab
6.38 kB
m6a_noq_15_20180106_ju-2_unmapped.bw
18.42 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
demux_NNNNTCACANNN_trimmed_fastqc.zip
472.34 kB
demux_NNNNTCACANNN_trimmed.fastq.gz
36.64 MB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNGTAACNNN_fastqc.zip
423.83 kB
demux_NNNNGTAACNNN.fastq.gz
138.95 MB
STAR
m6a_ctrl_24h_20180106_ju-2_unmapped.bam.bai
1.77 MB
m6a_ctrl_24h_20180106_ju-2_unmapped.bam
22.26 MB
m6a_ctrl_24h_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
4.64 MB
m6a_ctrl_24h_20180106_ju-2_unmapped_stats.txt
1.80 kB
m6a_ctrl_24h_20180106_ju-2_unmapped_SJ.out.tab
100.72 kB
m6a_ctrl_24h_20180106_ju-2_unmapped.bw
22.84 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
685 B
demux_NNNNCATACNNN_trimmed.fastq.gz
119.40 MB
demux_NNNNCATACNNN_trimmed_fastqc.zip
460.12 kB
iCount reads proxy
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped.fastq.gz
12.43 MB
fastqc
Directory
stderr.txt
1.48 kB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_fastqc.zip
460.55 kB
iCount xlsites
demux_NNNNTCGAGNNN_skipped.bam
1.34 MB
demux_NNNNTCGAGNNN_multi.bed.gz
464.09 kB
demux_NNNNTCGAGNNN_unique.bed.gz
54.57 kB
demux_NNNNTCGAGNNN_unique.bedgraph
199.11 kB
iCount reads proxy
m6a_ctrl_4h_20180106_ju-2_unmapped.fastq.gz
12.75 MB
fastqc
Directory
m6a_ctrl_4h_20180106_ju-2_unmapped_fastqc.zip
458.38 kB
stderr.txt
1.32 kB
iCount peaks
m6A_NoQ_24H_20180106_JU_1Rep_grouped_peaks.bed.gz
290.87 kB
m6A_NoQ_24H_20180106_JU_1Rep_grouped_scores.tsv.gz
1.84 MB
m6A_NoQ_24H_20180106_JU_1Rep_grouped_peaks.bedgraph
1.08 MB
iCount summary
m6a_ctrl_4h_20180106_ju-2_unmapped_single_summary_type.tsv
453 B
m6a_ctrl_4h_20180106_ju-2_unmapped_single_summary_subtype.tsv
1002 B
m6a_ctrl_4h_20180106_ju-2_unmapped_single_summary_gene.tsv
539.18 kB
STAR
igg_rabbit_igg_20180106_ju-2_unmapped.bam
3.70 MB
igg_rabbit_igg_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
1.31 MB
igg_rabbit_igg_20180106_ju-2_unmapped_stats.txt
1.79 kB
igg_rabbit_igg_20180106_ju-2_unmapped.bam.bai
1.44 MB
igg_rabbit_igg_20180106_ju-2_unmapped_SJ.out.tab
4.06 kB
igg_rabbit_igg_20180106_ju-2_unmapped.bw
18.16 kB
STAR
m6a-786o-ctrl-15-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
6.26 MB
m6a-786o-ctrl-15-20180106-ju_trimmed.bam.bai
19.23 kB
m6a-786o-ctrl-15-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-15-20180106-ju_trimmed.bam
39.84 MB
m6a-786o-ctrl-15-20180106-ju_trimmed.bw
105.67 kB
m6a-786o-ctrl-15-20180106-ju_trimmed_SJ.out.tab
0 B
STAR
m6a_786o_ctrl-15min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
21.40 MB
m6a_786o_ctrl-15min_20180413_ju_unmapped.bam.bai
1.72 MB
m6a_786o_ctrl-15min_20180413_ju_unmapped.bam
64.28 MB
m6a_786o_ctrl-15min_20180413_ju_unmapped_stats.txt
1.80 kB
m6a_786o_ctrl-15min_20180413_ju_unmapped.bw
21.38 kB
m6a_786o_ctrl-15min_20180413_ju_unmapped_SJ.out.tab
35.16 kB
iCount summary
m6a_noq_4h_20180106_ju-2_unmapped_single_summary_type.tsv
457 B
m6a_noq_4h_20180106_ju-2_unmapped_single_summary_subtype.tsv
1006 B
m6a_noq_4h_20180106_ju-2_unmapped_single_summary_gene.tsv
632.22 kB
iCount xlsites
demux_NNNNGCTTGCGTNNNNN_unique.bed.gz
129.79 kB
demux_NNNNGCTTGCGTNNNNN_multi.bed.gz
1.11 MB
demux_NNNNGCTTGCGTNNNNN_skipped.bam
403.22 kB
demux_NNNNGCTTGCGTNNNNN_unique.bedgraph
464.91 kB
Paraclu
peaks.bed.gz
814 B
iCount RNA-maps
results.tar.gz
455.43 kB
iCount RNA-maps
results.tar.gz
288.86 kB
iCount RNA-maps
results.tar.gz
461.71 kB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
1.17 kB
iCount RNA-maps
results.tar.gz
449.04 kB
iCount xlsites
demux_NNNNGTAGANNN_trimmed_singleAndMulti.bed.gz
3.02 MB
demux_NNNNGTAGANNN_trimmed_single.bed.gz
740.70 kB
demux_NNNNGTAGANNN_trimmed_single.bedgraph
2.88 MB
demux_NNNNGTAGANNN_trimmed_skipped.bam
7.04 kB
Paraclu
peaks.bed.gz
3.22 kB
Paraclu
peaks.bed.gz
35 B
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNCATTTNNN_trimmed.fastq.gz
23.93 MB
demux_NNNNCATTTNNN_trimmed_fastqc.zip
448.78 kB
iCount xlsites
m6a_786o_ctrl-4h_20180413_ju_unmapped_skipped.bam
2.93 kB
m6a_786o_ctrl-4h_20180413_ju_unmapped_singleAndMulti.bed.gz
260.14 kB
m6a_786o_ctrl-4h_20180413_ju_unmapped_reads_single.bed.gz
49.52 kB
m6a_786o_ctrl-4h_20180413_ju_unmapped_single.bed.gz
44.36 kB
m6a_786o_ctrl-4h_20180413_ju_unmapped_single.bedgraph
152.23 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.38 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
684.71 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
273.08 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
113 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.88 kB
iCount summary
m6a_noq_3_20180106_ju-2_unmapped_single_summary_subtype.tsv
998 B
m6a_noq_3_20180106_ju-2_unmapped_single_summary_gene.tsv
329.61 kB
m6a_noq_3_20180106_ju-2_unmapped_single_summary_type.tsv
453 B
iCount summary
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single_summary_subtype.tsv
1021 B
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single_summary_gene.tsv
268.25 kB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single_summary_type.tsv
460 B
iCount RNA-maps
results.tar.gz
310.04 kB
iCount summary
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
262 B
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
634 B
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
215.55 kB
Cutadapt (single-end)
demux_NNNNATCTGTGCNNNNN_trimmed_fastqc.zip
400.48 kB
demux_NNNNATCTGTGCNNNNN_trimmed.fastq.gz
24.69 MB
fastqc
Directory
report.txt
673 B
STAR
demux_NNNNTCACANNN_unmapped.out.mate1.fastq.gz
13.01 MB
demux_NNNNTCACANNN.bam
265.26 MB
demux_NNNNTCACANNN.bam.bai
2.69 MB
demux_NNNNTCACANNN_SJ.out.tab
143.39 kB
demux_NNNNTCACANNN_stats.txt
1.80 kB
iCount RNA-maps
results.tar.gz
460.10 kB
iCount RNA-maps
results.tar.gz
407.12 kB
iCount summary
m6a_ctrl_3_20180106_ju-2_unmapped_single_summary_type.tsv
455 B
m6a_ctrl_3_20180106_ju-2_unmapped_single_summary_gene.tsv
288.73 kB
m6a_ctrl_3_20180106_ju-2_unmapped_single_summary_subtype.tsv
1000 B
STAR
m62a_786o_noq-4h_20180413_ju_unmapped.bam.bai
1.81 MB
m62a_786o_noq-4h_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
31.95 MB
m62a_786o_noq-4h_20180413_ju_unmapped_stats.txt
1.80 kB
m62a_786o_noq-4h_20180413_ju_unmapped_SJ.out.tab
48.40 kB
m62a_786o_noq-4h_20180413_ju_unmapped.bam
96.77 MB
m62a_786o_noq-4h_20180413_ju_unmapped.bw
23.06 kB
Paraclu
peaks.bed.gz
89 B
STAR
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed.bam.bai
19.02 kB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
8.41 MB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed.bam
52.80 MB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed.bw
105.78 kB
iCount RNA-maps
results.tar.gz
428.51 kB
iCount RNA-maps
results.tar.gz
365.83 kB
iCount xlsites
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single.bed.gz
2.22 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_singleAndMulti.bed.gz
3.91 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_skipped.bam
3.50 kB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single.bedgraph
10.41 MB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed.fastq.gz
41.58 MB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed_fastqc.zip
545.75 kB
report.txt
703 B
iCount summary
demux_NNNNGCTCTNNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
demux_NNNNGCTCTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNGCTCTNNN_trimmed_single_summary.tsv_summary_gene.tsv
526.32 kB
iCount annotate
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_annotated.bedgraph
218.86 kB
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_annotated.bed.gz
77.83 kB
iCount RNA-maps
results.tar.gz
287.19 kB
iCount reads proxy
m62a_786o_ctrl-4h_20180413_ju_unmapped.fastq.gz
52.89 MB
fastqc
Directory
stderr.txt
1.40 kB
m62a_786o_ctrl-4h_20180413_ju_unmapped_fastqc.zip
535.73 kB
iCount RNA-maps
results.tar.gz
320.37 kB
iCount summary
igg_rabbit_igg_20180106_ju-2_unmapped_single_summary_type.tsv
436 B
igg_rabbit_igg_20180106_ju-2_unmapped_single_summary_subtype.tsv
845 B
igg_rabbit_igg_20180106_ju-2_unmapped_single_summary_gene.tsv
14.10 kB
iCount reads proxy
stderr.txt
1.44 kB
fastqc
Directory
igg_786o_rabbit-igg_20180413_ju_unmapped_fastqc.zip
518.20 kB
igg_786o_rabbit-igg_20180413_ju_unmapped.fastq.gz
6.43 MB
Paraclu
peaks.bed.gz
693 B
iCount RNA-maps
results.tar.gz
365.37 kB
Paraclu
peaks.bed.gz
144 B
iCount summary
m6a_786o_noq-4h_20180413_ju_unmapped_single_summary_type.tsv
458 B
m6a_786o_noq-4h_20180413_ju_unmapped_single_summary_subtype.tsv
1016 B
m6a_786o_noq-4h_20180413_ju_unmapped_single_summary_gene.tsv
302.80 kB
Paraclu
peaks.bed.gz
364 B
iCount RNA-maps
results.tar.gz
405.23 kB
Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
304.69 kB
iCount xlsites
m6A_786O_NoQ4H_20180106_JU_unmapped_single.bed.gz
2.44 MB
m6A_786O_NoQ4H_20180106_JU_unmapped_skipped.bam
3.54 kB
m6A_786O_NoQ4H_20180106_JU_unmapped_singleAndMulti.bed.gz
4.48 MB
m6A_786O_NoQ4H_20180106_JU_unmapped_single.bedgraph
11.47 MB
STAR
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.bam
112.91 MB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
46.48 MB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.bw
22.06 kB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.bam.bai
1.86 MB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_stats.txt
1.80 kB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_SJ.out.tab
69.30 kB
iCount reads proxy
fastqc
Directory
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.fastq.gz
55.51 MB
stderr.txt
1.66 kB
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_fastqc.zip
538.94 kB
iCount reads proxy
fastqc
Directory
m1a-786o-20180420-jufastqgz_unmapped.fastq.gz
47.07 MB
stderr.txt
1.36 kB
m1a-786o-20180420-jufastqgz_unmapped_fastqc.zip
527.45 kB
iCount reads proxy
m1a_786o_ctrl-4h_20180413_ju_unmapped.fastq.gz
77.94 MB
m1a_786o_ctrl-4h_20180413_ju_unmapped_fastqc.zip
547.74 kB
fastqc
Directory
stderr.txt
1.38 kB
iCount summary
m1a_786o_ctrl-4h_20180413_ju_unmapped_single_summary_subtype.tsv
1.00 kB
m1a_786o_ctrl-4h_20180413_ju_unmapped_single_summary_gene.tsv
315.77 kB
m1a_786o_ctrl-4h_20180413_ju_unmapped_single_summary_type.tsv
460 B
Paraclu
peaks.bed.gz
3.80 kB
iCount RNA-maps
results.tar.gz
294.15 kB
Paraclu
peaks.bed.gz
5.47 kB
iCount reads proxy
fastqc
Directory
m1a_786o_ctrl-3min_20180413_ju_unmapped.fastq.gz
19.80 MB
stderr.txt
1.42 kB
m1a_786o_ctrl-3min_20180413_ju_unmapped_fastqc.zip
557.14 kB
iCount summary
m62a_786o_noq-4h_20180413_ju_unmapped_single_summary_gene.tsv
162.32 kB
m62a_786o_noq-4h_20180413_ju_unmapped_single_summary_type.tsv
452 B
m62a_786o_noq-4h_20180413_ju_unmapped_single_summary_subtype.tsv
1010 B
iCount reads proxy
fastqc
Directory
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_fastqc.zip
564.31 kB
stderr.txt
1.64 kB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped.fastq.gz
21.36 MB
iCount summary
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_gene.tsv
361.86 kB
Paraclu
peaks.bed.gz
4.52 kB
Paraclu
peaks.bed.gz
766 B
iCount RNA-maps
results.tar.gz
354.82 kB
STAR
demux_NNNNCACAGNNN.bam.bai
4.20 MB
demux_NNNNCACAGNNN.bam
772.88 MB
demux_NNNNCACAGNNN_unmapped.out.mate1.fastq.gz
11.81 MB
demux_NNNNCACAGNNN_SJ.out.tab
697.97 kB
demux_NNNNCACAGNNN_stats.txt
1.80 kB
iCount RNA-maps
results.tar.gz
384.45 kB
iCount RNA-maps
results.tar.gz
250.88 kB
Paraclu
peaks.bed.gz
416 B
iCount RNA-maps
results.tar.gz
261.92 kB
iCount RNA-maps
results.tar.gz
319.99 kB
Paraclu
peaks.bed.gz
509 B
iCount reads proxy
m1a_786o_noq-3min_20180413_ju_unmapped.fastq.gz
25.44 MB
m1a_786o_noq-3min_20180413_ju_unmapped_fastqc.zip
557.45 kB
fastqc
Directory
stderr.txt
1.40 kB
Paraclu
peaks.bed.gz
35 B
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGTTTCNNN_fastqc.zip
442.31 kB
demux_NNNNGTTTCNNN.fastq.gz
38.61 MB
iCount RNA-maps
results.tar.gz
392.72 kB
iCount summary
m1a_786o_noq-3min_20180413_ju_unmapped_single_summary_subtype.tsv
682 B
m1a_786o_noq-3min_20180413_ju_unmapped_single_summary_type.tsv
447 B
m1a_786o_noq-3min_20180413_ju_unmapped_single_summary_gene.tsv
48.26 kB
iCount RNA-maps
results.tar.gz
161.91 kB
Paraclu
peaks.bed.gz
150 B
STAR
m1a_786o_ctrl-15min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
25.69 MB
m1a_786o_ctrl-15min_20180413_ju_unmapped.bam
63.99 MB
m1a_786o_ctrl-15min_20180413_ju_unmapped.bam.bai
1.73 MB
m1a_786o_ctrl-15min_20180413_ju_unmapped_SJ.out.tab
43.08 kB
m1a_786o_ctrl-15min_20180413_ju_unmapped_stats.txt
1.80 kB
m1a_786o_ctrl-15min_20180413_ju_unmapped.bw
20.92 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
685 B
demux_NNNNCCTGCNNN_trimmed_fastqc.zip
461.81 kB
demux_NNNNCCTGCNNN_trimmed.fastq.gz
139.70 MB
iCount summary
m62a_786o_noq-15min_20180413_ju_unmapped_single_summary_type.tsv
451 B
m62a_786o_noq-15min_20180413_ju_unmapped_single_summary_subtype.tsv
1007 B
m62a_786o_noq-15min_20180413_ju_unmapped_single_summary_gene.tsv
202.38 kB
iCount RNA-maps
results.tar.gz
367.42 kB
Cutadapt (single-end)
report.txt
695 B
fastqc
Directory
m6a-786o-noq-3-20180106-ju_trimmed.fastq.gz
61.26 MB
m6a-786o-noq-3-20180106-ju_trimmed_fastqc.zip
459.98 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
demux_NNNNGCTTGAGGNNNNN_trimmed.fastq.gz
21.70 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_fastqc.zip
387.14 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
demux_NNNNGCTTGAGGNNNNN_trimmed_fastqc.zip
393.63 kB
demux_NNNNGCTTGAGGNNNNN_trimmed.fastq.gz
21.71 MB
Paraclu
peaks.bed.gz
760 B
iCount RNA-maps
results.tar.gz
270.91 kB
Paraclu
peaks.bed.gz
834 B
iCount RNA-maps
results.tar.gz
302.85 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNTCATCNNN_trimmed.fastq.gz
50.33 MB
report.txt
685 B
demux_NNNNTCATCNNN_trimmed_fastqc.zip
515.41 kB
STAR
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
8.51 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped.bam.bai
3.16 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped.bam
71.98 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_stats.txt
1.80 kB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped.bw
35.99 kB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_SJ.out.tab
852.87 kB
Cutadapt (single-end)
report.txt
685 B
fastqc
Directory
demux_NNNNTCGAGNNN_trimmed.fastq.gz
71.14 MB
demux_NNNNTCGAGNNN_trimmed_fastqc.zip
464.87 kB
STAR
demux_NNNNGCTCTNNN_trimmed.bam.bai
3.16 MB
demux_NNNNGCTCTNNN_trimmed_unmapped.out.mate1.fastq.gz
9.17 MB
demux_NNNNGCTCTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTCTNNN_trimmed_SJ.out.tab
97.67 kB
demux_NNNNGCTCTNNN_trimmed.bam
180.72 MB
Paraclu
peaks.bed.gz
955 B
STAR
m6a-786o-20180420-jufastqgz_unmapped.bam
61.09 MB
m6a-786o-20180420-jufastqgz_unmapped.bam.bai
2.06 MB
m6a-786o-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-20180420-jufastqgz_unmapped.bw
25.98 kB
m6a-786o-20180420-jufastqgz_unmapped_SJ.out.tab
139.39 kB
m6a-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
17.31 MB
iCount RNA-maps
results.tar.gz
56.02 kB
iCount summary
m1a-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
460 B
m1a-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
1.00 kB
m1a-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
363.88 kB
Paraclu
peaks.bed.gz
5.10 kB
iCount RNA-maps
results.tar.gz
353.36 kB
iCount reads proxy
fastqc
Directory
m6a-786o-20180420-jufastqgz_unmapped.fastq.gz
23.64 MB
stderr.txt
1.36 kB
m6a-786o-20180420-jufastqgz_unmapped_fastqc.zip
525.12 kB
iCount xlsites
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_skipped.bam
3.85 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
455.21 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bed.gz
99.83 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_reads_single.bed.gz
105.07 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bedgraph
359.38 kB
iCount xlsites
demux_NNNNATCTGTTANNNNN_trimmed_singleAndMulti.bed.gz
1.29 MB
demux_NNNNATCTGTTANNNNN_trimmed_single.bed.gz
163.27 kB
demux_NNNNATCTGTTANNNNN_trimmed_single.bedgraph
593.94 kB
demux_NNNNATCTGTTANNNNN_trimmed_skipped.bam
3.05 kB
Cutadapt (single-end)
report.txt
685 B
fastqc
Directory
demux_NNNNGGAGCNNN_trimmed.fastq.gz
168.57 MB
demux_NNNNGGAGCNNN_trimmed_fastqc.zip
463.52 kB
iCount reads proxy
fastqc
Directory
m62a_786o_ctrl-15min_20180413_ju_unmapped.fastq.gz
71.22 MB
stderr.txt
1.46 kB
m62a_786o_ctrl-15min_20180413_ju_unmapped_fastqc.zip
522.23 kB
iCount RNA-maps
results.tar.gz
326.51 kB
iCount RNA-maps
results.tar.gz
420.59 kB
Cutadapt (single-end)
demux_NNNNGCTTGNNN_trimmed.fastq.gz
86.06 MB
fastqc
Directory
demux_NNNNGCTTGNNN_trimmed_fastqc.zip
521.03 kB
report.txt
686 B
Paraclu
peaks.bed.gz
35 B
Cutadapt (single-end)
fastqc
Directory
demux_NNNNATCCANNN_trimmed.fastq.gz
446.61 MB
report.txt
687 B
demux_NNNNATCCANNN_trimmed_fastqc.zip
474.60 kB
Cutadapt (single-end)
demux_NNNNGTAACNNN_trimmed.fastq.gz
265.43 MB
fastqc
Directory
demux_NNNNGTAACNNN_trimmed_fastqc.zip
506.17 kB
report.txt
687 B
iCount summary
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
1018 B
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_gene.tsv
239.72 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_type.tsv
459 B
STAR
m6a_ctrl_3_20180106_ju-2_unmapped.bam.bai
1.75 MB
m6a_ctrl_3_20180106_ju-2_unmapped.bam
17.21 MB
m6a_ctrl_3_20180106_ju-2_unmapped_stats.txt
1.79 kB
m6a_ctrl_3_20180106_ju-2_unmapped_unmapped.out.mate1.fastq.gz
4.28 MB
m6a_ctrl_3_20180106_ju-2_unmapped_SJ.out.tab
63.44 kB
m6a_ctrl_3_20180106_ju-2_unmapped.bw
22.04 kB
STAR
m62a_786o_noq-15min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
41.13 MB
m62a_786o_noq-15min_20180413_ju_unmapped.bam.bai
1.88 MB
m62a_786o_noq-15min_20180413_ju_unmapped.bam
136.82 MB
m62a_786o_noq-15min_20180413_ju_unmapped_stats.txt
1.81 kB
m62a_786o_noq-15min_20180413_ju_unmapped_SJ.out.tab
62.20 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNTCACANNN_trimmed.fastq.gz
318.06 MB
report.txt
687 B
demux_NNNNTCACANNN_trimmed_fastqc.zip
471.78 kB
iCount summary
demux_NNNNTGCGTNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNTGCGTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNTGCGTNNN_trimmed_single_summary.tsv_summary_gene.tsv
579.56 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNCCTGCNNN_trimmed.fastq.gz
235.63 MB
demux_NNNNCCTGCNNN_trimmed_fastqc.zip
480.26 kB
iCount RNA-maps
results.tar.gz
459.37 kB
iCount peaks
m1A_786O_NoQ 4H_2Reps_grouped_scores.tsv.gz
326.24 kB
m1A_786O_NoQ 4H_2Reps_grouped_peaks.bedgraph
133.91 kB
m1A_786O_NoQ 4H_2Reps_grouped_peaks.bed.gz
60.51 kB
STAR
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
32.50 MB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.bam
104.96 MB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.bam.bai
1.82 MB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_stats.txt
1.80 kB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.bw
22.97 kB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_SJ.out.tab
49.22 kB
STAR
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped.bam
112.77 MB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_stats.txt
1.81 kB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
37.25 MB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped.bam.bai
1.83 MB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped.bw
23.01 kB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_SJ.out.tab
49.01 kB
iCount summary
demux_NNNNTCATCNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNTCATCNNN_unique_summary.tsv_summary_gene.tsv
657.04 kB
demux_NNNNTCATCNNN_unique_summary.tsv_summary_subtype.tsv
641 B
iCount reads proxy
fastqc
Directory
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped.fastq.gz
32.48 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_fastqc.zip
429.92 kB
stderr.txt
1.50 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNGCTCTNNN_trimmed_fastqc.zip
453.24 kB
demux_NNNNGCTCTNNN_trimmed.fastq.gz
27.55 MB
STAR
m1a_786o_ctrl-3min_20180413_ju_unmapped_SJ.out.tab
8.84 kB
m1a_786o_ctrl-3min_20180413_ju_unmapped_stats.txt
1.80 kB
m1a_786o_ctrl-3min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
16.90 MB
m1a_786o_ctrl-3min_20180413_ju_unmapped.bam.bai
1.53 MB
m1a_786o_ctrl-3min_20180413_ju_unmapped.bam
37.53 MB
m1a_786o_ctrl-3min_20180413_ju_unmapped.bw
18.26 kB
STAR
m1a_786o_noq-15min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
59.16 MB
m1a_786o_noq-15min_20180413_ju_unmapped.bam
144.78 MB
m1a_786o_noq-15min_20180413_ju_unmapped_stats.txt
1.81 kB
m1a_786o_noq-15min_20180413_ju_unmapped.bam.bai
1.92 MB
m1a_786o_noq-15min_20180413_ju_unmapped.bw
22.72 kB
m1a_786o_noq-15min_20180413_ju_unmapped_SJ.out.tab
79.83 kB
iCount xlsites
demux_NNNNCTGTANNN_unique.bed.gz
117.57 kB
demux_NNNNCTGTANNN_skipped.bam
689.92 kB
demux_NNNNCTGTANNN_multi.bed.gz
826.47 kB
demux_NNNNCTGTANNN_unique.bedgraph
429.35 kB
STAR
m1a_786o_noq-3min_20180413_ju_unmapped.bam.bai
1.54 MB
m1a_786o_noq-3min_20180413_ju_unmapped.bam
48.55 MB
m1a_786o_noq-3min_20180413_ju_unmapped_SJ.out.tab
11.00 kB
m1a_786o_noq-3min_20180413_ju_unmapped_stats.txt
1.80 kB
m1a_786o_noq-3min_20180413_ju_unmapped.bw
18.60 kB
m1a_786o_noq-3min_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
21.68 MB
iCount xlsites
demux_NNNNAGTTANNN_skipped.bam
6.42 MB
demux_NNNNAGTTANNN_unique.bed.gz
1.97 MB
demux_NNNNAGTTANNN_multi.bed.gz
5.69 MB
demux_NNNNAGTTANNN_unique.bedgraph
8.92 MB
iCount annotate
IgG_786O__20180420_JU_IgG_grouped_annotated.bed.gz
183.19 kB
IgG_786O__20180420_JU_IgG_grouped_annotated.bedgraph
457.36 kB
STAR
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
1.83 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
9.00 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.49 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
12.13 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
18.88 kB
Reads (single-end)
GAM660A1-A37_S1_L001_R1_001.fastq.gz
16.66 GB
fastqc
Directory
GAM660A1-A37_S1_L001_R1_001_fastqc.zip
469.98 kB
stderr.txt
1.13 kB
STAR
demux_NNNNTCGAGNNN_unmapped.out.mate1.fastq.gz
32.97 MB
demux_NNNNTCGAGNNN.bam.bai
1.83 MB
demux_NNNNTCGAGNNN.bam
262.14 MB
demux_NNNNTCGAGNNN_SJ.out.tab
23.25 kB
demux_NNNNTCGAGNNN_stats.txt
1.81 kB
STAR
demux_NNNNTGCGTNNN_trimmed_unmapped.out.mate1.fastq.gz
15.23 MB
demux_NNNNTGCGTNNN_trimmed.bam.bai
3.50 MB
demux_NNNNTGCGTNNN_trimmed.bam
218.72 MB
demux_NNNNTGCGTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTGCGTNNN_trimmed_SJ.out.tab
120.30 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNTGCGTNNN_trimmed.fastq.gz
36.69 MB
demux_NNNNTGCGTNNN_trimmed_fastqc.zip
454.75 kB
report.txt
670 B
iCount xlsites
m6A_786O_Ctrl4H_20180106_JU_unmapped_single.bed.gz
1.81 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_singleAndMulti.bed.gz
3.34 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_single.bedgraph
8.40 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_skipped.bam
3.12 kB
STAR
m6a_786o_ctrl-4h_20180413_ju_unmapped_unmapped.out.mate1.fastq.gz
15.28 MB
m6a_786o_ctrl-4h_20180413_ju_unmapped.bam.bai
1.74 MB
m6a_786o_ctrl-4h_20180413_ju_unmapped_stats.txt
1.80 kB
m6a_786o_ctrl-4h_20180413_ju_unmapped_SJ.out.tab
42.91 kB
m6a_786o_ctrl-4h_20180413_ju_unmapped.bw
21.57 kB
m6a_786o_ctrl-4h_20180413_ju_unmapped.bam
48.88 MB
STAR
m6A_786O_Ctrl4H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
9.41 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_SJ.out.tab
653.23 kB
m6A_786O_Ctrl4H_20180106_JU_unmapped_stats.txt
1.81 kB
m6A_786O_Ctrl4H_20180106_JU_unmapped.bam
72.18 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped.bam.bai
3.17 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped.bw
32.40 kB
iCount summary
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
321.30 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
Cutadapt (single-end)
report.txt
672 B
fastqc
Directory
demux_NNNNGCTTGCTGNNNNN_trimmed_fastqc.zip
416.34 kB
demux_NNNNGCTTGCTGNNNNN_trimmed.fastq.gz
18.15 MB
STAR
demux_NNNNGCTTGCTGNNNNN_trimmed.bam
106.81 MB
demux_NNNNGCTTGCTGNNNNN_trimmed.bam.bai
2.63 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
5.61 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_SJ.out.tab
48.60 kB
STAR
m6a-786o-ctrl-4h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
33.37 MB
m6a-786o-ctrl-4h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-4h-20180106-ju_trimmed.bam
176.21 MB
m6a-786o-ctrl-4h-20180106-ju_trimmed.bw
106.58 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNGCTTGCTGNNNNN_fastqc.zip
400.86 kB
demux_NNNNGCTTGCTGNNNNN.fastq.gz
17.81 MB
Reads (single-end)
fastqc
Directory
demux_NNNNAGACTNNN.fastq.gz
23.94 MB
stderr.txt
975 B
demux_NNNNAGACTNNN_fastqc.zip
444.68 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGCGTNNN_fastqc.zip
497.73 kB
demux_NNNNTGCGTNNN.fastq.gz
44.28 MB
stderr.txt
975 B
Reads (single-end)
fastqc
Directory
m6a-786o-ctrl-4h-20180106-ju.fastq.gz
111.82 MB
stderr.txt
1.15 kB
m6a-786o-ctrl-4h-20180106-ju_fastqc.zip
444.76 kB
STAR
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bam.bai
1.84 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
20.44 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bam
58.43 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_SJ.out.tab
71.62 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bw
23.03 kB
Reads (single-end)
m6a-786o-noq-dm-akg-24h-20180106-ju.fastq.gz
110.62 MB
fastqc
Directory
m6a-786o-noq-dm-akg-24h-20180106-ju_fastqc.zip
448.04 kB
stderr.txt
1.28 kB
Reads (single-end)
demux_NNNNATCTGAGGNNNNN_fastqc.zip
428.29 kB
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATCTGAGGNNNNN.fastq.gz
29.09 MB
iCount summary
m6a-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
269 B
m6a-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
647 B
m6a-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
1.06 MB
Reads (single-end)
fastqc
Directory
stderr.txt
1.26 kB
m6a-786o-noq-dm-akg-4h-20180106-ju.fastq.gz
120.20 MB
m6a-786o-noq-dm-akg-4h-20180106-ju_fastqc.zip
444.34 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.17 kB
m6a-786o-ctrl-24h-20180106-ju.fastq.gz
58.96 MB
m6a-786o-ctrl-24h-20180106-ju_fastqc.zip
438.37 kB
Reads (single-end)
fastqc
Directory
m6a-786o-noq-15-20180106-ju_fastqc.zip
558.78 kB
m6a-786o-noq-15-20180106-ju.fastq.gz
36.23 MB
stderr.txt
1.13 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGTTANNNNN.fastq.gz
34.11 MB
demux_NNNNGCTTGTTANNNNN_fastqc.zip
390.26 kB
stderr.txt
1.05 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAAGTNNN.fastq.gz
45.02 MB
demux_NNNNCAAGTNNN_fastqc.zip
468.59 kB
stderr.txt
975 B
Reads (single-end)
m6a-786o-noq-24h-20180106-ju.fastq.gz
93.00 MB
fastqc
Directory
stderr.txt
1.21 kB
m6a-786o-noq-24h-20180106-ju_fastqc.zip
451.30 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGTATTNNN.fastq.gz
73.14 MB
stderr.txt
975 B
demux_NNNNGTATTNNN_fastqc.zip
502.88 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAGGCANNN.fastq.gz
106.17 MB
demux_NNNNAGGCANNN_fastqc.zip
473.10 kB
stderr.txt
975 B
iCount annotate
m1A_786O__20180420_JU_1Rep_grouped_annotated.bedgraph
2.68 MB
m1A_786O__20180420_JU_1Rep_grouped_annotated.bed.gz
963.61 kB
STAR
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
12.92 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bw
25.18 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bam.bai
1.96 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_SJ.out.tab
111.95 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bam
45.33 MB
Reads (single-end)
fastqc
Directory
stderr.txt
1.21 kB
igg-786o-rabbit-igg-20180106-ju.fastq.gz
13.95 MB
igg-786o-rabbit-igg-20180106-ju_fastqc.zip
511.72 kB
iCount summary
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_summary.tsv_summary_gene.tsv
550.21 kB
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_summary.tsv_summary_subtype.tsv
643 B
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_summary.tsv_summary_type.tsv
268 B
Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNGCTTGAGGNNNNN.fastq.gz
21.18 MB
demux_NNNNGCTTGAGGNNNNN_fastqc.zip
389.69 kB
Reads (single-end)
demux_NNNNCATTTNNN.fastq.gz
27.63 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNCATTTNNN_fastqc.zip
475.82 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGATTNNNNN.fastq.gz
37.66 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGATTNNNNN_fastqc.zip
403.00 kB
iCount summary
m1A_786O_Ctrl 4H_2Reps_grouped_summary.tsv_summary_type.tsv
266 B
m1A_786O_Ctrl 4H_2Reps_grouped_summary.tsv_summary_subtype.tsv
645 B
m1A_786O_Ctrl 4H_2Reps_grouped_summary.tsv_summary_gene.tsv
601.26 kB
iCount xlsites
m6a_ctrl_4h_20180106_ju-2_unmapped_skipped.bam
3.13 kB
m6a_ctrl_4h_20180106_ju-2_unmapped_singleAndMulti.bed.gz
576.54 kB
m6a_ctrl_4h_20180106_ju-2_unmapped_reads_single.bed.gz
151.91 kB
m6a_ctrl_4h_20180106_ju-2_unmapped_single.bedgraph
535.08 kB
m6a_ctrl_4h_20180106_ju-2_unmapped_single.bed.gz
142.52 kB
iCount peaks
m1A_786O_Ctrl 4H_2Reps_grouped_peaks.bed.gz
84.02 kB
m1A_786O_Ctrl 4H_2Reps_grouped_peaks.bedgraph
191.22 kB
m1A_786O_Ctrl 4H_2Reps_grouped_scores.tsv.gz
467.10 kB
Reads (single-end)
demux_NNNNACCTTNNN.fastq.gz
44.16 MB
fastqc
Directory
demux_NNNNACCTTNNN_fastqc.zip
482.14 kB
stderr.txt
975 B
iCount annotate
m1A_786O_Ctrl 4H_2Reps_grouped_annotated.bedgraph
1.53 MB
m1A_786O_Ctrl 4H_2Reps_grouped_annotated.bed.gz
552.26 kB
iCount RNA-maps
results.tar.gz
460.63 kB
iCount peaks
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_scores.tsv.gz
410.31 kB
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_peaks.bedgraph
162.52 kB
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_peaks.bed.gz
73.22 kB
iCount xlsites
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_singleAndMulti.bed.gz
47.49 kB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_single.bed.gz
5.38 kB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_skipped.bam
2.93 kB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_reads_single.bed.gz
5.90 kB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_single.bedgraph
17.21 kB
iCount annotate
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_annotated.bedgraph
1.32 MB
m1A_786O_NoQ plus DM-Akg 4H_2Reps_grouped_annotated.bed.gz
478.86 kB
iCount summary
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_single_summary_gene.tsv
26.00 kB
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_single_summary_type.tsv
446 B
m6a_noq__dm-akg_15_20180106_ju-2_unmapped_single_summary_subtype.tsv
917 B
iCount xlsites
m6a_noq_3_20180106_ju-2_unmapped_single.bed.gz
77.63 kB
m6a_noq_3_20180106_ju-2_unmapped_skipped.bam
3.44 kB
m6a_noq_3_20180106_ju-2_unmapped_singleAndMulti.bed.gz
374.30 kB
m6a_noq_3_20180106_ju-2_unmapped_single.bedgraph
278.21 kB
m6a_noq_3_20180106_ju-2_unmapped_reads_single.bed.gz
82.41 kB
iCount annotate
m1A_NoQ_15min_2Reps_grouped_annotated.bed.gz
485.12 kB
m1A_NoQ_15min_2Reps_grouped_annotated.bedgraph
1.33 MB
iCount peaks
test_m6A_786O_NoQ4hrs_2reps_grouped_peaks.bedgraph
2.21 MB
test_m6A_786O_NoQ4hrs_2reps_grouped_peaks.bed.gz
577.02 kB
test_m6A_786O_NoQ4hrs_2reps_grouped_scores.tsv.gz
2.97 MB
iCount xlsites
m6a_noq_24h_20180106_ju-2_unmapped_singleAndMulti.bed.gz
575.88 kB
m6a_noq_24h_20180106_ju-2_unmapped_skipped.bam
3.69 kB
m6a_noq_24h_20180106_ju-2_unmapped_single.bed.gz
140.83 kB
m6a_noq_24h_20180106_ju-2_unmapped_reads_single.bed.gz
148.18 kB
m6a_noq_24h_20180106_ju-2_unmapped_single.bedgraph
531.81 kB
iCount summary
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_summary.tsv_summary_subtype.tsv
646 B
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_summary.tsv_summary_gene.tsv
513.36 kB
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_summary.tsv_summary_type.tsv
267 B
iCount peaks
demux_NNNNTGTGGNNN_unique_peaks.bedgraph
25.43 kB
demux_NNNNTGTGGNNN_unique_scores.tsv.gz
61.27 kB
demux_NNNNTGTGGNNN_unique_peaks.bed.gz
13.11 kB
iCount annotate
test_m6A_786O_NoQ4hrs_2reps_grouped_annotated.bed.gz
4.61 MB
test_m6A_786O_NoQ4hrs_2reps_grouped_annotated.bedgraph
15.96 MB
iCount peaks
demux_NNNNCTGTANNN_unique_peaks.bed.gz
55.74 kB
demux_NNNNCTGTANNN_unique_scores.tsv.gz
300.22 kB
demux_NNNNCTGTANNN_unique_peaks.bedgraph
122.77 kB
iCount peaks
demux_NNNNGTTTCNNN_unique_peaks.bed.gz
60.26 kB
demux_NNNNGTTTCNNN_unique_peaks.bedgraph
122.20 kB
demux_NNNNGTTTCNNN_unique_scores.tsv.gz
448.09 kB
iCount peaks
test_m6A_786O_NoQ15min_2Reps_grouped_peaks.bed.gz
68.45 kB
test_m6A_786O_NoQ15min_2Reps_grouped_scores.tsv.gz
501.34 kB
test_m6A_786O_NoQ15min_2Reps_grouped_peaks.bedgraph
141.40 kB
iCount xlsites
igg_786o_rabbit-igg_20180413_ju_unmapped_skipped.bam
2.93 kB
igg_786o_rabbit-igg_20180413_ju_unmapped_singleAndMulti.bed.gz
116.59 kB
igg_786o_rabbit-igg_20180413_ju_unmapped_single.bed.gz
15.41 kB
igg_786o_rabbit-igg_20180413_ju_unmapped_single.bedgraph
51.06 kB
igg_786o_rabbit-igg_20180413_ju_unmapped_reads_single.bed.gz
17.25 kB
iCount peaks
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_peaks.bed.gz
66.71 kB
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_peaks.bedgraph
148.94 kB
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_scores.tsv.gz
373.81 kB
iCount summary
igg_786o_rabbit-igg_20180413_ju_unmapped_single_summary_type.tsv
440 B
igg_786o_rabbit-igg_20180413_ju_unmapped_single_summary_subtype.tsv
923 B
igg_786o_rabbit-igg_20180413_ju_unmapped_single_summary_gene.tsv
57.15 kB
iCount annotate
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_annotated.bedgraph
1.19 MB
m1A_786O_NoQ plus DM-Akg 15min_2Reps_grouped_annotated.bed.gz
432.55 kB
iCount peaks
demux_NNNNCAGAANNN_unique_scores.tsv.gz
392.58 kB
demux_NNNNCAGAANNN_unique_peaks.bedgraph
121.91 kB
demux_NNNNCAGAANNN_unique_peaks.bed.gz
57.43 kB
iCount peaks
m1A_NoQ_15min_2Reps_grouped_peaks.bed.gz
74.37 kB
m1A_NoQ_15min_2Reps_grouped_peaks.bedgraph
166.79 kB
m1A_NoQ_15min_2Reps_grouped_scores.tsv.gz
414.19 kB
iCount xlsites
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_reads_single.bed.gz
172.60 kB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_singleAndMulti.bed.gz
629.25 kB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_single.bed.gz
163.88 kB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_single.bedgraph
622.68 kB
m6a_noq__dm-akg_24h_20180106_ju-2_unmapped_skipped.bam
3.40 kB
iCount peaks
demux_NNNNGGAGCNNN_unique_peaks.bed.gz
108.35 kB
demux_NNNNGGAGCNNN_unique_scores.tsv.gz
893.86 kB
demux_NNNNGGAGCNNN_unique_peaks.bedgraph
274.46 kB
iCount peaks
m1A_786O__20180420_JU_1Rep_grouped_scores.tsv.gz
752.85 kB
m1A_786O__20180420_JU_1Rep_grouped_peaks.bedgraph
293.77 kB
m1A_786O__20180420_JU_1Rep_grouped_peaks.bed.gz
123.54 kB
iCount peaks
m1A_Ctrl_15min_2Reps_grouped_scores.tsv.gz
261.67 kB
m1A_Ctrl_15min_2Reps_grouped_peaks.bedgraph
101.94 kB
m1A_Ctrl_15min_2Reps_grouped_peaks.bed.gz
46.15 kB
iCount peaks
demux_NNNNTCGAGNNN_unique_scores.tsv.gz
67.35 kB
demux_NNNNTCGAGNNN_unique_peaks.bed.gz
13.31 kB
demux_NNNNTCGAGNNN_unique_peaks.bedgraph
27.45 kB
iCount peaks
m1A_786O_10Reps_grouped_scores.tsv.gz
1.50 MB
m1A_786O_10Reps_grouped_peaks.bed.gz
253.88 kB
m1A_786O_10Reps_grouped_peaks.bedgraph
658.03 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
685 B
demux_NNNNAGTCCNNN_trimmed.fastq.gz
145.73 MB
demux_NNNNAGTCCNNN_trimmed_fastqc.zip
469.04 kB
iCount summary
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
265 B
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
636 B
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
834.18 kB
iCount annotate
m6A_NoQ+DM-Akg_4hrs_2Reps_grouped_annotated.bedgraph
14.08 MB
m6A_NoQ+DM-Akg_4hrs_2Reps_grouped_annotated.bed.gz
4.12 MB
iCount peaks
demux_NNNNAGTTANNN_unique_scores.tsv.gz
450.52 kB
demux_NNNNAGTTANNN_unique_peaks.bed.gz
80.53 kB
demux_NNNNAGTTANNN_unique_peaks.bedgraph
183.08 kB
iCount peaks
demux_NNNNATACGNNN_unique_peaks.bed.gz
16.19 kB
demux_NNNNATACGNNN_unique_peaks.bedgraph
34.14 kB
demux_NNNNATACGNNN_unique_scores.tsv.gz
79.50 kB
Paraclu
peaks.bed.gz
1.00 kB
iCount peaks
demux_NNNNTCATCNNN_unique_scores.tsv.gz
486.84 kB
demux_NNNNTCATCNNN_unique_peaks.bed.gz
74.96 kB
demux_NNNNTCATCNNN_unique_peaks.bedgraph
150.51 kB
iCount xlsites
m62a_786o_ctrl-4h_20180413_ju_unmapped_single.bed.gz
64.73 kB
m62a_786o_ctrl-4h_20180413_ju_unmapped_skipped.bam
4.44 kB
m62a_786o_ctrl-4h_20180413_ju_unmapped_singleAndMulti.bed.gz
373.67 kB
m62a_786o_ctrl-4h_20180413_ju_unmapped_single.bedgraph
225.63 kB
m62a_786o_ctrl-4h_20180413_ju_unmapped_reads_single.bed.gz
72.64 kB
iCount peaks
demux_NNNNTGAAANNN_unique_peaks.bed.gz
48.78 kB
demux_NNNNTGAAANNN_unique_peaks.bedgraph
102.22 kB
demux_NNNNTGAAANNN_unique_scores.tsv.gz
344.23 kB
iCount summary
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
266 B
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
642 B
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
644.84 kB
iCount peaks
demux_NNNNATCCANNN_unique_scores.tsv.gz
442.97 kB
demux_NNNNATCCANNN_unique_peaks.bedgraph
135.99 kB
demux_NNNNATCCANNN_unique_peaks.bed.gz
62.78 kB
iCount peaks
demux_NNNNCCTGCNNN_unique_peaks.bed.gz
56.54 kB
demux_NNNNCCTGCNNN_unique_scores.tsv.gz
520.83 kB
demux_NNNNCCTGCNNN_unique_peaks.bedgraph
123.67 kB
iCount summary
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
636 B
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
671.12 kB
m6A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
264 B
iCount peaks
m6A_Ctrl_4hrs_2Reps_grouped_peaks.bed.gz
323.43 kB
m6A_Ctrl_4hrs_2Reps_grouped_scores.tsv.gz
2.16 MB
m6A_Ctrl_4hrs_2Reps_grouped_peaks.bedgraph
1.15 MB
iCount annotate
m6A_NoQ_15min_20180106_JU_1Rep_grouped_annotated.bed.gz
61.50 kB
m6A_NoQ_15min_20180106_JU_1Rep_grouped_annotated.bedgraph
145.60 kB
iCount xlsites
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single.bed.gz
44.60 kB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_skipped.bam
3.31 kB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_singleAndMulti.bed.gz
244.61 kB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_reads_single.bed.gz
49.36 kB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single.bedgraph
152.50 kB
iCount peaks
demux_NNNNTCGCCNNN_unique_peaks.bed.gz
42.29 kB
demux_NNNNTCGCCNNN_unique_peaks.bedgraph
93.73 kB
demux_NNNNTCGCCNNN_unique_scores.tsv.gz
235.44 kB
iCount peaks
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_peaks.bed.gz
107.69 kB
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_peaks.bedgraph
271.05 kB
m6A_786O_NoQ 4H_20180413_JU_1Rep_grouped_scores.tsv.gz
894.07 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
685 B
demux_NNNNGTAACNNN_trimmed_fastqc.zip
458.19 kB
demux_NNNNGTAACNNN_trimmed.fastq.gz
142.09 MB
iCount xlsites
m62a_786o_ctrl-15min_20180413_ju_unmapped_single.bed.gz
80.03 kB
m62a_786o_ctrl-15min_20180413_ju_unmapped_single.bedgraph
282.81 kB
m62a_786o_ctrl-15min_20180413_ju_unmapped_singleAndMulti.bed.gz
455.73 kB
m62a_786o_ctrl-15min_20180413_ju_unmapped_reads_single.bed.gz
89.88 kB
m62a_786o_ctrl-15min_20180413_ju_unmapped_skipped.bam
5.29 kB
iCount peaks
m6A_NoQ+DM-Akg_15min_2reps_grouped_peaks.bed.gz
77.60 kB
m6A_NoQ+DM-Akg_15min_2reps_grouped_peaks.bedgraph
159.94 kB
m6A_NoQ+DM-Akg_15min_2reps_grouped_scores.tsv.gz
526.96 kB
iCount summary
m62a_786o_ctrl-15min_20180413_ju_unmapped_single_summary_subtype.tsv
1015 B
m62a_786o_ctrl-15min_20180413_ju_unmapped_single_summary_gene.tsv
246.70 kB
m62a_786o_ctrl-15min_20180413_ju_unmapped_single_summary_type.tsv
456 B
iCount peaks
demux_NNNNTATGANNN_unique_peaks.bed.gz
70.17 kB
demux_NNNNTATGANNN_unique_scores.tsv.gz
391.36 kB
demux_NNNNTATGANNN_unique_peaks.bedgraph
155.46 kB
Cutadapt (single-end)
report.txt
687 B
fastqc
Directory
demux_NNNNCAGAANNN_trimmed.fastq.gz
374.05 MB
demux_NNNNCAGAANNN_trimmed_fastqc.zip
471.97 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNTCCACNNN_trimmed.fastq.gz
46.63 MB
report.txt
686 B
demux_NNNNTCCACNNN_trimmed_fastqc.zip
497.63 kB
iCount xlsites
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
32.08 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
109.49 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
33.49 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
170.11 kB
Cutadapt (single-end)
demux_NNNNGTAGANNN_trimmed.fastq.gz
496.85 MB
fastqc
Directory
demux_NNNNGTAGANNN_trimmed_fastqc.zip
461.05 kB
report.txt
687 B
iCount xlsites
igg-786o-20180420-jufastqgz_unmapped_skipped.bam
2.93 kB
igg-786o-20180420-jufastqgz_unmapped_reads_single.bed.gz
9.70 kB
igg-786o-20180420-jufastqgz_unmapped_single.bed.gz
8.67 kB
igg-786o-20180420-jufastqgz_unmapped_single.bedgraph
28.23 kB
igg-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
68.90 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNTCATCNNN_trimmed.fastq.gz
363.54 MB
demux_NNNNTCATCNNN_trimmed_fastqc.zip
476.06 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNAACTCNNN_trimmed_fastqc.zip
477.84 kB
demux_NNNNAACTCNNN_trimmed.fastq.gz
335.76 MB
Cutadapt (single-end)
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
10.31 MB
fastqc
Directory
report.txt
744 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
535.63 kB
iCount xlsites
m6a_786o_noq-15min_20180413_ju_unmapped_single.bed.gz
43.89 kB
m6a_786o_noq-15min_20180413_ju_unmapped_singleAndMulti.bed.gz
235.53 kB
m6a_786o_noq-15min_20180413_ju_unmapped_skipped.bam
3.90 kB
m6a_786o_noq-15min_20180413_ju_unmapped_single.bedgraph
149.63 kB
m6a_786o_noq-15min_20180413_ju_unmapped_reads_single.bed.gz
48.53 kB
iCount RNA-maps
results.tar.gz
380.51 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNTATGANNN_trimmed.fastq.gz
276.05 MB
demux_NNNNTATGANNN_trimmed_fastqc.zip
511.97 kB
iCount xlsites
m6a_ctrl_15_20180106_ju-2_unmapped_skipped.bam
2.93 kB
m6a_ctrl_15_20180106_ju-2_unmapped_reads_single.bed.gz
4.77 kB
m6a_ctrl_15_20180106_ju-2_unmapped_singleAndMulti.bed.gz
38.15 kB
m6a_ctrl_15_20180106_ju-2_unmapped_single.bed.gz
4.39 kB
m6a_ctrl_15_20180106_ju-2_unmapped_single.bedgraph
14.08 kB
Paraclu
peaks.bed.gz
35 B
Cutadapt (single-end)
fastqc
Directory
igg-786o-20180420-jufastqgz_unmapped_trimmed.fastq.gz
9.68 MB
igg-786o-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
533.90 kB
report.txt
704 B
iCount xlsites
m6a_noq_4h_20180106_ju-2_unmapped_single.bed.gz
183.47 kB
m6a_noq_4h_20180106_ju-2_unmapped_skipped.bam
3.56 kB
m6a_noq_4h_20180106_ju-2_unmapped_single.bedgraph
694.54 kB
m6a_noq_4h_20180106_ju-2_unmapped_reads_single.bed.gz
195.67 kB
m6a_noq_4h_20180106_ju-2_unmapped_singleAndMulti.bed.gz
681.75 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
685 B
demux_NNNNGTTTCNNN_trimmed.fastq.gz
39.55 MB
demux_NNNNGTTTCNNN_trimmed_fastqc.zip
510.17 kB
iCount summary
demux_NNNNCTGTANNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNCTGTANNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNCTGTANNN_unique_summary.tsv_summary_gene.tsv
329.05 kB
Cutadapt (single-end)
report.txt
687 B
fastqc
Directory
demux_NNNNGGAGCNNN_trimmed.fastq.gz
423.91 MB
demux_NNNNGGAGCNNN_trimmed_fastqc.zip
483.13 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNCTGTANNN_trimmed.fastq.gz
193.45 MB
report.txt
687 B
demux_NNNNCTGTANNN_trimmed_fastqc.zip
514.35 kB
iCount xlsites
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_single.bed.gz
74.13 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_reads_single.bed.gz
83.18 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_singleAndMulti.bed.gz
381.17 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_single.bedgraph
259.58 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_skipped.bam
3.79 kB
iCount peaks
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_peaks.bed.gz
65.10 kB
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_scores.tsv.gz
471.06 kB
m6A_786O_NoQ 15min_20180413_JU_1Rep_grouped_peaks.bedgraph
130.94 kB
Cutadapt (single-end)
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
1.22 MB
fastqc
Directory
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
639.51 kB
report.txt
745 B
Cutadapt (single-end)
demux_NNNNAGTTANNN_trimmed.fastq.gz
369.68 MB
fastqc
Directory
report.txt
687 B
demux_NNNNAGTTANNN_trimmed_fastqc.zip
507.62 kB
iCount summary
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
633.72 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
266 B
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
635 B
Cutadapt (single-end)
fastqc
Directory
report.txt
744 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
8.53 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
532.69 kB
iCount xlsites
m1a_786o_noq-4h_20180413_ju_unmapped_skipped.bam
3.68 kB
m1a_786o_noq-4h_20180413_ju_unmapped_reads_single.bed.gz
91.35 kB
m1a_786o_noq-4h_20180413_ju_unmapped_singleAndMulti.bed.gz
359.82 kB
m1a_786o_noq-4h_20180413_ju_unmapped_single.bed.gz
85.64 kB
m1a_786o_noq-4h_20180413_ju_unmapped_single.bedgraph
303.82 kB
Cutadapt (single-end)
demux_NNNNCACAGNNN_trimmed.fastq.gz
96.75 MB
fastqc
Directory
demux_NNNNCACAGNNN_trimmed_fastqc.zip
463.20 kB
report.txt
685 B
Cutadapt (single-end)
fastqc
Directory
m1a-786o-20180420-jufastqgz_unmapped_trimmed.fastq.gz
96.98 MB
report.txt
705 B
m1a-786o-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
508.45 kB
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
demux_NNNNCCGGANNN_trimmed.fastq.gz
25.97 MB
demux_NNNNCCGGANNN_trimmed_fastqc.zip
484.02 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
743 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
495.61 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
9.10 MB
iCount xlsites
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
140.26 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
26.87 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
28.09 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
91.42 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGGGNNN.fastq.gz
74.94 MB
stderr.txt
975 B
demux_NNNNCAGGGNNN_fastqc.zip
469.43 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
685 B
demux_NNNNAACTCNNN_trimmed.fastq.gz
44.15 MB
demux_NNNNAACTCNNN_trimmed_fastqc.zip
527.66 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNGTTTCNNN_trimmed.fastq.gz
322.84 MB
demux_NNNNGTTTCNNN_trimmed_fastqc.zip
475.10 kB
report.txt
687 B
iCount xlsites
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_single.bed.gz
14.59 kB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_skipped.bam
2.93 kB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_reads_single.bed.gz
16.17 kB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_singleAndMulti.bed.gz
68.05 kB
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_single.bedgraph
48.42 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNTCGCCNNN_trimmed.fastq.gz
76.04 MB
report.txt
685 B
demux_NNNNTCGCCNNN_trimmed_fastqc.zip
461.08 kB
iCount xlsites
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_skipped.bam
3.57 kB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_singleAndMulti.bed.gz
453.84 kB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_single.bedgraph
364.93 kB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_reads_single.bed.gz
106.62 kB
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_single.bed.gz
100.17 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
687 B
demux_NNNNTGAAANNN_trimmed.fastq.gz
294.19 MB
demux_NNNNTGAAANNN_trimmed_fastqc.zip
475.17 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
498.67 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.fastq.gz
89.10 MB
report.txt
711 B
iCount xlsites
m6a_786o_noq-4h_20180413_ju_unmapped_singleAndMulti.bed.gz
410.07 kB
m6a_786o_noq-4h_20180413_ju_unmapped_skipped.bam
3.37 kB
m6a_786o_noq-4h_20180413_ju_unmapped_reads_single.bed.gz
89.82 kB
m6a_786o_noq-4h_20180413_ju_unmapped_single.bed.gz
79.78 kB
m6a_786o_noq-4h_20180413_ju_unmapped_single.bedgraph
280.60 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNAGTTANNN_trimmed.fastq.gz
16.57 MB
report.txt
684 B
demux_NNNNAGTTANNN_trimmed_fastqc.zip
515.70 kB
Cutadapt (single-end)
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
634.76 kB
fastqc
Directory
report.txt
745 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
553.45 kB
iCount xlsites
igg_786o_mouse-igg_20180413_ju_unmapped_singleAndMulti.bed.gz
146.05 kB
igg_786o_mouse-igg_20180413_ju_unmapped_reads_single.bed.gz
17.40 kB
igg_786o_mouse-igg_20180413_ju_unmapped_skipped.bam
3.24 kB
igg_786o_mouse-igg_20180413_ju_unmapped_single.bed.gz
15.95 kB
igg_786o_mouse-igg_20180413_ju_unmapped_single.bedgraph
53.45 kB
Paraclu
peaks.bed.gz
169 B
Paraclu
peaks.bed.gz
421 B
Cutadapt (single-end)
report.txt
686 B
fastqc
Directory
demux_NNNNTCGCCNNN_trimmed.fastq.gz
145.56 MB
demux_NNNNTCGCCNNN_trimmed_fastqc.zip
511.58 kB
iCount summary
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
635 B
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
633.72 kB
m6A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
266 B
iCount RNA-maps
results.tar.gz
562.78 kB
iCount xlsites
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_singleAndMulti.bed.gz
333.38 kB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single.bed.gz
53.33 kB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_reads_single.bed.gz
59.52 kB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single.bedgraph
185.41 kB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_skipped.bam
2.93 kB
iCount summary
demux_NNNNTATGANNN_unique_summary.tsv_summary_subtype.tsv
627 B
demux_NNNNTATGANNN_unique_summary.tsv_summary_gene.tsv
428.49 kB
demux_NNNNTATGANNN_unique_summary.tsv_summary_type.tsv
262 B
STAR
demux_NNNNCACAGNNN_unmapped.out.mate1.fastq.gz
81.90 MB
demux_NNNNCACAGNNN_stats.txt
1.81 kB
demux_NNNNCACAGNNN.bam
1.72 GB
demux_NNNNCACAGNNN.bam.bai
2.26 MB
demux_NNNNCACAGNNN_SJ.out.tab
51.17 kB
iCount xlsites
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_singleAndMulti.bed.gz
335.75 kB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single.bed.gz
57.56 kB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_reads_single.bed.gz
64.42 kB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_skipped.bam
3.17 kB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single.bedgraph
200.55 kB
iCount xlsites
demux_NNNNTATGANNN_unique.bed.gz
212.66 kB
demux_NNNNTATGANNN_multi.bed.gz
790.22 kB
demux_NNNNTATGANNN_skipped.bam
1.59 MB
demux_NNNNTATGANNN_unique.bedgraph
785.88 kB
iCount summary
demux_NNNNACCTTNNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNACCTTNNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNACCTTNNN_unique_summary.tsv_summary_gene.tsv
542.88 kB
iCount xlsites
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
10.56 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
11.46 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
84.16 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
34.65 kB
iCount summary
m6a_noq_24h_20180106_ju-2_unmapped_single_summary_type.tsv
456 B
m6a_noq_24h_20180106_ju-2_unmapped_single_summary_subtype.tsv
1004 B
m6a_noq_24h_20180106_ju-2_unmapped_single_summary_gene.tsv
515.14 kB
iCount RNA-maps
results.tar.gz
325.83 kB
iCount summary
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_single_summary_gene.tsv
287.81 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_single_summary_subtype.tsv
1018 B
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_single_summary_type.tsv
458 B
iCount summary
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_single_summary_type.tsv
457 B
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_single_summary_gene.tsv
581.40 kB
m6a_noq__dm-akg_4h_20180106_ju-2_unmapped_single_summary_subtype.tsv
1002 B
Paraclu
peaks.bed.gz
866 B
iCount summary
m1a_786o_ctrl-3min_20180413_ju_unmapped_single_summary_gene.tsv
42.63 kB
m1a_786o_ctrl-3min_20180413_ju_unmapped_single_summary_type.tsv
450 B
m1a_786o_ctrl-3min_20180413_ju_unmapped_single_summary_subtype.tsv
683 B
iCount summary
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single_summary_type.tsv
453 B
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single_summary_gene.tsv
182.42 kB
m62a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_single_summary_subtype.tsv
1008 B
iCount summary
m62a_786o_ctrl-4h_20180413_ju_unmapped_single_summary_type.tsv
454 B
m62a_786o_ctrl-4h_20180413_ju_unmapped_single_summary_subtype.tsv
943 B
m62a_786o_ctrl-4h_20180413_ju_unmapped_single_summary_gene.tsv
200.43 kB
iCount summary
m6a_786o_noq-15min_20180413_ju_unmapped_single_summary_gene.tsv
164.71 kB
m6a_786o_noq-15min_20180413_ju_unmapped_single_summary_subtype.tsv
998 B
m6a_786o_noq-15min_20180413_ju_unmapped_single_summary_type.tsv
452 B
STAR
demux_NNNNCAGAANNN_trimmed.bam.bai
4.48 MB
demux_NNNNCAGAANNN_trimmed_unmapped.out.mate1.fastq.gz
52.89 MB
demux_NNNNCAGAANNN_trimmed.bam
2.78 GB
demux_NNNNCAGAANNN_trimmed_SJ.out.tab
154.66 kB
demux_NNNNCAGAANNN_trimmed_stats.txt
1.81 kB
iCount summary
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
803 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
446 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
87.81 kB
iCount summary
m6a_786o_ctrl-4h_20180413_ju_unmapped_single_summary_type.tsv
451 B
m6a_786o_ctrl-4h_20180413_ju_unmapped_single_summary_subtype.tsv
1004 B
m6a_786o_ctrl-4h_20180413_ju_unmapped_single_summary_gene.tsv
174.09 kB
iCount summary
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
419 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
4.44 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
567 B
Paraclu
peaks.bed.gz
35 B
iCount summary
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_single_summary_type.tsv
448 B
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_single_summary_subtype.tsv
813 B
m1a_786o_noq-plus-dm-akg-3min_20180413_ju_unmapped_single_summary_gene.tsv
39.76 kB
iCount summary
m6a_ctrl_24h_20180106_ju-2_unmapped_single_summary_type.tsv
455 B
m6a_ctrl_24h_20180106_ju-2_unmapped_single_summary_subtype.tsv
1000 B
m6a_ctrl_24h_20180106_ju-2_unmapped_single_summary_gene.tsv
412.45 kB
STAR
demux_NNNNCCTGCNNN_trimmed.bam
1.19 GB
demux_NNNNCCTGCNNN_trimmed_unmapped.out.mate1.fastq.gz
12.75 MB
demux_NNNNCCTGCNNN_trimmed_SJ.out.tab
751.11 kB
demux_NNNNCCTGCNNN_trimmed.bam.bai
4.33 MB
demux_NNNNCCTGCNNN_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNAGTCCNNN_trimmed.bam.bai
4.53 MB
demux_NNNNAGTCCNNN_trimmed_unmapped.out.mate1.fastq.gz
13.84 MB
demux_NNNNAGTCCNNN_trimmed.bam
1.23 GB
demux_NNNNAGTCCNNN_trimmed_stats.txt
1.80 kB
demux_NNNNAGTCCNNN_trimmed_SJ.out.tab
835.37 kB
iCount summary
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single_summary_subtype.tsv
960 B
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single_summary_type.tsv
460 B
m1a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_single_summary_gene.tsv
225.97 kB
Paraclu
peaks.bed.gz
657 B
iCount summary
m1a_786o_ctrl-15min_20180413_ju_unmapped_single_summary_subtype.tsv
1017 B
m1a_786o_ctrl-15min_20180413_ju_unmapped_single_summary_gene.tsv
154.79 kB
m1a_786o_ctrl-15min_20180413_ju_unmapped_single_summary_type.tsv
456 B
STAR
demux_NNNNCATACNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCATACNNN_trimmed_unmapped.out.mate1.fastq.gz
11.03 MB
demux_NNNNCATACNNN_trimmed.bam.bai
4.16 MB
demux_NNNNCATACNNN_trimmed.bam
1.03 GB
demux_NNNNCATACNNN_trimmed_SJ.out.tab
781.67 kB
STAR
demux_NNNNTCATCNNN_trimmed_unmapped.out.mate1.fastq.gz
3.97 MB
demux_NNNNTCATCNNN_trimmed.bam.bai
2.03 MB
demux_NNNNTCATCNNN_trimmed.bam
347.51 MB
demux_NNNNTCATCNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCATCNNN_trimmed_SJ.out.tab
21.26 kB
STAR
demux_NNNNTCGAGNNN_trimmed.bam.bai
4.30 MB
demux_NNNNTCGAGNNN_trimmed.bam
633.89 MB
demux_NNNNTCGAGNNN_trimmed_SJ.out.tab
385.66 kB
demux_NNNNTCGAGNNN_trimmed_unmapped.out.mate1.fastq.gz
6.57 MB
demux_NNNNTCGAGNNN_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNGTAACNNN_trimmed_unmapped.out.mate1.fastq.gz
12.43 MB
demux_NNNNGTAACNNN_trimmed.bam.bai
4.28 MB
demux_NNNNGTAACNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTAACNNN_trimmed_SJ.out.tab
995.12 kB
demux_NNNNGTAACNNN_trimmed.bam
1.21 GB
STAR
demux_NNNNTCCACNNN_trimmed.bam
316.56 MB
demux_NNNNTCCACNNN_trimmed_SJ.out.tab
47.09 kB
demux_NNNNTCCACNNN_trimmed_unmapped.out.mate1.fastq.gz
6.43 MB
demux_NNNNTCCACNNN_trimmed.bam.bai
2.93 MB
demux_NNNNTCCACNNN_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNGTAGANNN_trimmed_stats.txt
1.81 kB
demux_NNNNGTAGANNN_trimmed.bam.bai
4.66 MB
demux_NNNNGTAGANNN_trimmed.bam
3.69 GB
demux_NNNNGTAGANNN_trimmed_SJ.out.tab
194.00 kB
demux_NNNNGTAGANNN_trimmed_unmapped.out.mate1.fastq.gz
71.22 MB
STAR
demux_NNNNTCATCNNN_trimmed_unmapped.out.mate1.fastq.gz
30.90 MB
demux_NNNNTCATCNNN_trimmed.bam
2.94 GB
demux_NNNNTCATCNNN_trimmed_stats.txt
1.81 kB
demux_NNNNTCATCNNN_trimmed_SJ.out.tab
196.51 kB
demux_NNNNTCATCNNN_trimmed.bam.bai
4.60 MB
iCount summary
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_gene.tsv
572.57 kB
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
STAR
demux_NNNNAACTCNNN_trimmed_unmapped.out.mate1.fastq.gz
29.79 MB
demux_NNNNAACTCNNN_trimmed.bam.bai
4.61 MB
demux_NNNNAACTCNNN_trimmed_stats.txt
1.81 kB
demux_NNNNAACTCNNN_trimmed_SJ.out.tab
185.79 kB
demux_NNNNAACTCNNN_trimmed.bam
2.74 GB
STAR
igg-786o-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
2.94 MB
igg-786o-20180420-jufastqgz_unmapped_trimmed.bam
31.88 MB
igg-786o-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed.bam.bai
2.31 MB
igg-786o-20180420-jufastqgz_unmapped_trimmed.bw
18.27 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
28.87 kB
STAR
demux_NNNNTATGANNN_trimmed_unmapped.out.mate1.fastq.gz
55.41 MB
demux_NNNNTATGANNN_trimmed.bam.bai
4.02 MB
demux_NNNNTATGANNN_trimmed_stats.txt
1.81 kB
demux_NNNNTATGANNN_trimmed_SJ.out.tab
124.11 kB
demux_NNNNTATGANNN_trimmed.bam
1.49 GB
STAR
demux_NNNNGTTTCNNN_trimmed.bam
263.62 MB
demux_NNNNGTTTCNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTTTCNNN_trimmed_unmapped.out.mate1.fastq.gz
3.15 MB
demux_NNNNGTTTCNNN_trimmed.bam.bai
1.89 MB
demux_NNNNGTTTCNNN_trimmed_SJ.out.tab
14.76 kB
STAR
demux_NNNNGGAGCNNN_trimmed_unmapped.out.mate1.fastq.gz
15.59 MB
demux_NNNNGGAGCNNN_trimmed.bam
1.42 GB
demux_NNNNGGAGCNNN_trimmed.bam.bai
4.53 MB
demux_NNNNGGAGCNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGGAGCNNN_trimmed_SJ.out.tab
939.07 kB
STAR
demux_NNNNAGTCCNNN_trimmed.bam.bai
4.81 MB
demux_NNNNAGTCCNNN_trimmed_unmapped.out.mate1.fastq.gz
34.03 MB
demux_NNNNAGTCCNNN_trimmed_stats.txt
1.81 kB
demux_NNNNAGTCCNNN_trimmed.bam
3.32 GB
demux_NNNNAGTCCNNN_trimmed_SJ.out.tab
325.50 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.58 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped_fastqc.zip
496.24 kB
m6a_786o_noq-plusdm-akg-4h_20180413_ju_unmapped.fastq.gz
34.03 MB
STAR
demux_NNNNGCTTGNNN_trimmed_unmapped.out.mate1.fastq.gz
21.36 MB
demux_NNNNGCTTGNNN_trimmed.bam
388.56 MB
demux_NNNNGCTTGNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGNNN_trimmed.bam.bai
2.46 MB
demux_NNNNGCTTGNNN_trimmed_SJ.out.tab
27.34 kB
STAR
demux_NNNNCTGTANNN_trimmed.bam.bai
3.68 MB
demux_NNNNCTGTANNN_trimmed.bam
1.01 GB
demux_NNNNCTGTANNN_trimmed_stats.txt
1.80 kB
demux_NNNNCTGTANNN_trimmed_unmapped.out.mate1.fastq.gz
41.97 MB
demux_NNNNCTGTANNN_trimmed_SJ.out.tab
92.94 kB
STAR
demux_NNNNGGAGCNNN_trimmed_unmapped.out.mate1.fastq.gz
39.61 MB
demux_NNNNGGAGCNNN_trimmed.bam
3.45 GB
demux_NNNNGGAGCNNN_trimmed_stats.txt
1.81 kB
demux_NNNNGGAGCNNN_trimmed_SJ.out.tab
340.86 kB
demux_NNNNGGAGCNNN_trimmed.bam.bai
4.85 MB
iCount annotate
demux_NNNNATACGNNN_unique_annotated.bed.gz
1.39 MB
demux_NNNNATACGNNN_unique_annotated.bedgraph
4.27 MB
STAR
demux_NNNNCACAGNNN_trimmed.bam.bai
4.25 MB
demux_NNNNCACAGNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCACAGNNN_trimmed_SJ.out.tab
486.79 kB
demux_NNNNCACAGNNN_trimmed.bam
851.08 MB
demux_NNNNCACAGNNN_trimmed_unmapped.out.mate1.fastq.gz
8.84 MB
STAR
m1a-786o-20180420-jufastqgz_unmapped_trimmed.bam.bai
3.90 MB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
47.07 MB
m1a-786o-20180420-jufastqgz_unmapped_trimmed.bam
262.79 MB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
214.27 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed.bw
27.12 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNAGTTANNN_trimmed_unmapped.out.mate1.fastq.gz
77.94 MB
demux_NNNNAGTTANNN_trimmed_stats.txt
1.81 kB
demux_NNNNAGTTANNN_trimmed.bam.bai
4.25 MB
demux_NNNNAGTTANNN_trimmed_SJ.out.tab
150.43 kB
demux_NNNNAGTTANNN_trimmed.bam
1.93 GB
STAR
demux_NNNNCCGGANNN_trimmed_unmapped.out.mate1.fastq.gz
3.59 MB
demux_NNNNCCGGANNN_trimmed.bam.bai
2.79 MB
demux_NNNNCCGGANNN_trimmed.bam
202.84 MB
demux_NNNNCCGGANNN_trimmed_SJ.out.tab
55.37 kB
demux_NNNNCCGGANNN_trimmed_stats.txt
1.79 kB
iCount reads proxy
fastqc
Directory
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
529.19 kB
stderr.txt
2.12 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
2.51 MB
STAR
demux_NNNNAACTCNNN_trimmed.bam
308.90 MB
demux_NNNNAACTCNNN_trimmed_SJ.out.tab
14.05 kB
demux_NNNNAACTCNNN_trimmed_unmapped.out.mate1.fastq.gz
3.45 MB
demux_NNNNAACTCNNN_trimmed.bam.bai
1.94 MB
demux_NNNNAACTCNNN_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNTCGCCNNN_trimmed_unmapped.out.mate1.fastq.gz
6.78 MB
demux_NNNNTCGCCNNN_trimmed.bam
664.49 MB
demux_NNNNTCGCCNNN_trimmed.bam.bai
3.82 MB
demux_NNNNTCGCCNNN_trimmed_SJ.out.tab
565.28 kB
demux_NNNNTCGCCNNN_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNGTTTCNNN_trimmed.bam.bai
4.51 MB
demux_NNNNGTTTCNNN_trimmed_SJ.out.tab
181.99 kB
demux_NNNNGTTTCNNN_trimmed_unmapped.out.mate1.fastq.gz
28.76 MB
demux_NNNNGTTTCNNN_trimmed_stats.txt
1.81 kB
demux_NNNNGTTTCNNN_trimmed.bam
2.54 GB
iCount summary
demux_NNNNCTGATNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNCTGATNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNCTGATNNN_unique_summary.tsv_summary_gene.tsv
123.77 kB
STAR
demux_NNNNAGTTANNN_trimmed_unmapped.out.mate1.fastq.gz
1.73 MB
demux_NNNNAGTTANNN_trimmed.bam
96.50 MB
demux_NNNNAGTTANNN_trimmed.bam.bai
1.86 MB
demux_NNNNAGTTANNN_trimmed_stats.txt
1.79 kB
demux_NNNNAGTTANNN_trimmed_SJ.out.tab
11.56 kB
iCount reads proxy
fastqc
Directory
m1a_786o_ctrl-15min_20180413_ju_unmapped.fastq.gz
30.99 MB
stderr.txt
1.44 kB
m1a_786o_ctrl-15min_20180413_ju_unmapped_fastqc.zip
546.57 kB
iCount reads proxy
fastqc
Directory
igg_rabbit_igg_20180106_ju-2_unmapped_fastqc.zip
556.66 kB
igg_rabbit_igg_20180106_ju-2_unmapped.fastq.gz
1.73 MB
stderr.txt
1.38 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
1.29 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
327.66 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
1.52 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
1.95 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
15.78 kB
STAR
demux_NNNNTGAAANNN_trimmed.bam.bai
4.29 MB
demux_NNNNTGAAANNN_trimmed_unmapped.out.mate1.fastq.gz
42.14 MB
demux_NNNNTGAAANNN_trimmed_stats.txt
1.81 kB
demux_NNNNTGAAANNN_trimmed.bam
2.07 GB
demux_NNNNTGAAANNN_trimmed_SJ.out.tab
129.29 kB
STAR
demux_NNNNGTAACNNN_trimmed.bam.bai
3.93 MB
demux_NNNNGTAACNNN_trimmed_unmapped.out.mate1.fastq.gz
55.51 MB
demux_NNNNGTAACNNN_trimmed_stats.txt
1.81 kB
demux_NNNNGTAACNNN_trimmed.bam
1.42 GB
demux_NNNNGTAACNNN_trimmed_SJ.out.tab
116.78 kB
iCount summary
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
411.43 kB
STAR
demux_NNNNTCGCCNNN_trimmed_unmapped.out.mate1.fastq.gz
30.99 MB
demux_NNNNTCGCCNNN_trimmed.bam.bai
3.39 MB
demux_NNNNTCGCCNNN_trimmed.bam
815.47 MB
demux_NNNNTCGCCNNN_trimmed_SJ.out.tab
72.87 kB
demux_NNNNTCGCCNNN_trimmed_stats.txt
1.80 kB
STAR
demux_NNNNATCCANNN_trimmed_unmapped.out.mate1.fastq.gz
55.74 MB
demux_NNNNATCCANNN_trimmed.bam
3.45 GB
demux_NNNNATCCANNN_trimmed.bam.bai
4.47 MB
demux_NNNNATCCANNN_trimmed_stats.txt
1.81 kB
demux_NNNNATCCANNN_trimmed_SJ.out.tab
185.01 kB
STAR
m6a-786o-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
23.64 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.81 kB
m6a-786o-20180420-jufastqgz_unmapped_trimmed.bam
661.38 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
751.17 kB
m6a-786o-20180420-jufastqgz_unmapped_trimmed.bam.bai
4.88 MB
STAR
demux_NNNNATACGNNN_trimmed_unmapped.out.mate1.fastq.gz
5.86 MB
demux_NNNNATACGNNN_trimmed.bam.bai
4.12 MB
demux_NNNNATACGNNN_trimmed.bam
609.79 MB
demux_NNNNATACGNNN_trimmed_stats.txt
1.80 kB
demux_NNNNATACGNNN_trimmed_SJ.out.tab
347.71 kB
iCount reads proxy
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.fastq.gz
17.60 MB
fastqc
Directory
stderr.txt
1.48 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_fastqc.zip
536.64 kB
STAR
demux_NNNNAGGCANNN_trimmed_unmapped.out.mate1.fastq.gz
49.08 MB
demux_NNNNAGGCANNN_trimmed.bam.bai
4.38 MB
demux_NNNNAGGCANNN_trimmed_SJ.out.tab
150.97 kB
demux_NNNNAGGCANNN_trimmed.bam
2.56 GB
demux_NNNNAGGCANNN_trimmed_stats.txt
1.81 kB
STAR
demux_NNNNTCACANNN_trimmed_unmapped.out.mate1.fastq.gz
43.99 MB
demux_NNNNTCACANNN_trimmed.bam.bai
4.31 MB
demux_NNNNTCACANNN_trimmed_stats.txt
1.81 kB
demux_NNNNTCACANNN_trimmed_SJ.out.tab
140.87 kB
demux_NNNNTCACANNN_trimmed.bam
2.29 GB
STAR
demux_NNNNTGTATNNN_trimmed.bam
369.68 MB
demux_NNNNTGTATNNN_trimmed.bam.bai
2.39 MB
demux_NNNNTGTATNNN_trimmed_unmapped.out.mate1.fastq.gz
19.80 MB
demux_NNNNTGTATNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTGTATNNN_trimmed_SJ.out.tab
22.18 kB
STAR
demux_NNNNCATACNNN_trimmed.bam.bai
4.13 MB
demux_NNNNCATACNNN_trimmed_SJ.out.tab
132.76 kB
demux_NNNNCATACNNN_trimmed_stats.txt
1.81 kB
demux_NNNNCATACNNN_trimmed.bam
1.82 GB
demux_NNNNCATACNNN_trimmed_unmapped.out.mate1.fastq.gz
70.87 MB
STAR
demux_NNNNCTGATNNN_trimmed_unmapped.out.mate1.fastq.gz
25.44 MB
demux_NNNNCTGATNNN_trimmed.bam
464.46 MB
demux_NNNNCTGATNNN_trimmed.bam.bai
2.55 MB
demux_NNNNCTGATNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCTGATNNN_trimmed_SJ.out.tab
29.16 kB
STAR
demux_NNNNCCTGCNNN_trimmed.bam
1.95 GB
demux_NNNNCCTGCNNN_trimmed_unmapped.out.mate1.fastq.gz
21.04 MB
demux_NNNNCCTGCNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCCTGCNNN_trimmed.bam.bai
4.31 MB
demux_NNNNCCTGCNNN_trimmed_SJ.out.tab
195.88 kB
STAR
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
2.98 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
1.94 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
35.54 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
13.36 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
17.17 kB
iCount reads proxy
fastqc
Directory
m6A_786O_NoQ+DM-Akg3'_20180106_JU_unmapped.fastq.gz
23.06 MB
stderr.txt
1.48 kB
m6A_786O_NoQ+DM-Akg3'_20180106_JU_unmapped_fastqc.zip
422.66 kB
STAR
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bam.bai
3.46 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.80 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
26.03 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bw
24.47 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bam
168.84 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
155.95 kB
iCount summary
IgG_786O_RabbitIgG_20180106_JU_unmapped_single_summary_subtype.tsv
580 B
IgG_786O_RabbitIgG_20180106_JU_unmapped_single_summary_gene.tsv
115.05 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_single_summary_type.tsv
257 B
STAR
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
17.60 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bam
487.68 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bam.bai
4.82 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.81 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
612.44 kB
iCount xlsites
demux_NNNNGTAACNNN_unique.bed.gz
2.52 MB
demux_NNNNGTAACNNN_skipped.bam
9.77 MB
demux_NNNNGTAACNNN_multi.bed.gz
5.97 MB
iCount xlsites
demux_NNNNCCTGCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCCTGCNNN_trimmed_single.bed.gz
2.33 MB
demux_NNNNCCTGCNNN_trimmed_reads_single.bed.gz
2.54 MB
demux_NNNNCCTGCNNN_trimmed_singleAndMulti.bed.gz
6.40 MB
demux_NNNNCCTGCNNN_trimmed_single.bedgraph
10.81 MB
iCount xlsites
demux_NNNNAGTCCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNAGTCCNNN_trimmed_singleAndMulti.bed.gz
7.65 MB
demux_NNNNAGTCCNNN_trimmed_single.bed.gz
2.69 MB
demux_NNNNAGTCCNNN_trimmed_reads_single.bed.gz
2.92 MB
demux_NNNNAGTCCNNN_trimmed_single.bedgraph
12.52 MB
iCount xlsites
demux_NNNNTCATCNNN_trimmed_single.bed.gz
67.36 kB
demux_NNNNTCATCNNN_trimmed_singleAndMulti.bed.gz
653.57 kB
demux_NNNNTCATCNNN_trimmed_single.bedgraph
244.15 kB
demux_NNNNTCATCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNTCATCNNN_trimmed_reads_single.bed.gz
77.68 kB
STAR
demux_NNNNGAATANNN_trimmed_unmapped.out.mate1.fastq.gz
20.78 MB
demux_NNNNGAATANNN_trimmed.bam.bai
3.76 MB
demux_NNNNGAATANNN_trimmed.bam
345.75 MB
demux_NNNNGAATANNN_trimmed_stats.txt
1.80 kB
demux_NNNNGAATANNN_trimmed_SJ.out.tab
150.41 kB
iCount reads proxy
m6a_noq_24h_20180106_ju-2_unmapped_fastqc.zip
458.10 kB
m6a_noq_24h_20180106_ju-2_unmapped.fastq.gz
11.03 MB
fastqc
Directory
stderr.txt
1.32 kB
iCount xlsites
demux_NNNNTCGAGNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNTCGAGNNN_trimmed_single.bed.gz
1.26 MB
demux_NNNNTCGAGNNN_trimmed_singleAndMulti.bed.gz
4.49 MB
demux_NNNNTCGAGNNN_trimmed_reads_single.bed.gz
1.38 MB
demux_NNNNTCGAGNNN_trimmed_single.bedgraph
5.62 MB
iCount reads proxy
fastqc
Directory
stderr.txt
1.28 kB
m6a_noq_3_20180106_ju-2_unmapped.fastq.gz
6.57 MB
m6a_noq_3_20180106_ju-2_unmapped_fastqc.zip
471.70 kB
iCount xlsites
demux_NNNNCATACNNN_trimmed_single.bed.gz
2.31 MB
demux_NNNNCATACNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCATACNNN_trimmed_single.bedgraph
10.79 MB
demux_NNNNCATACNNN_trimmed_reads_single.bed.gz
2.48 MB
demux_NNNNCATACNNN_trimmed_singleAndMulti.bed.gz
5.98 MB
Reads (single-end)
demux_nomatch.fastq.gz
899.99 MB
fastqc
Directory
stderr.txt
920 B
demux_nomatch_fastqc.zip
448.46 kB
iCount xlsites
demux_NNNNTCCACNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNTCCACNNN_trimmed_singleAndMulti.bed.gz
1.47 MB
demux_NNNNTCCACNNN_trimmed_single.bed.gz
134.08 kB
demux_NNNNTCCACNNN_trimmed_reads_single.bed.gz
153.19 kB
demux_NNNNTCCACNNN_trimmed_single.bedgraph
501.94 kB
iCount reads proxy
m6a_noq__dm-akg_3_20180106_ju-2_unmapped.fastq.gz
8.84 MB
fastqc
Directory
m6a_noq__dm-akg_3_20180106_ju-2_unmapped_fastqc.zip
457.45 kB
stderr.txt
1.44 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNGTAGANNN_trimmed_fastqc.zip
464.62 kB
demux_NNNNGTAGANNN_trimmed.fastq.gz
345.10 MB
report.txt
670 B
iCount xlsites
demux_NNNNGTAACNNN_trimmed_single.bed.gz
2.86 MB
demux_NNNNGTAACNNN_trimmed_singleAndMulti.bed.gz
7.28 MB
demux_NNNNGTAACNNN_trimmed_single.bedgraph
13.43 MB
demux_NNNNGTAACNNN_trimmed_reads_single.bed.gz
3.06 MB
demux_NNNNGTAACNNN_trimmed_skipped.bam
2.93 kB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
demux_NNNNGAATANNN_trimmed.fastq.gz
54.19 MB
demux_NNNNGAATANNN_trimmed_fastqc.zip
435.10 kB
iCount xlsites
demux_NNNNCAGAANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCAGAANNN_trimmed_single.bed.gz
424.07 kB
demux_NNNNCAGAANNN_trimmed_singleAndMulti.bed.gz
3.89 MB
demux_NNNNCAGAANNN_trimmed_reads_single.bed.gz
490.81 kB
demux_NNNNCAGAANNN_trimmed_single.bedgraph
1.63 MB
iCount summary
m6A_786O_NoQ24H_20180106_JU_unmapped_single_summary_gene.tsv
903.11 kB
m6A_786O_NoQ24H_20180106_JU_unmapped_single_summary_subtype.tsv
646 B
m6A_786O_NoQ24H_20180106_JU_unmapped_single_summary_type.tsv
269 B
iCount xlsites
demux_NNNNGTAGANNN_trimmed_single.bed.gz
530.34 kB
demux_NNNNGTAGANNN_trimmed_singleAndMulti.bed.gz
4.46 MB
demux_NNNNGTAGANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNGTAGANNN_trimmed_reads_single.bed.gz
617.21 kB
demux_NNNNGTAGANNN_trimmed_single.bedgraph
2.06 MB
iCount reads proxy
fastqc
Directory
stderr.txt
1.66 kB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_fastqc.zip
499.61 kB
m6a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.fastq.gz
30.90 MB
iCount xlsites
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
109.03 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
386.09 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
477.72 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
113.20 kB
iCount reads proxy
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
5.75 MB
fastqc
Directory
stderr.txt
2.14 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
510.07 kB
iCount xlsites
demux_NNNNTCATCNNN_trimmed_single.bed.gz
492.76 kB
demux_NNNNTCATCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNTCATCNNN_trimmed_single.bedgraph
1.93 MB
demux_NNNNTCATCNNN_trimmed_singleAndMulti.bed.gz
3.98 MB
demux_NNNNTCATCNNN_trimmed_reads_single.bed.gz
588.21 kB
iCount xlsites
igg-786o-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
520.90 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
123.33 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
107.45 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
387.50 kB
iCount reads proxy
fastqc
Directory
igg-786o-20180420-jufastqgz_unmapped_fastqc.zip
603.25 kB
igg-786o-20180420-jufastqgz_unmapped.fastq.gz
2.94 MB
stderr.txt
1.36 kB
iCount xlsites
demux_NNNNAACTCNNN_trimmed_singleAndMulti.bed.gz
3.94 MB
demux_NNNNAACTCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNAACTCNNN_trimmed_single.bed.gz
475.88 kB
demux_NNNNAACTCNNN_trimmed_reads_single.bed.gz
568.58 kB
demux_NNNNAACTCNNN_trimmed_single.bedgraph
1.86 MB
iCount reads proxy
fastqc
Directory
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped_fastqc.zip
548.79 kB
stderr.txt
1.60 kB
m1a_786o_noq-plus-dm-akg-4h_20180413_ju_unmapped.fastq.gz
55.41 MB
iCount reads proxy
m6a_ctrl_15_20180106_ju-2_unmapped.fastq.gz
3.15 MB
fastqc
Directory
m6a_ctrl_15_20180106_ju-2_unmapped_fastqc.zip
525.15 kB
stderr.txt
1.32 kB
iCount xlsites
demux_NNNNTATGANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNTATGANNN_trimmed_singleAndMulti.bed.gz
3.18 MB
demux_NNNNTATGANNN_trimmed_single.bed.gz
448.41 kB
demux_NNNNTATGANNN_trimmed_reads_single.bed.gz
482.30 kB
demux_NNNNTATGANNN_trimmed_single.bedgraph
1.72 MB
STAR
demux_NNNNAGTTANNN_unmapped.out.mate1.fastq.gz
78.91 MB
demux_NNNNAGTTANNN.bam
2.20 GB
demux_NNNNAGTTANNN.bam.bai
4.81 MB
demux_NNNNAGTTANNN_stats.txt
1.81 kB
demux_NNNNAGTTANNN_SJ.out.tab
766.00 kB
iCount xlsites
demux_NNNNGTTTCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNGTTTCNNN_trimmed_single.bedgraph
168.50 kB
demux_NNNNGTTTCNNN_trimmed_reads_single.bed.gz
54.83 kB
demux_NNNNGTTTCNNN_trimmed_singleAndMulti.bed.gz
525.67 kB
demux_NNNNGTTTCNNN_trimmed_single.bed.gz
47.49 kB
iCount reads proxy
fastqc
Directory
m6a_noq_4h_20180106_ju-2_unmapped.fastq.gz
15.59 MB
m6a_noq_4h_20180106_ju-2_unmapped_fastqc.zip
461.49 kB
stderr.txt
1.30 kB
iCount xlsites
demux_NNNNGGAGCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNGGAGCNNN_trimmed_single.bed.gz
3.09 MB
demux_NNNNGGAGCNNN_trimmed_reads_single.bed.gz
3.36 MB
demux_NNNNGGAGCNNN_trimmed_singleAndMulti.bed.gz
8.31 MB
demux_NNNNGGAGCNNN_trimmed_single.bedgraph
14.48 MB
iCount xlsites
demux_NNNNCTGTANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCTGTANNN_trimmed_singleAndMulti.bed.gz
2.52 MB
demux_NNNNCTGTANNN_trimmed_single.bedgraph
1.30 MB
demux_NNNNCTGTANNN_trimmed_reads_single.bed.gz
367.85 kB
demux_NNNNCTGTANNN_trimmed_single.bed.gz
343.27 kB
iCount reads proxy
m6a_ctrl_3_20180106_ju-2_unmapped.fastq.gz
5.86 MB
stderr.txt
1.30 kB
fastqc
Directory
m6a_ctrl_3_20180106_ju-2_unmapped_fastqc.zip
475.95 kB
iCount xlsites
demux_NNNNGCTTGNNN_trimmed_reads_single.bed.gz
85.67 kB
demux_NNNNGCTTGNNN_trimmed_single.bedgraph
286.65 kB
demux_NNNNGCTTGNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNGCTTGNNN_trimmed_singleAndMulti.bed.gz
904.27 kB
demux_NNNNGCTTGNNN_trimmed_single.bed.gz
77.07 kB
iCount reads proxy
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
935.54 kB
fastqc
Directory
stderr.txt
2.05 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
677.95 kB
iCount xlsites
demux_NNNNAGTCCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNAGTCCNNN_trimmed_singleAndMulti.bed.gz
5.47 MB
demux_NNNNAGTCCNNN_trimmed_reads_single.bed.gz
1.11 MB
demux_NNNNAGTCCNNN_trimmed_single.bed.gz
945.48 kB
demux_NNNNAGTCCNNN_trimmed_single.bedgraph
3.94 MB
iCount xlsites
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
96.92 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
430.11 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
100.93 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
341.10 kB
iCount reads proxy
fastqc
Directory
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
4.40 MB
stderr.txt
2.14 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
513.26 kB
iCount xlsites
m6A_786O_NoQ24H_20180106_JU_unmapped_skipped.bam
3.64 kB
m6A_786O_NoQ24H_20180106_JU_unmapped_singleAndMulti.bed.gz
3.15 MB
m6A_786O_NoQ24H_20180106_JU_unmapped_single.bed.gz
1.77 MB
m6A_786O_NoQ24H_20180106_JU_unmapped_single.bedgraph
8.25 MB
iCount xlsites
demux_NNNNCACAGNNN_trimmed_single.bed.gz
1.56 MB
demux_NNNNCACAGNNN_trimmed_singleAndMulti.bed.gz
4.88 MB
demux_NNNNCACAGNNN_trimmed_reads_single.bed.gz
1.70 MB
demux_NNNNCACAGNNN_trimmed_single.bedgraph
7.07 MB
demux_NNNNCACAGNNN_trimmed_skipped.bam
2.93 kB
iCount xlsites
m1a-786o-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
2.40 MB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
710.91 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
657.11 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
2.59 MB
iCount xlsites
demux_NNNNCTGTANNN_trimmed_single.bed.gz
124.81 kB
demux_NNNNCTGTANNN_trimmed_singleAndMulti.bed.gz
877.95 kB
demux_NNNNCTGTANNN_trimmed_single.bedgraph
457.36 kB
demux_NNNNCTGTANNN_trimmed_skipped.bam
2.91 kB
iCount xlsites
demux_NNNNGGAGCNNN_trimmed_single.bed.gz
991.43 kB
demux_NNNNGGAGCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNGGAGCNNN_trimmed_singleAndMulti.bed.gz
5.68 MB
demux_NNNNGGAGCNNN_trimmed_reads_single.bed.gz
1.16 MB
demux_NNNNGGAGCNNN_trimmed_single.bedgraph
4.14 MB
iCount xlsites
demux_NNNNCCGGANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNCCGGANNN_trimmed_single.bed.gz
163.40 kB
demux_NNNNCCGGANNN_trimmed_reads_single.bed.gz
182.30 kB
demux_NNNNCCGGANNN_trimmed_single.bedgraph
627.29 kB
demux_NNNNCCGGANNN_trimmed_singleAndMulti.bed.gz
1.44 MB
iCount reads proxy
fastqc
Directory
stderr.txt
1.49 kB
igg_786o_mouse-igg_20180413_ju_unmapped.fastq.gz
3.59 MB
igg_786o_mouse-igg_20180413_ju_unmapped_fastqc.zip
528.92 kB
iCount xlsites
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
294.41 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
118.33 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
385.66 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
104.70 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGTAACNNN_fastqc.zip
482.04 kB
demux_NNNNGTAACNNN.fastq.gz
271.16 MB
stderr.txt
975 B
iCount xlsites
demux_NNNNGTAACNNN_skipped.bam
5.41 MB
demux_NNNNGTAACNNN_unique.bed.gz
294.66 kB
demux_NNNNGTAACNNN_unique.bedgraph
1.11 MB
demux_NNNNGTAACNNN_multi.bed.gz
1.57 MB
iCount xlsites
demux_NNNNAACTCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNAACTCNNN_trimmed_single.bed.gz
53.47 kB
demux_NNNNAACTCNNN_trimmed_reads_single.bed.gz
61.71 kB
demux_NNNNAACTCNNN_trimmed_single.bedgraph
190.40 kB
demux_NNNNAACTCNNN_trimmed_singleAndMulti.bed.gz
558.62 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.30 kB
m6a_noq_15_20180106_ju-2_unmapped.fastq.gz
3.45 MB
m6a_noq_15_20180106_ju-2_unmapped_fastqc.zip
518.36 kB
STAR
demux_NNNNTCATCNNN.bam.bai
3.84 MB
demux_NNNNTCATCNNN_unmapped.out.mate1.fastq.gz
93.48 MB
demux_NNNNTCATCNNN.bam
2.35 GB
demux_NNNNTCATCNNN_stats.txt
1.81 kB
demux_NNNNTCATCNNN_SJ.out.tab
182.95 kB
iCount xlsites
demux_NNNNTCGCCNNN_trimmed_single.bed.gz
1.63 MB
demux_NNNNTCGCCNNN_trimmed_reads_single.bed.gz
1.75 MB
demux_NNNNTCGCCNNN_trimmed_singleAndMulti.bed.gz
4.35 MB
demux_NNNNTCGCCNNN_trimmed_single.bedgraph
7.50 MB
demux_NNNNTCGCCNNN_trimmed_skipped.bam
2.93 kB
STAR
demux_NNNNGATCGNNN.bam.bai
1.86 MB
demux_NNNNGATCGNNN.bam
255.96 MB
demux_NNNNGATCGNNN_unmapped.out.mate1.fastq.gz
32.29 MB
demux_NNNNGATCGNNN_stats.txt
1.81 kB
demux_NNNNGATCGNNN_SJ.out.tab
19.56 kB
STAR
demux_NNNNAGGCANNN.bam
2.07 GB
demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz
121.51 MB
demux_NNNNAGGCANNN.bam.bai
3.66 MB
demux_NNNNAGGCANNN_stats.txt
1.81 kB
demux_NNNNAGGCANNN_SJ.out.tab
153.76 kB
iCount xlsites
demux_NNNNAGTTANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNAGTTANNN_trimmed_singleAndMulti.bed.gz
3.64 MB
demux_NNNNAGTTANNN_trimmed_single.bed.gz
524.80 kB
demux_NNNNAGTTANNN_trimmed_reads_single.bed.gz
565.16 kB
demux_NNNNAGTTANNN_trimmed_single.bedgraph
2.03 MB
iCount reads proxy
fastqc
Directory
m6a_786o_ctrl-15min_20180413_ju_unmapped.fastq.gz
28.76 MB
stderr.txt
1.44 kB
m6a_786o_ctrl-15min_20180413_ju_unmapped_fastqc.zip
505.38 kB
iCount summary
demux_NNNNAGTTANNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNAGTTANNN_unique_summary.tsv_summary_gene.tsv
589.06 kB
demux_NNNNAGTTANNN_unique_summary.tsv_summary_subtype.tsv
648 B
iCount xlsites
demux_NNNNAGTTANNN_trimmed_single.bed.gz
41.84 kB
demux_NNNNAGTTANNN_trimmed_singleAndMulti.bed.gz
501.85 kB
demux_NNNNAGTTANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNAGTTANNN_trimmed_single.bedgraph
147.57 kB
demux_NNNNAGTTANNN_trimmed_reads_single.bed.gz
46.23 kB
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
7.68 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
7.16 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
43.49 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
22.18 kB
iCount reads proxy
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
327.66 kB
fastqc
Directory
stderr.txt
1.08 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
564.52 kB
iCount summary
m6A_NoQ_24H_20180106_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
646 B
m6A_NoQ_24H_20180106_JU_1Rep_grouped_summary.tsv_summary_type.tsv
270 B
m6A_NoQ_24H_20180106_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
916.63 kB
Cutadapt (single-end)
report.txt
673 B
demux_NNNNGCTTGCTGNNNNN_trimmed.fastq.gz
18.16 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_fastqc.zip
407.39 kB
fastqc
Directory
iCount xlsites
demux_NNNNGTTTCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNGTTTCNNN_trimmed_single.bed.gz
448.66 kB
demux_NNNNGTTTCNNN_trimmed_single.bedgraph
1.75 MB
demux_NNNNGTTTCNNN_trimmed_singleAndMulti.bed.gz
3.71 MB
demux_NNNNGTTTCNNN_trimmed_reads_single.bed.gz
536.19 kB
iCount xlsites
demux_NNNNTGAAANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNTGAAANNN_trimmed_single.bed.gz
364.25 kB
demux_NNNNTGAAANNN_trimmed_single.bedgraph
1.39 MB
demux_NNNNTGAAANNN_trimmed_reads_single.bed.gz
422.28 kB
demux_NNNNTGAAANNN_trimmed_singleAndMulti.bed.gz
3.37 MB
iCount xlsites
demux_NNNNTCGCCNNN_trimmed_reads_single.bed.gz
282.12 kB
demux_NNNNTCGCCNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNTCGCCNNN_trimmed_single.bed.gz
262.62 kB
demux_NNNNTCGCCNNN_trimmed_single.bedgraph
1016.16 kB
demux_NNNNTCGCCNNN_trimmed_singleAndMulti.bed.gz
2.09 MB
iCount peaks
Input_786O_Control-(completeDMEM)_6Reps_grouped_peaks.bed.gz
156.42 kB
Input_786O_Control-(completeDMEM)_6Reps_grouped_scores.tsv.gz
1.31 MB
Input_786O_Control-(completeDMEM)_6Reps_grouped_peaks.bedgraph
379.21 kB
iCount xlsites
demux_NNNNGTAACNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNGTAACNNN_trimmed_singleAndMulti.bed.gz
2.97 MB
demux_NNNNGTAACNNN_trimmed_reads_single.bed.gz
431.81 kB
demux_NNNNGTAACNNN_trimmed_single.bed.gz
400.79 kB
demux_NNNNGTAACNNN_trimmed_single.bedgraph
1.53 MB
iCount reads proxy
fastqc
Directory
m62a_786o_noq-15min_20180413_ju_unmapped_fastqc.zip
529.93 kB
stderr.txt
1.44 kB
m62a_786o_noq-15min_20180413_ju_unmapped.fastq.gz
55.74 MB
iCount summary
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
629 B
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_type.tsv
261 B
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
431.75 kB
iCount xlsites
m6a-786o-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
2.57 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
8.85 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
11.74 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
2.97 MB
iCount peaks
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_peaks.bedgraph
42.38 kB
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_peaks.bed.gz
21.30 kB
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_scores.tsv.gz
243.47 kB
iCount annotate
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_annotated.bedgraph
702.55 kB
Input_NoQ plus DM-Akg 24hrs_20180223_JU_1Rep_grouped_annotated.bed.gz
276.21 kB
iCount xlsites
demux_NNNNATACGNNN_trimmed_reads_single.bed.gz
1.21 MB
demux_NNNNATACGNNN_trimmed_skipped.bam
2.93 kB
demux_NNNNATACGNNN_trimmed_single.bed.gz
1.11 MB
demux_NNNNATACGNNN_trimmed_singleAndMulti.bed.gz
4.00 MB
demux_NNNNATACGNNN_trimmed_single.bedgraph
4.93 MB
STAR
m6A_786O_NoQ24H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
7.68 MB
m6A_786O_NoQ24H_20180106_JU_unmapped.bam.bai
3.02 MB
m6A_786O_NoQ24H_20180106_JU_unmapped.bam
60.44 MB
m6A_786O_NoQ24H_20180106_JU_unmapped_stats.txt
1.81 kB
m6A_786O_NoQ24H_20180106_JU_unmapped.bw
32.70 kB
m6A_786O_NoQ24H_20180106_JU_unmapped_SJ.out.tab
661.32 kB
iCount xlsites
demux_NNNNATCCANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNATCCANNN_trimmed_singleAndMulti.bed.gz
3.83 MB
demux_NNNNATCCANNN_trimmed_single.bed.gz
473.42 kB
demux_NNNNATCCANNN_trimmed_single.bedgraph
1.84 MB
demux_NNNNATCCANNN_trimmed_reads_single.bed.gz
555.63 kB
iCount xlsites
demux_NNNNCAAGTNNN_trimmed_single.bedgraph
1.46 MB
demux_NNNNCAAGTNNN_trimmed_skipped.bam
3.09 kB
demux_NNNNCAAGTNNN_trimmed_singleAndMulti.bed.gz
2.14 MB
demux_NNNNCAAGTNNN_trimmed_single.bed.gz
384.65 kB
STAR
demux_NNNNACCTTNNN_unmapped.out.mate1.fastq.gz
25.90 MB
demux_NNNNACCTTNNN.bam.bai
3.33 MB
demux_NNNNACCTTNNN.bam
213.08 MB
demux_NNNNACCTTNNN_SJ.out.tab
100.41 kB
demux_NNNNACCTTNNN_stats.txt
1.80 kB
iCount summary
Input_Control 24hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
639 B
Input_Control 24hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_type.tsv
266 B
Input_Control 24hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
647.28 kB
STAR
demux_NNNNATCTGTTANNNNN.bam.bai
2.80 MB
demux_NNNNATCTGTTANNNNN_unmapped.out.mate1.fastq.gz
19.23 MB
demux_NNNNATCTGTTANNNNN_SJ.out.tab
60.13 kB
demux_NNNNATCTGTTANNNNN.bam
162.41 MB
demux_NNNNATCTGTTANNNNN_stats.txt
1.80 kB
iCount summary
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_gene.tsv
633.72 kB
iCount peaks
Input_Control 24hrs_20180223_JU_1Rep_grouped_peaks.bed.gz
44.36 kB
Input_Control 24hrs_20180223_JU_1Rep_grouped_scores.tsv.gz
459.99 kB
Input_Control 24hrs_20180223_JU_1Rep_grouped_peaks.bedgraph
95.37 kB
iCount RNA-maps
results.tar.gz
403.21 kB
STAR
demux_NNNNCCGGANNN_stats.txt
1.80 kB
demux_NNNNCCGGANNN_SJ.out.tab
71.82 kB
demux_NNNNCCGGANNN.bam
169.29 MB
demux_NNNNCCGGANNN.bam.bai
2.19 MB
demux_NNNNCCGGANNN_unmapped.out.mate1.fastq.gz
8.98 MB
iCount xlsites
demux_NNNNTCATCNNN_multi.bed.gz
1.80 MB
demux_NNNNTCATCNNN_unique.bed.gz
411.90 kB
demux_NNNNTCATCNNN_unique.bedgraph
1.61 MB
demux_NNNNTCATCNNN_skipped.bam
6.87 MB
iCount xlsites
demux_NNNNGGAGCNNN_unique.bed.gz
852.80 kB
demux_NNNNGGAGCNNN_skipped.bam
8.74 MB
demux_NNNNGGAGCNNN_unique.bedgraph
3.57 MB
demux_NNNNGGAGCNNN_multi.bed.gz
2.83 MB
iCount xlsites
demux_NNNNTGTGGNNN_multi.bed.gz
421.71 kB
demux_NNNNTGTGGNNN_skipped.bam
832.05 kB
demux_NNNNTGTGGNNN_unique.bedgraph
176.69 kB
demux_NNNNTGTGGNNN_unique.bed.gz
49.15 kB
iCount summary
demux_NNNNTGAAANNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNTGAAANNN_unique_summary.tsv_summary_subtype.tsv
639 B
demux_NNNNTGAAANNN_unique_summary.tsv_summary_gene.tsv
522.94 kB
iCount summary
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
445.83 kB
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_type.tsv
263 B
iCount annotate
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_annotated.bed.gz
469.92 kB
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_annotated.bedgraph
1.22 MB
iCount annotate
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_annotated.bedgraph
9.13 MB
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_annotated.bed.gz
2.84 MB
iCount summary
demux_NNNNCCGGANNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_gene.tsv
485.57 kB
demux_NNNNCCGGANNN_unique_summary.tsv_summary_subtype.tsv
633 B
iCount peaks
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_scores.tsv.gz
1.92 MB
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_peaks.bedgraph
1.05 MB
m6A_786O:wtVHL__20180420_JU_1Rep_grouped_peaks.bed.gz
327.36 kB
STAR
demux_NNNNATCTGNNN.bam
193.02 MB
demux_NNNNATCTGNNN_stats.txt
1.81 kB
demux_NNNNATCTGNNN_unmapped.out.mate1.fastq.gz
24.07 MB
demux_NNNNATCTGNNN_SJ.out.tab
20.65 kB
demux_NNNNATCTGNNN.bam.bai
1.83 MB
iCount peaks
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_scores.tsv.gz
500.82 kB
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_peaks.bedgraph
108.07 kB
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_peaks.bed.gz
52.14 kB
iCount summary
Input_Control 4hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
637 B
Input_Control 4hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
543.58 kB
Input_Control 4hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_type.tsv
264 B
iCount peaks
Input_Control 4hrs_20180223_JU_1Rep_grouped_scores.tsv.gz
354.07 kB
Input_Control 4hrs_20180223_JU_1Rep_grouped_peaks.bedgraph
74.04 kB
Input_Control 4hrs_20180223_JU_1Rep_grouped_peaks.bed.gz
37.05 kB
iCount xlsites
demux_NNNNAGTTANNN_skipped.bam
8.19 MB
demux_NNNNAGTTANNN_unique.bedgraph
1.46 MB
demux_NNNNAGTTANNN_unique.bed.gz
384.90 kB
demux_NNNNAGTTANNN_multi.bed.gz
1.92 MB
iCount summary
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_summary.tsv_summary_type.tsv
261 B
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
467.85 kB
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
632 B
iCount summary
Input_NoQ 15min_20180223_JU_1Rep_grouped_summary.tsv_summary_type.tsv
265 B
Input_NoQ 15min_20180223_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
638 B
Input_NoQ 15min_20180223_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
572.51 kB
iCount peaks
test2_m6A_786O_NoQ4hrs_2reps_grouped_peaks.bedgraph
2.21 MB
test2_m6A_786O_NoQ4hrs_2reps_grouped_peaks.bed.gz
575.39 kB
test2_m6A_786O_NoQ4hrs_2reps_grouped_scores.tsv.gz
2.97 MB
iCount peaks
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_scores.tsv.gz
272.57 kB
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_peaks.bed.gz
25.75 kB
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_peaks.bedgraph
51.45 kB
iCount peaks
Input_NoQ 15min_20180223_JU_1Rep_grouped_peaks.bed.gz
37.42 kB
Input_NoQ 15min_20180223_JU_1Rep_grouped_scores.tsv.gz
381.72 kB
Input_NoQ 15min_20180223_JU_1Rep_grouped_peaks.bedgraph
75.37 kB
iCount peaks
Input_Control 15min_20180223_JU_1Rep_grouped_scores.tsv.gz
498.61 kB
Input_Control 15min_20180223_JU_1Rep_grouped_peaks.bed.gz
51.95 kB
Input_Control 15min_20180223_JU_1Rep_grouped_peaks.bedgraph
108.05 kB
iCount annotate
Input_Control 15min_20180223_JU_1Rep_grouped_annotated.bed.gz
614.48 kB
Input_Control 15min_20180223_JU_1Rep_grouped_annotated.bedgraph
1.62 MB
iCount xlsites
demux_NNNNATCCANNN_unique.bed.gz
501.76 kB
demux_NNNNATCCANNN_multi.bed.gz
2.09 MB
demux_NNNNATCCANNN_skipped.bam
1.63 MB
demux_NNNNATCCANNN_unique.bedgraph
1.92 MB
iCount xlsites
demux_NNNNTCACANNN_unique.bed.gz
1.13 MB
demux_NNNNTCACANNN_multi.bed.gz
6.26 MB
demux_NNNNTCACANNN_unique.bedgraph
4.30 MB
demux_NNNNTCACANNN_skipped.bam
3.89 MB
iCount peaks
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_peaks.bedgraph
101.84 kB
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_peaks.bed.gz
48.64 kB
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_scores.tsv.gz
344.50 kB
STAR
demux_NNNNTCACANNN.bam.bai
4.23 MB
demux_NNNNTCACANNN_unmapped.out.mate1.fastq.gz
39.04 MB
demux_NNNNTCACANNN_SJ.out.tab
235.59 kB
demux_NNNNTCACANNN.bam
192.96 MB
demux_NNNNTCACANNN_stats.txt
1.81 kB
iCount peaks
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_peaks.bed.gz
57.92 kB
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_peaks.bedgraph
123.76 kB
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_scores.tsv.gz
392.87 kB
iCount summary
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
610.39 kB
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
637 B
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
266 B
STAR
demux_NNNNATCTGATTNNNNN_unmapped.out.mate1.fastq.gz
19.16 MB
demux_NNNNATCTGATTNNNNN.bam.bai
3.10 MB
demux_NNNNATCTGATTNNNNN.bam
217.82 MB
demux_NNNNATCTGATTNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGATTNNNNN_SJ.out.tab
80.58 kB
iCount annotate
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_annotated.bed.gz
338.65 kB
m1A_786O_NoQ 4H_20180413_JU_1Rep_grouped_annotated.bedgraph
950.65 kB
STAR
demux_NNNNATCTGTGCNNNNN.bam.bai
2.72 MB
demux_NNNNATCTGTGCNNNNN_unmapped.out.mate1.fastq.gz
7.50 MB
demux_NNNNATCTGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGTGCNNNNN.bam
146.98 MB
demux_NNNNATCTGTGCNNNNN_SJ.out.tab
58.98 kB
iCount annotate
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_annotated.bed.gz
539.76 kB
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_annotated.bedgraph
1.43 MB
STAR
demux_NNNNCAAGTNNN_unmapped.out.mate1.fastq.gz
16.75 MB
demux_NNNNCAAGTNNN.bam
287.17 MB
demux_NNNNCAAGTNNN_SJ.out.tab
136.92 kB
demux_NNNNCAAGTNNN.bam.bai
3.41 MB
demux_NNNNCAAGTNNN_stats.txt
1.80 kB
iCount peaks
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_peaks.bedgraph
151.70 kB
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_scores.tsv.gz
478.68 kB
m62A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_peaks.bed.gz
69.67 kB
iCount xlsites
demux_NNNNGAATANNN_trimmed_skipped.bam
3.22 kB
demux_NNNNGAATANNN_trimmed_single.bed.gz
424.24 kB
demux_NNNNGAATANNN_trimmed_singleAndMulti.bed.gz
2.47 MB
demux_NNNNGAATANNN_trimmed_single.bedgraph
1.62 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCAAGTNNN.fastq.gz
43.43 MB
stderr.txt
975 B
demux_NNNNCAAGTNNN_fastqc.zip
473.05 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCACANNN.fastq.gz
37.27 MB
demux_NNNNTCACANNN_fastqc.zip
510.02 kB
stderr.txt
975 B
iCount xlsites
igg-786o-20180420-jufastqgz_unmapped_single.bed.gz
87.73 kB
igg-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
293.66 kB
igg-786o-20180420-jufastqgz_unmapped_skipped.bam
2.92 kB
igg-786o-20180420-jufastqgz_unmapped_single.bedgraph
313.80 kB
iCount summary
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_gene.tsv
346.81 kB
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_subtype.tsv
631 B
iCount summary
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_type.tsv
266 B
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
684.42 kB
Input_NoQ 4hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
636 B
STAR
igg-786o-20180420-jufastqgz_unmapped.bam.bai
1.94 MB
igg-786o-20180420-jufastqgz_unmapped.bam
18.38 MB
igg-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
3.97 MB
igg-786o-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
igg-786o-20180420-jufastqgz_unmapped_SJ.out.tab
35.01 kB
igg-786o-20180420-jufastqgz_unmapped.bw
19.98 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAGTCCNNN.fastq.gz
403.60 MB
stderr.txt
975 B
demux_NNNNAGTCCNNN_fastqc.zip
487.55 kB
iCount xlsites
igg-786o-20180420-ju_trimmed_skipped.bam
3.97 kB
igg-786o-20180420-ju_trimmed_single.bed.gz
50.75 kB
igg-786o-20180420-ju_trimmed_single.bedgraph
190 B
igg-786o-20180420-ju_trimmed_singleAndMulti.bed.gz
85.08 kB
STAR
demux_NNNNGCTTGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
11.05 MB
demux_NNNNGCTTGATTNNNNN_trimmed.bam.bai
2.93 MB
demux_NNNNGCTTGATTNNNNN_trimmed.bam
176.98 MB
demux_NNNNGCTTGATTNNNNN_trimmed_SJ.out.tab
67.61 kB
demux_NNNNGCTTGATTNNNNN_trimmed_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGTATNNN.fastq.gz
82.59 MB
demux_NNNNTGTATNNN_fastqc.zip
486.00 kB
stderr.txt
975 B
iCount summary
IgG_786O__20180420_JU_IgG_grouped_summary.tsv_summary_type.tsv
262 B
IgG_786O__20180420_JU_IgG_grouped_summary.tsv_summary_subtype.tsv
631 B
IgG_786O__20180420_JU_IgG_grouped_summary.tsv_summary_gene.tsv
346.81 kB
STAR
igg-786o-20180420-ju_trimmed.bam
61.51 MB
igg-786o-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
9.68 MB
igg-786o-20180420-ju_trimmed.bam.bai
20.56 kB
igg-786o-20180420-ju_trimmed_SJ.out.tab
0 B
igg-786o-20180420-ju_trimmed_stats.txt
1.78 kB
igg-786o-20180420-ju_trimmed.bw
106.71 kB
iCount peaks
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_peaks.bed.gz
29.59 kB
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_scores.tsv.gz
330.14 kB
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_peaks.bedgraph
60.20 kB
iCount xlsites
demux_NNNNGAATANNN_trimmed_singleAndMulti.bed.gz
2.47 MB
demux_NNNNGAATANNN_trimmed_skipped.bam
3.22 kB
demux_NNNNGAATANNN_trimmed_single.bed.gz
424.24 kB
demux_NNNNGAATANNN_trimmed_single.bedgraph
1.62 MB
iCount RNA-maps
results.tar.gz
448.21 kB
iCount summary
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
627 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
261 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
288.35 kB
STAR
demux_NNNNAGTTANNN_trimmed_unmapped.out.mate1.fastq.gz
64.06 MB
demux_NNNNAGTTANNN_trimmed.bam
2.16 GB
demux_NNNNAGTTANNN_trimmed.bam.bai
4.80 MB
demux_NNNNAGTTANNN_trimmed_SJ.out.tab
772.99 kB
demux_NNNNAGTTANNN_trimmed_stats.txt
1.81 kB
iCount xlsites
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
237.15 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
3.25 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
353.67 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
95.16 kB
iCount summary
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
348.10 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
261 B
STAR
demux_NNNNTGTATNNN.bam
294.34 MB
demux_NNNNTGTATNNN_unmapped.out.mate1.fastq.gz
38.53 MB
demux_NNNNTGTATNNN_stats.txt
1.81 kB
demux_NNNNTGTATNNN_SJ.out.tab
17.30 kB
demux_NNNNTGTATNNN.bam.bai
1.84 MB
iCount summary
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
629 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
300.96 kB
iCount xlsites
demux_NNNNGCTTGAGGNNNNN_trimmed_single.bed.gz
148.32 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_singleAndMulti.bed.gz
1.18 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_skipped.bam
3.26 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_single.bedgraph
534.86 kB
STAR
demux_NNNNTCACANNN.bam.bai
3.55 MB
demux_NNNNTCACANNN_stats.txt
1.81 kB
demux_NNNNTCACANNN_unmapped.out.mate1.fastq.gz
108.06 MB
demux_NNNNTCACANNN.bam
1.88 GB
demux_NNNNTCACANNN_SJ.out.tab
149.30 kB
iCount summary
demux_NNNNATCTGTTANNNNN_trimmed_single_summary.tsv_summary_type.tsv
258 B
demux_NNNNATCTGTTANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
628 B
demux_NNNNATCTGTTANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
380.31 kB
iCount annotate
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_annotated.bedgraph
1.28 MB
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_annotated.bed.gz
466.26 kB
iCount summary
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
246 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
17.88 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
526 B
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
5.61 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
27.59 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
17.35 kB
STAR
m6a-786o-ctrl-24h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
18.18 MB
m6a-786o-ctrl-24h-20180106-ju_trimmed.bam
93.08 MB
m6a-786o-ctrl-24h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-24h-20180106-ju_trimmed.bw
106.30 kB
iCount reads proxy
m6A_786O_NoQ24H_20180106_JU_unmapped.fastq.gz
26.94 MB
fastqc
Directory
stderr.txt
1.36 kB
m6A_786O_NoQ24H_20180106_JU_unmapped_fastqc.zip
482.85 kB
iCount summary
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
353.59 kB
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
645 B
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
267 B
Cutadapt (single-end)
fastqc
Directory
report.txt
696 B
m6a-786o-noq-15-20180106-ju_trimmed_fastqc.zip
563.05 kB
m6a-786o-noq-15-20180106-ju_trimmed.fastq.gz
37.36 MB
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
270 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
14.44 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
19.32 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNATCTGTTANNNNN_trimmed.fastq.gz
25.22 MB
demux_NNNNATCTGTTANNNNN_trimmed_fastqc.zip
404.82 kB
report.txt
674 B
iCount xlsites
demux_NNNNTCCACNNN_trimmed_singleAndMulti.bed.gz
1.25 MB
demux_NNNNTCCACNNN_trimmed_single.bed.gz
163.21 kB
demux_NNNNTCCACNNN_trimmed_single.bedgraph
593.88 kB
demux_NNNNTCCACNNN_trimmed_skipped.bam
3.09 kB
STAR
demux_NNNNGGAGCNNN_unmapped.out.mate1.fastq.gz
21.83 MB
demux_NNNNGGAGCNNN.bam
1.26 GB
demux_NNNNGGAGCNNN.bam.bai
4.70 MB
demux_NNNNGGAGCNNN_stats.txt
1.81 kB
demux_NNNNGGAGCNNN_SJ.out.tab
1.26 MB
iCount summary
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
589 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
301.20 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
260 B
iCount RNA-maps
results.tar.gz
326.83 kB
iCount xlsites
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
94.47 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
233.01 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
348.51 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
STAR
demux_NNNNTCCACNNN_trimmed_unmapped.out.mate1.fastq.gz
20.20 MB
demux_NNNNTCCACNNN_trimmed.bam.bai
2.90 MB
demux_NNNNTCCACNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCCACNNN_trimmed.bam
373.47 MB
demux_NNNNTCCACNNN_trimmed_SJ.out.tab
62.29 kB
STAR
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
2.59 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
15.05 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
38.88 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.80 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.40 kB
STAR
demux_NNNNTTTAANNN_trimmed_unmapped.out.mate1.fastq.gz
13.67 MB
demux_NNNNTTTAANNN_trimmed.bam.bai
3.48 MB
demux_NNNNTTTAANNN_trimmed_SJ.out.tab
112.31 kB
demux_NNNNTTTAANNN_trimmed_stats.txt
1.80 kB
demux_NNNNTTTAANNN_trimmed.bam
216.64 MB
Cutadapt (single-end)
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_fastqc.zip
448.83 kB
fastqc
Directory
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed.fastq.gz
113.74 MB
report.txt
704 B
iCount reads proxy
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
9.10 MB
stderr.txt
2.12 kB
fastqc
Directory
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
495.27 kB
STAR
demux_NNNNCCGGANNN_trimmed_unmapped.out.mate1.fastq.gz
31.89 MB
demux_NNNNCCGGANNN_trimmed.bam
650.90 MB
demux_NNNNCCGGANNN_trimmed.bam.bai
3.18 MB
demux_NNNNCCGGANNN_trimmed_stats.txt
1.81 kB
demux_NNNNCCGGANNN_trimmed_SJ.out.tab
91.24 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGATTNNNNN.fastq.gz
37.61 MB
demux_NNNNGCTTGATTNNNNN_fastqc.zip
400.44 kB
stderr.txt
1.05 kB
iCount xlsites
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
35.53 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
266 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
42.61 kB
STAR
demux_NNNNGTTTCNNN_unmapped.out.mate1.fastq.gz
4.23 MB
demux_NNNNGTTTCNNN.bam.bai
1.88 MB
demux_NNNNGTTTCNNN.bam
245.93 MB
demux_NNNNGTTTCNNN_SJ.out.tab
22.74 kB
demux_NNNNGTTTCNNN_stats.txt
1.80 kB
STAR
demux_NNNNTCATCNNN.bam.bai
2.01 MB
demux_NNNNTCATCNNN.bam
311.82 MB
demux_NNNNTCATCNNN_SJ.out.tab
30.04 kB
demux_NNNNTCATCNNN_stats.txt
1.80 kB
demux_NNNNTCATCNNN_unmapped.out.mate1.fastq.gz
6.17 MB
STAR
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
19.58 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
9.10 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed.bam
50.70 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed.bw
105.00 kB
STAR
demux_NNNNGCTTGTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
9.72 MB
demux_NNNNGCTTGTTANNNNN_trimmed.bam.bai
2.70 MB
demux_NNNNGCTTGTTANNNNN_trimmed.bam
129.23 MB
demux_NNNNGCTTGTTANNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGTTANNNNN_trimmed_SJ.out.tab
50.93 kB
iCount xlsites
demux_NNNNCATACNNN_skipped.bam
7.92 MB
demux_NNNNCATACNNN_unique.bed.gz
2.04 MB
demux_NNNNCATACNNN_multi.bed.gz
4.98 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
674 B
demux_NNNNGCTTGTTANNNNN_trimmed_fastqc.zip
414.17 kB
demux_NNNNGCTTGTTANNNNN_trimmed.fastq.gz
24.73 MB
iCount xlsites
demux_NNNNGCTTGCTGNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_single.bed.gz
132.19 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_single.bedgraph
474.97 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_singleAndMulti.bed.gz
1.11 MB
iCount xlsites
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
3.11 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
348.05 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
80.21 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
279.49 kB
iCount summary
demux_NNNNAGACTNNN_trimmed_single_summary.tsv_summary_gene.tsv
431.75 kB
demux_NNNNAGACTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
629 B
demux_NNNNAGACTNNN_trimmed_single_summary.tsv_summary_type.tsv
261 B
Cutadapt (single-end)
fastqc
Directory
report.txt
697 B
m6a-786o-ctrl-4h-20180106-ju_trimmed.fastq.gz
114.83 MB
m6a-786o-ctrl-4h-20180106-ju_trimmed_fastqc.zip
446.51 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCCGGANNN.fastq.gz
113.02 MB
stderr.txt
1.00 kB
demux_NNNNCCGGANNN_fastqc.zip
452.96 kB
iCount reads proxy
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
8.53 MB
fastqc
Directory
stderr.txt
2.14 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
532.35 kB
STAR
demux_NNNNGTAACNNN.bam
1.13 GB
demux_NNNNGTAACNNN.bam.bai
4.41 MB
demux_NNNNGTAACNNN_SJ.out.tab
1.31 MB
demux_NNNNGTAACNNN_stats.txt
1.80 kB
demux_NNNNGTAACNNN_unmapped.out.mate1.fastq.gz
15.70 MB
STAR
demux_NNNNCATTTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCATTTNNN_trimmed.bam
147.85 MB
demux_NNNNCATTTNNN_trimmed_unmapped.out.mate1.fastq.gz
9.32 MB
demux_NNNNCATTTNNN_trimmed.bam.bai
2.99 MB
demux_NNNNCATTTNNN_trimmed_SJ.out.tab
73.16 kB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
48.72 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
570.81 kB
report.txt
727 B
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNAGACTNNN_trimmed.fastq.gz
21.84 MB
demux_NNNNAGACTNNN_trimmed_fastqc.zip
436.68 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCATTTNNN.fastq.gz
27.81 MB
stderr.txt
975 B
demux_NNNNCATTTNNN_fastqc.zip
470.22 kB
iCount summary
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
262 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
195.80 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
594 B
iCount reads proxy
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
1.22 MB
fastqc
Directory
stderr.txt
2.16 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
639.16 kB
iCount xlsites
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
90.01 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
392.89 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
314.25 kB
STAR
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
25.28 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
5.84 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
2.08 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
39.50 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
20.44 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCCACNNN.fastq.gz
71.12 MB
demux_NNNNTCCACNNN_fastqc.zip
475.79 kB
stderr.txt
975 B
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bam
3.81 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
1.22 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bam.bai
19.58 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bw
104.85 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
iCount xlsites
demux_NNNNTCATCNNN_multi.bed.gz
489.29 kB
demux_NNNNTCATCNNN_skipped.bam
1.50 MB
demux_NNNNTCATCNNN_unique.bed.gz
52.87 kB
Reads (single-end)
demux_NNNNATCTGTTANNNNN_fastqc.zip
435.33 kB
fastqc
Directory
stderr.txt
1.10 kB
demux_NNNNATCTGTTANNNNN.fastq.gz
29.08 MB
Reads (single-end)
demux_NNNNATCTGTTANNNNN.fastq.gz
35.59 MB
fastqc
Directory
demux_NNNNATCTGTTANNNNN_fastqc.zip
397.82 kB
stderr.txt
1.05 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGAGGNNNNN.fastq.gz
21.17 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGAGGNNNNN_fastqc.zip
403.48 kB
iCount RNA-maps
results.tar.gz
242.79 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGAATANNN.fastq.gz
62.54 MB
stderr.txt
975 B
demux_NNNNGAATANNN_fastqc.zip
516.08 kB
iCount summary
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
414 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
24.75 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
254 B
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
62.82 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
575.48 kB
iCount xlsites
demux_NNNNACCTTNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNACCTTNNN_trimmed_singleAndMulti.bed.gz
1.90 MB
demux_NNNNACCTTNNN_trimmed_single.bed.gz
284.31 kB
demux_NNNNACCTTNNN_trimmed_single.bedgraph
1.05 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
724 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
1.16 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
558.73 kB
STAR
demux_NNNNACCTTNNN_trimmed_unmapped.out.mate1.fastq.gz
16.07 MB
demux_NNNNACCTTNNN_trimmed.bam
201.04 MB
demux_NNNNACCTTNNN_trimmed.bam.bai
3.40 MB
demux_NNNNACCTTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNACCTTNNN_trimmed_SJ.out.tab
105.30 kB
iCount xlsites
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
41.83 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
27.33 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
8.74 kB
iCount summary
demux_NNNNGCTTGCGTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGCGTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
334.71 kB
demux_NNNNGCTTGCGTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
iCount xlsites
demux_NNNNGCTTGCGTNNNNN_trimmed_singleAndMulti.bed.gz
1.15 MB
demux_NNNNGCTTGCGTNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGCTTGCGTNNNNN_trimmed_single.bed.gz
139.00 kB
demux_NNNNGCTTGCGTNNNNN_trimmed_single.bedgraph
499.25 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.00 kB
demux_NNNNACCTTNNN.fastq.gz
44.22 MB
demux_NNNNACCTTNNN_fastqc.zip
528.52 kB
iCount summary
demux_NNNNAGGCANNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_gene.tsv
570.64 kB
demux_NNNNAGGCANNN_unique_summary.tsv_summary_type.tsv
267 B
Cutadapt (single-end)
fastqc
Directory
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
43.74 MB
report.txt
729 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
756.05 kB
iCount summary
demux_NNNNATCTGATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
demux_NNNNATCTGATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNATCTGATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
442.58 kB
STAR
demux_NNNNGCTTGCGTNNNNN_trimmed.bam
105.31 MB
demux_NNNNGCTTGCGTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
5.71 MB
demux_NNNNGCTTGCGTNNNNN_trimmed.bam.bai
2.71 MB
demux_NNNNGCTTGCGTNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGCGTNNNNN_trimmed_SJ.out.tab
45.90 kB
iCount RNA-maps
results.tar.gz
213.07 kB
Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNGCTTGCGTNNNNN_fastqc.zip
415.91 kB
demux_NNNNGCTTGCGTNNNNN.fastq.gz
17.80 MB
iCount xlsites
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
3.24 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
384.51 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
109.24 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
453.66 kB
STAR
demux_NNNNATCTGATTNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNATCTGATTNNNNN_trimmed.bam.bai
3.12 MB
demux_NNNNATCTGATTNNNNN_trimmed.bam
209.33 MB
demux_NNNNATCTGATTNNNNN_trimmed_SJ.out.tab
82.51 kB
demux_NNNNATCTGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
12.36 MB
iCount summary
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
529 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
9.45 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
253 B
iCount reads proxy
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.fastq.gz
59.01 MB
fastqc
Directory
stderr.txt
1.48 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_fastqc.zip
510.01 kB
STAR
demux_NNNNATCTGAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
8.86 MB
demux_NNNNATCTGAGGNNNNN_trimmed.bam
179.77 MB
demux_NNNNATCTGAGGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNATCTGAGGNNNNN_trimmed_SJ.out.tab
72.47 kB
demux_NNNNATCTGAGGNNNNN_trimmed.bam.bai
3.04 MB
iCount xlsites
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
55.36 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
100.34 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
268 B
iCount xlsites
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bed.gz
403.25 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_skipped.bam
4.50 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
1.19 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bedgraph
1.55 MB
STAR
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
13.26 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bam.bai
20.56 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bam
134.41 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bw
106.65 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
iCount reads proxy
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
563.73 kB
fastqc
Directory
stderr.txt
2.00 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
582.89 kB
Cutadapt (single-end)
demux_NNNNATCTGAGGNNNNN_trimmed.fastq.gz
29.81 MB
report.txt
673 B
fastqc
Directory
demux_NNNNATCTGAGGNNNNN_trimmed_fastqc.zip
416.99 kB
iCount xlsites
demux_NNNNTTTAANNN_trimmed_skipped.bam
3.30 kB
demux_NNNNTTTAANNN_trimmed_singleAndMulti.bed.gz
1.95 MB
demux_NNNNTTTAANNN_trimmed_single.bed.gz
304.68 kB
demux_NNNNTTTAANNN_trimmed_single.bedgraph
1.13 MB
Cutadapt (single-end)
report.txt
727 B
fastqc
Directory
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
52.03 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
559.38 kB
STAR
demux_NNNNTTTAANNN_trimmed.bam
212.85 MB
demux_NNNNTTTAANNN_trimmed_unmapped.out.mate1.fastq.gz
13.37 MB
demux_NNNNTTTAANNN_trimmed.bam.bai
3.45 MB
demux_NNNNTTTAANNN_trimmed_SJ.out.tab
109.55 kB
demux_NNNNTTTAANNN_trimmed_stats.txt
1.80 kB
STAR
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
563.73 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed.bam.bai
17.19 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed.bam
1.80 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed.bw
104.36 kB
iCount peaks
demux_NNNNATACGNNN_unique_peaks.bed.gz
87.40 kB
demux_NNNNATACGNNN_unique_peaks.bedgraph
260.81 kB
demux_NNNNATACGNNN_unique_scores.tsv.gz
977.27 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
724 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
542.77 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
1.27 MB
iCount summary
m6A_786O_NoQ4H_20180106_JU_unmapped_single_summary_subtype.tsv
651 B
m6A_786O_NoQ4H_20180106_JU_unmapped_single_summary_type.tsv
269 B
m6A_786O_NoQ4H_20180106_JU_unmapped_single_summary_gene.tsv
995.55 kB
iCount reads proxy
fastqc
Directory
m6A_786O_NoQ4H_20180106_JU_unmapped_fastqc.zip
419.88 kB
stderr.txt
1.34 kB
m6A_786O_NoQ4H_20180106_JU_unmapped.fastq.gz
44.22 MB
iCount xlsites
demux_NNNNGCTTGATTNNNNN_trimmed_skipped.bam
3.70 kB
demux_NNNNGCTTGATTNNNNN_trimmed_single.bed.gz
183.87 kB
demux_NNNNGCTTGATTNNNNN_trimmed_single.bedgraph
671.89 kB
demux_NNNNGCTTGATTNNNNN_trimmed_singleAndMulti.bed.gz
1.42 MB
iCount xlsites
m6a-786o-noq-4h-20180106-ju_trimmed_single.bed.gz
81.12 kB
m6a-786o-noq-4h-20180106-ju_trimmed_singleAndMulti.bed.gz
124.48 kB
m6a-786o-noq-4h-20180106-ju_trimmed_single.bedgraph
188 B
m6a-786o-noq-4h-20180106-ju_trimmed_skipped.bam
3.98 kB
STAR
demux_NNNNGCTTGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
11.06 MB
demux_NNNNGCTTGATTNNNNN_trimmed.bam
177.05 MB
demux_NNNNGCTTGATTNNNNN_trimmed_SJ.out.tab
67.64 kB
demux_NNNNGCTTGATTNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGATTNNNNN_trimmed.bam.bai
2.93 MB
iCount summary
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
353.65 kB
STAR
m6a-786o-noq-4h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-4h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
44.22 MB
m6a-786o-noq-4h-20180106-ju_trimmed.bam
218.31 MB
m6a-786o-noq-4h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-4h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-4h-20180106-ju_trimmed.bw
106.66 kB
Cutadapt (single-end)
report.txt
696 B
fastqc
Directory
m6a-786o-noq-4h-20180106-ju_trimmed.fastq.gz
141.00 MB
m6a-786o-noq-4h-20180106-ju_trimmed_fastqc.zip
439.86 kB
iCount summary
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_gene.tsv
465.32 kB
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
634 B
Cutadapt (single-end)
fastqc
Directory
report.txt
674 B
demux_NNNNGCTTGATTNNNNN_trimmed.fastq.gz
31.29 MB
demux_NNNNGCTTGATTNNNNN_trimmed_fastqc.zip
400.51 kB
STAR
demux_NNNNCATTTNNN_trimmed_unmapped.out.mate1.fastq.gz
9.27 MB
demux_NNNNCATTTNNN_trimmed.bam.bai
2.97 MB
demux_NNNNCATTTNNN_trimmed.bam
147.28 MB
demux_NNNNCATTTNNN_trimmed_SJ.out.tab
72.59 kB
demux_NNNNCATTTNNN_trimmed_stats.txt
1.80 kB
iCount summary
demux_NNNNTCCACNNN_trimmed_single_summary.tsv_summary_gene.tsv
382.84 kB
demux_NNNNTCCACNNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNTCCACNNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
iCount xlsites
demux_NNNNGCTTGAGGNNNNN_trimmed_single.bed.gz
148.45 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_singleAndMulti.bed.gz
1.18 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_single.bedgraph
535.28 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_skipped.bam
3.26 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
702 B
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed.fastq.gz
81.48 MB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed_fastqc.zip
447.87 kB
iCount xlsites
IgG_786O_RabbitIgG_20180106_JU_unmapped_single.bedgraph
87.98 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_singleAndMulti.bed.gz
70.39 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_skipped.bam
2.94 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_single.bed.gz
25.73 kB
iCount xlsites
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single.bed.gz
2.13 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_skipped.bam
3.32 kB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single.bedgraph
9.93 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_singleAndMulti.bed.gz
4.01 MB
STAR
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_SJ.out.tab
750.74 kB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped.bam.bai
3.40 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
10.76 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_stats.txt
1.81 kB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped.bam
81.99 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped.bw
35.23 kB
iCount xlsites
igg-786o-rabbit-igg-20180106-ju_trimmed_skipped.bam
3.98 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_single.bed.gz
27.46 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_singleAndMulti.bed.gz
36.11 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_single.bedgraph
192 B
iCount summary
demux_NNNNTCACANNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNTCACANNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNTCACANNN_unique_summary.tsv_summary_gene.tsv
579.22 kB
STAR
igg-786o-rabbit-igg-20180106-ju_trimmed.bam
17.59 MB
igg-786o-rabbit-igg-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
2.68 MB
igg-786o-rabbit-igg-20180106-ju_trimmed.bam.bai
19.30 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_SJ.out.tab
0 B
igg-786o-rabbit-igg-20180106-ju_trimmed_stats.txt
1.78 kB
igg-786o-rabbit-igg-20180106-ju_trimmed.bw
105.70 kB
iCount xlsites
demux_NNNNAGGCANNN_trimmed_skipped.bam
3.08 kB
demux_NNNNAGGCANNN_trimmed_single.bed.gz
220.59 kB
demux_NNNNAGGCANNN_trimmed_singleAndMulti.bed.gz
1.51 MB
demux_NNNNAGGCANNN_trimmed_single.bedgraph
822.31 kB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
2.20 MB
report.txt
727 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
530.23 kB
iCount summary
demux_NNNNGTATTNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNGTATTNNN_trimmed_single_summary.tsv_summary_gene.tsv
684.42 kB
demux_NNNNGTATTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
636 B
iCount annotate
test_m6A_786O_NoQ15min_2Reps_grouped_annotated.bed.gz
632.18 kB
test_m6A_786O_NoQ15min_2Reps_grouped_annotated.bedgraph
1.67 MB
STAR
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed.bam
191.58 MB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed.bw
106.63 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
38.18 MB
iCount xlsites
demux_NNNNGTATTNNN_trimmed_singleAndMulti.bed.gz
2.56 MB
demux_NNNNGTATTNNN_trimmed_skipped.bam
3.45 kB
demux_NNNNGTATTNNN_trimmed_single.bedgraph
1.61 MB
demux_NNNNGTATTNNN_trimmed_single.bed.gz
424.51 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
728 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
2.34 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
590.62 kB
STAR
demux_NNNNGTATTNNN_trimmed_unmapped.out.mate1.fastq.gz
29.65 MB
demux_NNNNGTATTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTATTNNN_trimmed.bam.bai
3.85 MB
demux_NNNNGTATTNNN_trimmed.bam
294.74 MB
demux_NNNNGTATTNNN_trimmed_SJ.out.tab
150.25 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
703 B
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed.fastq.gz
123.42 MB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_fastqc.zip
440.05 kB
iCount summary
demux_NNNNGCTTGTGCNNNNN_trimmed_single_summary.tsv_summary_type.tsv
259 B
demux_NNNNGCTTGTGCNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNGCTTGTGCNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
333.18 kB
STAR
m6A_786O_Ctrl24H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
4.88 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped.bam.bai
2.79 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_stats.txt
1.80 kB
m6A_786O_Ctrl24H_20180106_JU_unmapped.bam
41.07 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_SJ.out.tab
468.18 kB
m6A_786O_Ctrl24H_20180106_JU_unmapped.bw
28.30 kB
iCount xlsites
demux_NNNNGCTTGTGCNNNNN_trimmed_single.bed.gz
137.27 kB
demux_NNNNGCTTGTGCNNNNN_trimmed_singleAndMulti.bed.gz
1.12 MB
demux_NNNNGCTTGTGCNNNNN_trimmed_skipped.bam
3.20 kB
demux_NNNNGCTTGTGCNNNNN_trimmed_single.bedgraph
494.96 kB
Cutadapt (single-end)
report.txt
673 B
fastqc
Directory
demux_NNNNGCTTGTGCNNNNN_trimmed.fastq.gz
21.51 MB
demux_NNNNGCTTGTGCNNNNN_trimmed_fastqc.zip
402.95 kB
iCount xlsites
m6a-786o-noq-24h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-noq-24h-20180106-ju_trimmed_single.bed.gz
78.30 kB
m6a-786o-noq-24h-20180106-ju_trimmed_singleAndMulti.bed.gz
119.86 kB
m6a-786o-noq-24h-20180106-ju_trimmed_single.bedgraph
189 B
STAR
demux_NNNNCAAGTNNN_trimmed_unmapped.out.mate1.fastq.gz
13.20 MB
demux_NNNNCAAGTNNN_trimmed.bam.bai
3.48 MB
demux_NNNNCAAGTNNN_trimmed_SJ.out.tab
142.83 kB
demux_NNNNCAAGTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCAAGTNNN_trimmed.bam
288.14 MB
iCount xlsites
m6a-786o-ctrl-24h-20180106-ju_trimmed_singleAndMulti.bed.gz
100.59 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_single.bed.gz
68.12 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_single.bedgraph
190 B
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNCAAGTNNN_trimmed.fastq.gz
42.04 MB
demux_NNNNCAAGTNNN_trimmed_fastqc.zip
437.16 kB
iCount reads proxy
m6A_786O_NoQ+DM-Akg15'_20180106_JU_unmapped.fastq.gz
8.41 MB
fastqc
Directory
m6A_786O_NoQ+DM-Akg15'_20180106_JU_unmapped_fastqc.zip
561.63 kB
stderr.txt
1.50 kB
Cutadapt (single-end)
m6a-786o-noq-24h-20180106-ju_trimmed.fastq.gz
95.57 MB
fastqc
Directory
report.txt
697 B
m6a-786o-noq-24h-20180106-ju_trimmed_fastqc.zip
453.17 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
674 B
demux_NNNNGCTTGTTANNNNN_trimmed_fastqc.zip
421.21 kB
demux_NNNNGCTTGTTANNNNN_trimmed.fastq.gz
24.69 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNTCCACNNN_trimmed.fastq.gz
63.40 MB
demux_NNNNTCCACNNN_trimmed_fastqc.zip
442.90 kB
iCount reads proxy
m6A_786O_NoQ15'_20180106_JU_unmapped.fastq.gz
6.86 MB
fastqc
Directory
stderr.txt
1.36 kB
m6A_786O_NoQ15'_20180106_JU_unmapped_fastqc.zip
524.77 kB
iCount summary
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
265 B
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
538.35 kB
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
644 B
STAR
demux_NNNNGAATANNN.bam.bai
3.70 MB
demux_NNNNGAATANNN_unmapped.out.mate1.fastq.gz
31.38 MB
demux_NNNNGAATANNN_stats.txt
1.80 kB
demux_NNNNGAATANNN_SJ.out.tab
144.70 kB
demux_NNNNGAATANNN.bam
358.81 MB
iCount summary
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_gene.tsv
640.69 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_type.tsv
265 B
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
642 B
iCount RNA-maps
results.tar.gz
1.64 MB
STAR
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
30.46 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bam.bai
2.67 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bam
136.26 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bw
26.07 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_SJ.out.tab
202.91 kB
STAR
m1a-786o-wtvhl-20180420-ju_trimmed.bam.bai
20.56 kB
m1a-786o-wtvhl-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
59.01 MB
m1a-786o-wtvhl-20180420-ju_trimmed_stats.txt
1.79 kB
m1a-786o-wtvhl-20180420-ju_trimmed_SJ.out.tab
0 B
m1a-786o-wtvhl-20180420-ju_trimmed.bam
682.14 MB
iCount RNA-maps
results.tar.gz
1.41 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
695 B
m1a-786o-wtvhl-20180420-ju_trimmed_fastqc.zip
501.81 kB
m1a-786o-wtvhl-20180420-ju_trimmed.fastq.gz
262.50 MB
iCount xlsites
m6a-786o-20180420-jufastqgz_unmapped_single.bed.gz
2.39 MB
m6a-786o-20180420-jufastqgz_unmapped_single.bedgraph
10.94 MB
m6a-786o-20180420-jufastqgz_unmapped_skipped.bam
3.98 kB
m6a-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
5.70 MB
iCount summary
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
647 B
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_type.tsv
269 B
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_gene.tsv
1006.21 kB
STAR
m6a-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
40.08 MB
m6a-786o-20180420-jufastqgz_unmapped.bam
238.26 MB
m6a-786o-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-786o-20180420-jufastqgz_unmapped_SJ.out.tab
849.76 kB
m6a-786o-20180420-jufastqgz_unmapped.bw
41.52 kB
m6a-786o-20180420-jufastqgz_unmapped.bam.bai
4.13 MB
iCount xlsites
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_skipped.bam
3.98 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bed.gz
1.85 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bedgraph
8.41 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
4.48 MB
iCount xlsites
m6a-786o-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-786o-20180420-ju_trimmed_single.bedgraph
190 B
m6a-786o-20180420-ju_trimmed_singleAndMulti.bed.gz
168.59 kB
m6a-786o-20180420-ju_trimmed_single.bed.gz
93.02 kB
iCount summary
demux_NNNNCACAGNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNCACAGNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNCACAGNNN_unique_summary.tsv_summary_gene.tsv
267.03 kB
STAR
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bam
184.92 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bam.bai
3.96 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
29.81 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bw
39.62 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_SJ.out.tab
689.87 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
iCount xlsites
demux_NNNNATCTGAGGNNNNN_trimmed_single.bed.gz
206.28 kB
demux_NNNNATCTGAGGNNNNN_trimmed_singleAndMulti.bed.gz
1.53 MB
demux_NNNNATCTGAGGNNNNN_trimmed_skipped.bam
3.15 kB
demux_NNNNATCTGAGGNNNNN_trimmed_single.bedgraph
757.03 kB
STAR
demux_NNNNCTGTANNN_trimmed_unmapped.out.mate1.fastq.gz
9.74 MB
demux_NNNNCTGTANNN_trimmed_stats.txt
1.80 kB
demux_NNNNCTGTANNN_trimmed.bam.bai
2.27 MB
demux_NNNNCTGTANNN_trimmed_SJ.out.tab
50.71 kB
demux_NNNNCTGTANNN_trimmed.bam
219.44 MB
iCount summary
demux_NNNNATCCANNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_subtype.tsv
647 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_gene.tsv
694.54 kB
Cutadapt (single-end)
report.txt
669 B
fastqc
Directory
demux_NNNNCTGTANNN_trimmed.fastq.gz
38.37 MB
demux_NNNNCTGTANNN_trimmed_fastqc.zip
433.95 kB
iCount xlsites
demux_NNNNAGTCCNNN_skipped.bam
8.57 MB
demux_NNNNAGTCCNNN_multi.bed.gz
6.14 MB
demux_NNNNAGTCCNNN_unique.bed.gz
2.36 MB
iCount summary
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_type.tsv
259 B
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_gene.tsv
264.02 kB
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_subtype.tsv
626 B
iCount xlsites
demux_NNNNGTAACNNN_trimmed_single.bedgraph
295.55 kB
demux_NNNNGTAACNNN_trimmed_singleAndMulti.bed.gz
601.53 kB
demux_NNNNGTAACNNN_trimmed_skipped.bam
3.07 kB
demux_NNNNGTAACNNN_trimmed_single.bed.gz
80.06 kB
iCount xlsites
demux_NNNNAACTCNNN_unique.bed.gz
40.67 kB
demux_NNNNAACTCNNN_skipped.bam
1.13 MB
demux_NNNNAACTCNNN_multi.bed.gz
430.80 kB
iCount xlsites
demux_NNNNCACAGNNN_skipped.bam
5.53 MB
demux_NNNNCACAGNNN_unique.bed.gz
1.37 MB
demux_NNNNCACAGNNN_multi.bed.gz
3.96 MB
iCount xlsites
demux_NNNNATCCANNN_skipped.bam
5.70 MB
demux_NNNNATCCANNN_unique.bed.gz
488.92 kB
demux_NNNNATCCANNN_unique.bedgraph
1.89 MB
demux_NNNNATCCANNN_multi.bed.gz
2.19 MB
iCount xlsites
demux_NNNNTCGCCNNN_skipped.bam
5.09 MB
demux_NNNNTCGCCNNN_unique.bed.gz
1.45 MB
demux_NNNNTCGCCNNN_multi.bed.gz
3.59 MB
iCount xlsites
demux_NNNNGGAGCNNN_multi.bed.gz
6.75 MB
demux_NNNNGGAGCNNN_unique.bed.gz
2.72 MB
demux_NNNNGGAGCNNN_skipped.bam
10.04 MB
iCount xlsites
demux_NNNNCCTGCNNN_skipped.bam
8.27 MB
demux_NNNNCCTGCNNN_multi.bed.gz
5.21 MB
demux_NNNNCCTGCNNN_unique.bed.gz
2.06 MB
iCount summary
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_gene.tsv
671.12 kB
iCount xlsites
demux_NNNNTGTATNNN_skipped.bam
1.55 MB
demux_NNNNTGTATNNN_multi.bed.gz
405.60 kB
demux_NNNNTGTATNNN_unique.bed.gz
50.86 kB
demux_NNNNTGTATNNN_unique.bedgraph
183.73 kB
STAR
demux_NNNNGTAACNNN_trimmed.bam.bai
2.11 MB
demux_NNNNGTAACNNN_trimmed.bam
62.41 MB
demux_NNNNGTAACNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTAACNNN_trimmed_unmapped.out.mate1.fastq.gz
7.13 MB
demux_NNNNGTAACNNN_trimmed_SJ.out.tab
62.97 kB
iCount summary
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_subtype.tsv
648 B
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_type.tsv
270 B
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.06 MB
STAR
demux_NNNNGGAGCNNN.bam.bai
4.53 MB
demux_NNNNGGAGCNNN_unmapped.out.mate1.fastq.gz
113.02 MB
demux_NNNNGGAGCNNN_stats.txt
1.82 kB
demux_NNNNGGAGCNNN.bam
2.77 GB
demux_NNNNGGAGCNNN_SJ.out.tab
359.62 kB
iCount peaks
demux_NNNNAGTCCNNN_unique_peaks.bed.gz
101.81 kB
demux_NNNNAGTCCNNN_unique_peaks.bedgraph
251.73 kB
demux_NNNNAGTCCNNN_unique_scores.tsv.gz
862.95 kB
iCount peaks
demux_NNNNGATCGNNN_unique_scores.tsv.gz
66.93 kB
demux_NNNNGATCGNNN_unique_peaks.bedgraph
28.44 kB
demux_NNNNGATCGNNN_unique_peaks.bed.gz
14.06 kB
iCount summary
demux_NNNNCATACNNN_unique_summary.tsv_summary_subtype.tsv
644 B
demux_NNNNCATACNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNCATACNNN_unique_summary.tsv_summary_gene.tsv
538.35 kB
STAR
demux_NNNNCTGTANNN_unmapped.out.mate1.fastq.gz
83.86 MB
demux_NNNNCTGTANNN.bam.bai
2.83 MB
demux_NNNNCTGTANNN.bam
812.06 MB
demux_NNNNCTGTANNN_SJ.out.tab
119.83 kB
demux_NNNNCTGTANNN_stats.txt
1.81 kB
iCount peaks
demux_NNNNGCTTGNNN_unique_scores.tsv.gz
67.95 kB
demux_NNNNGCTTGNNN_unique_peaks.bed.gz
13.05 kB
demux_NNNNGCTTGNNN_unique_peaks.bedgraph
25.39 kB
iCount xlsites
demux_NNNNGATCGNNN_multi.bed.gz
458.88 kB
demux_NNNNGATCGNNN_unique.bed.gz
54.29 kB
demux_NNNNGATCGNNN_skipped.bam
1.47 MB
demux_NNNNGATCGNNN_unique.bedgraph
197.37 kB
Reads (single-end)
GAM599A1-A30_S13_L002_R1_001.fastq.gz
16.45 GB
fastqc
Directory
stderr.txt
1.15 kB
GAM599A1-A30_S13_L002_R1_001_fastqc.zip
500.96 kB
iCount xlsites
demux_NNNNTCGCCNNN_skipped.bam
2.89 MB
demux_NNNNTCGCCNNN_multi.bed.gz
1.15 MB
demux_NNNNTCGCCNNN_unique.bed.gz
192.47 kB
demux_NNNNTCGCCNNN_unique.bedgraph
729.40 kB
iCount peaks
demux_NNNNTGTATNNN_unique_peaks.bed.gz
12.99 kB
demux_NNNNTGTATNNN_unique_scores.tsv.gz
62.53 kB
demux_NNNNTGTATNNN_unique_peaks.bedgraph
26.58 kB
iCount xlsites
demux_NNNNCAGGGNNN_multi.bed.gz
479.25 kB
demux_NNNNCAGGGNNN_skipped.bam
1.55 MB
demux_NNNNCAGGGNNN_unique.bedgraph
218.29 kB
demux_NNNNCAGGGNNN_unique.bed.gz
60.06 kB
iCount summary
demux_NNNNTATGANNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTATGANNN_unique_summary.tsv_summary_gene.tsv
534.25 kB
demux_NNNNTATGANNN_unique_summary.tsv_summary_subtype.tsv
645 B
iCount xlsites
demux_NNNNAGTCCNNN_skipped.bam
7.82 MB
demux_NNNNAGTCCNNN_unique.bed.gz
819.24 kB
demux_NNNNAGTCCNNN_multi.bed.gz
2.74 MB
demux_NNNNAGTCCNNN_unique.bedgraph
3.42 MB
iCount xlsites
demux_NNNNAGGCANNN_skipped.bam
9.02 MB
demux_NNNNAGGCANNN_multi.bed.gz
1.62 MB
demux_NNNNAGGCANNN_unique.bed.gz
308.83 kB
demux_NNNNAGGCANNN_unique.bedgraph
1.17 MB
iCount xlsites
demux_NNNNAACTCNNN_unique.bedgraph
1.54 MB
demux_NNNNAACTCNNN_unique.bed.gz
396.80 kB
demux_NNNNAACTCNNN_skipped.bam
6.64 MB
demux_NNNNAACTCNNN_multi.bed.gz
1.77 MB
iCount xlsites
demux_NNNNATCCANNN_unique.bed.gz
368.83 kB
demux_NNNNATCCANNN_unique.bedgraph
1.42 MB
demux_NNNNATCCANNN_multi.bed.gz
1.71 MB
demux_NNNNATCCANNN_skipped.bam
13.51 MB
iCount xlsites
demux_NNNNCCTGCNNN_multi.bed.gz
1.73 MB
demux_NNNNCCTGCNNN_skipped.bam
4.70 MB
demux_NNNNCCTGCNNN_unique.bed.gz
452.25 kB
demux_NNNNCCTGCNNN_unique.bedgraph
1.82 MB
iCount xlsites
demux_NNNNTGAAANNN_skipped.bam
7.24 MB
demux_NNNNTGAAANNN_unique.bedgraph
1.04 MB
demux_NNNNTGAAANNN_multi.bed.gz
1.57 MB
demux_NNNNTGAAANNN_unique.bed.gz
277.83 kB
iCount xlsites
demux_NNNNGCTTGNNN_multi.bed.gz
419.46 kB
demux_NNNNGCTTGNNN_unique.bedgraph
190.05 kB
demux_NNNNGCTTGNNN_unique.bed.gz
53.14 kB
demux_NNNNGCTTGNNN_skipped.bam
1.50 MB
iCount summary
demux_NNNNATACGNNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_gene.tsv
123.01 kB
iCount peaks
demux_NNNNAACTCNNN_unique_peaks.bed.gz
65.14 kB
demux_NNNNAACTCNNN_unique_scores.tsv.gz
470.87 kB
demux_NNNNAACTCNNN_unique_peaks.bedgraph
131.57 kB
iCount xlsites
demux_NNNNCTGATNNN_unique.bed.gz
61.40 kB
demux_NNNNCTGATNNN_skipped.bam
1.98 MB
demux_NNNNCTGATNNN_multi.bed.gz
486.20 kB
demux_NNNNCTGATNNN_unique.bedgraph
222.82 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTATGANNN.fastq.gz
282.16 MB
stderr.txt
975 B
demux_NNNNTATGANNN_fastqc.zip
502.13 kB
iCount summary
demux_NNNNCAGAANNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNCAGAANNN_unique_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNCAGAANNN_unique_summary.tsv_summary_gene.tsv
574.65 kB
iCount xlsites
demux_NNNNTCACANNN_skipped.bam
9.32 MB
demux_NNNNTCACANNN_unique.bed.gz
286.10 kB
demux_NNNNTCACANNN_unique.bedgraph
1.08 MB
demux_NNNNTCACANNN_multi.bed.gz
1.53 MB
Reads (single-end)
demux_NNNNAACTCNNN.fastq.gz
343.90 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNAACTCNNN_fastqc.zip
472.76 kB
iCount xlsites
demux_NNNNCAGAANNN_skipped.bam
9.59 MB
demux_NNNNCAGAANNN_unique.bed.gz
320.98 kB
demux_NNNNCAGAANNN_unique.bedgraph
1.21 MB
demux_NNNNCAGAANNN_multi.bed.gz
1.76 MB
iCount summary
demux_NNNNTGTATNNN_unique_summary.tsv_summary_gene.tsv
91.94 kB
demux_NNNNTGTATNNN_unique_summary.tsv_summary_subtype.tsv
622 B
demux_NNNNTGTATNNN_unique_summary.tsv_summary_type.tsv
259 B
Reads (single-end)
fastqc
Directory
demux_NNNNTCCACNNN.fastq.gz
48.56 MB
stderr.txt
975 B
demux_NNNNTCCACNNN_fastqc.zip
451.94 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNAGTTANNN.fastq.gz
376.84 MB
demux_NNNNAGTTANNN_fastqc.zip
470.86 kB
iCount summary
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_subtype.tsv
645 B
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_gene.tsv
353.59 kB
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_type.tsv
267 B
Reads (single-end)
demux_NNNNATCTGNNN_fastqc.zip
487.40 kB
fastqc
Directory
stderr.txt
975 B
demux_NNNNATCTGNNN.fastq.gz
52.59 MB
iCount xlsites
demux_NNNNCACAGNNN_multi.bed.gz
799.14 kB
demux_NNNNCACAGNNN_unique.bed.gz
103.91 kB
demux_NNNNCACAGNNN_unique.bedgraph
374.93 kB
demux_NNNNCACAGNNN_skipped.bam
4.90 MB
Reads (single-end)
demux_NNNNCACAGNNN.fastq.gz
318.03 MB
fastqc
Directory
demux_NNNNCACAGNNN_fastqc.zip
423.69 kB
stderr.txt
975 B
iCount peaks
demux_NNNNCTGATNNN_unique_peaks.bed.gz
15.87 kB
demux_NNNNCTGATNNN_unique_peaks.bedgraph
32.08 kB
demux_NNNNCTGATNNN_unique_scores.tsv.gz
77.18 kB
iCount xlsites
demux_NNNNATCTGNNN_unique.bed.gz
54.50 kB
demux_NNNNATCTGNNN_multi.bed.gz
467.53 kB
demux_NNNNATCTGNNN_skipped.bam
1.03 MB
demux_NNNNATCTGNNN_unique.bedgraph
197.02 kB
STAR
demux_NNNNAACTCNNN.bam.bai
3.82 MB
demux_NNNNAACTCNNN.bam
2.17 GB
demux_NNNNAACTCNNN_unmapped.out.mate1.fastq.gz
90.98 MB
demux_NNNNAACTCNNN_SJ.out.tab
176.80 kB
demux_NNNNAACTCNNN_stats.txt
1.81 kB
STAR
demux_NNNNGCTTGNNN_unmapped.out.mate1.fastq.gz
42.07 MB
demux_NNNNGCTTGNNN_SJ.out.tab
18.68 kB
demux_NNNNGCTTGNNN.bam
311.18 MB
demux_NNNNGCTTGNNN.bam.bai
1.85 MB
demux_NNNNGCTTGNNN_stats.txt
1.81 kB
STAR
demux_NNNNCCTGCNNN_unmapped.out.mate1.fastq.gz
61.65 MB
demux_NNNNCCTGCNNN.bam.bai
3.43 MB
demux_NNNNCCTGCNNN_stats.txt
1.81 kB
demux_NNNNCCTGCNNN.bam
1.58 GB
demux_NNNNCCTGCNNN_SJ.out.tab
202.32 kB
STAR
demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz
15.99 MB
demux_NNNNTCCACNNN.bam.bai
2.14 MB
demux_NNNNTCCACNNN_SJ.out.tab
51.41 kB
demux_NNNNTCCACNNN_stats.txt
1.80 kB
demux_NNNNTCCACNNN.bam
259.24 MB
STAR
demux_NNNNGTAACNNN.bam.bai
3.03 MB
demux_NNNNGTAACNNN_unmapped.out.mate1.fastq.gz
115.88 MB
demux_NNNNGTAACNNN.bam
1.12 GB
demux_NNNNGTAACNNN_stats.txt
1.81 kB
demux_NNNNGTAACNNN_SJ.out.tab
153.05 kB
iCount peaks
demux_NNNNATCTGNNN_unique_peaks.bedgraph
25.61 kB
demux_NNNNATCTGNNN_unique_scores.tsv.gz
68.98 kB
demux_NNNNATCTGNNN_unique_peaks.bed.gz
12.90 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTGAAANNN_fastqc.zip
475.11 kB
demux_NNNNTGAAANNN.fastq.gz
75.97 MB
FASTQ file (single-end)
stderr.txt
1.79 kB
fastqc
Directory
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju.fastq.gz
2.22 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_fastqc.zip
527.83 kB
iCount peaks
demux_NNNNGTAGANNN_unique_peaks.bed.gz
69.41 kB
demux_NNNNGTAGANNN_unique_peaks.bedgraph
150.79 kB
demux_NNNNGTAGANNN_unique_scores.tsv.gz
478.38 kB
iCount peaks
demux_NNNNCATACNNN_unique_peaks.bedgraph
159.49 kB
demux_NNNNCATACNNN_unique_scores.tsv.gz
398.70 kB
demux_NNNNCATACNNN_unique_peaks.bed.gz
71.13 kB
iCount summary
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
367.06 kB
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_type.tsv
260 B
iCount summary
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
261 B
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
410.90 kB
iCount xlsites
demux_NNNNCAAGTNNN_unique.bedgraph
1.36 MB
demux_NNNNCAAGTNNN_skipped.bam
730.92 kB
demux_NNNNCAAGTNNN_unique.bed.gz
358.57 kB
demux_NNNNCAAGTNNN_multi.bed.gz
2.00 MB
iCount summary
demux_NNNNTCACANNN_unique_summary.tsv_summary_subtype.tsv
648 B
demux_NNNNTCACANNN_unique_summary.tsv_summary_gene.tsv
884.05 kB
demux_NNNNTCACANNN_unique_summary.tsv_summary_type.tsv
269 B
STAR
demux_NNNNTGAAANNN.bam.bai
4.22 MB
demux_NNNNTGAAANNN_unmapped.out.mate1.fastq.gz
43.88 MB
demux_NNNNTGAAANNN_SJ.out.tab
264.46 kB
demux_NNNNTGAAANNN.bam
224.83 MB
demux_NNNNTGAAANNN_stats.txt
1.81 kB
iCount xlsites
demux_NNNNGCTTGATTNNNNN_skipped.bam
664.59 kB
demux_NNNNGCTTGATTNNNNN_unique.bedgraph
613.50 kB
demux_NNNNGCTTGATTNNNNN_unique.bed.gz
168.64 kB
demux_NNNNGCTTGATTNNNNN_multi.bed.gz
1.35 MB
iCount summary
demux_NNNNGAATANNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_gene.tsv
658.28 kB
demux_NNNNGAATANNN_unique_summary.tsv_summary_subtype.tsv
637 B
iCount summary
demux_NNNNAGTTANNN_unique_summary.tsv_summary_type.tsv
270 B
demux_NNNNAGTTANNN_unique_summary.tsv_summary_gene.tsv
1.04 MB
demux_NNNNAGTTANNN_unique_summary.tsv_summary_subtype.tsv
651 B
iCount annotate
m6A_Ctrl_4hrs_2Reps_grouped_annotated.bed.gz
3.33 MB
m6A_Ctrl_4hrs_2Reps_grouped_annotated.bedgraph
11.17 MB
iCount annotate
m6A_NoQ_4hrs_2Reps_grouped_annotated.bed.gz
4.61 MB
m6A_NoQ_4hrs_2Reps_grouped_annotated.bedgraph
15.96 MB
Cutadapt (single-end)
report.txt
669 B
fastqc
Directory
demux_NNNNACCTTNNN_trimmed.fastq.gz
35.80 MB
demux_NNNNACCTTNNN_trimmed_fastqc.zip
464.51 kB
iCount peaks
m6A_NoQ+DM-Akg_4hrs_2Reps_grouped_scores.tsv.gz
2.66 MB
m6A_NoQ+DM-Akg_4hrs_2Reps_grouped_peaks.bed.gz
482.52 kB
m6A_NoQ+DM-Akg_4hrs_2Reps_grouped_peaks.bedgraph
1.79 MB
iCount annotate
m1A_Ctrl_15min_2Reps_grouped_annotated.bedgraph
815.51 kB
m1A_Ctrl_15min_2Reps_grouped_annotated.bed.gz
293.03 kB
iCount summary
test2_m6A_786O_NoQ4hrs_2reps_grouped_summary.tsv_summary_subtype.tsv
647 B
test2_m6A_786O_NoQ4hrs_2reps_grouped_summary.tsv_summary_type.tsv
272 B
test2_m6A_786O_NoQ4hrs_2reps_grouped_summary.tsv_summary_gene.tsv
1.09 MB
iCount xlsites
demux_NNNNAGACTNNN_trimmed_single.bed.gz
184.99 kB
demux_NNNNAGACTNNN_trimmed_single.bedgraph
702.55 kB
demux_NNNNAGACTNNN_trimmed_skipped.bam
3.17 kB
demux_NNNNAGACTNNN_trimmed_singleAndMulti.bed.gz
1.22 MB
iCount annotate
test2_m6A_786O_NoQ4hrs_2reps_grouped_annotated.bed.gz
4.61 MB
test2_m6A_786O_NoQ4hrs_2reps_grouped_annotated.bedgraph
15.94 MB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
demux_NNNNGTATTNNN_trimmed.fastq.gz
57.63 MB
demux_NNNNGTATTNNN_trimmed_fastqc.zip
505.25 kB
iCount summary
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_subtype.tsv
641 B
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_gene.tsv
675.05 kB
iCount annotate
m6A_NoQ_24H_20180106_JU_1Rep_grouped_annotated.bed.gz
2.82 MB
m6A_NoQ_24H_20180106_JU_1Rep_grouped_annotated.bedgraph
9.53 MB
iCount xlsites
demux_NNNNGCTTGCTGNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_single.bed.gz
132.11 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_singleAndMulti.bed.gz
1.11 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_single.bedgraph
474.67 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNAGGCANNN_trimmed_fastqc.zip
436.44 kB
demux_NNNNAGGCANNN_trimmed.fastq.gz
98.93 MB
report.txt
670 B
iCount xlsites
demux_NNNNTGCGTNNN_trimmed_single.bed.gz
323.58 kB
demux_NNNNTGCGTNNN_trimmed_singleAndMulti.bed.gz
2.03 MB
demux_NNNNTGCGTNNN_trimmed_single.bedgraph
1.22 MB
demux_NNNNTGCGTNNN_trimmed_skipped.bam
2.91 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTTTAANNN.fastq.gz
38.94 MB
demux_NNNNTTTAANNN_fastqc.zip
487.16 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNAGACTNNN_trimmed.fastq.gz
21.84 MB
demux_NNNNAGACTNNN_trimmed_fastqc.zip
436.68 kB
iCount summary
demux_NNNNATCTGAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
629 B
demux_NNNNATCTGAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
442.30 kB
demux_NNNNATCTGAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
260 B
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNCATTTNNN_trimmed_fastqc.zip
461.72 kB
demux_NNNNCATTTNNN_trimmed.fastq.gz
24.05 MB
iCount xlsites
demux_NNNNCATTTNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCATTTNNN_trimmed_single.bedgraph
795.85 kB
demux_NNNNCATTTNNN_trimmed_singleAndMulti.bed.gz
1.46 MB
demux_NNNNCATTTNNN_trimmed_single.bed.gz
211.73 kB
iCount xlsites
demux_NNNNGCTTGTTANNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGCTTGTTANNNNN_trimmed_single.bed.gz
145.54 kB
demux_NNNNGCTTGTTANNNNN_trimmed_singleAndMulti.bed.gz
1.17 MB
demux_NNNNGCTTGTTANNNNN_trimmed_single.bedgraph
525.19 kB
iCount summary
demux_NNNNACCTTNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNACCTTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNACCTTNNN_trimmed_single_summary.tsv_summary_gene.tsv
543.58 kB
iCount xlsites
demux_NNNNTTTAANNN_trimmed_single.bed.gz
311.90 kB
demux_NNNNTTTAANNN_trimmed_skipped.bam
3.30 kB
demux_NNNNTTTAANNN_trimmed_singleAndMulti.bed.gz
1.99 MB
demux_NNNNTTTAANNN_trimmed_single.bedgraph
1.16 MB
iCount xlsites
demux_NNNNCCGGANNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCCGGANNN_trimmed_single.bed.gz
243.70 kB
demux_NNNNCCGGANNN_trimmed_single.bedgraph
911.05 kB
demux_NNNNCCGGANNN_trimmed_singleAndMulti.bed.gz
1.61 MB
STAR
demux_NNNNAGACTNNN_trimmed.bam.bai
2.61 MB
demux_NNNNAGACTNNN_trimmed.bam
146.79 MB
demux_NNNNAGACTNNN_trimmed_unmapped.out.mate1.fastq.gz
6.94 MB
demux_NNNNAGACTNNN_trimmed_SJ.out.tab
72.10 kB
demux_NNNNAGACTNNN_trimmed_stats.txt
1.80 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNTTTAANNN_trimmed.fastq.gz
35.55 MB
demux_NNNNTTTAANNN_trimmed_fastqc.zip
455.45 kB
iCount summary
demux_NNNNGCTTGTTANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
343.80 kB
demux_NNNNGCTTGTTANNNNN_trimmed_single_summary.tsv_summary_type.tsv
260 B
demux_NNNNGCTTGTTANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
iCount summary
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
622 B
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
321.90 kB
iCount summary
demux_NNNNCCGGANNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNCCGGANNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNCCGGANNN_trimmed_single_summary.tsv_summary_gene.tsv
506.92 kB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
demux_NNNNCCGGANNN_trimmed.fastq.gz
105.88 MB
demux_NNNNCCGGANNN_trimmed_fastqc.zip
435.64 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNTCCACNNN_trimmed.fastq.gz
63.39 MB
report.txt
670 B
demux_NNNNTCCACNNN_trimmed_fastqc.zip
426.54 kB
iCount xlsites
demux_NNNNGCTTGATTNNNNN_trimmed_single.bed.gz
183.49 kB
demux_NNNNGCTTGATTNNNNN_trimmed_skipped.bam
3.70 kB
demux_NNNNGCTTGATTNNNNN_trimmed_singleAndMulti.bed.gz
1.41 MB
demux_NNNNGCTTGATTNNNNN_trimmed_single.bedgraph
670.50 kB
iCount annotate
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_annotated.bed.gz
397.18 kB
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_annotated.bedgraph
1.05 MB
iCount annotate
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_annotated.bed.gz
530.40 kB
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_annotated.bedgraph
1.47 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
demux_NNNNGTAACNNN_trimmed.fastq.gz
14.96 MB
demux_NNNNGTAACNNN_trimmed_fastqc.zip
472.10 kB
iCount annotate
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_annotated.bed.gz
456.81 kB
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_annotated.bedgraph
1.22 MB
iCount summary
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
634 B
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_type.tsv
265 B
Input_NoQ 24hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
526.32 kB
iCount peaks
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_peaks.bed.gz
163.12 kB
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_scores.tsv.gz
1.35 MB
m6A_Ctrl_24H_20180106_JU_1Rep_grouped_peaks.bedgraph
563.31 kB
iCount annotate
Input_NoQ 15min_20180223_JU_1Rep_grouped_annotated.bedgraph
1.16 MB
Input_NoQ 15min_20180223_JU_1Rep_grouped_annotated.bed.gz
450.18 kB
iCount annotate
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_annotated.bed.gz
3.45 MB
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_annotated.bedgraph
11.83 MB
iCount summary
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_summary.tsv_summary_type.tsv
270 B
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
650 B
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
955.68 kB
iCount peaks
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_peaks.bed.gz
365.55 kB
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_peaks.bedgraph
1.39 MB
m6A_NoQ_+_DM-Akg_24H_20180106_JU_1Rep_grouped_scores.tsv.gz
2.22 MB
iCount peaks
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_scores.tsv.gz
235.54 kB
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_peaks.bed.gz
42.35 kB
m1A_786O_Ctrl 15min_20180413_JU_1Rep_grouped_peaks.bedgraph
93.44 kB
iCount peaks
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_peaks.bed.gz
15.74 kB
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_scores.tsv.gz
73.42 kB
m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_peaks.bedgraph
31.96 kB
iCount peaks
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_peaks.bed.gz
70.92 kB
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_peaks.bedgraph
159.18 kB
m1A_786O_NoQ 15min_20180413_JU_1Rep_grouped_scores.tsv.gz
398.87 kB
iCount peaks
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_scores.tsv.gz
450.60 kB
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_peaks.bedgraph
184.12 kB
m1A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_peaks.bed.gz
80.98 kB
iCount annotate
Input_Control 24hrs_20180223_JU_1Rep_grouped_annotated.bed.gz
560.20 kB
Input_Control 24hrs_20180223_JU_1Rep_grouped_annotated.bedgraph
1.46 MB
iCount annotate
m6A_786O__Ctrl_7Reps_grouped_annotated.bed.gz
6.27 MB
m6A_786O__Ctrl_7Reps_grouped_annotated.bedgraph
22.08 MB
iCount summary
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
534.25 kB
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
268 B
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
645 B
iCount summary
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
264 B
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
639 B
m62A_786O_NoQ 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
522.94 kB
iCount annotate
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_annotated.bedgraph
1.08 MB
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_annotated.bed.gz
413.23 kB
iCount peaks
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_peaks.bedgraph
155.00 kB
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_scores.tsv.gz
391.49 kB
m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_peaks.bed.gz
70.15 kB
iCount summary
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
265 B
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
637 B
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
535.83 kB
iCount peaks
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_peaks.bed.gz
62.65 kB
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_peaks.bedgraph
136.03 kB
m62A_786O_NoQ 15min_20180413_JU_1Rep_grouped_scores.tsv.gz
443.10 kB
iCount annotate
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_annotated.bed.gz
447.23 kB
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_annotated.bedgraph
1.18 MB
iCount summary
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_type.tsv
265 B
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
638 B
m62A_786O_Ctrl 4H_20180413_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
574.65 kB
iCount peaks
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_peaks.bed.gz
48.76 kB
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_scores.tsv.gz
355.13 kB
m62A_786O_NoQ plus DM-Akg 15min_20180413_JU_1Rep_grouped_peaks.bedgraph
102.05 kB
iCount annotate
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_annotated.bed.gz
308.44 kB
Input_NoQ plus DM-Akg 15min_20180223_JU_1Rep_grouped_annotated.bedgraph
795.85 kB
iCount peaks
IgG_786O__20180420_JU_IgG_grouped_scores.tsv.gz
172.18 kB
IgG_786O__20180420_JU_IgG_grouped_peaks.bed.gz
18.25 kB
IgG_786O__20180420_JU_IgG_grouped_peaks.bedgraph
31.54 kB
iCount peaks
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_peaks.bed.gz
52.73 kB
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_scores.tsv.gz
382.00 kB
m62A_786O_NoQ plus DM-Akg 4H_20180413_JU_1Rep_grouped_peaks.bedgraph
110.71 kB
iCount summary
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_type.tsv
264 B
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
636 B
Input_NoQ plus DM-Akg 4hrs_20180223_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
579.56 kB
iCount peaks
m6A_786O__20180420_JU_1Rep_grouped_scores.tsv.gz
117.57 kB
m6A_786O__20180420_JU_1Rep_grouped_peaks.bedgraph
15.48 kB
m6A_786O__20180420_JU_1Rep_grouped_peaks.bed.gz
8.45 kB
iCount annotate
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_annotated.bed.gz
595.51 kB
m6A_786O_Ctrl 15min_20180106_JU_20180413_JU_2Reps_grouped_annotated.bedgraph
1.58 MB
iCount peaks
m6A_786O__Ctrl_7Reps_grouped_peaks.bed.gz
843.25 kB
m6A_786O__Ctrl_7Reps_grouped_scores.tsv.gz
4.00 MB
m6A_786O__Ctrl_7Reps_grouped_peaks.bedgraph
3.35 MB
iCount summary
Input_786O_Control-(completeDMEM)_6Reps_grouped_summary.tsv_summary_gene.tsv
1.06 MB
Input_786O_Control-(completeDMEM)_6Reps_grouped_summary.tsv_summary_type.tsv
266 B
Input_786O_Control-(completeDMEM)_6Reps_grouped_summary.tsv_summary_subtype.tsv
649 B
Cutadapt (single-end)
fastqc
Directory
m6a-786o-ctrl-3-20180106-ju_trimmed.fastq.gz
58.99 MB
report.txt
696 B
m6a-786o-ctrl-3-20180106-ju_trimmed_fastqc.zip
461.45 kB
iCount reads proxy
fastqc
Directory
IgG_786O_RabbitIgG_20180106_JU_unmapped.fastq.gz
2.68 MB
IgG_786O_RabbitIgG_20180106_JU_unmapped_fastqc.zip
596.83 kB
stderr.txt
1.42 kB
iCount reads proxy
fastqc
Directory
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped.fastq.gz
38.18 MB
stderr.txt
1.48 kB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_fastqc.zip
422.57 kB
Reads (single-end)
fastqc
Directory
m6a-786o-noq-3-20180106-ju.fastq.gz
59.69 MB
stderr.txt
1.11 kB
m6a-786o-noq-3-20180106-ju_fastqc.zip
457.47 kB
iCount reads proxy
fastqc
Directory
m6A_786O_Ctrl4H_20180106_JU_unmapped.fastq.gz
33.37 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_fastqc.zip
422.28 kB
stderr.txt
1.36 kB
STAR
m6a-786o-noq-15-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
6.86 MB
m6a-786o-noq-15-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-15-20180106-ju_trimmed.bam.bai
19.51 kB
m6a-786o-noq-15-20180106-ju_trimmed.bam
47.45 MB
m6a-786o-noq-15-20180106-ju_trimmed.bw
105.94 kB
m6a-786o-noq-15-20180106-ju_trimmed_SJ.out.tab
0 B
iCount summary
m6A_786O_Ctrl4H_20180106_JU_unmapped_single_summary_gene.tsv
908.55 kB
m6A_786O_Ctrl4H_20180106_JU_unmapped_single_summary_subtype.tsv
647 B
m6A_786O_Ctrl4H_20180106_JU_unmapped_single_summary_type.tsv
271 B
iCount reads proxy
fastqc
Directory
m6A_786O_Ctrl24H_20180106_JU_unmapped.fastq.gz
18.18 MB
stderr.txt
1.38 kB
m6A_786O_Ctrl24H_20180106_JU_unmapped_fastqc.zip
466.32 kB
Cutadapt (single-end)
m6a-786o-ctrl-24h-20180106-ju_trimmed.fastq.gz
60.69 MB
fastqc
Directory
report.txt
697 B
m6a-786o-ctrl-24h-20180106-ju_trimmed_fastqc.zip
437.90 kB
iCount reads proxy
fastqc
Directory
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.fastq.gz
89.10 MB
stderr.txt
1.48 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_fastqc.zip
498.34 kB
FASTQ file (single-end)
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju.fastq.gz
61.01 MB
fastqc
Directory
stderr.txt
1.77 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_fastqc.zip
576.82 kB
iCount reads proxy
fastqc
Directory
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
10.31 MB
stderr.txt
2.14 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
535.28 kB
iCount RNA-maps
results.tar.gz
230.79 kB
FASTQ file (single-end)
stderr.txt
755 B
fastqc
Directory
nomatch_fastqc.zip
608.70 kB
nomatch.fastq.gz
3.90 GB
iCount RNA-maps
results.tar.gz
341.53 kB
Cutadapt (single-end)
report.txt
689 B
fastqc
Directory
m6a-786o-20180420-ju_trimmed_fastqc.zip
477.03 kB
m6a-786o-20180420-ju_trimmed.fastq.gz
405.44 MB
iCount xlsites
m6a-786o-wtvhl-20180420-ju_trimmed_singleAndMulti.bed.gz
155.72 kB
m6a-786o-wtvhl-20180420-ju_trimmed_single.bed.gz
87.06 kB
m6a-786o-wtvhl-20180420-ju_trimmed_single.bedgraph
202 B
m6a-786o-wtvhl-20180420-ju_trimmed_skipped.bam
3.97 kB
STAR
m6a-786o-wtvhl-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
89.10 MB
m6a-786o-wtvhl-20180420-ju_trimmed.bam
487.37 MB
m6a-786o-wtvhl-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-786o-wtvhl-20180420-ju_trimmed_SJ.out.tab
0 B
m6a-786o-wtvhl-20180420-ju_trimmed_stats.txt
1.79 kB
Cutadapt (single-end)
m6a-786o-wtvhl-20180420-ju_trimmed.fastq.gz
298.04 MB
fastqc
Directory
report.txt
695 B
m6a-786o-wtvhl-20180420-ju_trimmed_fastqc.zip
487.00 kB
iCount RNA-maps
results.tar.gz
226.97 kB
iCount xlsites
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_single.bed.gz
81.43 kB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_single.bedgraph
198 B
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_singleAndMulti.bed.gz
124.69 kB
STAR
demux_NNNNAGACTNNN_trimmed.bam.bai
2.61 MB
demux_NNNNAGACTNNN_trimmed.bam
146.79 MB
demux_NNNNAGACTNNN_trimmed_unmapped.out.mate1.fastq.gz
6.94 MB
demux_NNNNAGACTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNAGACTNNN_trimmed_SJ.out.tab
72.10 kB
Reads (single-end)
m6a-786o-noq-dm-akg-15-20180106-ju.fastq.gz
40.36 MB
fastqc
Directory
stderr.txt
1.26 kB
m6a-786o-noq-dm-akg-15-20180106-ju_fastqc.zip
540.82 kB
Reads (single-end)
m6a-786o-noq-4h-20180106-ju.fastq.gz
137.18 MB
stderr.txt
1.13 kB
fastqc
Directory
m6a-786o-noq-4h-20180106-ju_fastqc.zip
439.53 kB
Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNATCTGATTNNNNN.fastq.gz
42.16 MB
demux_NNNNATCTGATTNNNNN_fastqc.zip
414.44 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCGTNNNNN.fastq.gz
17.81 MB
demux_NNNNGCTTGCGTNNNNN_fastqc.zip
414.74 kB
stderr.txt
1.05 kB
iCount peaks
m6A_NoQ_4hrs_2Reps_grouped_peaks.bedgraph
2.21 MB
m6A_NoQ_4hrs_2Reps_grouped_scores.tsv.gz
2.97 MB
m6A_NoQ_4hrs_2Reps_grouped_peaks.bed.gz
577.02 kB
iCount peaks
demux_NNNNCCGGANNN_unique_peaks.bedgraph
24.67 kB
demux_NNNNCCGGANNN_unique_scores.tsv.gz
183.60 kB
demux_NNNNCCGGANNN_unique_peaks.bed.gz
11.72 kB
iCount peaks
demux_NNNNTCCACNNN_unique_peaks.bed.gz
11.95 kB
demux_NNNNTCCACNNN_unique_scores.tsv.gz
143.46 kB
demux_NNNNTCCACNNN_unique_peaks.bedgraph
23.39 kB
iCount summary
m6A_NoQ_15min_20180106_JU_1Rep_grouped_summary.tsv_summary_type.tsv
257 B
m6A_NoQ_15min_20180106_JU_1Rep_grouped_summary.tsv_summary_subtype.tsv
621 B
m6A_NoQ_15min_20180106_JU_1Rep_grouped_summary.tsv_summary_gene.tsv
145.43 kB
iCount peaks
m6A_NoQ_15min_20180106_JU_1Rep_grouped_scores.tsv.gz
62.69 kB
m6A_NoQ_15min_20180106_JU_1Rep_grouped_peaks.bed.gz
73.09 kB
m6A_NoQ_15min_20180106_JU_1Rep_grouped_peaks.bedgraph
146.47 kB
iCount xlsites
demux_NNNNATCTGTTANNNNN_skipped.bam
553.25 kB
demux_NNNNATCTGTTANNNNN_unique.bedgraph
552.40 kB
demux_NNNNATCTGTTANNNNN_unique.bed.gz
152.41 kB
demux_NNNNATCTGTTANNNNN_multi.bed.gz
1.24 MB
iCount xlsites
demux_NNNNCATACNNN_skipped.bam
7.07 MB
demux_NNNNCATACNNN_multi.bed.gz
1.73 MB
demux_NNNNCATACNNN_unique.bedgraph
1.28 MB
demux_NNNNCATACNNN_unique.bed.gz
338.17 kB
STAR
demux_NNNNATCCANNN_unmapped.out.mate1.fastq.gz
110.28 MB
demux_NNNNATCCANNN.bam.bai
3.29 MB
demux_NNNNATCCANNN.bam
1.21 GB
demux_NNNNATCCANNN_stats.txt
1.81 kB
demux_NNNNATCCANNN_SJ.out.tab
254.52 kB
STAR
demux_NNNNGTAACNNN_unmapped.out.mate1.fastq.gz
108.60 MB
demux_NNNNGTAACNNN.bam.bai
5.15 MB
demux_NNNNGTAACNNN_stats.txt
1.82 kB
demux_NNNNGTAACNNN.bam
3.02 GB
demux_NNNNGTAACNNN_SJ.out.tab
939.07 kB
FASTQ file (single-end)
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju.fastq.gz
1.31 MB
fastqc
Directory
stderr.txt
1.82 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_fastqc.zip
530.05 kB
iCount summary
demux_NNNNGTAGANNN_unique_summary.tsv_summary_subtype.tsv
645 B
demux_NNNNGTAGANNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNGTAGANNN_unique_summary.tsv_summary_gene.tsv
803.19 kB
STAR
demux_NNNNGTTTCNNN.bam.bai
3.65 MB
demux_NNNNGTTTCNNN_unmapped.out.mate1.fastq.gz
84.32 MB
demux_NNNNGTTTCNNN_stats.txt
1.81 kB
demux_NNNNGTTTCNNN.bam
2.04 GB
demux_NNNNGTTTCNNN_SJ.out.tab
169.46 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCCANNN.fastq.gz
267.82 MB
stderr.txt
975 B
demux_NNNNATCCANNN_fastqc.zip
454.39 kB
iCount summary
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_gene.tsv
573.98 kB
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
STAR
demux_NNNNTCACANNN_trimmed_unmapped.out.mate1.fastq.gz
9.49 MB
demux_NNNNTCACANNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCACANNN_trimmed.bam.bai
2.66 MB
demux_NNNNTCACANNN_trimmed_SJ.out.tab
139.89 kB
demux_NNNNTCACANNN_trimmed.bam
246.37 MB
iCount reads proxy
fastqc
Directory
stderr.txt
2.14 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
548.96 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
13.26 MB
iCount RNA-maps
results.tar.gz
340.20 kB
iCount xlsites
demux_NNNNAGGCANNN_trimmed_single.bedgraph
1.55 MB
demux_NNNNAGGCANNN_trimmed_skipped.bam
2.93 kB
demux_NNNNAGGCANNN_trimmed_singleAndMulti.bed.gz
3.58 MB
demux_NNNNAGGCANNN_trimmed_single.bed.gz
404.43 kB
demux_NNNNAGGCANNN_trimmed_reads_single.bed.gz
470.76 kB
iCount reads proxy
fastqc
Directory
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped.fastq.gz
43.99 MB
stderr.txt
1.67 kB
m62a_786o_noq-plus-dm-akg-15min_20180413_ju_unmapped_fastqc.zip
528.21 kB

m1A_786O__20180420_JU

Cutadapt (single-end)
fastqc
Directory
m1a-786o-20180420-ju_trimmed_fastqc.zip
502.34 kB
report.txt
689 B
m1a-786o-20180420-ju_trimmed.fastq.gz
418.90 MB
STAR
m1a-786o-20180420-jufastqgz_unmapped.bam.bai
2.91 MB
m1a-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
53.96 MB
m1a-786o-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m1a-786o-20180420-jufastqgz_unmapped.bam
218.87 MB
m1a-786o-20180420-jufastqgz_unmapped.bw
28.36 kB
m1a-786o-20180420-jufastqgz_unmapped_SJ.out.tab
305.87 kB
iCount xlsites
m1a-786o-20180420-jufastqgz_unmapped_single.bed.gz
583.11 kB
m1a-786o-20180420-jufastqgz_unmapped_skipped.bam
7.15 kB
m1a-786o-20180420-jufastqgz_unmapped_single.bedgraph
2.27 MB
m1a-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
1.67 MB
iCount xlsites
m1a-786o-20180420-jufastqgz_unmapped_skipped.bam
5.59 kB
m1a-786o-20180420-jufastqgz_unmapped_single.bedgraph
585.78 kB
m1a-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
673.49 kB
m1a-786o-20180420-jufastqgz_unmapped_single.bed.gz
161.53 kB
m1a-786o-20180420-jufastqgz_unmapped_reads_single.bed.gz
170.01 kB
iCount RNA-maps
results.tar.gz
639.42 kB
iCount reads proxy
fastqc
Directory
m1a-786o-20180420-jufastqgz_unmapped.fastq.gz
96.98 MB
stderr.txt
1.36 kB
m1a-786o-20180420-jufastqgz_unmapped_fastqc.zip
508.10 kB
FASTQ file (single-end)
m1a-786o-20180420-ju_fastqc.zip
544.33 kB
m1a-786o-20180420-ju.fastq.gz
426.75 MB
fastqc
Directory
stderr.txt
1015 B
iCount xlsites
m1a-786o-20180420-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-20180420-ju_trimmed_single.bedgraph
190 B
m1a-786o-20180420-ju_trimmed_single.bed.gz
106.01 kB
m1a-786o-20180420-ju_trimmed_singleAndMulti.bed.gz
183.10 kB
STAR
m1a-786o-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
96.98 MB
m1a-786o-20180420-ju_trimmed.bam
1.08 GB
m1a-786o-20180420-ju_trimmed.bam.bai
20.56 kB
m1a-786o-20180420-ju_trimmed_stats.txt
1.79 kB
m1a-786o-20180420-ju_trimmed_SJ.out.tab
0 B
iCount summary
m1a-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
645 B
m1a-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
753.15 kB
m1a-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
267 B
STAR
m1a-786o-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-20180420-jufastqgz_unmapped.bam
103.98 MB
m1a-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
37.30 MB
m1a-786o-20180420-jufastqgz_unmapped.bam.bai
2.01 MB
m1a-786o-20180420-jufastqgz_unmapped_SJ.out.tab
118.10 kB
m1a-786o-20180420-jufastqgz_unmapped.bw
25.16 kB
iCount reads proxy
fastqc
Directory
m1a-786o-20180420-jufastqgz_unmapped.fastq.gz
47.07 MB
stderr.txt
1.36 kB
m1a-786o-20180420-jufastqgz_unmapped_fastqc.zip
527.45 kB
iCount summary
m1a-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
460 B
m1a-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
1.00 kB
m1a-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
363.88 kB
Paraclu
peaks.bed.gz
5.10 kB
iCount RNA-maps
results.tar.gz
353.36 kB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-20180420-jufastqgz_unmapped_trimmed.fastq.gz
96.98 MB
report.txt
705 B
m1a-786o-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
508.45 kB
STAR
m1a-786o-20180420-jufastqgz_unmapped_trimmed.bam.bai
3.90 MB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
47.07 MB
m1a-786o-20180420-jufastqgz_unmapped_trimmed.bam
262.79 MB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
214.27 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed.bw
27.12 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.80 kB
iCount xlsites
m1a-786o-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
2.40 MB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
710.91 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
657.11 kB
m1a-786o-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
2.59 MB

Peaks (xlsites (Input_NoQ 4hrs_20180223_JU), 3, 0.05)

iCount peaks
demux_NNNNGTATTNNN_trimmed_single_peaks.bed.gz
134 B
demux_NNNNGTATTNNN_trimmed_single_scores.tsv.gz
307.41 kB
demux_NNNNGTATTNNN_trimmed_single_peaks.bedgraph
299 B

Peaks (xlsites (Input_NoQ plus DM-Akg 4hrs_20180223_JU), 3, 0.05)

iCount peaks
demux_NNNNTGCGTNNN_trimmed_single_peaks.bed.gz
154 B
demux_NNNNTGCGTNNN_trimmed_single_scores.tsv.gz
234.39 kB
demux_NNNNTGCGTNNN_trimmed_single_peaks.bedgraph
413 B

demux_nomatch.fastq.gz

Reads (single-end)
demux_nomatch.fastq.gz
899.99 MB
fastqc
Directory
stderr.txt
920 B
demux_nomatch_fastqc.zip
448.46 kB

Peaks (xlsites (Input_NoQ plus DM-Akg 15min_20180223_JU), 3, 0.05)

iCount peaks
demux_NNNNCATTTNNN_trimmed_single_peaks.bed.gz
69 B
demux_NNNNCATTTNNN_trimmed_single_scores.tsv.gz
152.71 kB
demux_NNNNCATTTNNN_trimmed_single_peaks.bedgraph
210 B

m1a-786o-ctrl-15min-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju.fastq.gz
151.63 MB
m1a-786o-ctrl-15min-20180413-ju_fastqc.zip
556.51 kB
stderr.txt
1.21 kB

Peaks (xlsites (Input_NoQ 15min_20180223_JU), 3, 0.05)

iCount peaks
demux_NNNNTTTAANNN_trimmed_single_peaks.bed.gz
69 B
demux_NNNNTTTAANNN_trimmed_single_scores.tsv.gz
221.81 kB
demux_NNNNTTTAANNN_trimmed_single_peaks.bedgraph
198 B

Peaks (xlsites (Input_Control 4hrs_20180223_JU), 3, 0.05)

iCount peaks
demux_NNNNACCTTNNN_trimmed_single_peaks.bed.gz
115 B
demux_NNNNACCTTNNN_trimmed_single_scores.tsv.gz
206.82 kB
demux_NNNNACCTTNNN_trimmed_single_peaks.bedgraph
235 B

Peaks (xlsites (Input_Control 15min_20180223_JU), 3, 0.05)

iCount peaks
demux_NNNNGAATANNN_trimmed_single_peaks.bed.gz
155 B
demux_NNNNGAATANNN_trimmed_single_scores.tsv.gz
306.33 kB
demux_NNNNGAATANNN_trimmed_single_peaks.bedgraph
338 B

GAM599A1-A30_S13_L002_R1_001.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.15 kB
GAM599A1-A30_S13_L002_R1_001.fastq.gz
16.45 GB
GAM599A1-A30_S13_L002_R1_001_fastqc.zip
557.55 kB

igg-786o-rabbit-igg-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
igg-786o-rabbit-igg-20180413-ju_fastqc.zip
539.33 kB
igg-786o-rabbit-igg-20180413-ju.fastq.gz
43.14 MB
stderr.txt
1.27 kB

igg-786o-mouse-igg-20180413-ju.fastq.gz

FASTQ file (single-end)
stderr.txt
1.19 kB
fastqc
Directory
igg-786o-mouse-igg-20180413-ju.fastq.gz
23.14 MB
igg-786o-mouse-igg-20180413-ju_fastqc.zip
508.66 kB

m6a-786o-ctrl-15min-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.21 kB
m6a-786o-ctrl-15min-20180413-ju.fastq.gz
357.85 MB
m6a-786o-ctrl-15min-20180413-ju_fastqc.zip
506.91 kB

m6a-786o-noq-15min-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-15min-20180413-ju.fastq.gz
375.26 MB
stderr.txt
1.19 kB
m6a-786o-noq-15min-20180413-ju_fastqc.zip
516.44 kB

m6a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz

FASTQ file (single-end)
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
511.72 kB
fastqc
Directory
stderr.txt
1.42 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
404.78 MB

m6a-786o-ctrl-4h-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.15 kB
m6a-786o-ctrl-4h-20180413-ju_fastqc.zip
504.73 kB
m6a-786o-ctrl-4h-20180413-ju.fastq.gz
244.61 MB

m6a-786o-noq-4h-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-4h-20180413-ju.fastq.gz
447.15 MB
m6a-786o-noq-4h-20180413-ju_fastqc.zip
509.88 kB
stderr.txt
1.13 kB

m6a-786o-noq-plusdm-akg-4h-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-plusdm-akg-4h-20180413-ju_fastqc.zip
511.68 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju.fastq.gz
418.30 MB
stderr.txt
1.34 kB

m1a-786o-noq-15min-20180413-ju.fastq.gz

FASTQ file (single-end)
m1a-786o-noq-15min-20180413-ju.fastq.gz
355.98 MB
fastqc
Directory
stderr.txt
1.19 kB
m1a-786o-noq-15min-20180413-ju_fastqc.zip
553.69 kB

m1a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
273.23 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
554.04 kB
stderr.txt
1.49 kB

m1a-786o-ctrl-4h-20180413-ju.fastq.gz

FASTQ file (single-end)
m1a-786o-ctrl-4h-20180413-ju.fastq.gz
374.22 MB
fastqc
Directory
stderr.txt
1.15 kB
m1a-786o-ctrl-4h-20180413-ju_fastqc.zip
558.69 kB

m1a-786o-noq-4h-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-4h-20180413-ju.fastq.gz
201.53 MB
m1a-786o-noq-4h-20180413-ju_fastqc.zip
558.38 kB
stderr.txt
1.13 kB

m1a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.36 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz
289.08 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_fastqc.zip
555.31 kB

m62a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz

iCount reads proxy
stderr.txt
1.85 kB
fastqc
Directory
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped.fastq.gz
125.97 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_fastqc.zip
503.59 kB
iCount summary
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
731.41 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
467 B
Paraclu
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
4.88 kB
Cutadapt (single-end)
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.fastq.gz
318.35 MB
report.txt
679 B
fastqc
Directory
STAR
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam
468.16 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_stats.txt
1.78 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
125.97 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
101.44 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bed.gz
73.01 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bedgraph
252 B
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_reads_single.bed.gz
85.73 kB
STAR
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped.bam.bai
3.05 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
47.93 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped.bam
390.14 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_SJ.out.tab
129.15 kB
iCount RNA-maps
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single.tar.gz
465.26 kB
iCount xlsites
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single.bed.gz
255.53 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.17 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
300.25 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_skipped.bam
2.92 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single.bedgraph
977.08 kB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
327.16 MB
stderr.txt
1.44 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
520.71 kB
K-mers
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-2_unmapped_single.tar.gz
2.42 MB

m62a-786o-ctrl-4h-20180413-ju.fastq.gz

FASTQ file (single-end)
m62a-786o-ctrl-4h-20180413-ju.fastq.gz
400.41 MB
fastqc
Directory
stderr.txt
1.17 kB
m62a-786o-ctrl-4h-20180413-ju_fastqc.zip
516.63 kB
iCount reads proxy
fastqc
Directory
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped.fastq.gz
155.53 MB
stderr.txt
1.58 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_fastqc.zip
499.49 kB
iCount RNA-maps
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single.tar.gz
474.12 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
m62a-786o-ctrl-4h-20180413-ju_trimmed.fastq.gz
384.66 MB
STAR
m62a-786o-ctrl-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
155.53 MB
m62a-786o-ctrl-4h-20180413-ju_trimmed.bam
580.75 MB
m62a-786o-ctrl-4h-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-ctrl-4h-20180413-ju_trimmed_stats.txt
1.78 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_SJ.out.tab
0 B
iCount summary
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
470 B
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
790.21 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.02 kB
STAR
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
62.63 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped.bam.bai
3.26 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_SJ.out.tab
144.97 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped.bam
483.93 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
Paraclu
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
5.59 kB
iCount xlsites
m62a-786o-ctrl-4h-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-ctrl-4h-20180413-ju_trimmed_single.bed.gz
78.42 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_reads_single.bed.gz
91.47 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_single.bedgraph
224 B
m62a-786o-ctrl-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
111.17 kB
iCount xlsites
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single.bed.gz
287.22 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
336.63 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_skipped.bam
4.44 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single.bedgraph
1.08 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.39 MB
K-mers
m62a-786o-ctrl-4h-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
1018 B

m62a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz

K-mers
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
1.04 kB
iCount summary
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
469 B
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
799.31 kB
iCount RNA-maps
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single.tar.gz
485.87 kB
Paraclu
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
5.64 kB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.fastq.gz
366.71 MB
report.txt
677 B
iCount reads proxy
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped.fastq.gz
153.07 MB
fastqc
Directory
stderr.txt
1.79 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_fastqc.zip
504.01 kB
STAR
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam
548.90 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
153.07 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam.bai
336 B
iCount xlsites
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bed.gz
75.80 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
105.42 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_reads_single.bed.gz
88.54 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bedgraph
246 B
STAR
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped.bam.bai
3.19 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped.bam
476.20 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
59.25 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_SJ.out.tab
140.84 kB
iCount xlsites
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_skipped.bam
3.17 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single.bedgraph
1.10 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_single.bed.gz
292.87 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
344.99 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.32 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.38 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz
379.34 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_fastqc.zip
516.19 kB

m1a-786o-noq-3min-20180413-ju.fastq.gz

FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-3min-20180413-ju.fastq.gz
103.90 MB
m1a-786o-noq-3min-20180413-ju_fastqc.zip
557.07 kB
stderr.txt
1.17 kB

m1a-786o-noq-plus-dm-akg-3min-20180413-ju.fastq.gz

FASTQ file (single-end)
stderr.txt
1.40 kB
fastqc
Directory
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_fastqc.zip
557.47 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju.fastq.gz
87.05 MB

m1a-786o-noq-15min-20180413-ju-2.fastq.gz

FASTQ file (single-end)
m1a-786o-noq-15min-20180413-ju-2.fastq.gz
52.08 MB
fastqc
Directory
stderr.txt
1.23 kB
m1a-786o-noq-15min-20180413-ju-2_fastqc.zip
562.53 kB

m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2.fastq.gz

FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2.fastq.gz
75.22 MB
fastqc
Directory
stderr.txt
1.46 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_fastqc.zip
550.60 kB

m1a-786o-ctrl-4h-20180413-ju-2.fastq.gz

FASTQ file (single-end)
m1a-786o-ctrl-4h-20180413-ju-2.fastq.gz
67.29 MB
fastqc
Directory
stderr.txt
1.19 kB
m1a-786o-ctrl-4h-20180413-ju-2_fastqc.zip
551.75 kB

m1a-786o-noq-4h-20180413-ju-2.fastq.gz

FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-4h-20180413-ju-2.fastq.gz
80.67 MB
stderr.txt
1.17 kB
m1a-786o-noq-4h-20180413-ju-2_fastqc.zip
544.64 kB

m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2.fastq.gz

FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2.fastq.gz
66.45 MB
fastqc
Directory
stderr.txt
1.40 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_fastqc.zip
541.71 kB

igg-786o-mouse-igg-20180413-ju-2.fastq.gz

FASTQ file (single-end)
fastqc
Directory
igg-786o-mouse-igg-20180413-ju-2.fastq.gz
325.62 MB
stderr.txt
1.23 kB
igg-786o-mouse-igg-20180413-ju-2_fastqc.zip
503.56 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
1.28 GB
stderr.txt
875 B
demux_nomatch_fastqc.zip
465.19 kB

Input_NoQ plus DM-Akg 15min_20180223_JU

iCount summary
demux_NNNNCATTTNNN_mapped_to_genome_single_summary_type.tsv
600 B
demux_NNNNCATTTNNN_mapped_to_genome_single_summary_subtype.tsv
981 B
demux_NNNNCATTTNNN_mapped_to_genome_single_summary_gene.tsv
1.04 MB
iCount RNA-maps
demux_NNNNCATTTNNN_mapped_to_genome_single.tar.gz
460.79 kB
Paraclu
demux_NNNNCATTTNNN_mapped_to_genome_single_peaks.bed.gz
3.83 kB
PEKA
4mer analysis of demux_NNNNCATTTNNN_mapped_to_genome.tar.gz
172.07 kB
Cutadapt (single-end)
report.txt
655 B
demux_NNNNCATTTNNN_trimmed.fastq.gz
23.95 MB
fastqc
Directory
STAR
demux_NNNNCATTTNNN_trimmed_unmapped.out.mate1.fastq.gz
8.79 MB
demux_NNNNCATTTNNN_trimmed.bam.bai
3.10 MB
demux_NNNNCATTTNNN_trimmed.bam
119.02 MB
demux_NNNNCATTTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCATTTNNN_trimmed_SJ.out.tab
78.39 kB
iCount xlsites
demux_NNNNCATTTNNN_mapped_to_genome_skipped.bam
3.06 kB
demux_NNNNCATTTNNN_mapped_to_genome_single.bed.gz
225.90 kB
demux_NNNNCATTTNNN_mapped_to_genome_singleAndMulti.bed.gz
1.56 MB
demux_NNNNCATTTNNN_mapped_to_genome_reads_single.bed.gz
240.84 kB
demux_NNNNCATTTNNN_mapped_to_genome_single.bedgraph
848.35 kB

Input_Control 15min_20180223_JU

iCount summary
demux_NNNNGAATANNN_mapped_to_genome_single_summary_type.tsv
603 B
demux_NNNNGAATANNN_mapped_to_genome_single_summary_subtype.tsv
986 B
demux_NNNNGAATANNN_mapped_to_genome_single_summary_gene.tsv
1.47 MB
iCount RNA-maps
demux_NNNNGAATANNN_mapped_to_genome_single.tar.gz
541.27 kB
PEKA
4mer analysis of demux_NNNNGAATANNN_mapped_to_genome.tar.gz
322.09 kB
Cutadapt (single-end)
report.txt
655 B
demux_NNNNGAATANNN_trimmed.fastq.gz
54.26 MB
fastqc
Directory
STAR
demux_NNNNGAATANNN_trimmed_unmapped.out.mate1.fastq.gz
19.95 MB
demux_NNNNGAATANNN_trimmed.bam.bai
3.91 MB
demux_NNNNGAATANNN_trimmed.bam
275.67 MB
demux_NNNNGAATANNN_trimmed_stats.txt
1.80 kB
demux_NNNNGAATANNN_trimmed_SJ.out.tab
159.46 kB
iCount xlsites
demux_NNNNGAATANNN_mapped_to_genome_skipped.bam
3.37 kB
demux_NNNNGAATANNN_mapped_to_genome_single.bed.gz
455.76 kB
demux_NNNNGAATANNN_mapped_to_genome_singleAndMulti.bed.gz
2.68 MB
demux_NNNNGAATANNN_mapped_to_genome_reads_single.bed.gz
487.52 kB
demux_NNNNGAATANNN_mapped_to_genome_single.bedgraph
1.73 MB
Paraclu
demux_NNNNGAATANNN_mapped_to_genome_single_peaks.bed.gz
7.67 kB

Input_NoQ 4hrs_20180223_JU

Paraclu
demux_NNNNGTATTNNN_mapped_to_genome_single_peaks.bed.gz
7.57 kB
iCount RNA-maps
demux_NNNNGTATTNNN_mapped_to_genome_single.tar.gz
521.86 kB
PEKA
4mer analysis of demux_NNNNGTATTNNN_mapped_to_genome.tar.gz
323.08 kB
Cutadapt (single-end)
report.txt
655 B
demux_NNNNGTATTNNN_trimmed.fastq.gz
57.71 MB
fastqc
Directory
STAR
demux_NNNNGTATTNNN_trimmed_unmapped.out.mate1.fastq.gz
28.78 MB
demux_NNNNGTATTNNN_trimmed.bam.bai
3.99 MB
demux_NNNNGTATTNNN_trimmed.bam
238.14 MB
demux_NNNNGTATTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTATTNNN_trimmed_SJ.out.tab
161.49 kB
iCount xlsites
demux_NNNNGTATTNNN_mapped_to_genome_skipped.bam
3.53 kB
demux_NNNNGTATTNNN_mapped_to_genome_single.bed.gz
457.68 kB
demux_NNNNGTATTNNN_mapped_to_genome_singleAndMulti.bed.gz
2.79 MB
demux_NNNNGTATTNNN_mapped_to_genome_reads_single.bed.gz
486.61 kB
demux_NNNNGTATTNNN_mapped_to_genome_single.bedgraph
1.73 MB
iCount summary
demux_NNNNGTATTNNN_mapped_to_genome_single_summary_type.tsv
605 B
demux_NNNNGTATTNNN_mapped_to_genome_single_summary_subtype.tsv
993 B
demux_NNNNGTATTNNN_mapped_to_genome_single_summary_gene.tsv
1.49 MB

Input_NoQ plus DM-Akg 4hrs_20180223_JU

iCount summary
demux_NNNNTGCGTNNN_mapped_to_genome_single_summary_type.tsv
608 B
demux_NNNNTGCGTNNN_mapped_to_genome_single_summary_subtype.tsv
989 B
demux_NNNNTGCGTNNN_mapped_to_genome_single_summary_gene.tsv
1.29 MB
iCount RNA-maps
demux_NNNNTGCGTNNN_mapped_to_genome_single.tar.gz
500.34 kB
Paraclu
demux_NNNNTGCGTNNN_mapped_to_genome_single_peaks.bed.gz
5.74 kB
PEKA
4mer analysis of demux_NNNNTGCGTNNN_mapped_to_genome.tar.gz
300.29 kB
Cutadapt (single-end)
report.txt
655 B
demux_NNNNTGCGTNNN_trimmed.fastq.gz
36.73 MB
fastqc
Directory
STAR
demux_NNNNTGCGTNNN_trimmed_unmapped.out.mate1.fastq.gz
14.63 MB
demux_NNNNTGCGTNNN_trimmed.bam.bai
3.62 MB
demux_NNNNTGCGTNNN_trimmed.bam
176.15 MB
demux_NNNNTGCGTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTGCGTNNN_trimmed_SJ.out.tab
127.42 kB
iCount xlsites
demux_NNNNTGCGTNNN_mapped_to_genome_skipped.bam
3.06 kB
demux_NNNNTGCGTNNN_mapped_to_genome_single.bed.gz
343.01 kB
demux_NNNNTGCGTNNN_mapped_to_genome_singleAndMulti.bed.gz
2.19 MB
demux_NNNNTGCGTNNN_mapped_to_genome_reads_single.bed.gz
365.39 kB
demux_NNNNTGCGTNNN_mapped_to_genome_single.bedgraph
1.29 MB

Input_Control 4hrs_20180223_JU

PEKA
4mer analysis of demux_NNNNACCTTNNN_trimmed_mapped_to_genome.tar.gz
305.50 kB
Cutadapt (single-end)
report.txt
663 B
demux_NNNNACCTTNNN_trimmed_trimmed.fastq.gz
35.84 MB
fastqc
Directory
STAR
demux_NNNNACCTTNNN_trimmed_trimmed_unmapped.out.mate1.fastq.gz
15.19 MB
demux_NNNNACCTTNNN_trimmed_trimmed.bam.bai
3.53 MB
demux_NNNNACCTTNNN_trimmed_trimmed.bam
163.52 MB
demux_NNNNACCTTNNN_trimmed_trimmed_stats.txt
1.80 kB
demux_NNNNACCTTNNN_trimmed_trimmed_SJ.out.tab
112.33 kB
iCount xlsites
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_skipped.bam
3.06 kB
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single.bed.gz
305.10 kB
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_singleAndMulti.bed.gz
2.05 MB
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_reads_single.bed.gz
325.25 kB
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single.bedgraph
1.13 MB
iCount summary
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single_summary_type.tsv
602 B
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single_summary_subtype.tsv
987 B
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single_summary_gene.tsv
1.24 MB
Paraclu
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single_peaks.bed.gz
5.42 kB
iCount RNA-maps
demux_NNNNACCTTNNN_trimmed_mapped_to_genome_single.tar.gz
479.02 kB

Input_NoQ 15min_20180223_JU

iCount RNA-maps
demux_NNNNTTTAANNN_mapped_to_genome_single.tar.gz
496.42 kB
Cutadapt (single-end)
report.txt
655 B
demux_NNNNTTTAANNN_trimmed.fastq.gz
35.59 MB
fastqc
Directory
STAR
demux_NNNNTTTAANNN_trimmed_unmapped.out.mate1.fastq.gz
12.78 MB
demux_NNNNTTTAANNN_trimmed.bam.bai
3.64 MB
demux_NNNNTTTAANNN_trimmed.bam
175.48 MB
demux_NNNNTTTAANNN_trimmed_stats.txt
1.80 kB
demux_NNNNTTTAANNN_trimmed_SJ.out.tab
118.83 kB
iCount xlsites
demux_NNNNTTTAANNN_mapped_to_genome_skipped.bam
3.29 kB
demux_NNNNTTTAANNN_mapped_to_genome_single.bed.gz
338.11 kB
demux_NNNNTTTAANNN_mapped_to_genome_singleAndMulti.bed.gz
2.17 MB
demux_NNNNTTTAANNN_mapped_to_genome_reads_single.bed.gz
360.37 kB
demux_NNNNTTTAANNN_mapped_to_genome_single.bedgraph
1.26 MB
iCount summary
demux_NNNNTTTAANNN_mapped_to_genome_single_summary_type.tsv
602 B
demux_NNNNTTTAANNN_mapped_to_genome_single_summary_subtype.tsv
986 B
demux_NNNNTTTAANNN_mapped_to_genome_single_summary_gene.tsv
1.29 MB
Paraclu
demux_NNNNTTTAANNN_mapped_to_genome_single_peaks.bed.gz
5.68 kB
PEKA
4mer analysis of demux_NNNNTTTAANNN_mapped_to_genome.tar.gz
296.84 kB

m1A_786O_NoQ 15min_20180413_JU_2

STAR
demux_NNNNTGTGGNNN.bam.bai
1.81 MB
demux_NNNNTGTGGNNN.bam
203.19 MB
demux_NNNNTGTGGNNN_unmapped.out.mate1.fastq.gz
22.12 MB
demux_NNNNTGTGGNNN_stats.txt
1.81 kB
demux_NNNNTGTGGNNN_SJ.out.tab
15.77 kB
iCount summary
demux_NNNNTGTGGNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNTGTGGNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNTGTGGNNN_unique_summary.tsv_summary_gene.tsv
94.38 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGTGGNNN.fastq.gz
51.97 MB
stderr.txt
975 B
demux_NNNNTGTGGNNN_fastqc.zip
435.67 kB
iCount peaks
demux_NNNNTGTGGNNN_unique_peaks.bedgraph
25.43 kB
demux_NNNNTGTGGNNN_unique_scores.tsv.gz
61.27 kB
demux_NNNNTGTGGNNN_unique_peaks.bed.gz
13.11 kB
iCount xlsites
demux_NNNNTGTGGNNN_multi.bed.gz
421.71 kB
demux_NNNNTGTGGNNN_skipped.bam
832.05 kB
demux_NNNNTGTGGNNN_unique.bedgraph
176.69 kB
demux_NNNNTGTGGNNN_unique.bed.gz
49.15 kB

m6A_786O_wt_VHL__20180420_JU

Reads (single-end)
fastqc
Directory
demux_NNNNAGTTANNN.fastq.gz
304.22 MB
stderr.txt
975 B
demux_NNNNAGTTANNN_fastqc.zip
457.05 kB
iCount xlsites
demux_NNNNAGTTANNN_skipped.bam
6.42 MB
demux_NNNNAGTTANNN_unique.bed.gz
1.97 MB
demux_NNNNAGTTANNN_multi.bed.gz
5.69 MB
demux_NNNNAGTTANNN_unique.bedgraph
8.92 MB
STAR
demux_NNNNAGTTANNN_unmapped.out.mate1.fastq.gz
78.91 MB
demux_NNNNAGTTANNN.bam
2.20 GB
demux_NNNNAGTTANNN.bam.bai
4.81 MB
demux_NNNNAGTTANNN_stats.txt
1.81 kB
demux_NNNNAGTTANNN_SJ.out.tab
766.00 kB
iCount summary
demux_NNNNAGTTANNN_unique_summary.tsv_summary_type.tsv
270 B
demux_NNNNAGTTANNN_unique_summary.tsv_summary_gene.tsv
1.04 MB
demux_NNNNAGTTANNN_unique_summary.tsv_summary_subtype.tsv
651 B

m6A_786O_NoQ 4H_20180413_JU

iCount summary
demux_NNNNGGAGCNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNGGAGCNNN_unique_summary.tsv_summary_gene.tsv
834.18 kB
demux_NNNNGGAGCNNN_unique_summary.tsv_summary_subtype.tsv
636 B
Reads (single-end)
fastqc
Directory
demux_NNNNGGAGCNNN.fastq.gz
432.36 MB
demux_NNNNGGAGCNNN_fastqc.zip
465.59 kB
stderr.txt
975 B
iCount peaks
demux_NNNNGGAGCNNN_unique_peaks.bed.gz
108.35 kB
demux_NNNNGGAGCNNN_unique_scores.tsv.gz
893.86 kB
demux_NNNNGGAGCNNN_unique_peaks.bedgraph
274.46 kB
iCount xlsites
demux_NNNNGGAGCNNN_unique.bed.gz
852.80 kB
demux_NNNNGGAGCNNN_skipped.bam
8.74 MB
demux_NNNNGGAGCNNN_unique.bedgraph
3.57 MB
demux_NNNNGGAGCNNN_multi.bed.gz
2.83 MB
STAR
demux_NNNNGGAGCNNN.bam.bai
4.53 MB
demux_NNNNGGAGCNNN_unmapped.out.mate1.fastq.gz
113.02 MB
demux_NNNNGGAGCNNN_stats.txt
1.82 kB
demux_NNNNGGAGCNNN.bam
2.77 GB
demux_NNNNGGAGCNNN_SJ.out.tab
359.62 kB

IgG_786O_Rabbit IgG_20180413_JU

iCount summary
demux_NNNNTCCACNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_subtype.tsv
626 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_gene.tsv
284.53 kB
iCount xlsites
demux_NNNNTCCACNNN_skipped.bam
1.21 MB
demux_NNNNTCCACNNN_unique.bed.gz
104.22 kB
demux_NNNNTCCACNNN_unique.bedgraph
384.41 kB
demux_NNNNTCCACNNN_multi.bed.gz
787.21 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCCACNNN.fastq.gz
48.56 MB
stderr.txt
975 B
demux_NNNNTCCACNNN_fastqc.zip
451.94 kB
STAR
demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz
15.99 MB
demux_NNNNTCCACNNN.bam.bai
2.14 MB
demux_NNNNTCCACNNN_SJ.out.tab
51.41 kB
demux_NNNNTCCACNNN_stats.txt
1.80 kB
demux_NNNNTCCACNNN.bam
259.24 MB
iCount peaks
demux_NNNNTCCACNNN_unique_peaks.bed.gz
11.95 kB
demux_NNNNTCCACNNN_unique_scores.tsv.gz
143.46 kB
demux_NNNNTCCACNNN_unique_peaks.bedgraph
23.39 kB

m62A_786O_NoQ 4H_20180413_JU

STAR
demux_NNNNTGAAANNN_unmapped.out.mate1.fastq.gz
102.62 MB
demux_NNNNTGAAANNN_stats.txt
1.81 kB
demux_NNNNTGAAANNN.bam.bai
3.49 MB
demux_NNNNTGAAANNN.bam
1.67 GB
demux_NNNNTGAAANNN_SJ.out.tab
137.32 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGAAANNN.fastq.gz
300.95 MB
stderr.txt
975 B
demux_NNNNTGAAANNN_fastqc.zip
487.09 kB
iCount peaks
demux_NNNNTGAAANNN_unique_peaks.bed.gz
48.78 kB
demux_NNNNTGAAANNN_unique_peaks.bedgraph
102.22 kB
demux_NNNNTGAAANNN_unique_scores.tsv.gz
344.23 kB
iCount summary
demux_NNNNTGAAANNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNTGAAANNN_unique_summary.tsv_summary_subtype.tsv
639 B
demux_NNNNTGAAANNN_unique_summary.tsv_summary_gene.tsv
522.94 kB
iCount xlsites
demux_NNNNTGAAANNN_skipped.bam
7.24 MB
demux_NNNNTGAAANNN_unique.bedgraph
1.04 MB
demux_NNNNTGAAANNN_multi.bed.gz
1.57 MB
demux_NNNNTGAAANNN_unique.bed.gz
277.83 kB

m62A_786O_NoQ plus DM-Akg 4H_20180413_JU

iCount peaks
demux_NNNNAGGCANNN_unique_scores.tsv.gz
381.72 kB
demux_NNNNAGGCANNN_unique_peaks.bed.gz
52.55 kB
demux_NNNNAGGCANNN_unique_peaks.bedgraph
110.33 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAGGCANNN.fastq.gz
362.58 MB
stderr.txt
975 B
demux_NNNNAGGCANNN_fastqc.zip
476.40 kB
STAR
demux_NNNNAGGCANNN.bam
2.07 GB
demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz
121.51 MB
demux_NNNNAGGCANNN.bam.bai
3.66 MB
demux_NNNNAGGCANNN_stats.txt
1.81 kB
demux_NNNNAGGCANNN_SJ.out.tab
153.76 kB
iCount summary
demux_NNNNAGGCANNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_gene.tsv
570.64 kB
demux_NNNNAGGCANNN_unique_summary.tsv_summary_type.tsv
267 B
iCount xlsites
demux_NNNNAGGCANNN_skipped.bam
9.02 MB
demux_NNNNAGGCANNN_multi.bed.gz
1.62 MB
demux_NNNNAGGCANNN_unique.bed.gz
308.83 kB
demux_NNNNAGGCANNN_unique.bedgraph
1.17 MB

m1A_786O_Ctrl 15min_20180413_JU

STAR
demux_NNNNTCGCCNNN.bam.bai
2.59 MB
demux_NNNNTCGCCNNN_SJ.out.tab
93.91 kB
demux_NNNNTCGCCNNN.bam
641.02 MB
demux_NNNNTCGCCNNN_stats.txt
1.81 kB
demux_NNNNTCGCCNNN_unmapped.out.mate1.fastq.gz
63.86 MB
Reads (single-end)
demux_NNNNTCGCCNNN.fastq.gz
148.37 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCGCCNNN_fastqc.zip
480.96 kB
iCount peaks
demux_NNNNTCGCCNNN_unique_peaks.bed.gz
42.29 kB
demux_NNNNTCGCCNNN_unique_peaks.bedgraph
93.73 kB
demux_NNNNTCGCCNNN_unique_scores.tsv.gz
235.44 kB
iCount xlsites
demux_NNNNTCGCCNNN_skipped.bam
2.89 MB
demux_NNNNTCGCCNNN_multi.bed.gz
1.15 MB
demux_NNNNTCGCCNNN_unique.bed.gz
192.47 kB
demux_NNNNTCGCCNNN_unique.bedgraph
729.40 kB
iCount summary
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_subtype.tsv
645 B
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_gene.tsv
353.59 kB
demux_NNNNTCGCCNNN_unique_summary.tsv_summary_type.tsv
267 B

m1A_786O_Ctrl 4H_20180413_JU_2

Reads (single-end)
demux_NNNNGATCGNNN.fastq.gz
67.96 MB
fastqc
Directory
demux_NNNNGATCGNNN_fastqc.zip
444.88 kB
stderr.txt
975 B
iCount summary
demux_NNNNGATCGNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGATCGNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNGATCGNNN_unique_summary.tsv_summary_gene.tsv
104.57 kB
STAR
demux_NNNNGATCGNNN.bam.bai
1.86 MB
demux_NNNNGATCGNNN.bam
255.96 MB
demux_NNNNGATCGNNN_unmapped.out.mate1.fastq.gz
32.29 MB
demux_NNNNGATCGNNN_stats.txt
1.81 kB
demux_NNNNGATCGNNN_SJ.out.tab
19.56 kB
iCount peaks
demux_NNNNGATCGNNN_unique_scores.tsv.gz
66.93 kB
demux_NNNNGATCGNNN_unique_peaks.bedgraph
28.44 kB
demux_NNNNGATCGNNN_unique_peaks.bed.gz
14.06 kB
iCount xlsites
demux_NNNNGATCGNNN_multi.bed.gz
458.88 kB
demux_NNNNGATCGNNN_unique.bed.gz
54.29 kB
demux_NNNNGATCGNNN_skipped.bam
1.47 MB
demux_NNNNGATCGNNN_unique.bedgraph
197.37 kB

m1a-786o-ctrl-3min-20180413-ju.fastq.gz

FASTQ file (single-end)
m1a-786o-ctrl-3min-20180413-ju.fastq.gz
82.87 MB
fastqc
Directory
stderr.txt
1.19 kB
m1a-786o-ctrl-3min-20180413-ju_fastqc.zip
560.99 kB

m1a-786o-ctrl-15min-20180413-ju-2.fastq.gz

FASTQ file (single-end)
m1a-786o-ctrl-15min-20180413-ju-2.fastq.gz
47.62 MB
fastqc
Directory
stderr.txt
1.25 kB
m1a-786o-ctrl-15min-20180413-ju-2_fastqc.zip
556.85 kB

Input_Control 4hrs_20180223_JU

Reads (single-end)
demux_NNNNACCTTNNN.fastq.gz
44.16 MB
fastqc
Directory
demux_NNNNACCTTNNN_fastqc.zip
482.14 kB
stderr.txt
975 B
iCount xlsites
demux_NNNNACCTTNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNACCTTNNN_trimmed_singleAndMulti.bed.gz
1.90 MB
demux_NNNNACCTTNNN_trimmed_single.bed.gz
284.31 kB
demux_NNNNACCTTNNN_trimmed_single.bedgraph
1.05 MB
STAR
demux_NNNNACCTTNNN_trimmed_unmapped.out.mate1.fastq.gz
16.07 MB
demux_NNNNACCTTNNN_trimmed.bam
201.04 MB
demux_NNNNACCTTNNN_trimmed.bam.bai
3.40 MB
demux_NNNNACCTTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNACCTTNNN_trimmed_SJ.out.tab
105.30 kB
Cutadapt (single-end)
report.txt
669 B
fastqc
Directory
demux_NNNNACCTTNNN_trimmed.fastq.gz
35.80 MB
demux_NNNNACCTTNNN_trimmed_fastqc.zip
464.51 kB
iCount summary
demux_NNNNACCTTNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNACCTTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNACCTTNNN_trimmed_single_summary.tsv_summary_gene.tsv
543.58 kB

Input_Control-for-NoMet 15min_20180223_JU

Cutadapt (single-end)
fastqc
Directory
demux_NNNNATCTGATTNNNNN_trimmed.fastq.gz
36.34 MB
demux_NNNNATCTGATTNNNNN_trimmed_fastqc.zip
396.33 kB
report.txt
675 B
iCount xlsites
demux_NNNNATCTGATTNNNNN_trimmed_single.bed.gz
224.79 kB
demux_NNNNATCTGATTNNNNN_trimmed_singleAndMulti.bed.gz
1.63 MB
demux_NNNNATCTGATTNNNNN_trimmed_single.bedgraph
830.24 kB
demux_NNNNATCTGATTNNNNN_trimmed_skipped.bam
3.19 kB
iCount summary
demux_NNNNATCTGATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
demux_NNNNATCTGATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNATCTGATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
442.58 kB
STAR
demux_NNNNATCTGATTNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNATCTGATTNNNNN_trimmed.bam.bai
3.12 MB
demux_NNNNATCTGATTNNNNN_trimmed.bam
209.33 MB
demux_NNNNATCTGATTNNNNN_trimmed_SJ.out.tab
82.51 kB
demux_NNNNATCTGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
12.36 MB
Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNATCTGATTNNNNN.fastq.gz
42.16 MB
demux_NNNNATCTGATTNNNNN_fastqc.zip
414.44 kB

IgG_786O_Mouse IgG_20180413_JU

Cutadapt (single-end)
fastqc
Directory
igg-786o-mouse-igg-20180413-ju_trimmed.fastq.gz
22.57 MB
report.txt
665 B
STAR
igg-786o-mouse-igg-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
5.39 MB
igg-786o-mouse-igg-20180413-ju_trimmed.bam.bai
20.56 kB
igg-786o-mouse-igg-20180413-ju_trimmed.bam
27.78 MB
igg-786o-mouse-igg-20180413-ju_trimmed_stats.txt
1.78 kB
igg-786o-mouse-igg-20180413-ju_trimmed_SJ.out.tab
0 B
igg-786o-mouse-igg-20180413-ju_trimmed.bw
106.44 kB
iCount xlsites
igg-786o-mouse-igg-20180413-ju_trimmed_single.bed.gz
58.25 kB
igg-786o-mouse-igg-20180413-ju_trimmed_skipped.bam
3.93 kB
igg-786o-mouse-igg-20180413-ju_trimmed_singleAndMulti.bed.gz
98.77 kB
igg-786o-mouse-igg-20180413-ju_trimmed_single.bedgraph
208 B
igg-786o-mouse-igg-20180413-ju_trimmed_reads_single.bed.gz
63.18 kB
FASTQ file (single-end)
fastqc
Directory
igg-786o-mouse-igg-20180413-ju.fastq.gz
23.14 MB
stderr.txt
1.25 kB
igg-786o-mouse-igg-20180413-ju_fastqc.zip
508.68 kB
STAR
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
2.06 MB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.bam.bai
2.01 MB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.bam
10.27 MB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.bw
21.02 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_SJ.out.tab
59.40 kB
iCount reads proxy
fastqc
Directory
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.fastq.gz
5.39 MB
stderr.txt
1.60 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_fastqc.zip
502.12 kB
iCount xlsites
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_skipped.bam
3.21 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single.bed.gz
111.32 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
407.98 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single.bedgraph
416.17 kB
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
125.36 kB
iCount summary
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1014 B
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
462 B
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
454.75 kB
Paraclu
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
914 B
iCount RNA-maps
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped_single.tar.gz
435.50 kB
K-mers
igg-786o-mouse-igg-20180413-jufastqgz-3_unmapped.tar.gz
150 B

Input_NoQ 15min_20180223_JU

Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNTTTAANNN_trimmed.fastq.gz
34.50 MB
demux_NNNNTTTAANNN_trimmed_fastqc.zip
469.45 kB
iCount summary
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_gene.tsv
572.57 kB
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
iCount xlsites
demux_NNNNTTTAANNN_trimmed_skipped.bam
3.30 kB
demux_NNNNTTTAANNN_trimmed_singleAndMulti.bed.gz
1.95 MB
demux_NNNNTTTAANNN_trimmed_single.bed.gz
304.68 kB
demux_NNNNTTTAANNN_trimmed_single.bedgraph
1.13 MB
STAR
demux_NNNNTTTAANNN_trimmed.bam
212.85 MB
demux_NNNNTTTAANNN_trimmed_unmapped.out.mate1.fastq.gz
13.37 MB
demux_NNNNTTTAANNN_trimmed.bam.bai
3.45 MB
demux_NNNNTTTAANNN_trimmed_SJ.out.tab
109.55 kB
demux_NNNNTTTAANNN_trimmed_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTTTAANNN.fastq.gz
38.94 MB
demux_NNNNTTTAANNN_fastqc.zip
487.16 kB

Input_Control_2_15min_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGATTNNNNN.fastq.gz
37.66 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGATTNNNNN_fastqc.zip
403.00 kB
iCount summary
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
411.43 kB
iCount xlsites
demux_NNNNGCTTGATTNNNNN_trimmed_skipped.bam
3.70 kB
demux_NNNNGCTTGATTNNNNN_trimmed_single.bed.gz
183.87 kB
demux_NNNNGCTTGATTNNNNN_trimmed_single.bedgraph
671.89 kB
demux_NNNNGCTTGATTNNNNN_trimmed_singleAndMulti.bed.gz
1.42 MB
STAR
demux_NNNNGCTTGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
11.06 MB
demux_NNNNGCTTGATTNNNNN_trimmed.bam
177.05 MB
demux_NNNNGCTTGATTNNNNN_trimmed_SJ.out.tab
67.64 kB
demux_NNNNGCTTGATTNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGATTNNNNN_trimmed.bam.bai
2.93 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
674 B
demux_NNNNGCTTGATTNNNNN_trimmed.fastq.gz
31.29 MB
demux_NNNNGCTTGATTNNNNN_trimmed_fastqc.zip
400.51 kB

m6A_786O__20180420_JU

Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGTAACNNN_fastqc.zip
425.29 kB
demux_NNNNGTAACNNN.fastq.gz
32.10 MB
iCount summary
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_type.tsv
259 B
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_gene.tsv
264.02 kB
demux_NNNNGTAACNNN_trimmed_single_summary.tsv_summary_subtype.tsv
626 B
iCount xlsites
demux_NNNNGTAACNNN_trimmed_single.bedgraph
295.55 kB
demux_NNNNGTAACNNN_trimmed_singleAndMulti.bed.gz
601.53 kB
demux_NNNNGTAACNNN_trimmed_skipped.bam
3.07 kB
demux_NNNNGTAACNNN_trimmed_single.bed.gz
80.06 kB
STAR
demux_NNNNGTAACNNN_trimmed.bam.bai
2.11 MB
demux_NNNNGTAACNNN_trimmed.bam
62.41 MB
demux_NNNNGTAACNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTAACNNN_trimmed_unmapped.out.mate1.fastq.gz
7.13 MB
demux_NNNNGTAACNNN_trimmed_SJ.out.tab
62.97 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
demux_NNNNGTAACNNN_trimmed.fastq.gz
14.96 MB
demux_NNNNGTAACNNN_trimmed_fastqc.zip
472.10 kB

nomatch.fastq.gz

FASTQ file (single-end)
stderr.txt
755 B
fastqc
Directory
nomatch_fastqc.zip
608.70 kB
nomatch.fastq.gz
3.90 GB

m6A_786O_NoQ plus DM-Akg 15min_20180413_JU

iCount summary
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
474 B
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
897.97 kB
Paraclu
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.33 kB
iCount RNA-maps
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
569.89 kB
STAR
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
114.17 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam
449.75 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam.bai
20.56 kB
iCount xlsites
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_reads_single.bed.gz
82.11 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bed.gz
69.80 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
144.17 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bedgraph
232 B
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
404.78 MB
stderr.txt
1.48 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
511.74 kB
STAR
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.24 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
164.84 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam
152.53 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bw
26.11 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
43.00 MB
iCount xlsites
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.44 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.33 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_skipped.bam
3.40 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
450.05 kB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
369.53 kB
iCount reads proxy
fastqc
Directory
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.fastq.gz
114.17 MB
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
469.82 kB
stderr.txt
1.83 kB
K-mers
m6a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.tar.gz
305.61 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.fastq.gz
386.32 MB
report.txt
678 B

m6A_786O_Ctrl 4H_20180413_JU

iCount reads proxy
fastqc
Directory
stderr.txt
1.56 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.fastq.gz
67.78 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
501.95 kB
STAR
m6a-786o-ctrl-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
67.78 MB
m6a-786o-ctrl-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-4h-20180413-ju_trimmed.bam
275.92 MB
iCount xlsites
m6a-786o-ctrl-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
129.87 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_single.bed.gz
67.21 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_reads_single.bed.gz
77.28 kB
m6a-786o-ctrl-4h-20180413-ju_trimmed_single.bedgraph
204 B
m6a-786o-ctrl-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-ctrl-4h-20180413-ju.fastq.gz
244.61 MB
m6a-786o-ctrl-4h-20180413-ju_fastqc.zip
504.74 kB
stderr.txt
1.21 kB
STAR
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.98 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam
92.77 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
22.93 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
181.49 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bw
25.29 kB
iCount xlsites
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
507.33 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.25 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
1.68 MB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
417.39 kB
iCount summary
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
469 B
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
928.90 kB
Paraclu
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.51 kB
iCount RNA-maps
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
589.19 kB
K-mers
m6a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.tar.gz
289.38 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
664 B
m6a-786o-ctrl-4h-20180413-ju_trimmed.fastq.gz
238.65 MB

m6A_786O_Ctrl 15min_20180413_JU

STAR
m6a-786o-ctrl-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed.bam
393.41 MB
m6a-786o-ctrl-15min-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
101.35 MB
FASTQ file (single-end)
stderr.txt
1.26 kB
fastqc
Directory
m6a-786o-ctrl-15min-20180413-ju.fastq.gz
357.85 MB
m6a-786o-ctrl-15min-20180413-ju_fastqc.zip
506.92 kB
STAR
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.13 MB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam
136.11 MB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
38.40 MB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
152.09 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bw
25.16 kB
iCount reads proxy
fastqc
Directory
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
481.26 kB
stderr.txt
1.62 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.fastq.gz
101.35 MB
iCount xlsites
m6a-786o-ctrl-15min-20180413-ju_trimmed_reads_single.bed.gz
80.53 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed_single.bedgraph
210 B
m6a-786o-ctrl-15min-20180413-ju_trimmed_single.bed.gz
68.44 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-ctrl-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
141.02 kB
iCount xlsites
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.21 MB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
331.21 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
403.89 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.29 MB
iCount summary
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
860.86 kB
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
469 B
Paraclu
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.83 kB
iCount RNA-maps
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
543.30 kB
K-mers
m6a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.tar.gz
290.51 kB
Cutadapt (single-end)
m6a-786o-ctrl-15min-20180413-ju_trimmed.fastq.gz
339.97 MB
fastqc
Directory
report.txt
668 B

m1A_786O_NoQ plus DM-Akg 15min_20180413_JU

iCount peaks
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
103 B
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
188.94 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
219 B
STAR
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
67.81 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam
562.25 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
162.84 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bed.gz
87.08 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_reads_single.bed.gz
94.06 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bedgraph
232 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
STAR
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam.bai
2.76 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam
124.29 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
32.61 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
129.78 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bw
24.18 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
260.39 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.06 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_skipped.bam
4.49 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
284.38 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
986.97 kB
FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
273.23 MB
fastqc
Directory
stderr.txt
1.55 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
554.05 kB
iCount reads proxy
fastqc
Directory
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.fastq.gz
67.81 MB
stderr.txt
1.83 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
519.15 kB
iCount summary
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
671.36 kB
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
423.16 kB
Paraclu
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
9.00 kB
K-mers
m1a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.tar.gz
150.62 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
679 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.fastq.gz
267.46 MB

m1A_786O_Ctrl 4H_20180413_JU

Paraclu
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
12.19 kB
iCount peaks
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
89 B
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
248.30 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
208 B
STAR
m1a-786o-ctrl-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
96.71 MB
m1a-786o-ctrl-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed.bam
792.11 MB
m1a-786o-ctrl-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m1a-786o-ctrl-4h-20180413-ju_trimmed_stats.txt
1.79 kB
iCount xlsites
m1a-786o-ctrl-4h-20180413-ju_trimmed_single.bed.gz
93.26 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed_reads_single.bed.gz
100.74 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
177.56 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-ctrl-4h-20180413-ju_trimmed_single.bedgraph
204 B
FASTQ file (single-end)
m1a-786o-ctrl-4h-20180413-ju.fastq.gz
374.22 MB
fastqc
Directory
stderr.txt
1.21 kB
m1a-786o-ctrl-4h-20180413-ju_fastqc.zip
558.70 kB
STAR
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
44.99 MB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam
178.60 MB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.99 MB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
172.29 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bw
26.61 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
iCount xlsites
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
342.13 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
371.91 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_skipped.bam
4.74 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.40 MB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
1.28 MB
iCount reads proxy
fastqc
Directory
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.fastq.gz
96.71 MB
stderr.txt
1.56 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
516.32 kB
iCount summary
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
471 B
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
803.33 kB
iCount RNA-maps
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
424.54 kB
K-mers
m1a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.tar.gz
220.40 kB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-ctrl-4h-20180413-ju_trimmed.fastq.gz
368.03 MB
report.txt
665 B

m1A_786O_NoQ plus DM-Akg 4H_20180413_JU

iCount peaks
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
100 B
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
213.49 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
219 B
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
419.80 kB
K-mers
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.tar.gz
215.78 kB
STAR
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
69.20 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam
618.74 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_reads_single.bed.gz
97.79 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
170.32 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bedgraph
226 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bed.gz
90.79 kB
STAR
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.85 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bam
129.50 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
147.04 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bw
25.09 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
32.44 MB
iCount xlsites
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.84 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
294.17 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.20 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
1.09 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
319.88 kB
FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz
289.08 MB
fastqc
Directory
stderr.txt
1.42 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_fastqc.zip
555.32 kB
iCount reads proxy
fastqc
Directory
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.fastq.gz
69.20 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
510.63 kB
stderr.txt
1.77 kB
Paraclu
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
10.09 kB
iCount summary
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
467 B
m1a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
747.22 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
676 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.fastq.gz
282.61 MB

m62A_786O_Ctrl 15min_20180413_JU

Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
m62a-786o-ctrl-15min-20180413-ju_trimmed.fastq.gz
513.67 MB
iCount peaks
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
93 B
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
236.18 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
212 B
iCount RNA-maps
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
490.49 kB
K-mers
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.tar.gz
281.08 kB
STAR
m62a-786o-ctrl-15min-20180413-ju_trimmed.bam
705.53 MB
m62a-786o-ctrl-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
121.53 MB
m62a-786o-ctrl-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m62a-786o-ctrl-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_single.bed.gz
89.05 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_single.bedgraph
212 B
m62a-786o-ctrl-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
184.78 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_reads_single.bed.gz
103.26 kB
FASTQ file (single-end)
m62a-786o-ctrl-15min-20180413-ju.fastq.gz
530.35 MB
fastqc
Directory
stderr.txt
1.28 kB
m62a-786o-ctrl-15min-20180413-ju_fastqc.zip
511.91 kB
STAR
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
54.32 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.30 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam
210.03 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
176.25 kB
iCount xlsites
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
328.68 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
392.10 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_skipped.bam
5.70 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.25 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.43 MB
iCount reads proxy
fastqc
Directory
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.fastq.gz
121.53 MB
stderr.txt
1.64 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
486.19 kB
iCount summary
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
841.14 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
473 B
Paraclu
m62a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
3.42 kB

m62A_786O_NoQ plus DM-Akg 15min_20180413_JU

iCount peaks
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
104 B
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
158.27 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
219 B
STAR
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
74.27 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_SJ.out.tab
0 B
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam
426.12 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.bam.bai
20.56 kB
iCount xlsites
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
156.33 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_reads_single.bed.gz
89.98 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bed.gz
76.79 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed_single.bedgraph
234 B
STAR
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam.bai
2.81 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
31.48 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.bam
125.66 MB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
116.50 kB
iCount xlsites
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
968.45 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
260.65 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
830.54 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
219.02 kB
FASTQ file (single-end)
m62a-786o-noq-plus-dm-akg-15min-20180413-ju.fastq.gz
327.16 MB
fastqc
Directory
stderr.txt
1.50 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_fastqc.zip
520.73 kB
iCount reads proxy
fastqc
Directory
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.fastq.gz
74.27 MB
stderr.txt
1.85 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
496.21 kB
iCount summary
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
472 B
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
681.73 kB
Paraclu
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.43 kB
iCount RNA-maps
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
453.17 kB
K-mers
m62a-786o-noq-plus-dm-akg-15min-20180413-jufastqgz-3_unmapped.tar.gz
264.98 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
679 B
m62a-786o-noq-plus-dm-akg-15min-20180413-ju_trimmed.fastq.gz
318.35 MB

m62A_786O_Ctrl 4H_20180413_JU

iCount peaks
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
90 B
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
173.04 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
209 B
STAR
m62a-786o-ctrl-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
87.49 MB
m62a-786o-ctrl-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed.bam
552.44 MB
m62a-786o-ctrl-4h-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m62a-786o-ctrl-4h-20180413-ju_trimmed_single.bed.gz
82.47 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
170.94 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_reads_single.bed.gz
96.38 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-ctrl-4h-20180413-ju_trimmed_single.bedgraph
206 B
STAR
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam.bai
3.00 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.bam
150.13 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
41.82 MB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
127.24 kB
iCount xlsites
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.10 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
239.66 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
911.74 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
284.55 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.10 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
m62a-786o-ctrl-4h-20180413-ju_fastqc.zip
516.64 kB
m62a-786o-ctrl-4h-20180413-ju.fastq.gz
400.41 MB
iCount reads proxy
fastqc
Directory
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
498.13 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.fastq.gz
87.49 MB
stderr.txt
1.58 kB
iCount summary
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
725.38 kB
Paraclu
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.64 kB
iCount RNA-maps
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
463.80 kB
K-mers
m62a-786o-ctrl-4h-20180413-jufastqgz-3_unmapped.tar.gz
263.86 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
m62a-786o-ctrl-4h-20180413-ju_trimmed.fastq.gz
384.66 MB

m6A_786O_NoQ plusDM-Akg 4H_20180413_JU

Cutadapt (single-end)
report.txt
674 B
fastqc
Directory
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed.fastq.gz
407.73 MB
STAR
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
125.42 MB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed.bam
488.41 MB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_stats.txt
1.79 kB
iCount xlsites
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
162.91 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_reads_single.bed.gz
91.61 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_single.bed.gz
80.42 kB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_trimmed_single.bedgraph
224 B
FASTQ file (single-end)
stderr.txt
1.40 kB
fastqc
Directory
m6a-786o-noq-plusdm-akg-4h-20180413-ju.fastq.gz
418.30 MB
m6a-786o-noq-plusdm-akg-4h-20180413-ju_fastqc.zip
511.70 kB
STAR
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.bam
169.11 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
39.47 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
321.60 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.bam.bai
3.69 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.bw
29.65 kB
iCount xlsites
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.77 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
780.27 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
953.33 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
2.28 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
3.26 MB
iCount reads proxy
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.fastq.gz
125.42 MB
stderr.txt
1.75 kB
fastqc
Directory
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
497.86 kB
iCount summary
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
1.13 MB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
475 B
Paraclu
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
5.78 kB
iCount RNA-maps
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
718.72 kB
K-mers
m6a-786o-noq-plusdm-akg-4h-20180413-jufastqgz-3_unmapped.tar.gz
320.73 kB

demux_nomatch.fastq.gz

FASTQ file (single-end)
demux_nomatch.fastq.gz
1.28 GB
fastqc
Directory
demux_nomatch_fastqc.zip
465.20 kB
stderr.txt
935 B

m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_2

iCount xlsites
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_single.bedgraph
230 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_reads_single.bed.gz
51.34 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_singleAndMulti.bed.gz
82.67 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_single.bed.gz
43.96 kB
STAR
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed.bam
116.53 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_unmapped.out.mate1.fastq.gz
16.78 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed.bam.bai
20.56 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_stats.txt
1.79 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed_SJ.out.tab
0 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed.bw
106.65 kB
STAR
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
8.78 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.bam
26.32 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
16.37 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.69 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.bw
18.79 kB
FASTQ file (single-end)
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2.fastq.gz
66.45 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_fastqc.zip
541.72 kB
fastqc
Directory
stderr.txt
1.46 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.81 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.fastq.gz
16.78 MB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
526.63 kB
Paraclu
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.25 kB
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
314.99 kB
K-mers
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped.tar.gz
158 B
iCount xlsites
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
162.50 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_skipped.bam
3.74 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
40.01 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
35.22 kB
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
122.68 kB
iCount summary
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
458 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
1018 B
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
117.51 kB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-4h-20180413-ju-2_trimmed.fastq.gz
65.20 MB
report.txt
677 B

m1A_786O_Ctrl 15min_20180413_JU_2

STAR
m1a-786o-ctrl-15min-20180413-ju-2_trimmed.bam.bai
20.56 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed.bam
95.64 MB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_unmapped.out.mate1.fastq.gz
11.42 MB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_SJ.out.tab
0 B
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_stats.txt
1.78 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed.bw
106.54 kB
iCount xlsites
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_single.bed.gz
38.91 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_singleAndMulti.bed.gz
74.87 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_reads_single.bed.gz
45.07 kB
m1a-786o-ctrl-15min-20180413-ju-2_trimmed_single.bedgraph
214 B
iCount reads proxy
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
538.12 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.fastq.gz
11.42 MB
stderr.txt
1.66 kB
STAR
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.bam
18.36 MB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.67 MB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.bw
18.61 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
5.77 MB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
11.64 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
K-mers
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped.tar.gz
152 B
FASTQ file (single-end)
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju-2_fastqc.zip
556.87 kB
m1a-786o-ctrl-15min-20180413-ju-2.fastq.gz
47.62 MB
stderr.txt
1.30 kB
iCount summary
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
87.33 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
886 B
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
454 B
Paraclu
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.26 kB
iCount RNA-maps
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
299.06 kB
iCount xlsites
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
28.82 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
100.14 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
139.78 kB
m1a-786o-ctrl-15min-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
32.29 kB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju-2_trimmed.fastq.gz
46.21 MB
report.txt
669 B

m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_2

Cutadapt (single-end)
report.txt
680 B
fastqc
Directory
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed.fastq.gz
72.93 MB
STAR
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_unmapped.out.mate1.fastq.gz
18.82 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed.bam
147.82 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_stats.txt
1.79 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed.bam.bai
20.56 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed.bw
106.66 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_SJ.out.tab
0 B
Paraclu
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.57 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_single.bed.gz
44.55 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_single.bedgraph
236 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_reads_single.bed.gz
51.49 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_trimmed_singleAndMulti.bed.gz
84.27 kB
STAR
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
10.01 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
17.34 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.77 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.bam
30.09 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.bw
19.00 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2.fastq.gz
75.22 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2_fastqc.zip
550.62 kB
stderr.txt
1.52 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.87 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.fastq.gz
18.82 MB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
533.71 kB
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
321.54 kB
K-mers
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped.tar.gz
160 B
iCount xlsites
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
199.49 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
42.01 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
147.05 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
47.21 kB
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_skipped.bam
3.36 kB
iCount summary
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
457 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
955 B
m1a-786o-noq-plus-dm-akg-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
130.81 kB

m1A_786O_NoQ 15min_20180413_JU_2

STAR
m1a-786o-noq-15min-20180413-ju-2_trimmed.bam.bai
20.56 kB
m1a-786o-noq-15min-20180413-ju-2_trimmed_SJ.out.tab
0 B
m1a-786o-noq-15min-20180413-ju-2_trimmed.bam
102.01 MB
m1a-786o-noq-15min-20180413-ju-2_trimmed_unmapped.out.mate1.fastq.gz
12.41 MB
m1a-786o-noq-15min-20180413-ju-2_trimmed_stats.txt
1.79 kB
m1a-786o-noq-15min-20180413-ju-2_trimmed.bw
106.55 kB
iCount xlsites
m1a-786o-noq-15min-20180413-ju-2_trimmed_single.bed.gz
40.10 kB
m1a-786o-noq-15min-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-15min-20180413-ju-2_trimmed_reads_single.bed.gz
46.57 kB
m1a-786o-noq-15min-20180413-ju-2_trimmed_single.bedgraph
212 B
m1a-786o-noq-15min-20180413-ju-2_trimmed_singleAndMulti.bed.gz
76.38 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-15min-20180413-ju-2.fastq.gz
52.08 MB
stderr.txt
1.28 kB
m1a-786o-noq-15min-20180413-ju-2_fastqc.zip
562.54 kB
STAR
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.66 MB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.bam
19.89 MB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
6.18 MB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.bw
18.39 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
10.85 kB
iCount reads proxy
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.fastq.gz
12.41 MB
fastqc
Directory
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
539.99 kB
stderr.txt
1.64 kB
iCount summary
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
455 B
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
1013 B
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
94.00 kB
Paraclu
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.21 kB
iCount RNA-maps
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
312.18 kB
K-mers
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped.tar.gz
151 B
iCount xlsites
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_skipped.bam
3.06 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
141.70 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
32.72 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
29.08 kB
m1a-786o-noq-15min-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
100.83 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
m1a-786o-noq-15min-20180413-ju-2_trimmed.fastq.gz
50.51 MB

m1A_786O_NoQ 4H_20180413_JU_2

STAR
m1a-786o-noq-4h-20180413-ju-2_trimmed_unmapped.out.mate1.fastq.gz
20.97 MB
m1a-786o-noq-4h-20180413-ju-2_trimmed.bam.bai
20.56 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed.bam
145.93 MB
m1a-786o-noq-4h-20180413-ju-2_trimmed_SJ.out.tab
0 B
m1a-786o-noq-4h-20180413-ju-2_trimmed_stats.txt
1.79 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed.bw
106.69 kB
iCount xlsites
m1a-786o-noq-4h-20180413-ju-2_trimmed_single.bed.gz
46.83 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed_singleAndMulti.bed.gz
87.68 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed_reads_single.bed.gz
54.55 kB
m1a-786o-noq-4h-20180413-ju-2_trimmed_single.bedgraph
206 B
STAR
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
11.33 MB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
19.55 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.bam
33.49 MB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.bw
19.29 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.77 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.23 kB
m1a-786o-noq-4h-20180413-ju-2.fastq.gz
80.67 MB
m1a-786o-noq-4h-20180413-ju-2_fastqc.zip
544.65 kB
iCount reads proxy
fastqc
Directory
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.fastq.gz
20.97 MB
stderr.txt
1.58 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
530.72 kB
Paraclu
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.48 kB
iCount RNA-maps
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
325.89 kB
K-mers
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped.tar.gz
149 B
iCount xlsites
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_skipped.bam
3.31 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
41.18 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
203.37 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
143.39 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
46.58 kB
iCount summary
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
457 B
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
131.89 kB
m1a-786o-noq-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
958 B
Cutadapt (single-end)
report.txt
665 B
fastqc
Directory
m1a-786o-noq-4h-20180413-ju-2_trimmed.fastq.gz
78.72 MB

GAM573A1-A32_S20_L008_R1_001.fastq.gz

FASTQ file (single-end)
GAM573A1-A32_S20_L008_R1_001.fastq.gz
4.91 GB
fastqc
Directory
stderr.txt
1.21 kB
GAM573A1-A32_S20_L008_R1_001_fastqc.zip
489.27 kB

m6A_786O_NoQ + DM-Akg 4hr_20180106_JU

iCount peaks
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
182 B
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_scores.tsv.gz
1.42 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_peaks.bedgraph
387 B
FASTQ file (single-end)
m6a-786o-noq-dm-akg-4hr-20180106-ju.fastq.gz
118.19 MB
fastqc
Directory
m6a-786o-noq-dm-akg-4hr-20180106-ju_fastqc.zip
442.94 kB
stderr.txt
1.34 kB
Paraclu
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
30.70 kB
iCount RNA-maps
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single.tar.gz
1.08 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed.fastq.gz
121.53 MB
STAR
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
38.33 MB
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed.bam
145.91 MB
iCount reads proxy
fastqc
Directory
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped.fastq.gz
38.33 MB
stderr.txt
1.66 kB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_fastqc.zip
466.29 kB
iCount xlsites
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_reads_single.bed.gz
83.28 kB
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_single.bed.gz
80.36 kB
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_single.bedgraph
222 B
m6a-786o-noq-dm-akg-4hr-20180106-ju_trimmed_singleAndMulti.bed.gz
124.47 kB
STAR
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_SJ.out.tab
761.15 kB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped.bam
70.00 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped.bw
36.51 kB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
8.86 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped.bam.bai
3.56 MB
iCount xlsites
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
2.39 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
4.33 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single.bed.gz
2.20 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_skipped.bam
3.17 kB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single.bedgraph
10.22 MB
iCount summary
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
472 B
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.38 MB
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
K-mers
m6a-786o-noq-dm-akg-4hr-20180106-jufastqgz_unmapped.tar.gz
371.24 kB

m6A_786O_Ctrl 24r_20180106_JU

STAR
m6a-786o-ctrl-24r-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-24r-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
18.10 MB
m6a-786o-ctrl-24r-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-24r-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-24r-20180106-ju_trimmed.bam
70.64 MB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-ctrl-24r-20180106-ju_trimmed.fastq.gz
59.37 MB
report.txt
666 B
FASTQ file (single-end)
m6a-786o-ctrl-24r-20180106-ju.fastq.gz
57.59 MB
fastqc
Directory
m6a-786o-ctrl-24r-20180106-ju_fastqc.zip
435.60 kB
stderr.txt
1.23 kB
iCount xlsites
m6a-786o-ctrl-24r-20180106-ju_trimmed_single.bed.gz
67.72 kB
m6a-786o-ctrl-24r-20180106-ju_trimmed_singleAndMulti.bed.gz
100.38 kB
m6a-786o-ctrl-24r-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-ctrl-24r-20180106-ju_trimmed_reads_single.bed.gz
69.64 kB
m6a-786o-ctrl-24r-20180106-ju_trimmed_single.bedgraph
206 B
iCount reads proxy
fastqc
Directory
stderr.txt
1.54 kB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped.fastq.gz
18.10 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_fastqc.zip
467.44 kB
STAR
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped.bam.bai
2.92 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped.bam
34.75 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_SJ.out.tab
474.61 kB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.00 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped.bw
28.55 kB
iCount xlsites
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_skipped.bam
3.26 kB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
2.40 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single.bedgraph
5.89 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_reads_single.bed.gz
1.39 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single.bed.gz
1.29 MB
Paraclu
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single_peaks.bed.gz
13.22 kB
iCount RNA-maps
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single.tar.gz
872.47 kB
iCount summary
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.14 MB
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single_summary_type.tsv
470 B
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
K-mers
m6a-786o-ctrl-24r-20180106-jufastqgz_unmapped.tar.gz
330.06 kB

m6A_786O_NoQ + DM-Akg 24hr_20180106_JU

iCount RNA-maps
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single.tar.gz
1.13 MB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-24hr-20180106-ju_fastqc.zip
447.12 kB
m6a-786o-noq-dm-akg-24hr-20180106-ju.fastq.gz
109.23 MB
stderr.txt
1.36 kB
Paraclu
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
31.49 kB
Cutadapt (single-end)
report.txt
674 B
fastqc
Directory
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed.fastq.gz
112.47 MB
STAR
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
32.76 MB
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed.bam
134.59 MB
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_stats.txt
1.78 kB
iCount reads proxy
fastqc
Directory
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped.fastq.gz
32.76 MB
stderr.txt
1.76 kB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_fastqc.zip
474.04 kB
iCount xlsites
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_reads_single.bed.gz
83.79 kB
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_single.bed.gz
81.56 kB
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_single.bedgraph
224 B
m6a-786o-noq-dm-akg-24hr-20180106-ju_trimmed_singleAndMulti.bed.gz
125.54 kB
STAR
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
7.00 MB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped.bam.bai
3.32 MB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped.bam
61.99 MB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_SJ.out.tab
868.85 kB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped.bw
37.29 kB
iCount xlsites
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_skipped.bam
3.53 kB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
4.20 MB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single.bed.gz
2.30 MB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
2.46 MB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single.bedgraph
10.74 MB
iCount summary
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
472 B
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.35 MB
K-mers
m6a-786o-noq-dm-akg-24hr-20180106-jufastqgz_unmapped.tar.gz
374.65 kB

IgG_786O_Rabbit IgG_20180106_JU

FASTQ file (single-end)
igg-786o-rabbit-igg-20180106-ju.fastq.gz
12.51 MB
igg-786o-rabbit-igg-20180106-ju_fastqc.zip
569.95 kB
stderr.txt
1.26 kB
fastqc
Directory
Paraclu
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single_peaks.bed.gz
140 B
Cutadapt (single-end)
fastqc
Directory
igg-786o-rabbit-igg-20180106-ju_trimmed.fastq.gz
12.96 MB
report.txt
667 B
STAR
igg-786o-rabbit-igg-20180106-ju_trimmed_SJ.out.tab
0 B
igg-786o-rabbit-igg-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
2.34 MB
igg-786o-rabbit-igg-20180106-ju_trimmed_stats.txt
1.78 kB
igg-786o-rabbit-igg-20180106-ju_trimmed.bam.bai
19.09 kB
igg-786o-rabbit-igg-20180106-ju_trimmed.bam
12.25 MB
igg-786o-rabbit-igg-20180106-ju_trimmed.bw
105.61 kB
iCount xlsites
igg-786o-rabbit-igg-20180106-ju_trimmed_single.bed.gz
19.35 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_skipped.bam
3.93 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_singleAndMulti.bed.gz
26.40 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_reads_single.bed.gz
24.05 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_single.bedgraph
210 B
iCount reads proxy
fastqc
Directory
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped.fastq.gz
2.34 MB
stderr.txt
1.62 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_fastqc.zip
614.90 kB
STAR
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
567.32 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped.bam.bai
1.52 MB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped.bam
3.52 MB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_stats.txt
1.80 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_SJ.out.tab
3.84 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped.bw
17.82 kB
iCount xlsites
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_skipped.bam
2.90 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_reads_single.bed.gz
12.30 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single.bedgraph
34.70 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single.bed.gz
10.75 kB
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_singleAndMulti.bed.gz
43.25 kB
iCount RNA-maps
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single.tar.gz
318.62 kB
iCount summary
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single_summary_type.tsv
452 B
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single_summary_subtype.tsv
922 B
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped_single_summary_gene.tsv
63.03 kB
K-mers
igg-786o-rabbit-igg-20180106-jufastqgz-2_unmapped.tar.gz
151 B

m6A_786O_NoQ + DM-Akg 3min_20180106_JU

iCount RNA-maps
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single.tar.gz
840.23 kB
K-mers
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped.tar.gz
326.68 kB
STAR
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
5.83 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped.bam.bai
3.24 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped.bam
42.43 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_SJ.out.tab
423.97 kB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped.bw
30.36 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-3min-20180106-ju.fastq.gz
77.77 MB
stderr.txt
1.36 kB
m6a-786o-noq-dm-akg-3min-20180106-ju_fastqc.zip
444.97 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed.fastq.gz
79.88 MB
STAR
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed.bam
95.42 MB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
23.06 MB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_stats.txt
1.78 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.76 kB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped.fastq.gz
23.06 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_fastqc.zip
473.21 kB
iCount xlsites
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_reads_single.bed.gz
75.78 kB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_single.bed.gz
72.64 kB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_singleAndMulti.bed.gz
112.44 kB
m6a-786o-noq-dm-akg-3min-20180106-ju_trimmed_single.bedgraph
224 B
iCount xlsites
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single.bed.gz
1.24 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
2.58 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_skipped.bam
3.42 kB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_reads_single.bed.gz
1.36 MB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single.bedgraph
5.60 MB
Paraclu
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
12.37 kB
iCount summary
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single_summary_type.tsv
469 B
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-noq-dm-akg-3min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.19 MB

m6A_786O_Ctrl 15min_20180106_JU

iCount xlsites
m6a-786o-ctrl-15min-20180106-ju_trimmed_reads_single.bed.gz
30.15 kB
m6a-786o-ctrl-15min-20180106-ju_trimmed_single.bed.gz
24.85 kB
m6a-786o-ctrl-15min-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-ctrl-15min-20180106-ju_trimmed_singleAndMulti.bed.gz
31.83 kB
m6a-786o-ctrl-15min-20180106-ju_trimmed_single.bedgraph
210 B
STAR
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
1.27 MB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.bam
7.55 MB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.bam.bai
1.57 MB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_SJ.out.tab
8.16 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.bw
18.35 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
668 B
m6a-786o-ctrl-15min-20180106-ju_trimmed.fastq.gz
30.95 MB
iCount peaks
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
90 B
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_scores.tsv.gz
16.19 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_peaks.bedgraph
211 B
FASTQ file (single-end)
m6a-786o-ctrl-15min-20180106-ju_fastqc.zip
502.69 kB
fastqc
Directory
m6a-786o-ctrl-15min-20180106-ju.fastq.gz
29.93 MB
stderr.txt
1.26 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.58 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.fastq.gz
6.05 MB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_fastqc.zip
556.93 kB
Paraclu
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
154 B
iCount RNA-maps
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single.tar.gz
358.12 kB
STAR
m6a-786o-ctrl-15min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
6.05 MB
m6a-786o-ctrl-15min-20180106-ju_trimmed.bam
29.51 MB
m6a-786o-ctrl-15min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-15min-20180106-ju_trimmed.bw
105.63 kB
m6a-786o-ctrl-15min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-15min-20180106-ju_trimmed.bam.bai
19.02 kB
iCount xlsites
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_skipped.bam
2.90 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single.bed.gz
21.69 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single.bedgraph
73.36 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
70.11 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_reads_single.bed.gz
25.87 kB
K-mers
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped.tar.gz
151 B
iCount summary
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
868 B
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
139.05 kB
m6a-786o-ctrl-15min-20180106-jufastqgz_unmapped_single_summary_type.tsv
449 B

m6A_786O_NoQ + DM-Akg 15min_20180106_JU

Paraclu
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
195 B
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-15min-20180106-ju.fastq.gz
39.41 MB
m6a-786o-noq-dm-akg-15min-20180106-ju_fastqc.zip
546.88 kB
stderr.txt
1.38 kB
iCount peaks
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
96 B
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_scores.tsv.gz
24.32 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_peaks.bedgraph
219 B
K-mers
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped.tar.gz
59.38 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed.fastq.gz
40.67 MB
report.txt
674 B
STAR
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
8.33 MB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed.bam.bai
19.09 kB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed.bam
39.74 MB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed.bw
105.75 kB
iCount xlsites
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_reads_single.bed.gz
34.18 kB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_single.bedgraph
226 B
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_singleAndMulti.bed.gz
37.20 kB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-dm-akg-15min-20180106-ju_trimmed_single.bed.gz
28.37 kB
iCount reads proxy
fastqc
Directory
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped.fastq.gz
8.33 MB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_fastqc.zip
561.17 kB
stderr.txt
1.69 kB
STAR
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
1.75 MB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped.bam.bai
1.63 MB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped.bam
10.22 MB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_SJ.out.tab
11.83 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped.bw
18.62 kB
iCount xlsites
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_skipped.bam
2.90 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single.bed.gz
32.97 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
106.82 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_reads_single.bed.gz
39.01 kB
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single.bedgraph
113.34 kB
iCount RNA-maps
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single.tar.gz
394.54 kB
iCount summary
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_summary_type.tsv
458 B
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1009 B
m6a-786o-noq-dm-akg-15min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
195.78 kB

Input_Control-for-NoMet 4hrs_20180223_JU

iCount summary
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_gene.tsv
361.86 kB
STAR
demux_NNNNATCTGTTANNNNN.bam.bai
2.80 MB
demux_NNNNATCTGTTANNNNN_unmapped.out.mate1.fastq.gz
19.23 MB
demux_NNNNATCTGTTANNNNN_SJ.out.tab
60.13 kB
demux_NNNNATCTGTTANNNNN.bam
162.41 MB
demux_NNNNATCTGTTANNNNN_stats.txt
1.80 kB
Reads (single-end)
demux_NNNNATCTGTTANNNNN.fastq.gz
35.59 MB
fastqc
Directory
demux_NNNNATCTGTTANNNNN_fastqc.zip
397.82 kB
stderr.txt
1.05 kB
iCount xlsites
demux_NNNNATCTGTTANNNNN_skipped.bam
553.25 kB
demux_NNNNATCTGTTANNNNN_unique.bedgraph
552.40 kB
demux_NNNNATCTGTTANNNNN_unique.bed.gz
152.41 kB
demux_NNNNATCTGTTANNNNN_multi.bed.gz
1.24 MB

IgG_Rabbit_IgG_20180106_JU

iCount xlsites
demux_NNNNAGTTANNN_skipped.bam
605.18 kB
demux_NNNNAGTTANNN_multi.bed.gz
368.90 kB
demux_NNNNAGTTANNN_unique.bed.gz
32.61 kB
STAR
demux_NNNNAGTTANNN.bam.bai
1.81 MB
demux_NNNNAGTTANNN_unmapped.out.mate1.fastq.gz
2.92 MB
demux_NNNNAGTTANNN.bam
80.37 MB
demux_NNNNAGTTANNN_stats.txt
1.79 kB
demux_NNNNAGTTANNN_SJ.out.tab
18.59 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.00 kB
demux_NNNNAGTTANNN.fastq.gz
16.32 MB
demux_NNNNAGTTANNN_fastqc.zip
458.95 kB

m6A_786O_Ctrl 24H_20180106_JU

iCount summary
m6A_786O_Ctrl24H_20180106_JU_unmapped_single_summary_type.tsv
266 B
m6A_786O_Ctrl24H_20180106_JU_unmapped_single_summary_gene.tsv
807.69 kB
m6A_786O_Ctrl24H_20180106_JU_unmapped_single_summary_subtype.tsv
642 B
iCount xlsites
m6A_786O_Ctrl24H_20180106_JU_unmapped_single.bed.gz
1.26 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_singleAndMulti.bed.gz
2.25 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_single.bedgraph
5.77 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_skipped.bam
3.30 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.17 kB
m6a-786o-ctrl-24h-20180106-ju.fastq.gz
58.96 MB
m6a-786o-ctrl-24h-20180106-ju_fastqc.zip
438.37 kB
STAR
m6A_786O_Ctrl24H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
4.88 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped.bam.bai
2.79 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_stats.txt
1.80 kB
m6A_786O_Ctrl24H_20180106_JU_unmapped.bam
41.07 MB
m6A_786O_Ctrl24H_20180106_JU_unmapped_SJ.out.tab
468.18 kB
m6A_786O_Ctrl24H_20180106_JU_unmapped.bw
28.30 kB
iCount xlsites
m6a-786o-ctrl-24h-20180106-ju_trimmed_singleAndMulti.bed.gz
100.59 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_single.bed.gz
68.12 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_single.bedgraph
190 B
STAR
m6a-786o-ctrl-24h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
18.18 MB
m6a-786o-ctrl-24h-20180106-ju_trimmed.bam
93.08 MB
m6a-786o-ctrl-24h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-24h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-24h-20180106-ju_trimmed.bw
106.30 kB
iCount reads proxy
fastqc
Directory
m6A_786O_Ctrl24H_20180106_JU_unmapped.fastq.gz
18.18 MB
stderr.txt
1.38 kB
m6A_786O_Ctrl24H_20180106_JU_unmapped_fastqc.zip
466.32 kB
Cutadapt (single-end)
m6a-786o-ctrl-24h-20180106-ju_trimmed.fastq.gz
60.69 MB
fastqc
Directory
report.txt
697 B
m6a-786o-ctrl-24h-20180106-ju_trimmed_fastqc.zip
437.90 kB

m6A_NoQ_4H_20180106_JU

Reads (single-end)
fastqc
Directory
demux_NNNNGGAGCNNN.fastq.gz
165.15 MB
stderr.txt
975 B
demux_NNNNGGAGCNNN_fastqc.zip
424.04 kB
STAR
demux_NNNNGGAGCNNN_unmapped.out.mate1.fastq.gz
21.83 MB
demux_NNNNGGAGCNNN.bam
1.26 GB
demux_NNNNGGAGCNNN.bam.bai
4.70 MB
demux_NNNNGGAGCNNN_stats.txt
1.81 kB
demux_NNNNGGAGCNNN_SJ.out.tab
1.26 MB
iCount xlsites
demux_NNNNGGAGCNNN_multi.bed.gz
6.75 MB
demux_NNNNGGAGCNNN_unique.bed.gz
2.72 MB
demux_NNNNGGAGCNNN_skipped.bam
10.04 MB

m1A_786O_NoQ plus DM-Akg 4H_20180413_JU

iCount xlsites
demux_NNNNTATGANNN_skipped.bam
5.99 MB
demux_NNNNTATGANNN_multi.bed.gz
1.73 MB
demux_NNNNTATGANNN_unique.bed.gz
329.66 kB
demux_NNNNTATGANNN_unique.bedgraph
1.24 MB
STAR
demux_NNNNTATGANNN_unmapped.out.mate1.fastq.gz
115.52 MB
demux_NNNNTATGANNN.bam.bai
3.13 MB
demux_NNNNTATGANNN_SJ.out.tab
173.00 kB
demux_NNNNTATGANNN_stats.txt
1.81 kB
demux_NNNNTATGANNN.bam
1.18 GB
iCount peaks
demux_NNNNTATGANNN_unique_peaks.bed.gz
70.17 kB
demux_NNNNTATGANNN_unique_scores.tsv.gz
391.36 kB
demux_NNNNTATGANNN_unique_peaks.bedgraph
155.46 kB
iCount summary
demux_NNNNTATGANNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTATGANNN_unique_summary.tsv_summary_gene.tsv
534.25 kB
demux_NNNNTATGANNN_unique_summary.tsv_summary_subtype.tsv
645 B
Reads (single-end)
fastqc
Directory
demux_NNNNTATGANNN.fastq.gz
282.16 MB
stderr.txt
975 B
demux_NNNNTATGANNN_fastqc.zip
502.13 kB

IgG_786O_Rabbit IgG_20180413_JU

STAR
igg-786o-rabbit-igg-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
10.09 MB
igg-786o-rabbit-igg-20180413-ju_trimmed_SJ.out.tab
0 B
igg-786o-rabbit-igg-20180413-ju_trimmed.bam
49.81 MB
igg-786o-rabbit-igg-20180413-ju_trimmed_stats.txt
1.78 kB
igg-786o-rabbit-igg-20180413-ju_trimmed.bam.bai
20.56 kB
igg-786o-rabbit-igg-20180413-ju_trimmed.bw
106.67 kB
iCount reads proxy
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.fastq.gz
10.09 MB
fastqc
Directory
stderr.txt
1.62 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_fastqc.zip
526.33 kB
iCount xlsites
igg-786o-rabbit-igg-20180413-ju_trimmed_skipped.bam
3.93 kB
igg-786o-rabbit-igg-20180413-ju_trimmed_singleAndMulti.bed.gz
94.82 kB
igg-786o-rabbit-igg-20180413-ju_trimmed_reads_single.bed.gz
61.41 kB
igg-786o-rabbit-igg-20180413-ju_trimmed_single.bed.gz
53.18 kB
igg-786o-rabbit-igg-20180413-ju_trimmed_single.bedgraph
210 B
STAR
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.bam.bai
1.94 MB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
3.90 MB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.bam
16.43 MB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.bw
21.21 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_SJ.out.tab
37.61 kB
iCount RNA-maps
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single.tar.gz
405.92 kB
K-mers
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped.tar.gz
151 B
FASTQ file (single-end)
fastqc
Directory
igg-786o-rabbit-igg-20180413-ju.fastq.gz
43.14 MB
stderr.txt
1.33 kB
igg-786o-rabbit-igg-20180413-ju_fastqc.zip
539.35 kB
iCount xlsites
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single.bed.gz
76.46 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
316.11 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single.bedgraph
274.81 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
88.84 kB
iCount summary
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
460 B
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
353.19 kB
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1010 B
Paraclu
igg-786o-rabbit-igg-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
636 B
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
igg-786o-rabbit-igg-20180413-ju_trimmed.fastq.gz
41.80 MB

m6A_786O_NoQ 15min_20180413_JU

STAR
m6a-786o-noq-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
106.12 MB
m6a-786o-noq-15min-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-noq-15min-20180413-ju_trimmed.bam
419.22 MB
iCount reads proxy
fastqc
Directory
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.fastq.gz
106.12 MB
stderr.txt
1.60 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
472.65 kB
iCount xlsites
m6a-786o-noq-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
139.81 kB
m6a-786o-noq-15min-20180413-ju_trimmed_single.bed.gz
67.02 kB
m6a-786o-noq-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-15min-20180413-ju_trimmed_reads_single.bed.gz
79.07 kB
m6a-786o-noq-15min-20180413-ju_trimmed_single.bedgraph
208 B
STAR
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.23 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam
143.42 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
40.44 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
159.59 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bw
25.86 kB
iCount xlsites
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_skipped.bam
3.88 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.29 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.35 MB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
425.08 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
347.95 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.25 kB
m6a-786o-noq-15min-20180413-ju_fastqc.zip
516.45 kB
m6a-786o-noq-15min-20180413-ju.fastq.gz
375.26 MB
iCount summary
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
874.67 kB
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
471 B
Paraclu
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.93 kB
iCount RNA-maps
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
547.40 kB
K-mers
m6a-786o-noq-15min-20180413-jufastqgz-3_unmapped.tar.gz
293.08 kB
Cutadapt (single-end)
report.txt
668 B
fastqc
Directory
m6a-786o-noq-15min-20180413-ju_trimmed.fastq.gz
355.57 MB

m6A_786O_NoQ 4H_20180413_JU

iCount summary
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
475 B
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
1.13 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-4h-20180413-ju_trimmed.fastq.gz
435.47 MB
report.txt
663 B
STAR
m6a-786o-noq-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
138.77 MB
m6a-786o-noq-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-4h-20180413-ju_trimmed.bam
521.45 MB
m6a-786o-noq-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m6a-786o-noq-4h-20180413-ju_trimmed.bam.bai
20.56 kB
iCount xlsites
m6a-786o-noq-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
166.89 kB
m6a-786o-noq-4h-20180413-ju_trimmed_single.bed.gz
81.42 kB
m6a-786o-noq-4h-20180413-ju_trimmed_single.bedgraph
202 B
m6a-786o-noq-4h-20180413-ju_trimmed_reads_single.bed.gz
92.77 kB
STAR
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam.bai
3.76 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
44.77 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam
187.81 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bw
30.40 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
332.33 kB
iCount xlsites
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.34 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
811.69 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
3.41 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
2.40 MB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
993.21 kB
FASTQ file (single-end)
m6a-786o-noq-4h-20180413-ju.fastq.gz
447.15 MB
stderr.txt
1.19 kB
fastqc
Directory
m6a-786o-noq-4h-20180413-ju_fastqc.zip
509.90 kB
iCount reads proxy
fastqc
Directory
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
477.64 kB
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.fastq.gz
138.77 MB
stderr.txt
1.54 kB
Paraclu
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
6.28 kB
iCount RNA-maps
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
722.01 kB
K-mers
m6a-786o-noq-4h-20180413-jufastqgz-3_unmapped.tar.gz
327.99 kB

m1A_786O_Ctrl 15min_20180413_JU

iCount peaks
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
92 B
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
120.56 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
211 B
STAR
m1a-786o-ctrl-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
40.27 MB
m1a-786o-ctrl-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed.bam
293.10 MB
m1a-786o-ctrl-15min-20180413-ju_trimmed_SJ.out.tab
0 B
iCount reads proxy
fastqc
Directory
stderr.txt
1.62 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
522.70 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.fastq.gz
40.27 MB
iCount xlsites
m1a-786o-ctrl-15min-20180413-ju_trimmed_single.bed.gz
75.28 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed_reads_single.bed.gz
81.53 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
137.88 kB
m1a-786o-ctrl-15min-20180413-ju_trimmed_single.bedgraph
210 B
m1a-786o-ctrl-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
STAR
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam.bai
2.39 MB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bw
22.14 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
19.47 MB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.bam
73.62 MB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
79.98 kB
iCount xlsites
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_skipped.bam
3.37 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
715.71 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
619.87 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
180.63 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
166.21 kB
FASTQ file (single-end)
m1a-786o-ctrl-15min-20180413-ju.fastq.gz
151.63 MB
stderr.txt
1.26 kB
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju_fastqc.zip
556.53 kB
iCount summary
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
463 B
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
485.61 kB
iCount RNA-maps
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
385.26 kB
Paraclu
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
6.15 kB
K-mers
m1a-786o-ctrl-15min-20180413-jufastqgz-3_unmapped.tar.gz
142.80 kB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-ctrl-15min-20180413-ju_trimmed.fastq.gz
148.16 MB
report.txt
668 B

m1A_786O_NoQ 15min_20180413_JU

Paraclu
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
10.36 kB
iCount summary
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
470 B
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
747.00 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.02 kB
iCount peaks
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
91 B
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
225.28 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
210 B
Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
m1a-786o-noq-15min-20180413-ju_trimmed.fastq.gz
348.30 MB
STAR
m1a-786o-noq-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-15min-20180413-ju_trimmed.bam
732.98 MB
m1a-786o-noq-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
89.13 MB
m1a-786o-noq-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-noq-15min-20180413-ju_trimmed_SJ.out.tab
0 B
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-15min-20180413-ju.fastq.gz
355.98 MB
stderr.txt
1.25 kB
m1a-786o-noq-15min-20180413-ju_fastqc.zip
553.71 kB
STAR
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
42.58 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
155.01 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam
163.18 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bw
24.88 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam.bai
2.92 MB
iCount xlsites
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.26 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
310.60 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_skipped.bam
4.57 kB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.16 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
339.49 kB
iCount reads proxy
stderr.txt
1.60 kB
fastqc
Directory
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.fastq.gz
89.13 MB
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
513.19 kB
iCount xlsites
m1a-786o-noq-15min-20180413-ju_trimmed_single.bed.gz
91.36 kB
m1a-786o-noq-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
172.80 kB
m1a-786o-noq-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-15min-20180413-ju_trimmed_reads_single.bed.gz
98.89 kB
m1a-786o-noq-15min-20180413-ju_trimmed_single.bedgraph
208 B
iCount RNA-maps
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
434.43 kB
K-mers
m1a-786o-noq-15min-20180413-jufastqgz-3_unmapped.tar.gz
218.05 kB

m1A_786O_NoQ 4H_20180413_JU

iCount peaks
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
88 B
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
159.30 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
207 B
STAR
m1a-786o-noq-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
51.29 MB
m1a-786o-noq-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m1a-786o-noq-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-4h-20180413-ju_trimmed.bam
430.76 MB
m1a-786o-noq-4h-20180413-ju_trimmed_stats.txt
1.79 kB
iCount xlsites
m1a-786o-noq-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
151.18 kB
m1a-786o-noq-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-4h-20180413-ju_trimmed_single.bed.gz
80.63 kB
m1a-786o-noq-4h-20180413-ju_trimmed_single.bedgraph
202 B
m1a-786o-noq-4h-20180413-ju_trimmed_reads_single.bed.gz
86.86 kB
STAR
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.63 MB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam
94.87 MB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
24.56 MB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
102.98 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bw
23.90 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-4h-20180413-ju_fastqc.zip
558.39 kB
m1a-786o-noq-4h-20180413-ju.fastq.gz
201.53 MB
stderr.txt
1.19 kB
iCount xlsites
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
942.10 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_skipped.bam
4.09 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
218.55 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
236.57 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
818.15 kB
iCount RNA-maps
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
400.46 kB
Paraclu
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
7.89 kB
iCount reads proxy
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.fastq.gz
51.29 MB
fastqc
Directory
stderr.txt
1.62 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
518.41 kB
iCount summary
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
467 B
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
595.30 kB
K-mers
m1a-786o-noq-4h-20180413-jufastqgz-3_unmapped.tar.gz
146.25 kB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-noq-4h-20180413-ju_trimmed.fastq.gz
197.57 MB
report.txt
664 B

m62A_786O_NoQ plus DM-Akg 4H_20180413_JU

iCount reads proxy
fastqc
Directory
stderr.txt
1.88 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
501.93 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.fastq.gz
86.44 MB
iCount peaks
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
101 B
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
180.46 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
219 B
FASTQ file (single-end)
fastqc
Directory
m62a-786o-noq-plus-dm-akg-4h-20180413-ju.fastq.gz
379.34 MB
stderr.txt
1.44 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_fastqc.zip
516.21 kB
iCount summary
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
474 B
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
746.49 kB
Paraclu
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.62 kB
iCount RNA-maps
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
478.68 kB
STAR
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
86.44 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam
514.80 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.bam.bai
20.56 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_stats.txt
1.79 kB
iCount xlsites
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bedgraph
228 B
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_single.bed.gz
80.00 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_reads_single.bed.gz
93.27 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
163.89 kB
STAR
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
38.08 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
127.20 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.93 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.bam
142.83 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
iCount xlsites
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
298.24 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
957.99 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
250.15 kB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.06 MB
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped_skipped.bam
3.14 kB
K-mers
m62a-786o-noq-plus-dm-akg-4h-20180413-jufastqgz-3_unmapped.tar.gz
269.38 kB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-noq-plus-dm-akg-4h-20180413-ju_trimmed.fastq.gz
366.71 MB
report.txt
677 B

m62A_786O_NoQ 15min_20180413_JU

iCount peaks
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
92 B
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
222.55 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
211 B
iCount xlsites
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_skipped.bam
3.48 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bed.gz
309.54 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
372.28 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1.18 MB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.bedgraph
1.18 MB
STAR
m62a-786o-noq-15min-20180413-ju_trimmed.bam.bai
20.56 kB
m62a-786o-noq-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
104.01 MB
m62a-786o-noq-15min-20180413-ju_trimmed_SJ.out.tab
0 B
m62a-786o-noq-15min-20180413-ju_trimmed.bam
597.02 MB
m62a-786o-noq-15min-20180413-ju_trimmed_stats.txt
1.79 kB
iCount xlsites
m62a-786o-noq-15min-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-noq-15min-20180413-ju_trimmed_single.bed.gz
81.45 kB
m62a-786o-noq-15min-20180413-ju_trimmed_single.bedgraph
210 B
m62a-786o-noq-15min-20180413-ju_trimmed_reads_single.bed.gz
94.84 kB
m62a-786o-noq-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
164.00 kB
STAR
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam.bai
3.00 MB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
42.65 MB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped.bam
172.56 MB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_SJ.out.tab
174.16 kB
iCount RNA-maps
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single.tar.gz
493.25 kB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-noq-15min-20180413-ju.fastq.gz
462.69 MB
stderr.txt
1.26 kB
m62a-786o-noq-15min-20180413-ju_fastqc.zip
519.80 kB
iCount reads proxy
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped.fastq.gz
104.01 MB
fastqc
Directory
stderr.txt
1.62 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_fastqc.zip
499.04 kB
iCount summary
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
476 B
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
814.14 kB
Paraclu
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.91 kB
K-mers
m62a-786o-noq-15min-20180413-jufastqgz-3_unmapped.tar.gz
280.98 kB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-noq-15min-20180413-ju_trimmed.fastq.gz
452.83 MB
report.txt
667 B

m62A_786O_NoQ 4H_20180413_JU

iCount peaks
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
89 B
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_scores.tsv.gz
153.16 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bedgraph
208 B
Cutadapt (single-end)
fastqc
Directory
report.txt
665 B
m62a-786o-noq-4h-20180413-ju_trimmed.fastq.gz
305.93 MB
STAR
m62a-786o-noq-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
72.83 MB
m62a-786o-noq-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m62a-786o-noq-4h-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-noq-4h-20180413-ju_trimmed.bam
447.58 MB
m62a-786o-noq-4h-20180413-ju_trimmed.bam.bai
20.56 kB
STAR
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam.bai
2.87 MB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bam
123.91 MB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_stats.txt
1.81 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
33.52 MB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.bw
25.16 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_SJ.out.tab
109.65 kB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-noq-4h-20180413-ju.fastq.gz
317.46 MB
stderr.txt
1.21 kB
m62a-786o-noq-4h-20180413-ju_fastqc.zip
515.66 kB
iCount xlsites
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bed.gz
211.95 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
1004.90 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_skipped.bam
5.15 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
251.59 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.bedgraph
801.84 kB
iCount reads proxy
fastqc
Directory
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_fastqc.zip
492.89 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.fastq.gz
72.83 MB
stderr.txt
1.56 kB
iCount xlsites
m62a-786o-noq-4h-20180413-ju_trimmed_single.bed.gz
79.28 kB
m62a-786o-noq-4h-20180413-ju_trimmed_skipped.bam
3.93 kB
m62a-786o-noq-4h-20180413-ju_trimmed_reads_single.bed.gz
92.53 kB
m62a-786o-noq-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
163.12 kB
m62a-786o-noq-4h-20180413-ju_trimmed_single.bedgraph
204 B
iCount summary
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
468 B
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
674.06 kB
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
1.01 kB
Paraclu
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
2.27 kB
iCount RNA-maps
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped_single.tar.gz
453.16 kB
K-mers
m62a-786o-noq-4h-20180413-jufastqgz-3_unmapped.tar.gz
256.98 kB

DBR1_si-eIF4A3 Sample2_20180223_JU

iCount summary
demux_NNNNATCCANNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_gene.tsv
655.77 kB
demux_NNNNATCCANNN_unique_summary.tsv_summary_type.tsv
260 B
STAR
demux_NNNNATCCANNN_unmapped.out.mate1.fastq.gz
40.52 MB
demux_NNNNATCCANNN_stats.txt
1.81 kB
demux_NNNNATCCANNN.bam
299.73 MB
demux_NNNNATCCANNN_SJ.out.tab
115.12 kB
demux_NNNNATCCANNN.bam.bai
4.08 MB
iCount xlsites
demux_NNNNATCCANNN_unique.bed.gz
501.76 kB
demux_NNNNATCCANNN_multi.bed.gz
2.09 MB
demux_NNNNATCCANNN_skipped.bam
1.63 MB
demux_NNNNATCCANNN_unique.bedgraph
1.92 MB

m1A_786O_Ctrl 3min_20180413_JU

STAR
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped.bam.bai
1.67 MB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
10.62 MB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped.bam
33.18 MB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_SJ.out.tab
11.81 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped.bw
18.44 kB
STAR
m1a-786o-ctrl-3min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed_SJ.out.tab
0 B
m1a-786o-ctrl-3min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed.bam
165.86 MB
m1a-786o-ctrl-3min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
20.96 MB
m1a-786o-ctrl-3min-20180413-ju_trimmed.bw
106.65 kB
iCount reads proxy
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped.fastq.gz
20.96 MB
fastqc
Directory
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_fastqc.zip
528.33 kB
stderr.txt
1.60 kB
iCount xlsites
m1a-786o-ctrl-3min-20180413-ju_trimmed_reads_single.bed.gz
43.85 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed_single.bed.gz
36.82 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed_singleAndMulti.bed.gz
74.33 kB
m1a-786o-ctrl-3min-20180413-ju_trimmed_single.bedgraph
208 B
FASTQ file (single-end)
fastqc
Directory
m1a-786o-ctrl-3min-20180413-ju.fastq.gz
82.87 MB
stderr.txt
1.25 kB
m1a-786o-ctrl-3min-20180413-ju_fastqc.zip
561.00 kB
iCount RNA-maps
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single.tar.gz
307.03 kB
iCount xlsites
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single.bedgraph
101.21 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single.bed.gz
29.38 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
33.40 kB
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
144.48 kB
iCount summary
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
456 B
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
953 B
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
90.64 kB
Paraclu
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.09 kB
K-mers
m1a-786o-ctrl-3min-20180413-jufastqgz-3_unmapped.tar.gz
151 B
Cutadapt (single-end)
fastqc
Directory
m1a-786o-ctrl-3min-20180413-ju_trimmed.fastq.gz
80.77 MB
report.txt
666 B

m1A_786O_NoQ 3min_20180413_JU

STAR
m1a-786o-noq-3min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-3min-20180413-ju_trimmed_SJ.out.tab
0 B
m1a-786o-noq-3min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-noq-3min-20180413-ju_trimmed.bam
205.99 MB
m1a-786o-noq-3min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
26.35 MB
m1a-786o-noq-3min-20180413-ju_trimmed.bw
106.73 kB
iCount xlsites
m1a-786o-noq-3min-20180413-ju_trimmed_single.bed.gz
39.77 kB
m1a-786o-noq-3min-20180413-ju_trimmed_singleAndMulti.bed.gz
79.18 kB
m1a-786o-noq-3min-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-3min-20180413-ju_trimmed_reads_single.bed.gz
47.22 kB
m1a-786o-noq-3min-20180413-ju_trimmed_single.bedgraph
206 B
STAR
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.bam
41.60 MB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
13.43 MB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.bam.bai
1.72 MB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_SJ.out.tab
14.29 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.bw
18.59 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-3min-20180413-ju_fastqc.zip
557.08 kB
stderr.txt
1.23 kB
m1a-786o-noq-3min-20180413-ju.fastq.gz
103.90 MB
iCount reads proxy
fastqc
Directory
stderr.txt
1.58 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.fastq.gz
26.35 MB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_fastqc.zip
523.97 kB
Paraclu
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.17 kB
iCount RNA-maps
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single.tar.gz
316.23 kB
K-mers
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped.tar.gz
149 B
iCount xlsites
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single.bed.gz
34.39 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single.bedgraph
119.25 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
166.31 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
38.95 kB
iCount summary
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
951 B
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
457 B
m1a-786o-noq-3min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
104.95 kB
Cutadapt (single-end)
report.txt
666 B
fastqc
Directory
m1a-786o-noq-3min-20180413-ju_trimmed.fastq.gz
101.34 MB

m1A_786O_NoQ plus DM-Akg 3min_20180413_JU

STAR
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
21.35 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed.bam
173.88 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_SJ.out.tab
0 B
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_stats.txt
1.79 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed.bam.bai
20.56 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed.bw
106.63 kB
iCount xlsites
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_single.bed.gz
35.07 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_skipped.bam
3.93 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_singleAndMulti.bed.gz
71.69 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_reads_single.bed.gz
41.73 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed_single.bedgraph
230 B
FASTQ file (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-3min-20180413-ju.fastq.gz
87.05 MB
stderr.txt
1.46 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_fastqc.zip
557.49 kB
STAR
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_SJ.out.tab
11.66 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
10.92 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.bam.bai
1.68 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.bam
33.54 MB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.bw
18.48 kB
Paraclu
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single_peaks.bed.gz
1.10 kB
iCount RNA-maps
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single.tar.gz
312.84 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.81 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_fastqc.zip
534.80 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.fastq.gz
21.35 MB
K-mers
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped.tar.gz
158 B
iCount xlsites
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_singleAndMulti.bed.gz
139.60 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single.bed.gz
28.78 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single.bedgraph
98.82 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_reads_single.bed.gz
32.59 kB
iCount summary
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single_summary_type.tsv
455 B
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single_summary_gene.tsv
87.34 kB
m1a-786o-noq-plus-dm-akg-3min-20180413-jufastqgz-3_unmapped_single_summary_subtype.tsv
953 B
Cutadapt (single-end)
fastqc
Directory
m1a-786o-noq-plus-dm-akg-3min-20180413-ju_trimmed.fastq.gz
84.89 MB
report.txt
677 B

m1A_786O_Ctrl 4H_20180413_JU_2

STAR
m1a-786o-ctrl-4h-20180413-ju-2_trimmed.bam
125.41 MB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_unmapped.out.mate1.fastq.gz
16.89 MB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed.bam.bai
20.56 kB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_stats.txt
1.79 kB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_SJ.out.tab
0 B
m1a-786o-ctrl-4h-20180413-ju-2_trimmed.bw
106.60 kB
iCount xlsites
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_skipped.bam
3.93 kB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_single.bed.gz
43.63 kB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_singleAndMulti.bed.gz
82.24 kB
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_single.bedgraph
208 B
m1a-786o-ctrl-4h-20180413-ju-2_trimmed_reads_single.bed.gz
50.74 kB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-ctrl-4h-20180413-ju-2.fastq.gz
67.29 MB
m1a-786o-ctrl-4h-20180413-ju-2_fastqc.zip
551.76 kB
stderr.txt
1.25 kB
STAR
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.80 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
8.89 MB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.bw
18.69 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.bam
27.09 MB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
15.92 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.bam.bai
1.73 MB
iCount reads proxy
fastqc
Directory
stderr.txt
1.60 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
534.67 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.fastq.gz
16.89 MB
iCount summary
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
452 B
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
886 B
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
117.52 kB
Paraclu
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
1.30 kB
iCount RNA-maps
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
327.67 kB
K-mers
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped.tar.gz
151 B
iCount xlsites
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_skipped.bam
2.90 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
35.92 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
179.56 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
40.50 kB
m1a-786o-ctrl-4h-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
124.97 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
m1a-786o-ctrl-4h-20180413-ju-2_trimmed.fastq.gz
65.84 MB

IgG_786O_Mouse IgG_20180413_JU_2

iCount RNA-maps
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single.tar.gz
412.46 kB
STAR
igg-786o-mouse-igg-20180413-ju-2_trimmed_unmapped.out.mate1.fastq.gz
77.45 MB
igg-786o-mouse-igg-20180413-ju-2_trimmed.bam.bai
20.56 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed.bam
320.31 MB
igg-786o-mouse-igg-20180413-ju-2_trimmed_stats.txt
1.79 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed_SJ.out.tab
0 B
iCount reads proxy
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped.fastq.gz
77.45 MB
fastqc
Directory
stderr.txt
1.64 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_fastqc.zip
502.05 kB
iCount xlsites
igg-786o-mouse-igg-20180413-ju-2_trimmed_single.bed.gz
54.34 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed_skipped.bam
3.93 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed_reads_single.bed.gz
68.00 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed_singleAndMulti.bed.gz
104.88 kB
igg-786o-mouse-igg-20180413-ju-2_trimmed_single.bedgraph
212 B
STAR
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_SJ.out.tab
37.85 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_stats.txt
1.81 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_unmapped.out.mate1.fastq.gz
26.48 MB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped.bam
101.98 MB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped.bam.bai
2.07 MB
iCount xlsites
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_singleAndMulti.bed.gz
379.36 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_reads_single.bed.gz
94.38 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_skipped.bam
2.90 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single.bed.gz
79.59 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single.bedgraph
277.86 kB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.28 kB
igg-786o-mouse-igg-20180413-ju-2.fastq.gz
325.62 MB
igg-786o-mouse-igg-20180413-ju-2_fastqc.zip
503.57 kB
iCount summary
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single_summary_type.tsv
469 B
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single_summary_subtype.tsv
1.00 kB
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single_summary_gene.tsv
343.15 kB
Paraclu
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped_single_peaks.bed.gz
656 B
K-mers
igg-786o-mouse-igg-20180413-ju-2fastqgz-3_unmapped.tar.gz
192.58 kB
Cutadapt (single-end)
report.txt
668 B
fastqc
Directory
igg-786o-mouse-igg-20180413-ju-2_trimmed.fastq.gz
315.85 MB

m62A_786O_P2-P5 fraction_input 1500ng sc_spike_in_20180927_JU

STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
401.45 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
3.67 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.63 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
14.40 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.26 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.79 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam
1.29 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam.bai
1.52 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_unmapped.out.mate1.fastq.gz
328.05 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_SJ.out.tab
1.95 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bw
15.78 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
353.49 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.47 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
1.67 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.80 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.30 MB
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
7.00 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
1.04 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
1005 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
2.80 kB
iCount reads proxy
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
557.84 kB
fastqc
Directory
stderr.txt
1.41 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
401.45 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.08 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
328.05 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
564.52 kB
iCount RNA-maps
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
166.25 kB
Paraclu
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
iCount RNA-maps
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
56.00 kB
Paraclu
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
Cutadapt (single-end)
fastqc
Directory
report.txt
706 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
2.20 MB
Cutadapt (single-end)
report.txt
722 B
fastqc
Directory
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.fastq.gz
635.39 kB
iCount summary
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
428 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
708 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
4.07 kB
iCount summary
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
312 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
2.68 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
526 B
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bed.gz
7.17 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_singleAndMulti.bed.gz
43.49 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bedgraph
22.18 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_reads_single.bed.gz
7.69 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
330.01 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
825.27 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.40 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
17.08 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
333 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.38 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
684.71 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
113 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
273.40 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.88 kB
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
1005 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
2.80 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
1.04 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
7.00 kB
iCount summary
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
312 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
2.68 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
526 B
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
634.86 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam
3.15 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
17.82 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bw
104.45 kB
iCount reads proxy
fastqc
Directory
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
553.11 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
634.86 kB
stderr.txt
2.05 kB
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.38 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
684.71 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
273.08 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
113 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.88 kB
iCount RNA-maps
results.tar.gz
56.02 kB
Cutadapt (single-end)
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
634.76 kB
fastqc
Directory
report.txt
745 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
553.45 kB
Paraclu
peaks.bed.gz
35 B
STAR
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
1.29 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
327.66 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
1.52 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.78 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
1.95 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
15.78 kB
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
7.68 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
7.16 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
43.49 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
22.18 kB
iCount reads proxy
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
327.66 kB
fastqc
Directory
stderr.txt
1.08 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
564.52 kB
iCount summary
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
246 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
17.88 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
526 B
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
5.61 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
27.59 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
17.35 kB
iCount xlsites
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
270 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
14.44 kB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
19.32 kB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
2.20 MB
report.txt
727 B
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
530.23 kB
FASTQ file (single-end)
stderr.txt
1.79 kB
fastqc
Directory
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju.fastq.gz
2.22 MB
m62a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_fastqc.zip
527.83 kB
iCount RNA-maps
results.tar.gz
226.97 kB

m6A_786O_Ctrl 4hr_20180106_JU

STAR
m6a-786o-ctrl-4hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-4hr-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-4hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
33.44 MB
m6a-786o-ctrl-4hr-20180106-ju_trimmed.bam
134.03 MB
m6a-786o-ctrl-4hr-20180106-ju_trimmed_SJ.out.tab
0 B
iCount peaks
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
175 B
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_scores.tsv.gz
1.22 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_peaks.bedgraph
345 B
iCount RNA-maps
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single.tar.gz
1017.15 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-ctrl-4hr-20180106-ju.fastq.gz
109.91 MB
m6a-786o-ctrl-4hr-20180106-ju_fastqc.zip
444.81 kB
stderr.txt
1.23 kB
iCount summary
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
472 B
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.29 MB
Paraclu
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
23.60 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-ctrl-4hr-20180106-ju_trimmed.fastq.gz
113.03 MB
report.txt
667 B
iCount reads proxy
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped.fastq.gz
33.44 MB
fastqc
Directory
stderr.txt
1.54 kB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_fastqc.zip
423.21 kB
iCount xlsites
m6a-786o-ctrl-4hr-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-ctrl-4hr-20180106-ju_trimmed_single.bed.gz
78.16 kB
m6a-786o-ctrl-4hr-20180106-ju_trimmed_singleAndMulti.bed.gz
118.74 kB
m6a-786o-ctrl-4hr-20180106-ju_trimmed_reads_single.bed.gz
81.30 kB
m6a-786o-ctrl-4hr-20180106-ju_trimmed_single.bedgraph
206 B
STAR
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped.bam
61.20 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped.bw
33.31 kB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped.bam.bai
3.33 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
7.70 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_SJ.out.tab
663.60 kB
iCount xlsites
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single.bed.gz
1.87 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_single.bedgraph
8.64 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
3.59 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
2.04 MB
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped_skipped.bam
3.07 kB
K-mers
m6a-786o-ctrl-4hr-20180106-jufastqgz_unmapped.tar.gz
358.13 kB

m6A_786O_Ctrl 3min_20180106_JU

Cutadapt (single-end)
fastqc
Directory
report.txt
667 B
m6a-786o-ctrl-3min-20180106-ju_trimmed.fastq.gz
57.22 MB
Paraclu
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
7.66 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-ctrl-3min-20180106-ju_fastqc.zip
462.14 kB
stderr.txt
1.25 kB
m6a-786o-ctrl-3min-20180106-ju.fastq.gz
55.68 MB
iCount summary
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single_summary_type.tsv
468 B
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.10 MB
K-mers
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped.tar.gz
307.21 kB
STAR
m6a-786o-ctrl-3min-20180106-ju_trimmed.bam.bai
20.49 kB
m6a-786o-ctrl-3min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-3min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
15.98 MB
m6a-786o-ctrl-3min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-3min-20180106-ju_trimmed.bam
68.32 MB
iCount reads proxy
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped.fastq.gz
15.98 MB
fastqc
Directory
stderr.txt
1.56 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_fastqc.zip
480.65 kB
iCount xlsites
m6a-786o-ctrl-3min-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-ctrl-3min-20180106-ju_trimmed_singleAndMulti.bed.gz
104.78 kB
m6a-786o-ctrl-3min-20180106-ju_trimmed_reads_single.bed.gz
70.78 kB
m6a-786o-ctrl-3min-20180106-ju_trimmed_single.bedgraph
208 B
m6a-786o-ctrl-3min-20180106-ju_trimmed_single.bed.gz
68.12 kB
STAR
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped.bam.bai
3.10 MB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_SJ.out.tab
303.39 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.17 MB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped.bam
30.30 MB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped.bw
28.04 kB
iCount xlsites
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_skipped.bam
3.30 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single.bed.gz
909.03 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_reads_single.bed.gz
995.24 kB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
1.96 MB
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single.bedgraph
3.91 MB
iCount RNA-maps
m6a-786o-ctrl-3min-20180106-jufastqgz_unmapped_single.tar.gz
738.99 kB

m6A_786O_NoQ 3min_20180106_JU

iCount RNA-maps
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single.tar.gz
772.45 kB
FASTQ file (single-end)
m6a-786o-noq-3min-20180106-ju.fastq.gz
58.62 MB
fastqc
Directory
m6a-786o-noq-3min-20180106-ju_fastqc.zip
507.31 kB
stderr.txt
1.23 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
666 B
m6a-786o-noq-3min-20180106-ju_trimmed.fastq.gz
60.24 MB
STAR
m6a-786o-noq-3min-20180106-ju_trimmed.bam.bai
20.49 kB
m6a-786o-noq-3min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
18.12 MB
m6a-786o-noq-3min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-3min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-3min-20180106-ju_trimmed.bam
72.24 MB
iCount xlsites
m6a-786o-noq-3min-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-3min-20180106-ju_trimmed_single.bed.gz
68.17 kB
m6a-786o-noq-3min-20180106-ju_trimmed_singleAndMulti.bed.gz
105.54 kB
m6a-786o-noq-3min-20180106-ju_trimmed_reads_single.bed.gz
70.90 kB
m6a-786o-noq-3min-20180106-ju_trimmed_single.bedgraph
206 B
iCount reads proxy
m6a-786o-noq-3min-20180106-jufastqgz_unmapped.fastq.gz
18.12 MB
fastqc
Directory
stderr.txt
1.54 kB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_fastqc.zip
479.40 kB
STAR
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_SJ.out.tab
347.48 kB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped.bam.bai
3.25 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped.bam
34.33 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.57 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped.bw
29.95 kB
iCount xlsites
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_skipped.bam
3.41 kB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
2.26 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single.bed.gz
1.02 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single.bedgraph
4.50 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_reads_single.bed.gz
1.11 MB
iCount summary
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.01 kB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.14 MB
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single_summary_type.tsv
468 B
Paraclu
m6a-786o-noq-3min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
9.01 kB
K-mers
m6a-786o-noq-3min-20180106-jufastqgz_unmapped.tar.gz
316.43 kB

m6A_786O_NoQ 15min_20180106_JU

Paraclu
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
164 B
iCount peaks
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_peaks.bed.gz
89 B
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_scores.tsv.gz
19.30 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_peaks.bedgraph
210 B
iCount RNA-maps
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single.tar.gz
360.64 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-15min-20180106-ju.fastq.gz
35.06 MB
stderr.txt
1.25 kB
m6a-786o-noq-15min-20180106-ju_fastqc.zip
521.09 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
m6a-786o-noq-15min-20180106-ju_trimmed.fastq.gz
36.22 MB
STAR
m6a-786o-noq-15min-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
6.76 MB
m6a-786o-noq-15min-20180106-ju_trimmed.bam.bai
19.51 kB
m6a-786o-noq-15min-20180106-ju_trimmed.bam
35.35 MB
m6a-786o-noq-15min-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-15min-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-15min-20180106-ju_trimmed.bw
105.84 kB
iCount xlsites
m6a-786o-noq-15min-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-15min-20180106-ju_trimmed_singleAndMulti.bed.gz
35.09 kB
m6a-786o-noq-15min-20180106-ju_trimmed_single.bed.gz
26.11 kB
m6a-786o-noq-15min-20180106-ju_trimmed_reads_single.bed.gz
31.69 kB
m6a-786o-noq-15min-20180106-ju_trimmed_single.bedgraph
208 B
iCount reads proxy
fastqc
Directory
m6a-786o-noq-15min-20180106-jufastqgz_unmapped.fastq.gz
6.76 MB
stderr.txt
1.56 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_fastqc.zip
531.77 kB
STAR
m6a-786o-noq-15min-20180106-jufastqgz_unmapped.bam
8.43 MB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
1.50 MB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped.bam.bai
1.59 MB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped.bw
18.55 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_SJ.out.tab
8.18 kB
iCount xlsites
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single.bed.gz
26.05 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_skipped.bam
2.90 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single.bedgraph
88.38 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_reads_single.bed.gz
30.91 kB
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
88.41 kB
iCount summary
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_summary_type.tsv
454 B
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1005 B
m6a-786o-noq-15min-20180106-jufastqgz_unmapped_single_summary_gene.tsv
155.26 kB
K-mers
m6a-786o-noq-15min-20180106-jufastqgz_unmapped.tar.gz
148 B

m1A_786O_P6-P9 fraction_input 1500ng sc_spike_in_20180927_JU

iCount RNA-maps
results.tar.gz
275.40 kB
STAR
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
5.75 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
23.61 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
2.36 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
29.15 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
18.71 kB
iCount xlsites
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
268 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
57.43 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
98.50 kB
STAR
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
20.56 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam
131.18 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
10.31 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bw
106.60 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
STAR
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
14.37 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.46 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.61 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.64 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
20.62 kB
Paraclu
peaks.bed.gz
834 B
iCount xlsites
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
32.08 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
109.49 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
33.49 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
170.11 kB
Cutadapt (single-end)
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
10.31 MB
fastqc
Directory
report.txt
744 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
535.63 kB
iCount summary
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
803 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
446 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
87.81 kB
iCount xlsites
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
109.03 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
386.09 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
477.72 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
113.20 kB
iCount reads proxy
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
5.75 MB
fastqc
Directory
stderr.txt
2.14 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
510.07 kB
iCount RNA-maps
results.tar.gz
326.83 kB
iCount summary
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
262 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
195.80 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
594 B
iCount xlsites
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
90.01 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
392.89 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
314.25 kB
STAR
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
25.28 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
5.84 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
2.08 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
39.50 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
20.44 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
727 B
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
62.82 MB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
575.48 kB
FASTQ file (single-end)
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju.fastq.gz
61.01 MB
fastqc
Directory
stderr.txt
1.77 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_fastqc.zip
576.82 kB
iCount reads proxy
fastqc
Directory
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
10.31 MB
stderr.txt
2.14 kB
m1a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
535.28 kB

m62A_786O_40S fraction_input 450ng sc_spike_in_20180927_JU

iCount reads proxy
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
454.61 kB
fastqc
Directory
stderr.txt
1.89 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
609.74 kB
iCount xlsites
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_singleAndMulti.bed.gz
117.97 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bed.gz
7.67 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_reads_single.bed.gz
8.26 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bedgraph
24.13 kB
iCount summary
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
309 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
395 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
1.18 kB
STAR
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.26 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
266.71 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
527.76 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.77 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
256 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.18 kB
FASTQ file (single-end)
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju.fastq.gz
1.20 MB
fastqc
Directory
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_fastqc.zip
556.24 kB
stderr.txt
1.73 kB
Paraclu
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
117 B
iCount RNA-maps
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
62.91 kB
iCount summary
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
356 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
459 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
2.03 kB
iCount RNA-maps
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
63.23 kB
Paraclu
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
117 B
iCount reads proxy
fastqc
Directory
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
291.00 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
591.46 kB
stderr.txt
968 B
Cutadapt (single-end)
fastqc
Directory
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.fastq.gz
561.32 kB
report.txt
719 B
Cutadapt (single-end)
fastqc
Directory
report.txt
703 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
1.16 MB
STAR
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
454.61 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
5.21 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.30 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
1.73 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.55 MB
STAR
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_unmapped.out.mate1.fastq.gz
291.00 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam
1.30 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_SJ.out.tab
1.12 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bw
15.76 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam.bai
1.50 MB
iCount xlsites
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_singleAndMulti.bed.gz
39.74 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bedgraph
14.83 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bed.gz
4.84 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_reads_single.bed.gz
5.22 kB
STAR
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
768.30 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
364 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
419.57 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.18 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.38 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
iCount xlsites
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
914 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
847 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
4.54 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
2.36 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
iCount xlsites
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
3.30 kB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
561 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
524 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
1.42 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
724 B
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
1.16 MB
m62a-786o-40s-fraction-input-450ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
558.73 kB

m6A_786O_NoQ 4hr_20180106_JU

STAR
m6a-786o-noq-4hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-4hr-20180106-ju_trimmed.bam
167.36 MB
m6a-786o-noq-4hr-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-4hr-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-4hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
44.67 MB
iCount summary
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
470 B
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.42 MB
K-mers
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped.tar.gz
382.27 kB
iCount peaks
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
182 B
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_scores.tsv.gz
1.63 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_peaks.bedgraph
342 B
FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-4hr-20180106-ju.fastq.gz
135.66 MB
stderr.txt
1.21 kB
m6a-786o-noq-4hr-20180106-ju_fastqc.zip
439.19 kB
iCount RNA-maps
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single.tar.gz
1.14 MB
Paraclu
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
37.94 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-4hr-20180106-ju_trimmed.fastq.gz
139.65 MB
report.txt
666 B
iCount reads proxy
fastqc
Directory
stderr.txt
1.52 kB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped.fastq.gz
44.67 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_fastqc.zip
422.22 kB
iCount xlsites
m6a-786o-noq-4hr-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-4hr-20180106-ju_trimmed_single.bed.gz
81.29 kB
m6a-786o-noq-4hr-20180106-ju_trimmed_singleAndMulti.bed.gz
125.61 kB
m6a-786o-noq-4hr-20180106-ju_trimmed_single.bedgraph
204 B
m6a-786o-noq-4hr-20180106-ju_trimmed_reads_single.bed.gz
84.33 kB
STAR
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
10.12 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped.bam.bai
3.60 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_SJ.out.tab
858.04 kB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped.bam
80.37 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped.bw
39.04 kB
iCount xlsites
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_skipped.bam
3.40 kB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
4.86 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single.bed.gz
2.53 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
2.76 MB
m6a-786o-noq-4hr-20180106-jufastqgz_unmapped_single.bedgraph
11.85 MB

m6A_786O_NoQ 24hr_20180106_JU

FASTQ file (single-end)
fastqc
Directory
m6a-786o-noq-24hr-20180106-ju.fastq.gz
90.98 MB
stderr.txt
1.23 kB
m6a-786o-noq-24hr-20180106-ju_fastqc.zip
457.47 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-24hr-20180106-ju_trimmed.fastq.gz
93.64 MB
report.txt
667 B
STAR
m6a-786o-noq-24hr-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
26.86 MB
m6a-786o-noq-24hr-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-24hr-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-24hr-20180106-ju_trimmed.bam
112.90 MB
m6a-786o-noq-24hr-20180106-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m6a-786o-noq-24hr-20180106-ju_trimmed_skipped.bam
3.93 kB
m6a-786o-noq-24hr-20180106-ju_trimmed_singleAndMulti.bed.gz
120.36 kB
m6a-786o-noq-24hr-20180106-ju_trimmed_single.bed.gz
78.18 kB
m6a-786o-noq-24hr-20180106-ju_trimmed_reads_single.bed.gz
80.16 kB
m6a-786o-noq-24hr-20180106-ju_trimmed_single.bedgraph
206 B
iCount reads proxy
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped.fastq.gz
26.86 MB
fastqc
Directory
stderr.txt
1.54 kB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_fastqc.zip
479.30 kB
STAR
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
6.30 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped.bam.bai
3.18 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped.bam
51.34 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_SJ.out.tab
673.20 kB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped.bw
33.57 kB
iCount xlsites
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single.bed.gz
1.83 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_singleAndMulti.bed.gz
3.38 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single.bedgraph
8.47 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_reads_single.bed.gz
1.96 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_skipped.bam
3.60 kB
iCount RNA-maps
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single.tar.gz
1012.87 kB
K-mers
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped.tar.gz
362.31 kB
Paraclu
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single_peaks.bed.gz
23.96 kB
iCount summary
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single_summary_gene.tsv
1.27 MB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single_summary_subtype.tsv
1.02 kB
m6a-786o-noq-24hr-20180106-jufastqgz_unmapped_single_summary_type.tsv
474 B

Copy of Input_Control 15min_20180223_JU

iCount xlsites
demux_NNNNGAATANNN_tmp_skipped.bam
9.86 kB
demux_NNNNGAATANNN_tmp_multi.bed.gz
3.29 kB
demux_NNNNGAATANNN_tmp_unique.bed.gz
489 B
STAR
demux_NNNNGAATANNN_tmp.bam
123.15 kB
demux_NNNNGAATANNN_tmp.bam.bai
1.05 MB
demux_NNNNGAATANNN_tmp_SJ.out.tab
110 B
demux_NNNNGAATANNN_tmp_unmapped.out.mate1.fastq.gz
130.77 kB
demux_NNNNGAATANNN_tmp_stats.txt
1.77 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGAATANNN_tmp.fastq.gz
143.52 kB
demux_NNNNGAATANNN_tmp_fastqc.zip
609.39 kB
stderr.txt
473 B

Copy of Input_NoQ_2_4hrs_20180223_JU

iCount summary
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_type.tsv
260 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
627 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
307.41 kB
iCount xlsites
demux_NNNNGCTTGCTGNNNNN_unique.bed.gz
123.40 kB
demux_NNNNGCTTGCTGNNNNN_skipped.bam
431.43 kB
demux_NNNNGCTTGCTGNNNNN_multi.bed.gz
1.08 MB
demux_NNNNGCTTGCTGNNNNN_unique.bedgraph
441.64 kB
STAR
demux_NNNNGCTTGCTGNNNNN_unmapped.out.mate1.fastq.gz
5.73 MB
demux_NNNNGCTTGCTGNNNNN.bam.bai
2.62 MB
demux_NNNNGCTTGCTGNNNNN_SJ.out.tab
48.32 kB
demux_NNNNGCTTGCTGNNNNN.bam
106.79 MB
demux_NNNNGCTTGCTGNNNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCTGNNNNN.fastq.gz
17.80 MB
demux_NNNNGCTTGCTGNNNNN_fastqc.zip
428.33 kB
stderr.txt
1.05 kB

Copy of Input_Control-for-NoMet 15min_20180223_JU

iCount summary
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
440.99 kB
iCount xlsites
demux_NNNNATCTGATTNNNNN_skipped.bam
812.06 kB
demux_NNNNATCTGATTNNNNN_multi.bed.gz
1.56 MB
demux_NNNNATCTGATTNNNNN_unique.bed.gz
207.55 kB
demux_NNNNATCTGATTNNNNN_unique.bedgraph
763.84 kB
STAR
demux_NNNNATCTGATTNNNNN_unmapped.out.mate1.fastq.gz
19.24 MB
demux_NNNNATCTGATTNNNNN.bam
218.11 MB
demux_NNNNATCTGATTNNNNN.bam.bai
3.10 MB
demux_NNNNATCTGATTNNNNN_SJ.out.tab
81.04 kB
demux_NNNNATCTGATTNNNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCTGATTNNNNN.fastq.gz
42.25 MB
stderr.txt
1.05 kB
demux_NNNNATCTGATTNNNNN_fastqc.zip
395.65 kB

Copy of Input_NoQ 3min_20180223_JU

iCount summary
demux_NNNNCCGGANNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_gene.tsv
485.57 kB
iCount xlsites
demux_NNNNCCGGANNN_skipped.bam
1.38 MB
demux_NNNNCCGGANNN_multi.bed.gz
1.45 MB
demux_NNNNCCGGANNN_unique.bed.gz
226.33 kB
demux_NNNNCCGGANNN_unique.bedgraph
844.75 kB
STAR
demux_NNNNCCGGANNN_unmapped.out.mate1.fastq.gz
42.49 MB
demux_NNNNCCGGANNN.bam.bai
3.04 MB
demux_NNNNCCGGANNN.bam
662.73 MB
demux_NNNNCCGGANNN_stats.txt
1.81 kB
demux_NNNNCCGGANNN_SJ.out.tab
81.53 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCCGGANNN.fastq.gz
113.02 MB
stderr.txt
1.00 kB
demux_NNNNCCGGANNN_fastqc.zip
452.96 kB

Copy of Input_NoQ_2_plus DM-Akg 4hrs_20180223_JU

iCount summary
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_subtype.tsv
628 B
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_gene.tsv
317.16 kB
iCount xlsites
demux_NNNNGCTTGCGTNNNNN_multi.bed.gz
1.11 MB
demux_NNNNGCTTGCGTNNNNN_unique.bedgraph
465.20 kB
demux_NNNNGCTTGCGTNNNNN_skipped.bam
403.35 kB
demux_NNNNGCTTGCGTNNNNN_unique.bed.gz
129.87 kB
STAR
demux_NNNNGCTTGCGTNNNNN_unmapped.out.mate1.fastq.gz
5.94 MB
demux_NNNNGCTTGCGTNNNNN.bam
105.45 MB
demux_NNNNGCTTGCGTNNNNN.bam.bai
2.69 MB
demux_NNNNGCTTGCGTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGCGTNNNNN_SJ.out.tab
45.41 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCGTNNNNN.fastq.gz
17.94 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGCGTNNNNN_fastqc.zip
404.33 kB

Copy of Input_NoQ plus DM-Akg 3min_20180223_JU

STAR
demux_NNNNAGGCANNN_tmp_unmapped.out.mate1.fastq.gz
82.90 kB
demux_NNNNAGGCANNN_tmp.bam.bai
1.21 MB
demux_NNNNAGGCANNN_tmp.bam
130.96 kB
demux_NNNNAGGCANNN_tmp_stats.txt
1.77 kB
demux_NNNNAGGCANNN_tmp_SJ.out.tab
145 B
Reads (single-end)
fastqc
Directory
stderr.txt
261 B
demux_NNNNAGGCANNN_tmp.fastq.gz
95.76 kB
demux_NNNNAGGCANNN_tmp_fastqc.zip
541.61 kB
iCount xlsites
demux_NNNNAGGCANNN_tmp_unique.bed.gz
436 B
demux_NNNNAGGCANNN_tmp_multi.bed.gz
4.77 kB
demux_NNNNAGGCANNN_tmp_skipped.bam
10.62 kB

Copy of Input_NoQ plus DM-Akg 24hrs_20180223_JU

iCount summary
demux_NNNNAGACTNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNAGACTNNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNAGACTNNN_unique_summary.tsv_summary_gene.tsv
412.50 kB
iCount xlsites
demux_NNNNAGACTNNN_skipped.bam
329.88 kB
demux_NNNNAGACTNNN_unique.bed.gz
175.65 kB
demux_NNNNAGACTNNN_unique.bedgraph
665.38 kB
demux_NNNNAGACTNNN_multi.bed.gz
1.16 MB
STAR
demux_NNNNAGACTNNN_stats.txt
1.80 kB
demux_NNNNAGACTNNN.bam.bai
2.56 MB
demux_NNNNAGACTNNN.bam
148.09 MB
demux_NNNNAGACTNNN_SJ.out.tab
68.88 kB
demux_NNNNAGACTNNN_unmapped.out.mate1.fastq.gz
9.60 MB
Reads (single-end)
demux_NNNNAGACTNNN.fastq.gz
23.49 MB
fastqc
Directory
demux_NNNNAGACTNNN_fastqc.zip
454.58 kB
stderr.txt
975 B

Copy of Input_NoQ 4hrs_20180223_JU

iCount xlsites
demux_NNNNGTATTNNN_tmp_multi.bed.gz
28.33 kB
demux_NNNNGTATTNNN_tmp_unique.bed.gz
2.44 kB
demux_NNNNGTATTNNN_tmp_skipped.bam
35.32 kB
STAR
demux_NNNNGTATTNNN_tmp.bam.bai
1.41 MB
demux_NNNNGTATTNNN_tmp_unmapped.out.mate1.fastq.gz
742.75 kB
demux_NNNNGTATTNNN_tmp_stats.txt
1.78 kB
demux_NNNNGTATTNNN_tmp.bam
746.65 kB
demux_NNNNGTATTNNN_tmp_SJ.out.tab
2.22 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGTATTNNN_tmp_fastqc.zip
563.78 kB
demux_NNNNGTATTNNN_tmp.fastq.gz
866.39 kB
stderr.txt
1.03 kB

Copy of Input_Control 24hrs_20180223_JU

iCount summary
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_gene.tsv
616.69 kB
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_subtype.tsv
638 B
iCount xlsites
demux_NNNNCAAGTNNN_unique.bedgraph
1.36 MB
demux_NNNNCAAGTNNN_skipped.bam
730.92 kB
demux_NNNNCAAGTNNN_unique.bed.gz
358.57 kB
demux_NNNNCAAGTNNN_multi.bed.gz
2.00 MB
STAR
demux_NNNNCAAGTNNN_unmapped.out.mate1.fastq.gz
16.75 MB
demux_NNNNCAAGTNNN.bam.bai
3.41 MB
demux_NNNNCAAGTNNN_SJ.out.tab
136.92 kB
demux_NNNNCAAGTNNN_stats.txt
1.80 kB
demux_NNNNCAAGTNNN.bam
287.13 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCAAGTNNN.fastq.gz
43.43 MB
stderr.txt
975 B
demux_NNNNCAAGTNNN_fastqc.zip
473.05 kB

Copy of Input_NoQ 24hrs_20180223_JU

iCount summary
demux_NNNNGCTCTNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTCTNNN_unique_summary.tsv_summary_gene.tsv
490.42 kB
demux_NNNNGCTCTNNN_unique_summary.tsv_summary_type.tsv
261 B
iCount xlsites
demux_NNNNGCTCTNNN_skipped.bam
477.77 kB
demux_NNNNGCTCTNNN_unique.bed.gz
238.04 kB
demux_NNNNGCTCTNNN_unique.bedgraph
905.37 kB
demux_NNNNGCTCTNNN_multi.bed.gz
1.48 MB
STAR
demux_NNNNGCTCTNNN.bam.bai
3.03 MB
demux_NNNNGCTCTNNN_stats.txt
1.80 kB
demux_NNNNGCTCTNNN_unmapped.out.mate1.fastq.gz
10.99 MB
demux_NNNNGCTCTNNN_SJ.out.tab
89.62 kB
demux_NNNNGCTCTNNN.bam
177.48 MB
Reads (single-end)
demux_NNNNGCTCTNNN.fastq.gz
27.68 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNGCTCTNNN_fastqc.zip
478.56 kB

Copy of Input_NoQ plus DM-Akg 3min_20180223_JU

iCount summary
demux_NNNNAGGCANNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNAGGCANNN_unique_summary.tsv_summary_gene.tsv
453.03 kB
iCount xlsites
demux_NNNNAGGCANNN_skipped.bam
1.31 MB
demux_NNNNAGGCANNN_unique.bed.gz
205.56 kB
demux_NNNNAGGCANNN_multi.bed.gz
1.36 MB
demux_NNNNAGGCANNN_unique.bedgraph
764.73 kB
STAR
demux_NNNNAGGCANNN_unmapped.out.mate1.fastq.gz
41.80 MB
demux_NNNNAGGCANNN_stats.txt
1.81 kB
demux_NNNNAGGCANNN.bam.bai
2.92 MB
demux_NNNNAGGCANNN_SJ.out.tab
72.41 kB
demux_NNNNAGGCANNN.bam
604.26 MB
Reads (single-end)
fastqc
Directory
demux_NNNNAGGCANNN.fastq.gz
106.78 MB
stderr.txt
975 B
demux_NNNNAGGCANNN_fastqc.zip
478.65 kB

Copy of Input_NoQ 4hrs_20180223_JU

iCount summary
demux_NNNNGTATTNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNGTATTNNN_unique_summary.tsv_summary_gene.tsv
655.96 kB
demux_NNNNGTATTNNN_unique_summary.tsv_summary_subtype.tsv
636 B
iCount xlsites
demux_NNNNGTATTNNN_unique.bedgraph
1.50 MB
demux_NNNNGTATTNNN_skipped.bam
685.04 kB
demux_NNNNGTATTNNN_unique.bed.gz
396.75 kB
demux_NNNNGTATTNNN_multi.bed.gz
2.37 MB
STAR
demux_NNNNGTATTNNN_unmapped.out.mate1.fastq.gz
46.63 MB
demux_NNNNGTATTNNN.bam.bai
3.76 MB
demux_NNNNGTATTNNN_stats.txt
1.80 kB
demux_NNNNGTATTNNN_SJ.out.tab
139.64 kB
demux_NNNNGTATTNNN.bam
311.11 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGTATTNNN.fastq.gz
71.46 MB
demux_NNNNGTATTNNN_fastqc.zip
535.67 kB
stderr.txt
975 B

Copy of Input_Control_2_15min_20180223_JU

iCount summary
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
390.73 kB
iCount xlsites
demux_NNNNGCTTGATTNNNNN_skipped.bam
673.14 kB
demux_NNNNGCTTGATTNNNNN_multi.bed.gz
1.35 MB
demux_NNNNGCTTGATTNNNNN_unique.bedgraph
614.81 kB
demux_NNNNGCTTGATTNNNNN_unique.bed.gz
168.98 kB
STAR
demux_NNNNGCTTGATTNNNNN_unmapped.out.mate1.fastq.gz
18.36 MB
demux_NNNNGCTTGATTNNNNN.bam.bai
2.91 MB
demux_NNNNGCTTGATTNNNNN.bam
186.28 MB
demux_NNNNGCTTGATTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGATTNNNNN_SJ.out.tab
65.83 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGATTNNNNN.fastq.gz
37.65 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGATTNNNNN_fastqc.zip
401.13 kB

Copy of Input_Control-for-NoMet 4hrs_20180223_JU

iCount summary
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_gene.tsv
366.58 kB
demux_NNNNATCTGTTANNNNN_unique_summary.tsv_summary_type.tsv
261 B
iCount xlsites
demux_NNNNATCTGTTANNNNN_skipped.bam
555.07 kB
demux_NNNNATCTGTTANNNNN_unique.bed.gz
152.79 kB
demux_NNNNATCTGTTANNNNN_unique.bedgraph
553.79 kB
demux_NNNNATCTGTTANNNNN_multi.bed.gz
1.24 MB
STAR
demux_NNNNATCTGTTANNNNN_unmapped.out.mate1.fastq.gz
19.28 MB
demux_NNNNATCTGTTANNNNN.bam
162.52 MB
demux_NNNNATCTGTTANNNNN.bam.bai
2.80 MB
demux_NNNNATCTGTTANNNNN_SJ.out.tab
60.30 kB
demux_NNNNATCTGTTANNNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCTGTTANNNNN.fastq.gz
35.66 MB
stderr.txt
1.05 kB
demux_NNNNATCTGTTANNNNN_fastqc.zip
384.24 kB

m62a-786o-ctrl-15min-20180413-ju.fastq.gz

iCount reads proxy
fastqc
Directory
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_fastqc.zip
499.81 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped.fastq.gz
203.77 MB
stderr.txt
1.64 kB
iCount RNA-maps
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single.tar.gz
498.06 kB
Paraclu
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
6.79 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
m62a-786o-ctrl-15min-20180413-ju_trimmed.fastq.gz
513.67 MB
STAR
m62a-786o-ctrl-15min-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-ctrl-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
203.77 MB
m62a-786o-ctrl-15min-20180413-ju_trimmed.bam
772.93 MB
m62a-786o-ctrl-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_SJ.out.tab
0 B
iCount xlsites
m62a-786o-ctrl-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
119.18 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_single.bed.gz
83.71 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_reads_single.bed.gz
98.53 kB
m62a-786o-ctrl-15min-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-ctrl-15min-20180413-ju_trimmed_single.bedgraph
230 B
STAR
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
79.98 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped.bam.bai
3.56 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_stats.txt
1.82 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped.bam
642.55 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_SJ.out.tab
193.56 kB
iCount xlsites
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_skipped.bam
5.90 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single.bed.gz
380.71 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.73 MB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
448.20 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single.bedgraph
1.45 MB
iCount summary
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
907.56 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.02 kB
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
475 B
FASTQ file (single-end)
fastqc
Directory
m62a-786o-ctrl-15min-20180413-ju_fastqc.zip
511.90 kB
stderr.txt
1.23 kB
m62a-786o-ctrl-15min-20180413-ju.fastq.gz
530.35 MB
K-mers
m62a-786o-ctrl-15min-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
1.08 kB

m62a-786o-noq-15min-20180413-ju.fastq.gz

iCount summary
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
470 B
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
866.27 kB
K-mers
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
1.10 kB
Cutadapt (single-end)
report.txt
667 B
fastqc
Directory
m62a-786o-noq-15min-20180413-ju_trimmed.fastq.gz
452.83 MB
iCount xlsites
m62a-786o-noq-15min-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-noq-15min-20180413-ju_trimmed_reads_single.bed.gz
89.88 kB
m62a-786o-noq-15min-20180413-ju_trimmed_single.bed.gz
76.99 kB
m62a-786o-noq-15min-20180413-ju_trimmed_singleAndMulti.bed.gz
106.35 kB
m62a-786o-noq-15min-20180413-ju_trimmed_single.bedgraph
228 B
STAR
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped.bam
513.49 MB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped.bam.bai
3.22 MB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_SJ.out.tab
187.52 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
62.75 MB
iCount xlsites
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single.bed.gz
350.34 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_skipped.bam
3.51 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.42 MB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
416.90 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single.bedgraph
1.34 MB
iCount RNA-maps
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single.tar.gz
510.41 kB
Paraclu
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
5.78 kB
STAR
m62a-786o-noq-15min-20180413-ju_trimmed.bam
671.63 MB
m62a-786o-noq-15min-20180413-ju_trimmed_stats.txt
1.79 kB
m62a-786o-noq-15min-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-noq-15min-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
168.81 MB
m62a-786o-noq-15min-20180413-ju_trimmed_SJ.out.tab
0 B
iCount reads proxy
fastqc
Directory
stderr.txt
1.62 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped_fastqc.zip
497.06 kB
m62a-786o-noq-15min-20180413-jufastqgz-2_unmapped.fastq.gz
168.81 MB
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.21 kB
m62a-786o-noq-15min-20180413-ju_fastqc.zip
519.78 kB
m62a-786o-noq-15min-20180413-ju.fastq.gz
462.69 MB

m62a-786o-noq-4h-20180413-ju.fastq.gz

iCount reads proxy
fastqc
Directory
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped.fastq.gz
133.12 MB
stderr.txt
1.56 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_fastqc.zip
506.88 kB
iCount RNA-maps
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single.tar.gz
458.18 kB
Paraclu
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_peaks.bed.gz
5.24 kB
K-mers
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_peaks.tar.gz
939 B
Cutadapt (single-end)
fastqc
Directory
report.txt
665 B
m62a-786o-noq-4h-20180413-ju_trimmed.fastq.gz
305.93 MB
STAR
m62a-786o-noq-4h-20180413-ju_trimmed.bam.bai
336 B
m62a-786o-noq-4h-20180413-ju_trimmed_unmapped.out.mate1.fastq.gz
133.12 MB
m62a-786o-noq-4h-20180413-ju_trimmed_stats.txt
1.78 kB
m62a-786o-noq-4h-20180413-ju_trimmed_SJ.out.tab
0 B
m62a-786o-noq-4h-20180413-ju_trimmed.bam
459.83 MB
iCount xlsites
m62a-786o-noq-4h-20180413-ju_trimmed_skipped.bam
553 B
m62a-786o-noq-4h-20180413-ju_trimmed_singleAndMulti.bed.gz
105.74 kB
m62a-786o-noq-4h-20180413-ju_trimmed_single.bedgraph
222 B
m62a-786o-noq-4h-20180413-ju_trimmed_single.bed.gz
75.43 kB
m62a-786o-noq-4h-20180413-ju_trimmed_reads_single.bed.gz
88.21 kB
iCount xlsites
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_singleAndMulti.bed.gz
1.25 MB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single.bed.gz
256.32 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single.bedgraph
979.46 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_skipped.bam
5.15 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_reads_single.bed.gz
300.23 kB
iCount summary
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_summary_type.tsv
467 B
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_summary_subtype.tsv
1.01 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_single_summary_gene.tsv
730.41 kB
STAR
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped.bam.bai
3.13 MB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_stats.txt
1.81 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_unmapped.out.mate1.fastq.gz
52.84 MB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped_SJ.out.tab
124.37 kB
m62a-786o-noq-4h-20180413-jufastqgz-2_unmapped.bam
414.28 MB
FASTQ file (single-end)
m62a-786o-noq-4h-20180413-ju.fastq.gz
317.46 MB
fastqc
Directory
stderr.txt
1.15 kB
m62a-786o-noq-4h-20180413-ju_fastqc.zip
515.65 kB

Copy of IgG_Rabbit IgG_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNATACGNNN.fastq.gz
248.95 kB
stderr.txt
534 B
demux_NNNNATACGNNN_fastqc.zip
439.29 kB
iCount xlsites
demux_NNNNATACGNNN_skipped.bam
22.04 kB
demux_NNNNATACGNNN_unique.bed.gz
6.88 kB
demux_NNNNATACGNNN_multi.bed.gz
98.85 kB
STAR
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
44.48 kB
demux_NNNNATACGNNN.bam
1.55 MB
demux_NNNNATACGNNN_stats.txt
1.78 kB
demux_NNNNATACGNNN_SJ.out.tab
2.61 kB
demux_NNNNATACGNNN.bam.bai
1.62 MB

Copy of Input_NoQ 15min_20180223_JU

iCount summary
demux_NNNNTTTAANNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNTTTAANNN_unique_summary.tsv_summary_gene.tsv
549.88 kB
demux_NNNNTTTAANNN_unique_summary.tsv_summary_type.tsv
264 B
iCount xlsites
demux_NNNNTTTAANNN_skipped.bam
780.42 kB
demux_NNNNTTTAANNN_unique.bedgraph
1.08 MB
demux_NNNNTTTAANNN_multi.bed.gz
1.85 MB
demux_NNNNTTTAANNN_unique.bed.gz
289.77 kB
STAR
demux_NNNNTTTAANNN.bam.bai
3.38 MB
demux_NNNNTTTAANNN.bam
219.39 MB
demux_NNNNTTTAANNN_stats.txt
1.80 kB
demux_NNNNTTTAANNN_SJ.out.tab
103.32 kB
demux_NNNNTTTAANNN_unmapped.out.mate1.fastq.gz
19.04 MB
Reads (single-end)
demux_NNNNTTTAANNN.fastq.gz
38.94 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNTTTAANNN_fastqc.zip
487.17 kB

Copy of Input_NoQ_2_plus DM-Akg 15min_20180223_JU

iCount summary
demux_NNNNGCTTGTTANNNNN_unique_summary.tsv_summary_gene.tsv
322.59 kB
demux_NNNNGCTTGTTANNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNGCTTGTTANNNNN_unique_summary.tsv_summary_type.tsv
262 B
iCount xlsites
demux_NNNNGCTTGTTANNNNN_unique.bedgraph
476.01 kB
demux_NNNNGCTTGTTANNNNN_unique.bed.gz
132.66 kB
demux_NNNNGCTTGTTANNNNN_multi.bed.gz
1.11 MB
demux_NNNNGCTTGTTANNNNN_skipped.bam
523.21 kB
STAR
demux_NNNNGCTTGTTANNNNN_unmapped.out.mate1.fastq.gz
19.98 MB
demux_NNNNGCTTGTTANNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGTTANNNNN.bam
142.39 MB
demux_NNNNGCTTGTTANNNNN_SJ.out.tab
48.59 kB
demux_NNNNGCTTGTTANNNNN.bam.bai
2.67 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGTTANNNNN.fastq.gz
34.05 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGTTANNNNN_fastqc.zip
396.18 kB

Copy of Input_Control_2_4hrs_20180223_JU

iCount summary
demux_NNNNGCTTGTGCNNNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNGCTTGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
320.00 kB
demux_NNNNGCTTGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
628 B
iCount xlsites
demux_NNNNGCTTGTGCNNNNN_skipped.bam
471.63 kB
demux_NNNNGCTTGTGCNNNNN_unique.bedgraph
459.79 kB
demux_NNNNGCTTGTGCNNNNN_unique.bed.gz
127.98 kB
demux_NNNNGCTTGTGCNNNNN_multi.bed.gz
1.08 MB
STAR
demux_NNNNGCTTGTGCNNNNN_unmapped.out.mate1.fastq.gz
6.76 MB
demux_NNNNGCTTGTGCNNNNN.bam.bai
2.62 MB
demux_NNNNGCTTGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGTGCNNNNN.bam
126.27 MB
demux_NNNNGCTTGTGCNNNNN_SJ.out.tab
45.87 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNGCTTGTGCNNNNN_fastqc.zip
412.01 kB
demux_NNNNGCTTGTGCNNNNN.fastq.gz
20.98 MB

Copy of IgG_Rabbit IgG_20180223_JU

iCount summary
demux_NNNNATACGNNN_unique_summary.tsv_summary_subtype.tsv
623 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_gene.tsv
146.96 kB
demux_NNNNATACGNNN_unique_summary.tsv_summary_type.tsv
258 B
iCount xlsites
demux_NNNNATACGNNN_unique.bed.gz
50.16 kB
demux_NNNNATACGNNN_skipped.bam
276.63 kB
demux_NNNNATACGNNN_unique.bedgraph
174.38 kB
demux_NNNNATACGNNN_multi.bed.gz
493.05 kB
STAR
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
3.92 MB
demux_NNNNATACGNNN.bam
61.97 MB
demux_NNNNATACGNNN_SJ.out.tab
19.86 kB
demux_NNNNATACGNNN.bam.bai
1.92 MB
demux_NNNNATACGNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATACGNNN.fastq.gz
11.61 MB
demux_NNNNATACGNNN_fastqc.zip
459.30 kB
stderr.txt
975 B

Copy of Input_Control 4hrs_20180223_JU

iCount xlsites
demux_NNNNACCTTNNN_skipped.bam
637.25 kB
demux_NNNNACCTTNNN_unique.bed.gz
269.67 kB
demux_NNNNACCTTNNN_unique.bedgraph
1022.41 kB
demux_NNNNACCTTNNN_multi.bed.gz
1.79 MB
STAR
demux_NNNNACCTTNNN_unmapped.out.mate1.fastq.gz
25.79 MB
demux_NNNNACCTTNNN_stats.txt
1.80 kB
demux_NNNNACCTTNNN.bam.bai
3.32 MB
demux_NNNNACCTTNNN_SJ.out.tab
100.16 kB
demux_NNNNACCTTNNN.bam
212.84 MB
Reads (single-end)
fastqc
Directory
demux_NNNNACCTTNNN.fastq.gz
44.09 MB
stderr.txt
975 B
demux_NNNNACCTTNNN_fastqc.zip
504.25 kB
iCount summary
demux_NNNNACCTTNNN_unique_summary.tsv_summary_gene.tsv
535.88 kB
demux_NNNNACCTTNNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNACCTTNNN_unique_summary.tsv_summary_type.tsv
265 B

Copy of Input_NoQ plus DM-Akg 15min_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNCATTTNNN.fastq.gz
27.81 MB
demux_NNNNCATTTNNN_fastqc.zip
470.22 kB
stderr.txt
975 B
iCount summary
demux_NNNNCATTTNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNCATTTNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNCATTTNNN_unique_summary.tsv_summary_gene.tsv
442.50 kB
iCount xlsites
demux_NNNNCATTTNNN_unique.bed.gz
201.52 kB
demux_NNNNCATTTNNN_skipped.bam
427.16 kB
demux_NNNNCATTTNNN_multi.bed.gz
1.38 MB
demux_NNNNCATTTNNN_unique.bedgraph
756.35 kB
STAR
demux_NNNNCATTTNNN_unmapped.out.mate1.fastq.gz
13.95 MB
demux_NNNNCATTTNNN.bam.bai
2.92 MB
demux_NNNNCATTTNNN.bam
153.29 MB
demux_NNNNCATTTNNN_stats.txt
1.80 kB
demux_NNNNCATTTNNN_SJ.out.tab
69.02 kB

Copy of Input_Control 3min_20180223_JU

iCount summary
demux_NNNNTCCACNNN_unique_summary.tsv_summary_gene.tsv
371.57 kB
demux_NNNNTCCACNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNTCCACNNN_unique_summary.tsv_summary_type.tsv
261 B
iCount xlsites
demux_NNNNTCCACNNN_unique.bed.gz
152.19 kB
demux_NNNNTCCACNNN_skipped.bam
745.45 kB
demux_NNNNTCCACNNN_unique.bedgraph
551.29 kB
demux_NNNNTCCACNNN_multi.bed.gz
1.13 MB
STAR
demux_NNNNTCCACNNN.bam
385.14 MB
demux_NNNNTCCACNNN_unmapped.out.mate1.fastq.gz
30.15 MB
demux_NNNNTCCACNNN.bam.bai
2.76 MB
demux_NNNNTCCACNNN_stats.txt
1.80 kB
demux_NNNNTCCACNNN_SJ.out.tab
53.91 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCCACNNN.fastq.gz
71.14 MB
stderr.txt
975 B
demux_NNNNTCCACNNN_fastqc.zip
469.93 kB

Copy of Input_Control-for-NoMet 4hrs_20180223_JU

iCount xlsites
demux_NNNNATCTGTTANNNNN_tmp_skipped.bam
9.08 kB
demux_NNNNATCTGTTANNNNN_tmp_multi.bed.gz
912 B
demux_NNNNATCTGTTANNNNN_tmp_unique.bed.gz
199 B
STAR
demux_NNNNATCTGTTANNNNN_tmp.bam.bai
919.28 kB
demux_NNNNATCTGTTANNNNN_tmp.bam
25.03 kB
demux_NNNNATCTGTTANNNNN_tmp_SJ.out.tab
144 B
demux_NNNNATCTGTTANNNNN_tmp_unmapped.out.mate1.fastq.gz
24.47 kB
demux_NNNNATCTGTTANNNNN_tmp_stats.txt
1.77 kB
Reads (single-end)
demux_NNNNATCTGTTANNNNN_tmp_fastqc.zip
753.64 kB
fastqc
Directory
demux_NNNNATCTGTTANNNNN_tmp.fastq.gz
30.37 kB
stderr.txt
112 B

Copy of Input_NoMet 4hrs_20180223_JU

iCount xlsites
demux_NNNNATCTGTGCNNNNN_tmp_unique.bed.gz
121 B
demux_NNNNATCTGTGCNNNNN_tmp_multi.bed.gz
167 B
demux_NNNNATCTGTGCNNNNN_tmp_skipped.bam
8.25 kB
STAR
demux_NNNNATCTGTGCNNNNN_tmp_unmapped.out.mate1.fastq.gz
4.44 kB
demux_NNNNATCTGTGCNNNNN_tmp.bam.bai
275.64 kB
demux_NNNNATCTGTGCNNNNN_tmp.bam
10.09 kB
demux_NNNNATCTGTGCNNNNN_tmp_SJ.out.tab
0 B
demux_NNNNATCTGTGCNNNNN_tmp_stats.txt
1.77 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCTGTGCNNNNN_tmp.fastq.gz
4.73 kB
stderr.txt
54 B
demux_NNNNATCTGTGCNNNNN_tmp_fastqc.zip
834.69 kB

Copy of Input_NoQ_2_15min_20180223_JU

iCount summary
demux_NNNNGCTTGAGGNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
625 B
demux_NNNNGCTTGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
338.64 kB
iCount xlsites
demux_NNNNGCTTGAGGNNNNN_multi.bed.gz
1.15 MB
demux_NNNNGCTTGAGGNNNNN_skipped.bam
495.08 kB
demux_NNNNGCTTGAGGNNNNN_unique.bed.gz
139.12 kB
demux_NNNNGCTTGAGGNNNNN_unique.bedgraph
500.14 kB
STAR
demux_NNNNGCTTGAGGNNNNN.bam.bai
2.71 MB
demux_NNNNGCTTGAGGNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGAGGNNNNN_unmapped.out.mate1.fastq.gz
6.82 MB
demux_NNNNGCTTGAGGNNNNN.bam
126.51 MB
demux_NNNNGCTTGAGGNNNNN_SJ.out.tab
50.64 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGAGGNNNNN.fastq.gz
21.29 MB
demux_NNNNGCTTGAGGNNNNN_fastqc.zip
398.51 kB
stderr.txt
1.05 kB

Copy of Input_NoMet 15min_20180223_JU

iCount summary
demux_NNNNATCTGAGGNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNATCTGAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNATCTGAGGNNNNN_unique_summary.tsv_summary_gene.tsv
425.19 kB
iCount xlsites
demux_NNNNATCTGAGGNNNNN_multi.bed.gz
1.48 MB
demux_NNNNATCTGAGGNNNNN_unique.bedgraph
705.57 kB
demux_NNNNATCTGAGGNNNNN_unique.bed.gz
192.76 kB
demux_NNNNATCTGAGGNNNNN_skipped.bam
646.92 kB
STAR
demux_NNNNATCTGAGGNNNNN.bam.bai
3.03 MB
demux_NNNNATCTGAGGNNNNN_unmapped.out.mate1.fastq.gz
9.01 MB
demux_NNNNATCTGAGGNNNNN.bam
179.75 MB
demux_NNNNATCTGAGGNNNNN_SJ.out.tab
71.96 kB
demux_NNNNATCTGAGGNNNNN_stats.txt
1.80 kB
Reads (single-end)
demux_NNNNATCTGAGGNNNNN.fastq.gz
29.17 MB
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATCTGAGGNNNNN_fastqc.zip
401.29 kB

Copy of Input_NoQ plus DM-Akg 4hrs_20180223_JU

iCount summary
demux_NNNNTGCGTNNN_unique_summary.tsv_summary_gene.tsv
566.50 kB
demux_NNNNTGCGTNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNTGCGTNNN_unique_summary.tsv_summary_subtype.tsv
635 B
iCount xlsites
demux_NNNNTGCGTNNN_multi.bed.gz
1.92 MB
demux_NNNNTGCGTNNN_skipped.bam
555.67 kB
demux_NNNNTGCGTNNN_unique.bed.gz
310.24 kB
demux_NNNNTGCGTNNN_unique.bedgraph
1.16 MB
STAR
demux_NNNNTGCGTNNN.bam.bai
3.42 MB
demux_NNNNTGCGTNNN_unmapped.out.mate1.fastq.gz
24.27 MB
demux_NNNNTGCGTNNN_SJ.out.tab
114.50 kB
demux_NNNNTGCGTNNN.bam
229.59 MB
demux_NNNNTGCGTNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGCGTNNN.fastq.gz
44.28 MB
stderr.txt
975 B
demux_NNNNTGCGTNNN_fastqc.zip
497.73 kB

m1A_786O__20180420_JU

iCount xlsites
demux_NNNNGTAGANNN_skipped.bam
9.77 MB
demux_NNNNGTAGANNN_multi.bed.gz
2.82 MB
demux_NNNNGTAGANNN_unique.bedgraph
2.68 MB
demux_NNNNGTAGANNN_unique.bed.gz
682.01 kB
STAR
demux_NNNNGTAGANNN_stats.txt
1.82 kB
demux_NNNNGTAGANNN.bam.bai
3.66 MB
demux_NNNNGTAGANNN.bam
1.90 GB
demux_NNNNGTAGANNN_SJ.out.tab
379.90 kB
demux_NNNNGTAGANNN_unmapped.out.mate1.fastq.gz
184.25 MB
Reads (single-end)
demux_NNNNGTAGANNN.fastq.gz
428.44 MB
stderr.txt
975 B
fastqc
Directory
demux_NNNNGTAGANNN_fastqc.zip
461.25 kB
iCount summary
demux_NNNNGTAGANNN_unique_summary.tsv_summary_subtype.tsv
645 B
demux_NNNNGTAGANNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNGTAGANNN_unique_summary.tsv_summary_gene.tsv
803.19 kB

Copy of Input_NoMet 4hrs_20180223_JU

iCount summary
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
366.63 kB
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_type.tsv
260 B
iCount xlsites
demux_NNNNATCTGTGCNNNNN_unique.bed.gz
152.24 kB
demux_NNNNATCTGTGCNNNNN_multi.bed.gz
1.19 MB
demux_NNNNATCTGTGCNNNNN_unique.bedgraph
555.38 kB
demux_NNNNATCTGTGCNNNNN_skipped.bam
572.14 kB
STAR
demux_NNNNATCTGTGCNNNNN.bam
147.01 MB
demux_NNNNATCTGTGCNNNNN.bam.bai
2.72 MB
demux_NNNNATCTGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGTGCNNNNN_SJ.out.tab
58.98 kB
demux_NNNNATCTGTGCNNNNN_unmapped.out.mate1.fastq.gz
7.50 MB
Reads (single-end)
fastqc
Directory
demux_NNNNATCTGTGCNNNNN.fastq.gz
24.07 MB
stderr.txt
1.05 kB
demux_NNNNATCTGTGCNNNNN_fastqc.zip
400.59 kB

Copy of Input_Control 15min_20180223_JU

iCount summary
demux_NNNNGAATANNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_gene.tsv
659.50 kB
demux_NNNNGAATANNN_unique_summary.tsv_summary_type.tsv
265 B
iCount xlsites
demux_NNNNGAATANNN_skipped.bam
1.54 MB
demux_NNNNGAATANNN_unique.bed.gz
410.49 kB
demux_NNNNGAATANNN_multi.bed.gz
2.36 MB
demux_NNNNGAATANNN_unique.bedgraph
1.56 MB
STAR
demux_NNNNGAATANNN.bam
363.08 MB
demux_NNNNGAATANNN_unmapped.out.mate1.fastq.gz
32.04 MB
demux_NNNNGAATANNN.bam.bai
3.71 MB
demux_NNNNGAATANNN_stats.txt
1.80 kB
demux_NNNNGAATANNN_SJ.out.tab
146.29 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGAATANNN_fastqc.zip
496.43 kB
demux_NNNNGAATANNN.fastq.gz
64.18 MB

m62A_786O_60S fraction_input 725ng sc_spike_in_20180927_JU

iCount reads proxy
fastqc
Directory
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
379.93 kB
stderr.txt
1.16 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
606.18 kB
Paraclu
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
117 B
iCount RNA-maps
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
166.38 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
703 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
1.27 MB
STAR
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
379.93 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.55 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
6.92 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
2.22 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.16 kB
iCount xlsites
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bed.gz
7.67 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_singleAndMulti.bed.gz
149.22 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_reads_single.bed.gz
8.22 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bedgraph
24.26 kB
STAR
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.40 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
649.94 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.36 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
476 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
345.28 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
iCount xlsites
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
1.24 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
5.84 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
3.67 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
1.32 kB
iCount summary
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
645 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
3.23 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
425 B
STAR
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
361.00 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.44 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.07 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
1.28 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.26 kB
iCount RNA-maps
results.tar.gz
213.07 kB
iCount summary
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
529 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
9.45 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
253 B
iCount reads proxy
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
563.73 kB
fastqc
Directory
stderr.txt
2.00 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
582.89 kB
STAR
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
563.73 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed.bam.bai
17.19 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed.bam
1.80 MB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed.bw
104.36 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
724 B
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
542.77 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
1.27 MB
FASTQ file (single-end)
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju.fastq.gz
1.31 MB
fastqc
Directory
stderr.txt
1.82 kB
m62a-786o-60s-fraction-input-725ng-sc-spike-in-20180927-ju_fastqc.zip
530.05 kB

m6A_Ctrl_24H_20180106_JU

STAR
demux_NNNNTCGCCNNN.bam.bai
3.75 MB
demux_NNNNTCGCCNNN.bam
610.82 MB
demux_NNNNTCGCCNNN_unmapped.out.mate1.fastq.gz
8.63 MB
demux_NNNNTCGCCNNN_stats.txt
1.80 kB
demux_NNNNTCGCCNNN_SJ.out.tab
765.32 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCGCCNNN.fastq.gz
74.42 MB
demux_NNNNTCGCCNNN_fastqc.zip
442.81 kB
stderr.txt
1.00 kB
iCount xlsites
demux_NNNNTCGCCNNN_skipped.bam
5.09 MB
demux_NNNNTCGCCNNN_unique.bed.gz
1.45 MB
demux_NNNNTCGCCNNN_multi.bed.gz
3.59 MB

m1A_786O_80S P1 fraction_input 650ng sc_spike_in_20180927_JU

FASTQ file (single-end)
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju.fastq.gz
50.71 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_fastqc.zip
556.73 kB
fastqc
Directory
stderr.txt
1.77 kB
STAR
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
5.80 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
32.45 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
2.16 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.67 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
37.79 kB
iCount summary
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
262 B
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
634 B
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
215.55 kB
iCount xlsites
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
3.24 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
384.51 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
109.24 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
453.66 kB
iCount xlsites
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
55.36 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
100.34 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
268 B
STAR
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
13.26 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bam.bai
20.56 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bam
134.41 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bw
106.65 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
Cutadapt (single-end)
report.txt
727 B
fastqc
Directory
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
52.03 MB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
559.38 kB
iCount reads proxy
fastqc
Directory
stderr.txt
2.14 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
548.96 kB
m1a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
13.26 MB
iCount RNA-maps
results.tar.gz
340.20 kB

GAM660A1-A37_S1_L001_R1_001.fastq.gz

Reads (single-end)
GAM660A1-A37_S1_L001_R1_001.fastq.gz
16.66 GB
fastqc
Directory
GAM660A1-A37_S1_L001_R1_001_fastqc.zip
469.98 kB
stderr.txt
1.13 kB

m62A_786O_P6-P9 fraction_input 1500ng sc_spike_in_20180927_JU

STAR
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
41.09 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.71 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
5.88 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.79 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
81.98 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.71 kB
STAR
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
18.66 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
41.23 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bw
104.68 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam
61.13 MB
iCount xlsites
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
26.08 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
270 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
19.81 kB
iCount reads proxy
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
41.23 MB
fastqc
Directory
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
772.88 kB
stderr.txt
2.16 kB
Cutadapt (single-end)
report.txt
706 B
fastqc
Directory
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
43.80 MB
iCount reads proxy
fastqc
Directory
stderr.txt
2.16 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
41.09 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
771.95 kB
Paraclu
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
iCount RNA-maps
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
150.42 kB
iCount summary
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
528 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
427 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
10.55 kB
iCount xlsites
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
19.02 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
3.82 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
11.25 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
3.66 kB
iCount xlsites
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bed.gz
18.14 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_reads_single.bed.gz
19.29 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_single.bedgraph
59.44 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_trimmed_singleAndMulti.bed.gz
309.67 kB
STAR
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
40.96 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.45 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
17.60 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
1.50 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
59.76 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
FASTQ file (single-end)
fastqc
Directory
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_fastqc.zip
726.02 kB
stderr.txt
1.79 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju.fastq.gz
51.62 MB
STAR
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
40.85 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
17.25 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
2.81 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
61.10 MB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.51 MB
iCount RNA-maps
results.tar.gz
242.79 kB
iCount summary
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
414 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
24.75 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
254 B
iCount xlsites
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
41.83 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
27.33 kB
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
8.74 kB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
43.74 MB
report.txt
729 B
m62a-786o-p6-p9-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
756.05 kB

m6A_786O_NoQ 3'_20180106_JU

Cutadapt (single-end)
fastqc
Directory
report.txt
695 B
m6a-786o-noq-3-20180106-ju_trimmed.fastq.gz
61.26 MB
m6a-786o-noq-3-20180106-ju_trimmed_fastqc.zip
459.98 kB
STAR
m6a-786o-noq-3-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
18.02 MB
m6a-786o-noq-3-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-3-20180106-ju_trimmed.bam
94.90 MB
m6a-786o-noq-3-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-3-20180106-ju_trimmed.bw
106.39 kB
m6a-786o-noq-3-20180106-ju_trimmed.bam.bai
20.49 kB
iCount reads proxy
fastqc
Directory
stderr.txt
1.34 kB
m6A_786O_NoQ3'_20180106_JU_unmapped.fastq.gz
18.02 MB
m6A_786O_NoQ3'_20180106_JU_unmapped_fastqc.zip
475.91 kB
Reads (single-end)
fastqc
Directory
m6a-786o-noq-3-20180106-ju.fastq.gz
59.69 MB
stderr.txt
1.11 kB
m6a-786o-noq-3-20180106-ju_fastqc.zip
457.47 kB

m62A_786O_80S P1 fraction_input 650ng sc_spike_in_20180927_JU

STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_unmapped.out.mate1.fastq.gz
937.12 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam.bai
1.53 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bam
2.21 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.bw
15.76 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_SJ.out.tab
2.42 kB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.38 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
889.15 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.33 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.50 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
449 B
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
935.54 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
1.53 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
2.21 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
2.42 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
15.76 kB
iCount reads proxy
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
1021.15 kB
fastqc
Directory
stderr.txt
2.16 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
667.79 kB
iCount RNA-maps
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
188.43 kB
iCount reads proxy
stderr.txt
2.05 kB
fastqc
Directory
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
937.12 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
677.95 kB
Paraclu
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
iCount summary
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
567 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
419 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
4.44 kB
Paraclu
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_peaks.bed.gz
120 B
iCount RNA-maps
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.tar.gz
161.86 kB
Cutadapt (single-end)
fastqc
Directory
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed.fastq.gz
2.35 MB
report.txt
705 B
Cutadapt (single-end)
fastqc
Directory
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed.fastq.gz
1.22 MB
report.txt
722 B
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed_stats.txt
1.79 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed_unmapped.out.mate1.fastq.gz
1021.15 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam.bai
1.64 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed.bam
10.22 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed_SJ.out.tab
4.44 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_trimmed.bw
19.31 kB
iCount xlsites
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bed.gz
7.28 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_skipped.bam
2.93 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_single.bedgraph
22.54 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_singleAndMulti.bed.gz
48.36 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_trimmed_reads_single.bed.gz
7.80 kB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
959.23 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.40 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.67 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.54 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
767 B
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.78 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.33 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
1.38 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
449 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
890.66 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.50 kB
iCount xlsites
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
1.59 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
6.79 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
4.50 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
1.49 kB
iCount summary
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
426 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
5.96 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
585 B
FASTQ file (single-end)
fastqc
Directory
stderr.txt
1.79 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_fastqc.zip
582.51 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju.fastq.gz
2.48 MB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.47 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
2.09 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
958.94 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
16.46 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
2.27 kB
iCount summary
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
247 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
534 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
15.70 kB
Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
161.91 kB
Cutadapt (single-end)
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
1.22 MB
fastqc
Directory
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
639.51 kB
report.txt
745 B
iCount summary
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
419 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
4.44 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
567 B
iCount reads proxy
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
935.54 kB
fastqc
Directory
stderr.txt
2.05 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
677.95 kB
iCount reads proxy
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
1.22 MB
fastqc
Directory
stderr.txt
2.16 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
639.16 kB
STAR
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bam
3.81 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
1.22 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bam.bai
19.58 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.bw
104.85 kB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
728 B
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
2.34 MB
m62a-786o-80s-p1-fraction-input-650ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
590.62 kB
iCount RNA-maps
results.tar.gz
230.79 kB

m6A_786O_NoQ 4H_20180106_JU

STAR
m6a-786o-noq-4h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-4h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-4h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-4h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
44.22 MB
m6a-786o-noq-4h-20180106-ju_trimmed.bam
218.31 MB
m6a-786o-noq-4h-20180106-ju_trimmed.bw
106.66 kB
STAR
m6A_786O_NoQ4H_20180106_JU_unmapped.bam.bai
3.43 MB
m6A_786O_NoQ4H_20180106_JU_unmapped.bam
93.81 MB
m6A_786O_NoQ4H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
12.24 MB
m6A_786O_NoQ4H_20180106_JU_unmapped_stats.txt
1.81 kB
m6A_786O_NoQ4H_20180106_JU_unmapped_SJ.out.tab
838.83 kB
m6A_786O_NoQ4H_20180106_JU_unmapped.bw
37.61 kB
iCount xlsites
m6A_786O_NoQ4H_20180106_JU_unmapped_single.bed.gz
2.44 MB
m6A_786O_NoQ4H_20180106_JU_unmapped_skipped.bam
3.54 kB
m6A_786O_NoQ4H_20180106_JU_unmapped_singleAndMulti.bed.gz
4.48 MB
m6A_786O_NoQ4H_20180106_JU_unmapped_single.bedgraph
11.47 MB
iCount summary
m6A_786O_NoQ4H_20180106_JU_unmapped_single_summary_subtype.tsv
651 B
m6A_786O_NoQ4H_20180106_JU_unmapped_single_summary_type.tsv
269 B
m6A_786O_NoQ4H_20180106_JU_unmapped_single_summary_gene.tsv
995.55 kB
iCount reads proxy
fastqc
Directory
m6A_786O_NoQ4H_20180106_JU_unmapped_fastqc.zip
419.88 kB
stderr.txt
1.34 kB
m6A_786O_NoQ4H_20180106_JU_unmapped.fastq.gz
44.22 MB
iCount xlsites
m6a-786o-noq-4h-20180106-ju_trimmed_single.bed.gz
81.12 kB
m6a-786o-noq-4h-20180106-ju_trimmed_singleAndMulti.bed.gz
124.48 kB
m6a-786o-noq-4h-20180106-ju_trimmed_single.bedgraph
188 B
m6a-786o-noq-4h-20180106-ju_trimmed_skipped.bam
3.98 kB
Cutadapt (single-end)
report.txt
696 B
fastqc
Directory
m6a-786o-noq-4h-20180106-ju_trimmed.fastq.gz
141.00 MB
m6a-786o-noq-4h-20180106-ju_trimmed_fastqc.zip
439.86 kB
Reads (single-end)
m6a-786o-noq-4h-20180106-ju.fastq.gz
137.18 MB
stderr.txt
1.13 kB
fastqc
Directory
m6a-786o-noq-4h-20180106-ju_fastqc.zip
439.53 kB

m1A_786O_P2-P5 fraction_input 1500ng sc_spike_in_20180927_JU

iCount summary
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
589 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
260 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
182.11 kB
iCount summary
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
736 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
445 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
71.13 kB
STAR
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
2.27 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
20.34 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
18.08 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
25.97 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
4.40 MB
iCount xlsites
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
54.60 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
93.55 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
268 B
FASTQ file (single-end)
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju.fastq.gz
47.37 MB
fastqc
Directory
stderr.txt
1.77 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_fastqc.zip
570.27 kB
STAR
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam
105.94 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
8.53 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bw
106.51 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
20.56 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
STAR
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
4.48 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
21.28 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
2.02 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
32.67 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.95 kB
STAR
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
3.37 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
11.01 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
15.05 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.60 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
18.95 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
Paraclu
peaks.bed.gz
760 B
iCount RNA-maps
results.tar.gz
270.91 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
744 B
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
8.53 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
532.69 kB
iCount xlsites
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
140.26 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
26.87 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
28.09 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
91.42 kB
iCount xlsites
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
96.92 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
430.11 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
100.93 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
341.10 kB
iCount reads proxy
fastqc
Directory
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
4.40 MB
stderr.txt
2.14 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
513.26 kB
iCount xlsites
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
3.11 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
348.05 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
80.21 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
279.49 kB
iCount reads proxy
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
8.53 MB
fastqc
Directory
stderr.txt
2.14 kB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
532.35 kB
Cutadapt (single-end)
fastqc
Directory
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
48.72 MB
m1a-786o-p2-p5-fraction-input-1500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
570.81 kB
report.txt
727 B
iCount RNA-maps
results.tar.gz
341.53 kB

m6A_786O_P2-P5 fraction_input 500ng sc_spike_in_20180927_JU

FASTQ file (single-end)
fastqc
Directory
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju.fastq.gz
36.77 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_fastqc.zip
508.22 kB
stderr.txt
1.75 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
726 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
37.88 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
500.70 kB
iCount xlsites
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
10.90 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
67.23 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
32.38 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
9.98 kB
iCount summary
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
798 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
444 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
47.83 kB
STAR
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
2.51 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
1.96 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
13.94 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
31.71 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
17.43 kB
STAR
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
1.56 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.49 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
7.00 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
11.40 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
18.60 kB
iCount RNA-maps
results.tar.gz
326.51 kB
Paraclu
peaks.bed.gz
35 B
iCount RNA-maps
results.tar.gz
459.37 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
743 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
495.61 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
9.10 MB
iCount reads proxy
fastqc
Directory
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
529.19 kB
stderr.txt
2.12 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
2.51 MB
iCount xlsites
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
294.41 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
118.33 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
385.66 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
104.70 kB
iCount summary
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
589 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
301.20 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
260 B
iCount xlsites
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
94.47 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
233.01 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
348.51 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.92 kB
STAR
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
2.59 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
15.05 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
38.88 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.80 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.40 kB
iCount reads proxy
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
9.10 MB
stderr.txt
2.12 kB
fastqc
Directory
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
495.27 kB
iCount xlsites
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
35.53 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
266 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
42.61 kB
STAR
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed.bam.bai
19.58 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
9.10 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed.bam
50.70 MB
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m6a-786o-p2-p5-fraction-input-500ng-sc-spike-in-20180927-ju_trimmed.bw
105.00 kB

Input_NoQ_2_plus DM-Akg 4hrs_20180223_JU

Cutadapt (single-end)
fastqc
Directory
demux_NNNNGCTTGCGTNNNNN_trimmed.fastq.gz
18.18 MB
demux_NNNNGCTTGCGTNNNNN_trimmed_fastqc.zip
398.56 kB
report.txt
672 B
iCount summary
demux_NNNNGCTTGCGTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGCGTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
334.71 kB
demux_NNNNGCTTGCGTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
iCount xlsites
demux_NNNNGCTTGCGTNNNNN_trimmed_singleAndMulti.bed.gz
1.15 MB
demux_NNNNGCTTGCGTNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGCTTGCGTNNNNN_trimmed_single.bed.gz
139.00 kB
demux_NNNNGCTTGCGTNNNNN_trimmed_single.bedgraph
499.25 kB
STAR
demux_NNNNGCTTGCGTNNNNN_trimmed.bam
105.31 MB
demux_NNNNGCTTGCGTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
5.71 MB
demux_NNNNGCTTGCGTNNNNN_trimmed.bam.bai
2.71 MB
demux_NNNNGCTTGCGTNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGCGTNNNNN_trimmed_SJ.out.tab
45.90 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCGTNNNNN.fastq.gz
17.81 MB
demux_NNNNGCTTGCGTNNNNN_fastqc.zip
414.74 kB
stderr.txt
1.05 kB

Input_NoQ_2_15min_20180223_JU

STAR
demux_NNNNGCTTGAGGNNNNN_trimmed.bam.bai
2.72 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_SJ.out.tab
50.82 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
6.71 MB
demux_NNNNGCTTGAGGNNNNN_trimmed.bam
125.98 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
demux_NNNNGCTTGAGGNNNNN_trimmed_fastqc.zip
393.63 kB
demux_NNNNGCTTGAGGNNNNN_trimmed.fastq.gz
21.71 MB
Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNGCTTGAGGNNNNN.fastq.gz
21.18 MB
demux_NNNNGCTTGAGGNNNNN_fastqc.zip
389.69 kB
iCount summary
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
353.65 kB
iCount xlsites
demux_NNNNGCTTGAGGNNNNN_trimmed_single.bed.gz
148.45 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_singleAndMulti.bed.gz
1.18 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_single.bedgraph
535.28 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_skipped.bam
3.26 kB

m6A_786O_P6-P9 fraction_input 400ng sc_spike_in_20180927_JU

Cutadapt (single-end)
fastqc
Directory
report.txt
726 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed.fastq.gz
49.88 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_fastqc.zip
511.01 kB
iCount xlsites
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_reads_single.bed.gz
120.10 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bed.gz
106.15 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
274.25 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_single.bedgraph
394.12 kB
Cutadapt (single-end)
report.txt
743 B
fastqc
Directory
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_fastqc.zip
499.77 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.fastq.gz
9.15 MB
iCount xlsites
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_single.bedgraph
266 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_skipped.bam
3.97 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_singleAndMulti.bed.gz
45.08 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_single.bed.gz
37.28 kB
iCount reads proxy
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
499.43 kB
fastqc
Directory
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
9.15 MB
stderr.txt
2.12 kB
iCount reads proxy
fastqc
Directory
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.fastq.gz
2.98 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_fastqc.zip
519.33 kB
stderr.txt
2.12 kB
FASTQ file (single-end)
fastqc
Directory
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju.fastq.gz
48.35 MB
stderr.txt
1.75 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_fastqc.zip
503.08 kB
STAR
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_unmapped.out.mate1.fastq.gz
9.15 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_stats.txt
1.78 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed.bam.bai
18.24 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed_SJ.out.tab
0 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed.bam
67.43 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-ju_trimmed.bw
105.03 kB
STAR
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
2.81 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
16.17 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.78 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
19.27 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
44.22 kB
iCount summary
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
665 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
442 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
45.43 kB
Paraclu
peaks.bed.gz
89 B
iCount RNA-maps
results.tar.gz
302.85 kB
STAR
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
1.83 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bam
9.00 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bam.bai
1.49 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_stats.txt
1.79 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_SJ.out.tab
12.13 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped.bw
18.88 kB
iCount xlsites
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
2.93 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
10.56 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_reads_single.bed.gz
11.46 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
84.16 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
34.65 kB
STAR
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
2.98 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam.bai
1.94 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed_SJ.out.tab
35.54 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bam
13.36 MB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_trimmed.bw
17.17 kB
iCount RNA-maps
results.tar.gz
448.21 kB
iCount summary
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_subtype.tsv
627 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_type.tsv
261 B
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single_summary_gene.tsv
288.35 kB
iCount xlsites
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_singleAndMulti.bed.gz
237.15 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_skipped.bam
3.25 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bedgraph
353.67 kB
m6a-786o-p6-p9-fraction-input-400ng-sc-spike-in-20180927-jufastqgz_unmapped_single.bed.gz
95.16 kB

m6A_786O_NoQ 24H_20180106_JU

STAR
m6A_786O_NoQ24H_20180106_JU_unmapped_SJ.out.tab
661.32 kB
m6A_786O_NoQ24H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
7.68 MB
m6A_786O_NoQ24H_20180106_JU_unmapped.bam.bai
3.02 MB
m6A_786O_NoQ24H_20180106_JU_unmapped.bam
60.44 MB
m6A_786O_NoQ24H_20180106_JU_unmapped_stats.txt
1.81 kB
m6A_786O_NoQ24H_20180106_JU_unmapped.bw
32.70 kB
STAR
m6a-786o-noq-24h-20180106-ju_trimmed.bam
148.85 MB
m6a-786o-noq-24h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
26.94 MB
m6a-786o-noq-24h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-24h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-24h-20180106-ju_trimmed.bw
106.52 kB
m6a-786o-noq-24h-20180106-ju_trimmed_SJ.out.tab
0 B
Reads (single-end)
m6a-786o-noq-24h-20180106-ju.fastq.gz
93.00 MB
fastqc
Directory
stderr.txt
1.21 kB
m6a-786o-noq-24h-20180106-ju_fastqc.zip
451.30 kB
iCount summary
m6A_786O_NoQ24H_20180106_JU_unmapped_single_summary_gene.tsv
903.11 kB
m6A_786O_NoQ24H_20180106_JU_unmapped_single_summary_subtype.tsv
646 B
m6A_786O_NoQ24H_20180106_JU_unmapped_single_summary_type.tsv
269 B
iCount xlsites
m6A_786O_NoQ24H_20180106_JU_unmapped_skipped.bam
3.64 kB
m6A_786O_NoQ24H_20180106_JU_unmapped_singleAndMulti.bed.gz
3.15 MB
m6A_786O_NoQ24H_20180106_JU_unmapped_single.bed.gz
1.77 MB
m6A_786O_NoQ24H_20180106_JU_unmapped_single.bedgraph
8.25 MB
iCount reads proxy
m6A_786O_NoQ24H_20180106_JU_unmapped.fastq.gz
26.94 MB
fastqc
Directory
stderr.txt
1.36 kB
m6A_786O_NoQ24H_20180106_JU_unmapped_fastqc.zip
482.85 kB
iCount xlsites
m6a-786o-noq-24h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-noq-24h-20180106-ju_trimmed_single.bed.gz
78.30 kB
m6a-786o-noq-24h-20180106-ju_trimmed_singleAndMulti.bed.gz
119.86 kB
m6a-786o-noq-24h-20180106-ju_trimmed_single.bedgraph
189 B
Cutadapt (single-end)
m6a-786o-noq-24h-20180106-ju_trimmed.fastq.gz
95.57 MB
fastqc
Directory
report.txt
697 B
m6a-786o-noq-24h-20180106-ju_trimmed_fastqc.zip
453.17 kB

Input_NoQ plus DM-Akg 4hrs_20180223_JU

iCount summary
demux_NNNNTGCGTNNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNTGCGTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNTGCGTNNN_trimmed_single_summary.tsv_summary_gene.tsv
579.56 kB
STAR
demux_NNNNTGCGTNNN_trimmed_unmapped.out.mate1.fastq.gz
15.23 MB
demux_NNNNTGCGTNNN_trimmed.bam.bai
3.50 MB
demux_NNNNTGCGTNNN_trimmed.bam
218.72 MB
demux_NNNNTGCGTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTGCGTNNN_trimmed_SJ.out.tab
120.30 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNTGCGTNNN_trimmed.fastq.gz
36.69 MB
demux_NNNNTGCGTNNN_trimmed_fastqc.zip
454.75 kB
report.txt
670 B
Reads (single-end)
fastqc
Directory
demux_NNNNTGCGTNNN_fastqc.zip
497.73 kB
demux_NNNNTGCGTNNN.fastq.gz
44.28 MB
stderr.txt
975 B
iCount xlsites
demux_NNNNTGCGTNNN_trimmed_single.bed.gz
323.58 kB
demux_NNNNTGCGTNNN_trimmed_singleAndMulti.bed.gz
2.03 MB
demux_NNNNTGCGTNNN_trimmed_single.bedgraph
1.22 MB
demux_NNNNTGCGTNNN_trimmed_skipped.bam
2.91 kB

m6A_786O_NoQ + DM-Akg 15'_20180106_JU

STAR
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed.bam.bai
19.02 kB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
8.41 MB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed.bam
52.80 MB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed.bw
105.78 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed.fastq.gz
41.58 MB
m6a-786o-noq-dm-akg-15-20180106-ju_trimmed_fastqc.zip
545.75 kB
report.txt
703 B
iCount reads proxy
m6A_786O_NoQ+DM-Akg15'_20180106_JU_unmapped.fastq.gz
8.41 MB
fastqc
Directory
m6A_786O_NoQ+DM-Akg15'_20180106_JU_unmapped_fastqc.zip
561.63 kB
stderr.txt
1.50 kB
Reads (single-end)
m6a-786o-noq-dm-akg-15-20180106-ju.fastq.gz
40.36 MB
fastqc
Directory
stderr.txt
1.26 kB
m6a-786o-noq-dm-akg-15-20180106-ju_fastqc.zip
540.82 kB

m6A_786O_Ctrl 15'_20180106_JU

Cutadapt (single-end)
fastqc
Directory
report.txt
696 B
m6a-786o-ctrl-15-20180106-ju_trimmed.fastq.gz
32.28 MB
m6a-786o-ctrl-15-20180106-ju_trimmed_fastqc.zip
491.58 kB
Reads (single-end)
fastqc
Directory
m6a-786o-ctrl-15-20180106-ju.fastq.gz
31.27 MB
m6a-786o-ctrl-15-20180106-ju_fastqc.zip
490.92 kB
stderr.txt
1.15 kB
iCount reads proxy
m6A_786O_Ctrl15'_20180106_JU_unmapped.fastq.gz
6.26 MB
fastqc
Directory
m6A_786O_Ctrl15'_20180106_JU_unmapped_fastqc.zip
554.58 kB
stderr.txt
1.38 kB
STAR
m6a-786o-ctrl-15-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
6.26 MB
m6a-786o-ctrl-15-20180106-ju_trimmed.bam.bai
19.23 kB
m6a-786o-ctrl-15-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-15-20180106-ju_trimmed.bam
39.84 MB
m6a-786o-ctrl-15-20180106-ju_trimmed.bw
105.67 kB
m6a-786o-ctrl-15-20180106-ju_trimmed_SJ.out.tab
0 B

m6A_786O_Ctrl 4H_20180106_JU

iCount xlsites
m6a-786o-ctrl-4h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_single.bed.gz
78.33 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_singleAndMulti.bed.gz
118.54 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_single.bedgraph
189 B
iCount xlsites
m6A_786O_Ctrl4H_20180106_JU_unmapped_single.bed.gz
1.81 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_singleAndMulti.bed.gz
3.34 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_single.bedgraph
8.40 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_skipped.bam
3.12 kB
STAR
m6A_786O_Ctrl4H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
9.41 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_SJ.out.tab
653.23 kB
m6A_786O_Ctrl4H_20180106_JU_unmapped_stats.txt
1.81 kB
m6A_786O_Ctrl4H_20180106_JU_unmapped.bam
72.18 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped.bam.bai
3.17 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped.bw
32.40 kB
STAR
m6a-786o-ctrl-4h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
33.37 MB
m6a-786o-ctrl-4h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-4h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-4h-20180106-ju_trimmed.bam
176.21 MB
m6a-786o-ctrl-4h-20180106-ju_trimmed.bw
106.58 kB
Reads (single-end)
fastqc
Directory
m6a-786o-ctrl-4h-20180106-ju.fastq.gz
111.82 MB
stderr.txt
1.15 kB
m6a-786o-ctrl-4h-20180106-ju_fastqc.zip
444.76 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
697 B
m6a-786o-ctrl-4h-20180106-ju_trimmed.fastq.gz
114.83 MB
m6a-786o-ctrl-4h-20180106-ju_trimmed_fastqc.zip
446.51 kB
iCount reads proxy
fastqc
Directory
m6A_786O_Ctrl4H_20180106_JU_unmapped.fastq.gz
33.37 MB
m6A_786O_Ctrl4H_20180106_JU_unmapped_fastqc.zip
422.28 kB
stderr.txt
1.36 kB
iCount summary
m6A_786O_Ctrl4H_20180106_JU_unmapped_single_summary_gene.tsv
908.55 kB
m6A_786O_Ctrl4H_20180106_JU_unmapped_single_summary_subtype.tsv
647 B
m6A_786O_Ctrl4H_20180106_JU_unmapped_single_summary_type.tsv
271 B

m6A_786O_Ctrl 15min_20180413_JU

iCount xlsites
demux_NNNNGTTTCNNN_unique.bed.gz
374.01 kB
demux_NNNNGTTTCNNN_skipped.bam
6.25 MB
demux_NNNNGTTTCNNN_multi.bed.gz
1.68 MB
demux_NNNNGTTTCNNN_unique.bedgraph
1.45 MB
Reads (single-end)
demux_NNNNGTTTCNNN_fastqc.zip
444.72 kB
fastqc
Directory
stderr.txt
975 B
demux_NNNNGTTTCNNN.fastq.gz
328.66 MB
iCount peaks
demux_NNNNGTTTCNNN_unique_peaks.bed.gz
60.26 kB
demux_NNNNGTTTCNNN_unique_peaks.bedgraph
122.20 kB
demux_NNNNGTTTCNNN_unique_scores.tsv.gz
448.09 kB
iCount summary
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNGTTTCNNN_unique_summary.tsv_summary_gene.tsv
633.72 kB
STAR
demux_NNNNGTTTCNNN.bam.bai
3.65 MB
demux_NNNNGTTTCNNN_unmapped.out.mate1.fastq.gz
84.32 MB
demux_NNNNGTTTCNNN_stats.txt
1.81 kB
demux_NNNNGTTTCNNN.bam
2.04 GB
demux_NNNNGTTTCNNN_SJ.out.tab
169.46 kB

GAM599A1-A30_S13_L002_R1_001.fastq.gz

Reads (single-end)
GAM599A1-A30_S13_L002_R1_001.fastq.gz
16.45 GB
fastqc
Directory
stderr.txt
1.15 kB
GAM599A1-A30_S13_L002_R1_001_fastqc.zip
500.96 kB

input_Control_20180223_JU

Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCACANNN.fastq.gz
65.88 MB
demux_NNNNTCACANNN_fastqc.zip
434.69 kB
iCount xlsites
demux_NNNNTCACANNN_unique.bed.gz
1.13 MB
demux_NNNNTCACANNN_multi.bed.gz
6.26 MB
demux_NNNNTCACANNN_unique.bedgraph
4.30 MB
demux_NNNNTCACANNN_skipped.bam
3.89 MB
STAR
demux_NNNNTCACANNN.bam.bai
4.23 MB
demux_NNNNTCACANNN_unmapped.out.mate1.fastq.gz
39.04 MB
demux_NNNNTCACANNN_SJ.out.tab
235.59 kB
demux_NNNNTCACANNN.bam
192.96 MB
demux_NNNNTCACANNN_stats.txt
1.81 kB
iCount summary
demux_NNNNTCACANNN_unique_summary.tsv_summary_subtype.tsv
648 B
demux_NNNNTCACANNN_unique_summary.tsv_summary_gene.tsv
884.05 kB
demux_NNNNTCACANNN_unique_summary.tsv_summary_type.tsv
269 B

IgG_786O__20180420_JU

iCount summary
igg-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
436 B
igg-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
974 B
igg-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
35.61 kB
iCount summary
igg-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
260 B
igg-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
623 B
igg-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
295.87 kB
Paraclu
peaks.bed.gz
35 B
iCount reads proxy
fastqc
Directory
igg-786o-20180420-jufastqgz_unmapped.fastq.gz
9.68 MB
igg-786o-20180420-jufastqgz_unmapped_fastqc.zip
533.55 kB
stderr.txt
1.36 kB
Cutadapt (single-end)
fastqc
Directory
igg-786o-20180420-ju_trimmed.fastq.gz
38.73 MB
igg-786o-20180420-ju_trimmed_fastqc.zip
490.44 kB
report.txt
688 B
FASTQ file (single-end)
igg-786o-20180420-ju.fastq.gz
40.23 MB
fastqc
Directory
igg-786o-20180420-ju_fastqc.zip
547.95 kB
stderr.txt
1015 B
STAR
igg-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
2.16 MB
igg-786o-20180420-jufastqgz_unmapped_SJ.out.tab
9.83 kB
igg-786o-20180420-jufastqgz_unmapped.bam
6.56 MB
igg-786o-20180420-jufastqgz_unmapped_stats.txt
1.79 kB
igg-786o-20180420-jufastqgz_unmapped.bw
18.99 kB
igg-786o-20180420-jufastqgz_unmapped.bam.bai
1.48 MB
iCount RNA-maps
results.tar.gz
287.19 kB
iCount xlsites
igg-786o-20180420-jufastqgz_unmapped_skipped.bam
2.93 kB
igg-786o-20180420-jufastqgz_unmapped_reads_single.bed.gz
9.70 kB
igg-786o-20180420-jufastqgz_unmapped_single.bed.gz
8.67 kB
igg-786o-20180420-jufastqgz_unmapped_single.bedgraph
28.23 kB
igg-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
68.90 kB
Cutadapt (single-end)
fastqc
Directory
igg-786o-20180420-jufastqgz_unmapped_trimmed.fastq.gz
9.68 MB
igg-786o-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
533.90 kB
report.txt
704 B
STAR
igg-786o-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
2.94 MB
igg-786o-20180420-jufastqgz_unmapped_trimmed.bam
31.88 MB
igg-786o-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.79 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed.bam.bai
2.31 MB
igg-786o-20180420-jufastqgz_unmapped_trimmed.bw
18.27 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
28.87 kB
iCount xlsites
igg-786o-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
520.90 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
123.33 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
107.45 kB
igg-786o-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
387.50 kB
iCount reads proxy
fastqc
Directory
igg-786o-20180420-jufastqgz_unmapped_fastqc.zip
603.25 kB
igg-786o-20180420-jufastqgz_unmapped.fastq.gz
2.94 MB
stderr.txt
1.36 kB
iCount RNA-maps
results.tar.gz
403.21 kB
iCount xlsites
igg-786o-20180420-jufastqgz_unmapped_single.bed.gz
87.73 kB
igg-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
293.66 kB
igg-786o-20180420-jufastqgz_unmapped_skipped.bam
2.92 kB
igg-786o-20180420-jufastqgz_unmapped_single.bedgraph
313.80 kB
STAR
igg-786o-20180420-jufastqgz_unmapped.bam.bai
1.94 MB
igg-786o-20180420-jufastqgz_unmapped.bam
18.38 MB
igg-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
3.97 MB
igg-786o-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
igg-786o-20180420-jufastqgz_unmapped_SJ.out.tab
35.01 kB
igg-786o-20180420-jufastqgz_unmapped.bw
19.98 kB
iCount xlsites
igg-786o-20180420-ju_trimmed_skipped.bam
3.97 kB
igg-786o-20180420-ju_trimmed_single.bed.gz
50.75 kB
igg-786o-20180420-ju_trimmed_single.bedgraph
190 B
igg-786o-20180420-ju_trimmed_singleAndMulti.bed.gz
85.08 kB
STAR
igg-786o-20180420-ju_trimmed.bam
61.51 MB
igg-786o-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
9.68 MB
igg-786o-20180420-ju_trimmed.bam.bai
20.56 kB
igg-786o-20180420-ju_trimmed_SJ.out.tab
0 B
igg-786o-20180420-ju_trimmed_stats.txt
1.78 kB
igg-786o-20180420-ju_trimmed.bw
106.71 kB

Input_NoQ 24hrs_20180223_JU

iCount xlsites
demux_NNNNGCTCTNNN_trimmed_skipped.bam
3.14 kB
demux_NNNNGCTCTNNN_trimmed_singleAndMulti.bed.gz
1.63 MB
demux_NNNNGCTCTNNN_trimmed_single.bed.gz
264.55 kB
demux_NNNNGCTCTNNN_trimmed_single.bedgraph
1008.60 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTCTNNN.fastq.gz
30.51 MB
stderr.txt
975 B
demux_NNNNGCTCTNNN_fastqc.zip
449.52 kB
iCount summary
demux_NNNNGCTCTNNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
demux_NNNNGCTCTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNGCTCTNNN_trimmed_single_summary.tsv_summary_gene.tsv
526.32 kB
STAR
demux_NNNNGCTCTNNN_trimmed.bam.bai
3.16 MB
demux_NNNNGCTCTNNN_trimmed_unmapped.out.mate1.fastq.gz
9.17 MB
demux_NNNNGCTCTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTCTNNN_trimmed_SJ.out.tab
97.67 kB
demux_NNNNGCTCTNNN_trimmed.bam
180.72 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNGCTCTNNN_trimmed_fastqc.zip
453.24 kB
demux_NNNNGCTCTNNN_trimmed.fastq.gz
27.55 MB

Input_Control_2_15min_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGATTNNNNN.fastq.gz
37.61 MB
demux_NNNNGCTTGATTNNNNN_fastqc.zip
400.44 kB
stderr.txt
1.05 kB
Cutadapt (single-end)
demux_NNNNGCTTGATTNNNNN_trimmed_fastqc.zip
399.82 kB
fastqc
Directory
demux_NNNNGCTTGATTNNNNN_trimmed.fastq.gz
31.26 MB
report.txt
674 B
STAR
demux_NNNNGCTTGATTNNNNN_trimmed_unmapped.out.mate1.fastq.gz
11.05 MB
demux_NNNNGCTTGATTNNNNN_trimmed.bam.bai
2.93 MB
demux_NNNNGCTTGATTNNNNN_trimmed.bam
176.98 MB
demux_NNNNGCTTGATTNNNNN_trimmed_SJ.out.tab
67.61 kB
demux_NNNNGCTTGATTNNNNN_trimmed_stats.txt
1.80 kB
iCount summary
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_type.tsv
261 B
demux_NNNNGCTTGATTNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
410.90 kB
iCount xlsites
demux_NNNNGCTTGATTNNNNN_trimmed_single.bed.gz
183.49 kB
demux_NNNNGCTTGATTNNNNN_trimmed_skipped.bam
3.70 kB
demux_NNNNGCTTGATTNNNNN_trimmed_singleAndMulti.bed.gz
1.41 MB
demux_NNNNGCTTGATTNNNNN_trimmed_single.bedgraph
670.50 kB

Input_Control 15min_20180223_JU

STAR
demux_NNNNGAATANNN_trimmed_unmapped.out.mate1.fastq.gz
20.78 MB
demux_NNNNGAATANNN_trimmed.bam.bai
3.76 MB
demux_NNNNGAATANNN_trimmed.bam
345.75 MB
demux_NNNNGAATANNN_trimmed_SJ.out.tab
150.41 kB
demux_NNNNGAATANNN_trimmed_stats.txt
1.80 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNGAATANNN_trimmed.fastq.gz
54.19 MB
report.txt
669 B
demux_NNNNGAATANNN_trimmed_fastqc.zip
435.10 kB
iCount summary
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_gene.tsv
675.05 kB
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_subtype.tsv
641 B
iCount xlsites
demux_NNNNGAATANNN_trimmed_singleAndMulti.bed.gz
2.47 MB
demux_NNNNGAATANNN_trimmed_skipped.bam
3.22 kB
demux_NNNNGAATANNN_trimmed_single.bed.gz
424.24 kB
demux_NNNNGAATANNN_trimmed_single.bedgraph
1.62 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGAATANNN.fastq.gz
62.54 MB
stderr.txt
975 B
demux_NNNNGAATANNN_fastqc.zip
516.08 kB

Input_NoQ_2_15min_20180223_JU

STAR
demux_NNNNGCTTGAGGNNNNN_trimmed.bam
125.95 MB
demux_NNNNGCTTGAGGNNNNN_trimmed.bam.bai
2.72 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
6.71 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_SJ.out.tab
50.82 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_stats.txt
1.80 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
673 B
demux_NNNNGCTTGAGGNNNNN_trimmed.fastq.gz
21.70 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_fastqc.zip
387.14 kB
iCount summary
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
348.10 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
261 B
iCount xlsites
demux_NNNNGCTTGAGGNNNNN_trimmed_single.bed.gz
148.32 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_singleAndMulti.bed.gz
1.18 MB
demux_NNNNGCTTGAGGNNNNN_trimmed_skipped.bam
3.26 kB
demux_NNNNGCTTGAGGNNNNN_trimmed_single.bedgraph
534.86 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGAGGNNNNN.fastq.gz
21.17 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGAGGNNNNN_fastqc.zip
403.48 kB

Input_Control-for-NoMet 4hrs_20180223_JU

STAR
demux_NNNNATCTGTTANNNNN_trimmed.bam.bai
2.82 MB
demux_NNNNATCTGTTANNNNN_trimmed_SJ.out.tab
61.06 kB
demux_NNNNATCTGTTANNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNATCTGTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
8.44 MB
demux_NNNNATCTGTTANNNNN_trimmed.bam
145.15 MB
iCount xlsites
demux_NNNNATCTGTTANNNNN_trimmed_singleAndMulti.bed.gz
1.29 MB
demux_NNNNATCTGTTANNNNN_trimmed_single.bed.gz
163.27 kB
demux_NNNNATCTGTTANNNNN_trimmed_single.bedgraph
593.94 kB
demux_NNNNATCTGTTANNNNN_trimmed_skipped.bam
3.05 kB
iCount summary
demux_NNNNATCTGTTANNNNN_trimmed_single_summary.tsv_summary_type.tsv
258 B
demux_NNNNATCTGTTANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
628 B
demux_NNNNATCTGTTANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
380.31 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNATCTGTTANNNNN_trimmed.fastq.gz
25.22 MB
demux_NNNNATCTGTTANNNNN_trimmed_fastqc.zip
404.82 kB
report.txt
674 B
Reads (single-end)
demux_NNNNATCTGTTANNNNN_fastqc.zip
435.33 kB
fastqc
Directory
stderr.txt
1.10 kB
demux_NNNNATCTGTTANNNNN.fastq.gz
29.08 MB

Input_Control 3min_20180223_JU

iCount xlsites
demux_NNNNTCCACNNN_trimmed_singleAndMulti.bed.gz
1.25 MB
demux_NNNNTCCACNNN_trimmed_single.bed.gz
163.21 kB
demux_NNNNTCCACNNN_trimmed_single.bedgraph
593.88 kB
demux_NNNNTCCACNNN_trimmed_skipped.bam
3.09 kB
STAR
demux_NNNNTCCACNNN_trimmed_unmapped.out.mate1.fastq.gz
20.20 MB
demux_NNNNTCCACNNN_trimmed.bam.bai
2.90 MB
demux_NNNNTCCACNNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCCACNNN_trimmed.bam
373.47 MB
demux_NNNNTCCACNNN_trimmed_SJ.out.tab
62.29 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCCACNNN.fastq.gz
71.12 MB
demux_NNNNTCCACNNN_fastqc.zip
475.79 kB
stderr.txt
975 B
iCount summary
demux_NNNNTCCACNNN_trimmed_single_summary.tsv_summary_gene.tsv
382.84 kB
demux_NNNNTCCACNNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNTCCACNNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
Cutadapt (single-end)
fastqc
Directory
demux_NNNNTCCACNNN_trimmed.fastq.gz
63.39 MB
report.txt
670 B
demux_NNNNTCCACNNN_trimmed_fastqc.zip
426.54 kB

Input_NoQ 15min_20180223_JU

Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNTTTAANNN.fastq.gz
40.16 MB
demux_NNNNTTTAANNN_fastqc.zip
470.77 kB
iCount summary
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_gene.tsv
572.51 kB
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNTTTAANNN_trimmed_single_summary.tsv_summary_type.tsv
265 B
STAR
demux_NNNNTTTAANNN_trimmed_unmapped.out.mate1.fastq.gz
13.67 MB
demux_NNNNTTTAANNN_trimmed.bam.bai
3.48 MB
demux_NNNNTTTAANNN_trimmed_SJ.out.tab
112.31 kB
demux_NNNNTTTAANNN_trimmed_stats.txt
1.80 kB
demux_NNNNTTTAANNN_trimmed.bam
216.64 MB
iCount xlsites
demux_NNNNTTTAANNN_trimmed_single.bed.gz
311.90 kB
demux_NNNNTTTAANNN_trimmed_skipped.bam
3.30 kB
demux_NNNNTTTAANNN_trimmed_singleAndMulti.bed.gz
1.99 MB
demux_NNNNTTTAANNN_trimmed_single.bedgraph
1.16 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNTTTAANNN_trimmed.fastq.gz
35.55 MB
demux_NNNNTTTAANNN_trimmed_fastqc.zip
455.45 kB

Input_NoQ 3min_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNCCGGANNN.fastq.gz
113.02 MB
stderr.txt
1.00 kB
demux_NNNNCCGGANNN_fastqc.zip
452.96 kB
STAR
demux_NNNNCCGGANNN_trimmed_unmapped.out.mate1.fastq.gz
31.89 MB
demux_NNNNCCGGANNN_trimmed.bam
650.90 MB
demux_NNNNCCGGANNN_trimmed.bam.bai
3.18 MB
demux_NNNNCCGGANNN_trimmed_stats.txt
1.81 kB
demux_NNNNCCGGANNN_trimmed_SJ.out.tab
91.24 kB
iCount xlsites
demux_NNNNCCGGANNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCCGGANNN_trimmed_single.bed.gz
243.70 kB
demux_NNNNCCGGANNN_trimmed_single.bedgraph
911.05 kB
demux_NNNNCCGGANNN_trimmed_singleAndMulti.bed.gz
1.61 MB
iCount summary
demux_NNNNCCGGANNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNCCGGANNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNCCGGANNN_trimmed_single_summary.tsv_summary_gene.tsv
506.92 kB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
demux_NNNNCCGGANNN_trimmed.fastq.gz
105.88 MB
demux_NNNNCCGGANNN_trimmed_fastqc.zip
435.64 kB

Input_NoQ_2_plus DM-Akg 15min_20180223_JU

Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNGCTTGTTANNNNN.fastq.gz
34.23 MB
demux_NNNNGCTTGTTANNNNN_fastqc.zip
388.58 kB
STAR
demux_NNNNGCTTGTTANNNNN_trimmed_unmapped.out.mate1.fastq.gz
9.72 MB
demux_NNNNGCTTGTTANNNNN_trimmed.bam.bai
2.70 MB
demux_NNNNGCTTGTTANNNNN_trimmed.bam
129.23 MB
demux_NNNNGCTTGTTANNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGTTANNNNN_trimmed_SJ.out.tab
50.93 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
674 B
demux_NNNNGCTTGTTANNNNN_trimmed_fastqc.zip
414.17 kB
demux_NNNNGCTTGTTANNNNN_trimmed.fastq.gz
24.73 MB
iCount xlsites
demux_NNNNGCTTGTTANNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGCTTGTTANNNNN_trimmed_single.bed.gz
145.54 kB
demux_NNNNGCTTGTTANNNNN_trimmed_singleAndMulti.bed.gz
1.17 MB
demux_NNNNGCTTGTTANNNNN_trimmed_single.bedgraph
525.19 kB
iCount summary
demux_NNNNGCTTGTTANNNNN_trimmed_single_summary.tsv_summary_gene.tsv
343.80 kB
demux_NNNNGCTTGTTANNNNN_trimmed_single_summary.tsv_summary_type.tsv
260 B
demux_NNNNGCTTGTTANNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B

Input_NoQ_2_4hrs_20180223_JU

STAR
demux_NNNNGCTTGCTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
5.61 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGCTGNNNNN_trimmed.bam.bai
2.63 MB
demux_NNNNGCTTGCTGNNNNN_trimmed.bam
106.83 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_SJ.out.tab
48.67 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCTGNNNNN.fastq.gz
17.83 MB
stderr.txt
1.10 kB
demux_NNNNGCTTGCTGNNNNN_fastqc.zip
411.67 kB
iCount xlsites
demux_NNNNGCTTGCTGNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_single.bed.gz
132.19 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_single.bedgraph
474.97 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_singleAndMulti.bed.gz
1.11 MB
Cutadapt (single-end)
demux_NNNNGCTTGCTGNNNNN_trimmed.fastq.gz
18.16 MB
report.txt
673 B
demux_NNNNGCTTGCTGNNNNN_trimmed_fastqc.zip
407.39 kB
fastqc
Directory
iCount summary
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
622 B
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
321.90 kB

Input_NoQ plus DM-Akg 24hrs_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNAGACTNNN.fastq.gz
23.94 MB
stderr.txt
975 B
demux_NNNNAGACTNNN_fastqc.zip
444.68 kB
iCount summary
demux_NNNNAGACTNNN_trimmed_single_summary.tsv_summary_gene.tsv
431.75 kB
demux_NNNNAGACTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
629 B
demux_NNNNAGACTNNN_trimmed_single_summary.tsv_summary_type.tsv
261 B
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNAGACTNNN_trimmed.fastq.gz
21.84 MB
demux_NNNNAGACTNNN_trimmed_fastqc.zip
436.68 kB
iCount xlsites
demux_NNNNAGACTNNN_trimmed_single.bed.gz
184.99 kB
demux_NNNNAGACTNNN_trimmed_single.bedgraph
702.55 kB
demux_NNNNAGACTNNN_trimmed_skipped.bam
3.17 kB
demux_NNNNAGACTNNN_trimmed_singleAndMulti.bed.gz
1.22 MB
STAR
demux_NNNNAGACTNNN_trimmed.bam.bai
2.61 MB
demux_NNNNAGACTNNN_trimmed.bam
146.79 MB
demux_NNNNAGACTNNN_trimmed_unmapped.out.mate1.fastq.gz
6.94 MB
demux_NNNNAGACTNNN_trimmed_SJ.out.tab
72.10 kB
demux_NNNNAGACTNNN_trimmed_stats.txt
1.80 kB

m1A_786O_20180420_JU

STAR
demux_NNNNGTAGANNN_trimmed.bam
1.54 GB
demux_NNNNGTAGANNN_trimmed_unmapped.out.mate1.fastq.gz
133.05 MB
demux_NNNNGTAGANNN_trimmed_SJ.out.tab
357.85 kB
demux_NNNNGTAGANNN_trimmed.bam.bai
3.60 MB
demux_NNNNGTAGANNN_trimmed_stats.txt
1.81 kB
iCount summary
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_subtype.tsv
651 B
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_type.tsv
269 B
demux_NNNNGTAGANNN_trimmed_single_summary.tsv_summary_gene.tsv
841.01 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGTAGANNN.fastq.gz
352.03 MB
stderr.txt
975 B
demux_NNNNGTAGANNN_fastqc.zip
455.50 kB
iCount xlsites
demux_NNNNGTAGANNN_trimmed_singleAndMulti.bed.gz
3.02 MB
demux_NNNNGTAGANNN_trimmed_single.bed.gz
740.70 kB
demux_NNNNGTAGANNN_trimmed_single.bedgraph
2.88 MB
demux_NNNNGTAGANNN_trimmed_skipped.bam
7.04 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNGTAGANNN_trimmed_fastqc.zip
464.62 kB
demux_NNNNGTAGANNN_trimmed.fastq.gz
345.10 MB
report.txt
670 B

IgG_786O_Rabbit IgG_20180106_JU

Cutadapt (single-end)
fastqc
Directory
igg-786o-rabbit-igg-20180106-ju_trimmed_fastqc.zip
560.06 kB
igg-786o-rabbit-igg-20180106-ju_trimmed.fastq.gz
14.40 MB
report.txt
698 B
STAR
IgG_786O_RabbitIgG_20180106_JU_unmapped.bam.bai
1.57 MB
IgG_786O_RabbitIgG_20180106_JU_unmapped.bam
5.00 MB
IgG_786O_RabbitIgG_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
909.92 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_stats.txt
1.80 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped.bw
18.09 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_SJ.out.tab
8.40 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.21 kB
igg-786o-rabbit-igg-20180106-ju.fastq.gz
13.95 MB
igg-786o-rabbit-igg-20180106-ju_fastqc.zip
511.72 kB
iCount summary
IgG_786O_RabbitIgG_20180106_JU_unmapped_single_summary_subtype.tsv
580 B
IgG_786O_RabbitIgG_20180106_JU_unmapped_single_summary_gene.tsv
115.05 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_single_summary_type.tsv
257 B
iCount xlsites
IgG_786O_RabbitIgG_20180106_JU_unmapped_single.bedgraph
87.98 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_singleAndMulti.bed.gz
70.39 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_skipped.bam
2.94 kB
IgG_786O_RabbitIgG_20180106_JU_unmapped_single.bed.gz
25.73 kB
iCount xlsites
igg-786o-rabbit-igg-20180106-ju_trimmed_skipped.bam
3.98 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_single.bed.gz
27.46 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_singleAndMulti.bed.gz
36.11 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_single.bedgraph
192 B
STAR
igg-786o-rabbit-igg-20180106-ju_trimmed.bam
17.59 MB
igg-786o-rabbit-igg-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
2.68 MB
igg-786o-rabbit-igg-20180106-ju_trimmed.bam.bai
19.30 kB
igg-786o-rabbit-igg-20180106-ju_trimmed_SJ.out.tab
0 B
igg-786o-rabbit-igg-20180106-ju_trimmed_stats.txt
1.78 kB
igg-786o-rabbit-igg-20180106-ju_trimmed.bw
105.70 kB
iCount reads proxy
fastqc
Directory
IgG_786O_RabbitIgG_20180106_JU_unmapped.fastq.gz
2.68 MB
IgG_786O_RabbitIgG_20180106_JU_unmapped_fastqc.zip
596.83 kB
stderr.txt
1.42 kB

m1A_786O:wtVHL__20180420_JU

Paraclu
peaks.bed.gz
3.36 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
711 B
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
510.35 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.fastq.gz
59.01 MB
iCount xlsites
m1a-786o-wtvhl-20180420-ju_trimmed_skipped.bam
3.97 kB
m1a-786o-wtvhl-20180420-ju_trimmed_single.bed.gz
97.85 kB
m1a-786o-wtvhl-20180420-ju_trimmed_single.bedgraph
202 B
m1a-786o-wtvhl-20180420-ju_trimmed_singleAndMulti.bed.gz
166.09 kB
iCount xlsites
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
1.74 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
460.81 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
500.32 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
1.79 MB
iCount reads proxy
fastqc
Directory
stderr.txt
1.48 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_fastqc.zip
527.51 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.fastq.gz
26.03 MB
FASTQ file (single-end)
fastqc
Directory
m1a-786o-wtvhl-20180420-ju_fastqc.zip
544.78 kB
m1a-786o-wtvhl-20180420-ju.fastq.gz
267.82 MB
stderr.txt
1.11 kB
iCount xlsites
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_skipped.bam
3.85 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
455.21 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bed.gz
99.83 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_reads_single.bed.gz
105.07 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bedgraph
359.38 kB
iCount summary
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
1018 B
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_gene.tsv
239.72 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_type.tsv
459 B
STAR
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bam.bai
1.84 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
20.44 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bam
58.43 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_SJ.out.tab
71.62 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bw
23.03 kB
iCount RNA-maps
results.tar.gz
562.78 kB
iCount RNA-maps
results.tar.gz
325.83 kB
STAR
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bam.bai
3.46 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.80 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
26.03 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bw
24.47 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bam
168.84 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
155.95 kB
iCount reads proxy
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.fastq.gz
59.01 MB
fastqc
Directory
stderr.txt
1.48 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_fastqc.zip
510.01 kB
iCount xlsites
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bed.gz
403.25 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_skipped.bam
4.50 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
1.19 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bedgraph
1.55 MB
iCount summary
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_gene.tsv
640.69 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_type.tsv
265 B
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
642 B
STAR
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
30.46 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bam.bai
2.67 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bam
136.26 MB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped.bw
26.07 kB
m1a-786o-wtvhl-20180420-jufastqgz_unmapped_SJ.out.tab
202.91 kB
STAR
m1a-786o-wtvhl-20180420-ju_trimmed.bam.bai
20.56 kB
m1a-786o-wtvhl-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
59.01 MB
m1a-786o-wtvhl-20180420-ju_trimmed_stats.txt
1.79 kB
m1a-786o-wtvhl-20180420-ju_trimmed_SJ.out.tab
0 B
m1a-786o-wtvhl-20180420-ju_trimmed.bam
682.14 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
695 B
m1a-786o-wtvhl-20180420-ju_trimmed_fastqc.zip
501.81 kB
m1a-786o-wtvhl-20180420-ju_trimmed.fastq.gz
262.50 MB

m6A_786O:wtVHL__20180420_JU

Paraclu
peaks.bed.gz
377 B
FASTQ file (single-end)
fastqc
Directory
m6a-786o-wtvhl-20180420-ju.fastq.gz
304.22 MB
stderr.txt
1.11 kB
m6a-786o-wtvhl-20180420-ju_fastqc.zip
541.01 kB
iCount xlsites
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bed.gz
105.09 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
494.61 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_reads_single.bed.gz
115.70 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bedgraph
377.01 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_skipped.bam
3.71 kB
iCount xlsites
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
6.87 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
1.99 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
2.31 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
9.06 MB
iCount summary
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_gene.tsv
395.12 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_type.tsv
440 B
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
1006 B
iCount RNA-maps
results.tar.gz
420.59 kB
STAR
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
12.92 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bw
25.18 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bam.bai
1.96 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_SJ.out.tab
111.95 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bam
45.33 MB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
498.67 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.fastq.gz
89.10 MB
report.txt
711 B
iCount reads proxy
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.fastq.gz
17.60 MB
fastqc
Directory
stderr.txt
1.48 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_fastqc.zip
536.64 kB
STAR
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
17.60 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bam
487.68 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed.bam.bai
4.82 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.81 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
612.44 kB
iCount RNA-maps
results.tar.gz
1.41 MB
iCount summary
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
647 B
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_type.tsv
269 B
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single_summary_gene.tsv
1006.21 kB
iCount xlsites
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_skipped.bam
3.98 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bed.gz
1.85 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_single.bedgraph
8.41 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
4.48 MB
STAR
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bam
184.92 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bam.bai
3.96 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
29.81 MB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.bw
39.62 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_SJ.out.tab
689.87 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
iCount reads proxy
fastqc
Directory
m6a-786o-wtvhl-20180420-jufastqgz_unmapped.fastq.gz
89.10 MB
stderr.txt
1.48 kB
m6a-786o-wtvhl-20180420-jufastqgz_unmapped_fastqc.zip
498.34 kB
iCount xlsites
m6a-786o-wtvhl-20180420-ju_trimmed_singleAndMulti.bed.gz
155.72 kB
m6a-786o-wtvhl-20180420-ju_trimmed_single.bed.gz
87.06 kB
m6a-786o-wtvhl-20180420-ju_trimmed_single.bedgraph
202 B
m6a-786o-wtvhl-20180420-ju_trimmed_skipped.bam
3.97 kB
STAR
m6a-786o-wtvhl-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
89.10 MB
m6a-786o-wtvhl-20180420-ju_trimmed.bam
487.37 MB
m6a-786o-wtvhl-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-786o-wtvhl-20180420-ju_trimmed_SJ.out.tab
0 B
m6a-786o-wtvhl-20180420-ju_trimmed_stats.txt
1.79 kB
Cutadapt (single-end)
m6a-786o-wtvhl-20180420-ju_trimmed.fastq.gz
298.04 MB
fastqc
Directory
report.txt
695 B
m6a-786o-wtvhl-20180420-ju_trimmed_fastqc.zip
487.00 kB

m6A_786O__20180420_JU

iCount summary
m6a-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
461 B
m6a-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
479.72 kB
m6a-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
1014 B
FASTQ file (single-end)
fastqc
Directory
m6a-786o-20180420-ju.fastq.gz
415.44 MB
stderr.txt
1015 B
m6a-786o-20180420-ju_fastqc.zip
539.86 kB
iCount RNA-maps
results.tar.gz
426.46 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
705 B
m6a-786o-20180420-jufastqgz_unmapped_trimmed.fastq.gz
119.24 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_fastqc.zip
470.09 kB
iCount xlsites
m6a-786o-20180420-jufastqgz_unmapped_single.bed.gz
137.71 kB
m6a-786o-20180420-jufastqgz_unmapped_reads_single.bed.gz
151.87 kB
m6a-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
591.15 kB
m6a-786o-20180420-jufastqgz_unmapped_skipped.bam
3.93 kB
m6a-786o-20180420-jufastqgz_unmapped_single.bedgraph
499.81 kB
iCount reads proxy
fastqc
Directory
m6a-786o-20180420-jufastqgz_unmapped_fastqc.zip
469.69 kB
m6a-786o-20180420-jufastqgz_unmapped.fastq.gz
119.24 MB
stderr.txt
1.36 kB
Paraclu
peaks.bed.gz
548 B
STAR
m6a-786o-20180420-ju_trimmed.bam
665.59 MB
m6a-786o-20180420-ju_trimmed_unmapped.out.mate1.fastq.gz
119.24 MB
m6a-786o-20180420-ju_trimmed_stats.txt
1.79 kB
m6a-786o-20180420-ju_trimmed.bam.bai
20.56 kB
m6a-786o-20180420-ju_trimmed_SJ.out.tab
0 B
STAR
m6a-786o-20180420-jufastqgz_unmapped.bam
61.09 MB
m6a-786o-20180420-jufastqgz_unmapped.bam.bai
2.06 MB
m6a-786o-20180420-jufastqgz_unmapped_stats.txt
1.80 kB
m6a-786o-20180420-jufastqgz_unmapped.bw
25.98 kB
m6a-786o-20180420-jufastqgz_unmapped_SJ.out.tab
139.39 kB
m6a-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
17.31 MB
iCount reads proxy
fastqc
Directory
m6a-786o-20180420-jufastqgz_unmapped.fastq.gz
23.64 MB
stderr.txt
1.36 kB
m6a-786o-20180420-jufastqgz_unmapped_fastqc.zip
525.12 kB
iCount summary
m6a-786o-20180420-jufastqgz_unmapped_single_summary_type.tsv
269 B
m6a-786o-20180420-jufastqgz_unmapped_single_summary_subtype.tsv
647 B
m6a-786o-20180420-jufastqgz_unmapped_single_summary_gene.tsv
1.06 MB
STAR
m6a-786o-20180420-jufastqgz_unmapped_trimmed_unmapped.out.mate1.fastq.gz
23.64 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_stats.txt
1.81 kB
m6a-786o-20180420-jufastqgz_unmapped_trimmed.bam
661.38 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_SJ.out.tab
751.17 kB
m6a-786o-20180420-jufastqgz_unmapped_trimmed.bam.bai
4.88 MB
iCount xlsites
m6a-786o-20180420-jufastqgz_unmapped_trimmed_single.bed.gz
2.57 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_skipped.bam
2.93 kB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_singleAndMulti.bed.gz
8.85 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_single.bedgraph
11.74 MB
m6a-786o-20180420-jufastqgz_unmapped_trimmed_reads_single.bed.gz
2.97 MB
iCount RNA-maps
results.tar.gz
1.64 MB
iCount xlsites
m6a-786o-20180420-jufastqgz_unmapped_single.bed.gz
2.39 MB
m6a-786o-20180420-jufastqgz_unmapped_single.bedgraph
10.94 MB
m6a-786o-20180420-jufastqgz_unmapped_skipped.bam
3.98 kB
m6a-786o-20180420-jufastqgz_unmapped_singleAndMulti.bed.gz
5.70 MB
STAR
m6a-786o-20180420-jufastqgz_unmapped_unmapped.out.mate1.fastq.gz
40.08 MB
m6a-786o-20180420-jufastqgz_unmapped.bam
238.26 MB
m6a-786o-20180420-jufastqgz_unmapped_stats.txt
1.81 kB
m6a-786o-20180420-jufastqgz_unmapped_SJ.out.tab
849.76 kB
m6a-786o-20180420-jufastqgz_unmapped.bw
41.52 kB
m6a-786o-20180420-jufastqgz_unmapped.bam.bai
4.13 MB
iCount xlsites
m6a-786o-20180420-ju_trimmed_skipped.bam
3.97 kB
m6a-786o-20180420-ju_trimmed_single.bedgraph
190 B
m6a-786o-20180420-ju_trimmed_singleAndMulti.bed.gz
168.59 kB
m6a-786o-20180420-ju_trimmed_single.bed.gz
93.02 kB
Cutadapt (single-end)
report.txt
689 B
fastqc
Directory
m6a-786o-20180420-ju_trimmed_fastqc.zip
477.03 kB
m6a-786o-20180420-ju_trimmed.fastq.gz
405.44 MB

m62A_786O_Ctrl 4H_20180413_JU

Reads (single-end)
fastqc
Directory
demux_NNNNCAGAANNN.fastq.gz
385.74 MB
stderr.txt
975 B
demux_NNNNCAGAANNN_fastqc.zip
473.27 kB
STAR
demux_NNNNCAGAANNN_unmapped.out.mate1.fastq.gz
130.68 MB
demux_NNNNCAGAANNN_stats.txt
1.81 kB
demux_NNNNCAGAANNN.bam
2.24 GB
demux_NNNNCAGAANNN_SJ.out.tab
162.30 kB
demux_NNNNCAGAANNN.bam.bai
3.84 MB
iCount peaks
demux_NNNNCAGAANNN_unique_scores.tsv.gz
392.58 kB
demux_NNNNCAGAANNN_unique_peaks.bedgraph
121.91 kB
demux_NNNNCAGAANNN_unique_peaks.bed.gz
57.43 kB
iCount summary
demux_NNNNCAGAANNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNCAGAANNN_unique_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNCAGAANNN_unique_summary.tsv_summary_gene.tsv
574.65 kB
iCount xlsites
demux_NNNNCAGAANNN_skipped.bam
9.59 MB
demux_NNNNCAGAANNN_unique.bed.gz
320.98 kB
demux_NNNNCAGAANNN_unique.bedgraph
1.21 MB
demux_NNNNCAGAANNN_multi.bed.gz
1.76 MB

m1A_786O_NoQ plus DM-Akg 15min_20180413_JU_2

iCount summary
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_gene.tsv
111.45 kB
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_subtype.tsv
635 B
demux_NNNNCAGGGNNN_unique_summary.tsv_summary_type.tsv
261 B
iCount peaks
demux_NNNNCAGGGNNN_unique_scores.tsv.gz
73.41 kB
demux_NNNNCAGGGNNN_unique_peaks.bedgraph
31.90 kB
demux_NNNNCAGGGNNN_unique_peaks.bed.gz
15.62 kB
STAR
demux_NNNNCAGGGNNN.bam.bai
1.89 MB
demux_NNNNCAGGGNNN.bam
272.19 MB
demux_NNNNCAGGGNNN_unmapped.out.mate1.fastq.gz
36.34 MB
demux_NNNNCAGGGNNN_stats.txt
1.81 kB
demux_NNNNCAGGGNNN_SJ.out.tab
22.49 kB
Reads (single-end)
demux_NNNNCAGGGNNN.fastq.gz
74.94 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNCAGGGNNN_fastqc.zip
469.43 kB
iCount xlsites
demux_NNNNCAGGGNNN_multi.bed.gz
479.25 kB
demux_NNNNCAGGGNNN_skipped.bam
1.55 MB
demux_NNNNCAGGGNNN_unique.bedgraph
218.29 kB
demux_NNNNCAGGGNNN_unique.bed.gz
60.06 kB

m1A_786O_NoQ plus DM-Akg 4H_20180413_JU_2

Reads (single-end)
stderr.txt
975 B
demux_NNNNTCGAGNNN.fastq.gz
68.48 MB
fastqc
Directory
demux_NNNNTCGAGNNN_fastqc.zip
459.49 kB
iCount summary
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_gene.tsv
106.39 kB
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNTCGAGNNN_unique_summary.tsv_summary_type.tsv
263 B
iCount xlsites
demux_NNNNTCGAGNNN_skipped.bam
1.34 MB
demux_NNNNTCGAGNNN_multi.bed.gz
464.09 kB
demux_NNNNTCGAGNNN_unique.bed.gz
54.57 kB
demux_NNNNTCGAGNNN_unique.bedgraph
199.11 kB
STAR
demux_NNNNTCGAGNNN_unmapped.out.mate1.fastq.gz
32.97 MB
demux_NNNNTCGAGNNN.bam.bai
1.83 MB
demux_NNNNTCGAGNNN.bam
262.14 MB
demux_NNNNTCGAGNNN_SJ.out.tab
23.25 kB
demux_NNNNTCGAGNNN_stats.txt
1.81 kB
iCount peaks
demux_NNNNTCGAGNNN_unique_scores.tsv.gz
67.35 kB
demux_NNNNTCGAGNNN_unique_peaks.bed.gz
13.31 kB
demux_NNNNTCGAGNNN_unique_peaks.bedgraph
27.45 kB

m1A_786O_Ctrl 15min_20180413_JU_2

iCount summary
demux_NNNNATCTGNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNATCTGNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNATCTGNNN_unique_summary.tsv_summary_gene.tsv
112.78 kB
STAR
demux_NNNNATCTGNNN.bam
193.02 MB
demux_NNNNATCTGNNN_stats.txt
1.81 kB
demux_NNNNATCTGNNN_unmapped.out.mate1.fastq.gz
24.07 MB
demux_NNNNATCTGNNN_SJ.out.tab
20.65 kB
demux_NNNNATCTGNNN.bam.bai
1.83 MB
Reads (single-end)
demux_NNNNATCTGNNN_fastqc.zip
487.40 kB
fastqc
Directory
stderr.txt
975 B
demux_NNNNATCTGNNN.fastq.gz
52.59 MB
iCount xlsites
demux_NNNNATCTGNNN_unique.bed.gz
54.50 kB
demux_NNNNATCTGNNN_multi.bed.gz
467.53 kB
demux_NNNNATCTGNNN_skipped.bam
1.03 MB
demux_NNNNATCTGNNN_unique.bedgraph
197.02 kB
iCount peaks
demux_NNNNATCTGNNN_unique_peaks.bedgraph
25.61 kB
demux_NNNNATCTGNNN_unique_scores.tsv.gz
68.98 kB
demux_NNNNATCTGNNN_unique_peaks.bed.gz
12.90 kB

Copy of m1A_786O:wtVHL__20180420_JU

Reads (single-end)
demux_NNNNATCCANNN.fastq.gz
264.75 MB
stderr.txt
975 B
fastqc
Directory
demux_NNNNATCCANNN_fastqc.zip
452.57 kB

m6A_786O_NoQ plus DM-Akg 15min_20180413_JU

Reads (single-end)
demux_NNNNTCATCNNN_fastqc.zip
483.90 kB
fastqc
Directory
demux_NNNNTCATCNNN.fastq.gz
370.15 MB
stderr.txt
975 B
iCount summary
demux_NNNNTCATCNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNTCATCNNN_unique_summary.tsv_summary_gene.tsv
657.04 kB
demux_NNNNTCATCNNN_unique_summary.tsv_summary_subtype.tsv
641 B
iCount peaks
demux_NNNNTCATCNNN_unique_scores.tsv.gz
486.84 kB
demux_NNNNTCATCNNN_unique_peaks.bed.gz
74.96 kB
demux_NNNNTCATCNNN_unique_peaks.bedgraph
150.51 kB
STAR
demux_NNNNTCATCNNN.bam.bai
3.84 MB
demux_NNNNTCATCNNN_unmapped.out.mate1.fastq.gz
93.48 MB
demux_NNNNTCATCNNN.bam
2.35 GB
demux_NNNNTCATCNNN_stats.txt
1.81 kB
demux_NNNNTCATCNNN_SJ.out.tab
182.95 kB
iCount xlsites
demux_NNNNTCATCNNN_multi.bed.gz
1.80 MB
demux_NNNNTCATCNNN_unique.bed.gz
411.90 kB
demux_NNNNTCATCNNN_unique.bedgraph
1.61 MB
demux_NNNNTCATCNNN_skipped.bam
6.87 MB

m1A_786O_Ctrl 3min_20180413_JU

Reads (single-end)
fastqc
Directory
demux_NNNNTGTATNNN.fastq.gz
82.59 MB
demux_NNNNTGTATNNN_fastqc.zip
486.00 kB
stderr.txt
975 B
STAR
demux_NNNNTGTATNNN.bam
294.34 MB
demux_NNNNTGTATNNN_unmapped.out.mate1.fastq.gz
38.53 MB
demux_NNNNTGTATNNN_stats.txt
1.81 kB
demux_NNNNTGTATNNN_SJ.out.tab
17.30 kB
demux_NNNNTGTATNNN.bam.bai
1.84 MB
iCount xlsites
demux_NNNNTGTATNNN_skipped.bam
1.55 MB
demux_NNNNTGTATNNN_multi.bed.gz
405.60 kB
demux_NNNNTGTATNNN_unique.bed.gz
50.86 kB
demux_NNNNTGTATNNN_unique.bedgraph
183.73 kB
iCount peaks
demux_NNNNTGTATNNN_unique_peaks.bed.gz
12.99 kB
demux_NNNNTGTATNNN_unique_scores.tsv.gz
62.53 kB
demux_NNNNTGTATNNN_unique_peaks.bedgraph
26.58 kB
iCount summary
demux_NNNNTGTATNNN_unique_summary.tsv_summary_gene.tsv
91.94 kB
demux_NNNNTGTATNNN_unique_summary.tsv_summary_subtype.tsv
622 B
demux_NNNNTGTATNNN_unique_summary.tsv_summary_type.tsv
259 B

m6A_NoQ_+_DM-Akg_24H_20180106_JU

Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNGTAACNNN_fastqc.zip
423.83 kB
demux_NNNNGTAACNNN.fastq.gz
138.95 MB
iCount xlsites
demux_NNNNGTAACNNN_unique.bed.gz
2.52 MB
demux_NNNNGTAACNNN_skipped.bam
9.77 MB
demux_NNNNGTAACNNN_multi.bed.gz
5.97 MB
STAR
demux_NNNNGTAACNNN.bam
1.13 GB
demux_NNNNGTAACNNN.bam.bai
4.41 MB
demux_NNNNGTAACNNN_SJ.out.tab
1.31 MB
demux_NNNNGTAACNNN_stats.txt
1.80 kB
demux_NNNNGTAACNNN_unmapped.out.mate1.fastq.gz
15.70 MB

demux_nomatch.fastq.gz

Reads (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
10.66 GB
stderr.txt
875 B
demux_nomatch_fastqc.zip
479.30 kB

m6A_NoQ_+_DM-Akg_4H_20180106_JU

STAR
demux_NNNNAGTCCNNN_stats.txt
1.81 kB
demux_NNNNAGTCCNNN_unmapped.out.mate1.fastq.gz
20.01 MB
demux_NNNNAGTCCNNN.bam.bai
4.57 MB
demux_NNNNAGTCCNNN_SJ.out.tab
1.11 MB
demux_NNNNAGTCCNNN.bam
1.09 GB
Reads (single-end)
fastqc
Directory
demux_NNNNAGTCCNNN.fastq.gz
143.05 MB
demux_NNNNAGTCCNNN_fastqc.zip
473.08 kB
stderr.txt
975 B
iCount xlsites
demux_NNNNAGTCCNNN_skipped.bam
8.57 MB
demux_NNNNAGTCCNNN_multi.bed.gz
6.14 MB
demux_NNNNAGTCCNNN_unique.bed.gz
2.36 MB

m6A_NoQ_+_DM-Akg_3'_20180106_JU

Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNCACAGNNN.fastq.gz
94.96 MB
demux_NNNNCACAGNNN_fastqc.zip
417.67 kB
STAR
demux_NNNNCACAGNNN.bam.bai
4.20 MB
demux_NNNNCACAGNNN.bam
772.88 MB
demux_NNNNCACAGNNN_unmapped.out.mate1.fastq.gz
11.81 MB
demux_NNNNCACAGNNN_SJ.out.tab
697.97 kB
demux_NNNNCACAGNNN_stats.txt
1.80 kB
iCount xlsites
demux_NNNNCACAGNNN_skipped.bam
5.53 MB
demux_NNNNCACAGNNN_unique.bed.gz
1.37 MB
demux_NNNNCACAGNNN_multi.bed.gz
3.96 MB

m6A_NoQ_24H_20180106_JU

STAR
demux_NNNNCATACNNN_unmapped.out.mate1.fastq.gz
13.58 MB
demux_NNNNCATACNNN.bam
982.54 MB
demux_NNNNCATACNNN.bam.bai
4.23 MB
demux_NNNNCATACNNN_stats.txt
1.80 kB
demux_NNNNCATACNNN_SJ.out.tab
1.05 MB
Reads (single-end)
demux_NNNNCATACNNN.fastq.gz
116.88 MB
fastqc
Directory
demux_NNNNCATACNNN_fastqc.zip
425.31 kB
stderr.txt
975 B
iCount xlsites
demux_NNNNCATACNNN_skipped.bam
7.92 MB
demux_NNNNCATACNNN_unique.bed.gz
2.04 MB
demux_NNNNCATACNNN_multi.bed.gz
4.98 MB

m6A_Ctrl_4H_20180106_JU

STAR
demux_NNNNCCTGCNNN.bam
1.08 GB
demux_NNNNCCTGCNNN_SJ.out.tab
1.02 MB
demux_NNNNCCTGCNNN_stats.txt
1.80 kB
demux_NNNNCCTGCNNN.bam.bai
4.42 MB
demux_NNNNCCTGCNNN_unmapped.out.mate1.fastq.gz
17.10 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCCTGCNNN.fastq.gz
136.75 MB
stderr.txt
975 B
demux_NNNNCCTGCNNN_fastqc.zip
419.55 kB
iCount xlsites
demux_NNNNCCTGCNNN_skipped.bam
8.27 MB
demux_NNNNCCTGCNNN_multi.bed.gz
5.21 MB
demux_NNNNCCTGCNNN_unique.bed.gz
2.06 MB

m6A_NoQ_3'_20180106_JU

iCount xlsites
demux_NNNNTCGAGNNN_skipped.bam
3.77 MB
demux_NNNNTCGAGNNN_unique.bed.gz
1.10 MB
demux_NNNNTCGAGNNN_multi.bed.gz
3.45 MB
STAR
demux_NNNNTCGAGNNN_unmapped.out.mate1.fastq.gz
10.24 MB
demux_NNNNTCGAGNNN.bam
548.69 MB
demux_NNNNTCGAGNNN_stats.txt
1.80 kB
demux_NNNNTCGAGNNN_SJ.out.tab
524.25 kB
demux_NNNNTCGAGNNN.bam.bai
4.05 MB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNTCGAGNNN.fastq.gz
69.97 MB
demux_NNNNTCGAGNNN_fastqc.zip
426.06 kB

m6A_NoQ_+_DM-Akg_15'_20180106_JU

Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCATCNNN.fastq.gz
49.22 MB
demux_NNNNTCATCNNN_fastqc.zip
442.00 kB
STAR
demux_NNNNTCATCNNN.bam.bai
2.01 MB
demux_NNNNTCATCNNN.bam
311.82 MB
demux_NNNNTCATCNNN_SJ.out.tab
30.04 kB
demux_NNNNTCATCNNN_stats.txt
1.80 kB
demux_NNNNTCATCNNN_unmapped.out.mate1.fastq.gz
6.17 MB
iCount xlsites
demux_NNNNTCATCNNN_skipped.bam
1.50 MB
demux_NNNNTCATCNNN_unique.bed.gz
52.87 kB
demux_NNNNTCATCNNN_multi.bed.gz
489.29 kB

m6A_Ctrl_3'_20180106_JU

iCount xlsites
demux_NNNNATACGNNN_multi.bed.gz
3.11 MB
demux_NNNNATACGNNN_skipped.bam
3.47 MB
demux_NNNNATACGNNN_unique.bed.gz
983.76 kB
STAR
demux_NNNNATACGNNN.bam.bai
3.91 MB
demux_NNNNATACGNNN_stats.txt
1.80 kB
demux_NNNNATACGNNN_SJ.out.tab
485.67 kB
demux_NNNNATACGNNN.bam
537.41 MB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
9.05 MB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNATACGNNN.fastq.gz
66.26 MB
demux_NNNNATACGNNN_fastqc.zip
431.33 kB
iCount annotate
demux_NNNNATACGNNN_unique_annotated.bed.gz
1.39 MB
demux_NNNNATACGNNN_unique_annotated.bedgraph
4.27 MB
iCount peaks
demux_NNNNATACGNNN_unique_peaks.bed.gz
87.40 kB
demux_NNNNATACGNNN_unique_peaks.bedgraph
260.81 kB
demux_NNNNATACGNNN_unique_scores.tsv.gz
977.27 kB

DBR1_siCtrl Sample2_20180223_JU

STAR
demux_NNNNTATGANNN.bam
301.91 MB
demux_NNNNTATGANNN_stats.txt
1.81 kB
demux_NNNNTATGANNN_unmapped.out.mate1.fastq.gz
44.88 MB
demux_NNNNTATGANNN_SJ.out.tab
57.57 kB
demux_NNNNTATGANNN.bam.bai
2.73 MB
iCount summary
demux_NNNNTATGANNN_unique_summary.tsv_summary_subtype.tsv
627 B
demux_NNNNTATGANNN_unique_summary.tsv_summary_gene.tsv
428.49 kB
demux_NNNNTATGANNN_unique_summary.tsv_summary_type.tsv
262 B
iCount xlsites
demux_NNNNTATGANNN_unique.bed.gz
212.66 kB
demux_NNNNTATGANNN_multi.bed.gz
790.22 kB
demux_NNNNTATGANNN_skipped.bam
1.59 MB
demux_NNNNTATGANNN_unique.bedgraph
785.88 kB

Input_NoQ_2_plus DM-Akg 4hrs_20180223_JU

iCount summary
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_gene.tsv
318.03 kB
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNGCTTGCGTNNNNN_unique_summary.tsv_summary_type.tsv
264 B
STAR
demux_NNNNGCTTGCGTNNNNN.bam.bai
2.69 MB
demux_NNNNGCTTGCGTNNNNN_unmapped.out.mate1.fastq.gz
5.80 MB
demux_NNNNGCTTGCGTNNNNN.bam
105.23 MB
demux_NNNNGCTTGCGTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGCGTNNNNN_SJ.out.tab
45.41 kB
iCount xlsites
demux_NNNNGCTTGCGTNNNNN_unique.bed.gz
129.79 kB
demux_NNNNGCTTGCGTNNNNN_multi.bed.gz
1.11 MB
demux_NNNNGCTTGCGTNNNNN_skipped.bam
403.22 kB
demux_NNNNGCTTGCGTNNNNN_unique.bedgraph
464.91 kB
Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNGCTTGCGTNNNNN_fastqc.zip
415.91 kB
demux_NNNNGCTTGCGTNNNNN.fastq.gz
17.80 MB

IgG_786O_Mouse IgG_20180413_JU

iCount xlsites
demux_NNNNCCGGANNN_unique.bed.gz
135.99 kB
demux_NNNNCCGGANNN_skipped.bam
1004.89 kB
demux_NNNNCCGGANNN_unique.bedgraph
515.58 kB
demux_NNNNCCGGANNN_multi.bed.gz
878.12 kB
iCount summary
demux_NNNNCCGGANNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_gene.tsv
355.28 kB
demux_NNNNCCGGANNN_unique_summary.tsv_summary_type.tsv
263 B
Reads (single-end)
demux_NNNNCCGGANNN.fastq.gz
27.41 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNCCGGANNN_fastqc.zip
452.50 kB
STAR
demux_NNNNCCGGANNN_stats.txt
1.80 kB
demux_NNNNCCGGANNN_SJ.out.tab
71.82 kB
demux_NNNNCCGGANNN.bam
169.29 MB
demux_NNNNCCGGANNN.bam.bai
2.19 MB
demux_NNNNCCGGANNN_unmapped.out.mate1.fastq.gz
8.98 MB
iCount peaks
demux_NNNNCCGGANNN_unique_peaks.bedgraph
24.67 kB
demux_NNNNCCGGANNN_unique_scores.tsv.gz
183.60 kB
demux_NNNNCCGGANNN_unique_peaks.bed.gz
11.72 kB

m1A_786O_NoQ plus DM-Akg 15min_20180413_JU

iCount peaks
demux_NNNNGTAACNNN_unique_peaks.bed.gz
61.64 kB
demux_NNNNGTAACNNN_unique_peaks.bedgraph
138.09 kB
demux_NNNNGTAACNNN_unique_scores.tsv.gz
352.17 kB
iCount summary
demux_NNNNGTAACNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNGTAACNNN_unique_summary.tsv_summary_gene.tsv
487.18 kB
demux_NNNNGTAACNNN_unique_summary.tsv_summary_subtype.tsv
647 B
Reads (single-end)
fastqc
Directory
demux_NNNNGTAACNNN_fastqc.zip
482.04 kB
demux_NNNNGTAACNNN.fastq.gz
271.16 MB
stderr.txt
975 B
iCount xlsites
demux_NNNNGTAACNNN_skipped.bam
5.41 MB
demux_NNNNGTAACNNN_unique.bed.gz
294.66 kB
demux_NNNNGTAACNNN_unique.bedgraph
1.11 MB
demux_NNNNGTAACNNN_multi.bed.gz
1.57 MB
STAR
demux_NNNNGTAACNNN.bam.bai
3.03 MB
demux_NNNNGTAACNNN_unmapped.out.mate1.fastq.gz
115.88 MB
demux_NNNNGTAACNNN.bam
1.12 GB
demux_NNNNGTAACNNN_stats.txt
1.81 kB
demux_NNNNGTAACNNN_SJ.out.tab
153.05 kB

m1A_786O_NoQ 15min_20180413_JU

STAR
demux_NNNNCATACNNN_unmapped.out.mate1.fastq.gz
147.68 MB
demux_NNNNCATACNNN.bam
1.42 GB
demux_NNNNCATACNNN_SJ.out.tab
178.60 kB
demux_NNNNCATACNNN.bam.bai
3.24 MB
demux_NNNNCATACNNN_stats.txt
1.81 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCATACNNN_fastqc.zip
473.18 kB
demux_NNNNCATACNNN.fastq.gz
345.97 MB
stderr.txt
975 B
iCount summary
demux_NNNNCATACNNN_unique_summary.tsv_summary_subtype.tsv
644 B
demux_NNNNCATACNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNCATACNNN_unique_summary.tsv_summary_gene.tsv
538.35 kB
iCount peaks
demux_NNNNCATACNNN_unique_peaks.bedgraph
159.49 kB
demux_NNNNCATACNNN_unique_scores.tsv.gz
398.70 kB
demux_NNNNCATACNNN_unique_peaks.bed.gz
71.13 kB
iCount xlsites
demux_NNNNCATACNNN_skipped.bam
7.07 MB
demux_NNNNCATACNNN_multi.bed.gz
1.73 MB
demux_NNNNCATACNNN_unique.bedgraph
1.28 MB
demux_NNNNCATACNNN_unique.bed.gz
338.17 kB

IgG_786O_Mouse IgG_20180413_JU_2

iCount peaks
demux_NNNNCACAGNNN_unique_peaks.bed.gz
29.74 kB
demux_NNNNCACAGNNN_unique_peaks.bedgraph
51.85 kB
demux_NNNNCACAGNNN_unique_scores.tsv.gz
140.75 kB
STAR
demux_NNNNCACAGNNN_unmapped.out.mate1.fastq.gz
81.90 MB
demux_NNNNCACAGNNN_stats.txt
1.81 kB
demux_NNNNCACAGNNN.bam
1.72 GB
demux_NNNNCACAGNNN.bam.bai
2.26 MB
demux_NNNNCACAGNNN_SJ.out.tab
51.17 kB
iCount summary
demux_NNNNCACAGNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNCACAGNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNCACAGNNN_unique_summary.tsv_summary_gene.tsv
267.03 kB
iCount xlsites
demux_NNNNCACAGNNN_multi.bed.gz
799.14 kB
demux_NNNNCACAGNNN_unique.bed.gz
103.91 kB
demux_NNNNCACAGNNN_unique.bedgraph
374.93 kB
demux_NNNNCACAGNNN_skipped.bam
4.90 MB
Reads (single-end)
demux_NNNNCACAGNNN.fastq.gz
318.03 MB
fastqc
Directory
demux_NNNNCACAGNNN_fastqc.zip
423.69 kB
stderr.txt
975 B

m1A_786O_NoQ 4H_20180413_JU_2

Reads (single-end)
fastqc
Directory
demux_NNNNATACGNNN_fastqc.zip
455.96 kB
demux_NNNNATACGNNN.fastq.gz
82.90 MB
stderr.txt
975 B
STAR
demux_NNNNATACGNNN.bam
318.05 MB
demux_NNNNATACGNNN.bam.bai
1.93 MB
demux_NNNNATACGNNN_stats.txt
1.81 kB
demux_NNNNATACGNNN_SJ.out.tab
27.12 kB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
39.84 MB
iCount xlsites
demux_NNNNATACGNNN_unique.bed.gz
64.24 kB
demux_NNNNATACGNNN_skipped.bam
1.79 MB
demux_NNNNATACGNNN_multi.bed.gz
533.57 kB
demux_NNNNATACGNNN_unique.bedgraph
235.41 kB
iCount peaks
demux_NNNNATACGNNN_unique_peaks.bed.gz
16.19 kB
demux_NNNNATACGNNN_unique_peaks.bedgraph
34.14 kB
demux_NNNNATACGNNN_unique_scores.tsv.gz
79.50 kB
iCount summary
demux_NNNNATACGNNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNATACGNNN_unique_summary.tsv_summary_gene.tsv
123.01 kB

Input_Control 15min_20180223_JU

iCount xlsites
demux_NNNNGAATANNN_unique.bed.gz
406.21 kB
demux_NNNNGAATANNN_skipped.bam
1.21 MB
demux_NNNNGAATANNN_multi.bed.gz
2.34 MB
demux_NNNNGAATANNN_unique.bedgraph
1.55 MB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGAATANNN.fastq.gz
62.85 MB
demux_NNNNGAATANNN_fastqc.zip
475.66 kB
STAR
demux_NNNNGAATANNN.bam.bai
3.70 MB
demux_NNNNGAATANNN_unmapped.out.mate1.fastq.gz
31.38 MB
demux_NNNNGAATANNN_stats.txt
1.80 kB
demux_NNNNGAATANNN_SJ.out.tab
144.70 kB
demux_NNNNGAATANNN.bam
358.81 MB
iCount summary
demux_NNNNGAATANNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNGAATANNN_unique_summary.tsv_summary_gene.tsv
658.28 kB
demux_NNNNGAATANNN_unique_summary.tsv_summary_subtype.tsv
637 B

Input_Control 24hrs_20180223_JU

iCount summary
demux_NNNNCAAGTNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAAGTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
639 B
demux_NNNNCAAGTNNN_trimmed_single_summary.tsv_summary_gene.tsv
647.28 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAAGTNNN.fastq.gz
45.02 MB
demux_NNNNCAAGTNNN_fastqc.zip
468.59 kB
stderr.txt
975 B
iCount xlsites
demux_NNNNCAAGTNNN_trimmed_single.bedgraph
1.46 MB
demux_NNNNCAAGTNNN_trimmed_skipped.bam
3.09 kB
demux_NNNNCAAGTNNN_trimmed_singleAndMulti.bed.gz
2.14 MB
demux_NNNNCAAGTNNN_trimmed_single.bed.gz
384.65 kB
STAR
demux_NNNNCAAGTNNN_trimmed_unmapped.out.mate1.fastq.gz
13.20 MB
demux_NNNNCAAGTNNN_trimmed.bam.bai
3.48 MB
demux_NNNNCAAGTNNN_trimmed_SJ.out.tab
142.83 kB
demux_NNNNCAAGTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCAAGTNNN_trimmed.bam
288.14 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNCAAGTNNN_trimmed.fastq.gz
42.04 MB
demux_NNNNCAAGTNNN_trimmed_fastqc.zip
437.16 kB

Input_NoQ_2_4hrs_20180223_JU

STAR
demux_NNNNGCTTGCTGNNNNN_unmapped.out.mate1.fastq.gz
5.81 MB
demux_NNNNGCTTGCTGNNNNN.bam
106.90 MB
demux_NNNNGCTTGCTGNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGCTGNNNNN_SJ.out.tab
48.25 kB
demux_NNNNGCTTGCTGNNNNN.bam.bai
2.62 MB
iCount xlsites
demux_NNNNGCTTGCTGNNNNN_skipped.bam
429.10 kB
demux_NNNNGCTTGCTGNNNNN_unique.bed.gz
123.37 kB
demux_NNNNGCTTGCTGNNNNN_unique.bedgraph
441.47 kB
demux_NNNNGCTTGCTGNNNNN_multi.bed.gz
1.08 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGCTGNNNNN_fastqc.zip
405.60 kB
demux_NNNNGCTTGCTGNNNNN.fastq.gz
17.87 MB
stderr.txt
1.05 kB
iCount summary
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_subtype.tsv
629 B
demux_NNNNGCTTGCTGNNNNN_unique_summary.tsv_summary_gene.tsv
300.96 kB

m62A_786O_NoQ plus DM-Akg 15min_20180413_JU

iCount summary
demux_NNNNTCACANNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNTCACANNN_unique_summary.tsv_summary_gene.tsv
535.83 kB
demux_NNNNTCACANNN_unique_summary.tsv_summary_type.tsv
265 B
iCount peaks
demux_NNNNTCACANNN_unique_scores.tsv.gz
354.89 kB
demux_NNNNTCACANNN_unique_peaks.bed.gz
48.44 kB
demux_NNNNTCACANNN_unique_peaks.bedgraph
101.72 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTCACANNN.fastq.gz
325.39 MB
stderr.txt
975 B
demux_NNNNTCACANNN_fastqc.zip
462.28 kB
STAR
demux_NNNNTCACANNN.bam.bai
3.55 MB
demux_NNNNTCACANNN_stats.txt
1.81 kB
demux_NNNNTCACANNN_unmapped.out.mate1.fastq.gz
108.06 MB
demux_NNNNTCACANNN.bam
1.88 GB
demux_NNNNTCACANNN_SJ.out.tab
149.30 kB
iCount xlsites
demux_NNNNTCACANNN_skipped.bam
9.32 MB
demux_NNNNTCACANNN_unique.bed.gz
286.10 kB
demux_NNNNTCACANNN_unique.bedgraph
1.08 MB
demux_NNNNTCACANNN_multi.bed.gz
1.53 MB

m6A_786O_NoQ 15min_20180413_JU

iCount summary
demux_NNNNAACTCNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNAACTCNNN_unique_summary.tsv_summary_gene.tsv
644.84 kB
demux_NNNNAACTCNNN_unique_summary.tsv_summary_subtype.tsv
642 B
iCount xlsites
demux_NNNNAACTCNNN_unique.bedgraph
1.54 MB
demux_NNNNAACTCNNN_unique.bed.gz
396.80 kB
demux_NNNNAACTCNNN_skipped.bam
6.64 MB
demux_NNNNAACTCNNN_multi.bed.gz
1.77 MB
iCount peaks
demux_NNNNAACTCNNN_unique_peaks.bed.gz
65.14 kB
demux_NNNNAACTCNNN_unique_scores.tsv.gz
470.87 kB
demux_NNNNAACTCNNN_unique_peaks.bedgraph
131.57 kB
Reads (single-end)
demux_NNNNAACTCNNN.fastq.gz
343.90 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNAACTCNNN_fastqc.zip
472.76 kB
STAR
demux_NNNNAACTCNNN.bam.bai
3.82 MB
demux_NNNNAACTCNNN.bam
2.17 GB
demux_NNNNAACTCNNN_unmapped.out.mate1.fastq.gz
90.98 MB
demux_NNNNAACTCNNN_SJ.out.tab
176.80 kB
demux_NNNNAACTCNNN_stats.txt
1.81 kB

Input_Control-for-NoMet 15min_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNATCTGATTNNNNN.fastq.gz
42.12 MB
demux_NNNNATCTGATTNNNNN_fastqc.zip
397.11 kB
stderr.txt
1.05 kB
iCount xlsites
demux_NNNNATCTGATTNNNNN_skipped.bam
794.65 kB
demux_NNNNATCTGATTNNNNN_unique.bed.gz
206.67 kB
demux_NNNNATCTGATTNNNNN_unique.bedgraph
760.44 kB
demux_NNNNATCTGATTNNNNN_multi.bed.gz
1.55 MB
iCount summary
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
445.83 kB
demux_NNNNATCTGATTNNNNN_unique_summary.tsv_summary_type.tsv
263 B
STAR
demux_NNNNATCTGATTNNNNN_unmapped.out.mate1.fastq.gz
19.16 MB
demux_NNNNATCTGATTNNNNN.bam.bai
3.10 MB
demux_NNNNATCTGATTNNNNN.bam
217.82 MB
demux_NNNNATCTGATTNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGATTNNNNN_SJ.out.tab
80.58 kB

m1A_786O_NoQ 4H_20180413_JU

iCount summary
demux_NNNNCTGTANNN_unique_summary.tsv_summary_gene.tsv
431.81 kB
demux_NNNNCTGTANNN_unique_summary.tsv_summary_subtype.tsv
645 B
demux_NNNNCTGTANNN_unique_summary.tsv_summary_type.tsv
267 B
iCount xlsites
demux_NNNNCTGTANNN_unique.bed.gz
249.08 kB
demux_NNNNCTGTANNN_unique.bedgraph
948.03 kB
demux_NNNNCTGTANNN_multi.bed.gz
1.39 MB
demux_NNNNCTGTANNN_skipped.bam
4.28 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCTGTANNN.fastq.gz
197.30 MB
stderr.txt
975 B
demux_NNNNCTGTANNN_fastqc.zip
462.31 kB
iCount peaks
demux_NNNNCTGTANNN_unique_peaks.bed.gz
55.74 kB
demux_NNNNCTGTANNN_unique_scores.tsv.gz
300.22 kB
demux_NNNNCTGTANNN_unique_peaks.bedgraph
122.77 kB
STAR
demux_NNNNCTGTANNN_unmapped.out.mate1.fastq.gz
83.86 MB
demux_NNNNCTGTANNN.bam.bai
2.83 MB
demux_NNNNCTGTANNN.bam
812.06 MB
demux_NNNNCTGTANNN_SJ.out.tab
119.83 kB
demux_NNNNCTGTANNN_stats.txt
1.81 kB

Input_Control_2_15min_20180223_JU

iCount summary
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_subtype.tsv
633 B
demux_NNNNGCTTGATTNNNNN_unique_summary.tsv_summary_gene.tsv
390.50 kB
STAR
demux_NNNNGCTTGATTNNNNN_stats.txt
1.80 kB
demux_NNNNGCTTGATTNNNNN_unmapped.out.mate1.fastq.gz
18.34 MB
demux_NNNNGCTTGATTNNNNN.bam.bai
2.91 MB
demux_NNNNGCTTGATTNNNNN.bam
186.17 MB
demux_NNNNGCTTGATTNNNNN_SJ.out.tab
65.58 kB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGATTNNNNN.fastq.gz
37.61 MB
demux_NNNNGCTTGATTNNNNN_fastqc.zip
400.44 kB
stderr.txt
1.05 kB
iCount xlsites
demux_NNNNGCTTGATTNNNNN_skipped.bam
664.59 kB
demux_NNNNGCTTGATTNNNNN_unique.bedgraph
613.50 kB
demux_NNNNGCTTGATTNNNNN_unique.bed.gz
168.64 kB
demux_NNNNGCTTGATTNNNNN_multi.bed.gz
1.35 MB

m1A_786O_Ctrl 4H_20180413_JU

STAR
demux_NNNNAGTTANNN.bam
1.53 GB
demux_NNNNAGTTANNN.bam.bai
3.35 MB
demux_NNNNAGTTANNN_unmapped.out.mate1.fastq.gz
157.85 MB
demux_NNNNAGTTANNN_stats.txt
1.81 kB
demux_NNNNAGTTANNN_SJ.out.tab
206.54 kB
iCount peaks
demux_NNNNAGTTANNN_unique_scores.tsv.gz
450.52 kB
demux_NNNNAGTTANNN_unique_peaks.bed.gz
80.53 kB
demux_NNNNAGTTANNN_unique_peaks.bedgraph
183.08 kB
iCount summary
demux_NNNNAGTTANNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNAGTTANNN_unique_summary.tsv_summary_gene.tsv
589.06 kB
demux_NNNNAGTTANNN_unique_summary.tsv_summary_subtype.tsv
648 B
iCount xlsites
demux_NNNNAGTTANNN_skipped.bam
8.19 MB
demux_NNNNAGTTANNN_unique.bedgraph
1.46 MB
demux_NNNNAGTTANNN_unique.bed.gz
384.90 kB
demux_NNNNAGTTANNN_multi.bed.gz
1.92 MB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNAGTTANNN.fastq.gz
376.84 MB
demux_NNNNAGTTANNN_fastqc.zip
470.86 kB

m1A_786O_NoQ 3min_20180413_JU

STAR
demux_NNNNCTGATNNN_unmapped.out.mate1.fastq.gz
49.50 MB
demux_NNNNCTGATNNN.bam.bai
1.90 MB
demux_NNNNCTGATNNN.bam
371.98 MB
demux_NNNNCTGATNNN_stats.txt
1.81 kB
demux_NNNNCTGATNNN_SJ.out.tab
22.39 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCTGATNNN_fastqc.zip
459.90 kB
demux_NNNNCTGATNNN.fastq.gz
105.20 MB
stderr.txt
975 B
iCount summary
demux_NNNNCTGATNNN_unique_summary.tsv_summary_type.tsv
261 B
demux_NNNNCTGATNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNCTGATNNN_unique_summary.tsv_summary_gene.tsv
123.77 kB
iCount xlsites
demux_NNNNCTGATNNN_unique.bed.gz
61.40 kB
demux_NNNNCTGATNNN_skipped.bam
1.98 MB
demux_NNNNCTGATNNN_multi.bed.gz
486.20 kB
demux_NNNNCTGATNNN_unique.bedgraph
222.82 kB
iCount peaks
demux_NNNNCTGATNNN_unique_peaks.bed.gz
15.87 kB
demux_NNNNCTGATNNN_unique_peaks.bedgraph
32.08 kB
demux_NNNNCTGATNNN_unique_scores.tsv.gz
77.18 kB

m1A_786O_NoQ plus DM-Akg 3min_20180413_JU

Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGNNN.fastq.gz
88.57 MB
stderr.txt
975 B
demux_NNNNGCTTGNNN_fastqc.zip
465.24 kB
iCount summary
demux_NNNNGCTTGNNN_unique_summary.tsv_summary_type.tsv
259 B
demux_NNNNGCTTGNNN_unique_summary.tsv_summary_gene.tsv
113.85 kB
demux_NNNNGCTTGNNN_unique_summary.tsv_summary_subtype.tsv
630 B
iCount peaks
demux_NNNNGCTTGNNN_unique_scores.tsv.gz
67.95 kB
demux_NNNNGCTTGNNN_unique_peaks.bed.gz
13.05 kB
demux_NNNNGCTTGNNN_unique_peaks.bedgraph
25.39 kB
iCount xlsites
demux_NNNNGCTTGNNN_multi.bed.gz
419.46 kB
demux_NNNNGCTTGNNN_unique.bedgraph
190.05 kB
demux_NNNNGCTTGNNN_unique.bed.gz
53.14 kB
demux_NNNNGCTTGNNN_skipped.bam
1.50 MB
STAR
demux_NNNNGCTTGNNN_unmapped.out.mate1.fastq.gz
42.07 MB
demux_NNNNGCTTGNNN_SJ.out.tab
18.68 kB
demux_NNNNGCTTGNNN.bam
311.18 MB
demux_NNNNGCTTGNNN.bam.bai
1.85 MB
demux_NNNNGCTTGNNN_stats.txt
1.81 kB

m6A_786O_NoQ plusDM-Akg 4H_20180413_JU

iCount summary
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_gene.tsv
826.39 kB
demux_NNNNAGTCCNNN_unique_summary.tsv_summary_subtype.tsv
637 B
STAR
demux_NNNNAGTCCNNN.bam
2.66 GB
demux_NNNNAGTCCNNN_stats.txt
1.82 kB
demux_NNNNAGTCCNNN.bam.bai
4.44 MB
demux_NNNNAGTCCNNN_unmapped.out.mate1.fastq.gz
99.91 MB
demux_NNNNAGTCCNNN_SJ.out.tab
346.86 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAGTCCNNN.fastq.gz
403.60 MB
stderr.txt
975 B
demux_NNNNAGTCCNNN_fastqc.zip
487.55 kB
iCount peaks
demux_NNNNAGTCCNNN_unique_peaks.bed.gz
101.81 kB
demux_NNNNAGTCCNNN_unique_peaks.bedgraph
251.73 kB
demux_NNNNAGTCCNNN_unique_scores.tsv.gz
862.95 kB
iCount xlsites
demux_NNNNAGTCCNNN_skipped.bam
7.82 MB
demux_NNNNAGTCCNNN_unique.bed.gz
819.24 kB
demux_NNNNAGTCCNNN_multi.bed.gz
2.74 MB
demux_NNNNAGTCCNNN_unique.bedgraph
3.42 MB

m62A_786O_NoQ 15min_20180413_JU

Reads (single-end)
fastqc
Directory
demux_NNNNATCCANNN.fastq.gz
453.80 MB
demux_NNNNATCCANNN_fastqc.zip
458.97 kB
stderr.txt
975 B
iCount summary
demux_NNNNATCCANNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_subtype.tsv
637 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_gene.tsv
610.39 kB
STAR
demux_NNNNATCCANNN_unmapped.out.mate1.fastq.gz
142.53 MB
demux_NNNNATCCANNN.bam.bai
4.16 MB
demux_NNNNATCCANNN.bam
2.81 GB
demux_NNNNATCCANNN_stats.txt
1.81 kB
demux_NNNNATCCANNN_SJ.out.tab
202.93 kB
iCount peaks
demux_NNNNATCCANNN_unique_scores.tsv.gz
442.97 kB
demux_NNNNATCCANNN_unique_peaks.bedgraph
135.99 kB
demux_NNNNATCCANNN_unique_peaks.bed.gz
62.78 kB
iCount xlsites
demux_NNNNATCCANNN_unique.bed.gz
368.83 kB
demux_NNNNATCCANNN_unique.bedgraph
1.42 MB
demux_NNNNATCCANNN_multi.bed.gz
1.71 MB
demux_NNNNATCCANNN_skipped.bam
13.51 MB

input_Iradiated_20180223_JU

iCount xlsites
demux_NNNNTGAAANNN_skipped.bam
4.49 MB
demux_NNNNTGAAANNN_multi.bed.gz
6.89 MB
demux_NNNNTGAAANNN_unique.bedgraph
4.68 MB
demux_NNNNTGAAANNN_unique.bed.gz
1.22 MB
iCount summary
demux_NNNNTGAAANNN_unique_summary.tsv_summary_type.tsv
270 B
demux_NNNNTGAAANNN_unique_summary.tsv_summary_gene.tsv
930.51 kB
demux_NNNNTGAAANNN_unique_summary.tsv_summary_subtype.tsv
650 B
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTGAAANNN_fastqc.zip
475.11 kB
demux_NNNNTGAAANNN.fastq.gz
75.97 MB
STAR
demux_NNNNTGAAANNN.bam.bai
4.22 MB
demux_NNNNTGAAANNN_unmapped.out.mate1.fastq.gz
43.88 MB
demux_NNNNTGAAANNN_SJ.out.tab
264.46 kB
demux_NNNNTGAAANNN.bam
224.83 MB
demux_NNNNTGAAANNN_stats.txt
1.81 kB

m6A_786O_Ctrl 4H_20180413_JU

Reads (single-end)
fastqc
Directory
demux_NNNNCCTGCNNN_fastqc.zip
458.73 kB
stderr.txt
975 B
demux_NNNNCCTGCNNN.fastq.gz
240.69 MB
iCount peaks
demux_NNNNCCTGCNNN_unique_peaks.bed.gz
56.54 kB
demux_NNNNCCTGCNNN_unique_scores.tsv.gz
520.83 kB
demux_NNNNCCTGCNNN_unique_peaks.bedgraph
123.67 kB
iCount summary
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNCCTGCNNN_unique_summary.tsv_summary_gene.tsv
671.12 kB
iCount xlsites
demux_NNNNCCTGCNNN_multi.bed.gz
1.73 MB
demux_NNNNCCTGCNNN_skipped.bam
4.70 MB
demux_NNNNCCTGCNNN_unique.bed.gz
452.25 kB
demux_NNNNCCTGCNNN_unique.bedgraph
1.82 MB
STAR
demux_NNNNCCTGCNNN_unmapped.out.mate1.fastq.gz
61.65 MB
demux_NNNNCCTGCNNN.bam.bai
3.43 MB
demux_NNNNCCTGCNNN_stats.txt
1.81 kB
demux_NNNNCCTGCNNN.bam
1.58 GB
demux_NNNNCCTGCNNN_SJ.out.tab
202.32 kB

m62A_786O_Ctrl 15min_20180413_JU

iCount xlsites
demux_NNNNGTAGANNN_unique.bed.gz
402.85 kB
demux_NNNNGTAGANNN_skipped.bam
14.86 MB
demux_NNNNGTAGANNN_multi.bed.gz
2.01 MB
demux_NNNNGTAGANNN_unique.bedgraph
1.54 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGTAGANNN.fastq.gz
506.43 MB
stderr.txt
975 B
demux_NNNNGTAGANNN_fastqc.zip
426.37 kB
STAR
demux_NNNNGTAGANNN_unmapped.out.mate1.fastq.gz
169.56 MB
demux_NNNNGTAGANNN.bam
3.02 GB
demux_NNNNGTAGANNN.bam.bai
4.48 MB
demux_NNNNGTAGANNN_SJ.out.tab
212.20 kB
demux_NNNNGTAGANNN_stats.txt
1.82 kB
iCount summary
demux_NNNNGTAGANNN_unique_summary.tsv_summary_gene.tsv
640.86 kB
demux_NNNNGTAGANNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNGTAGANNN_unique_summary.tsv_summary_subtype.tsv
638 B
iCount peaks
demux_NNNNGTAGANNN_unique_peaks.bed.gz
69.41 kB
demux_NNNNGTAGANNN_unique_peaks.bedgraph
150.79 kB
demux_NNNNGTAGANNN_unique_scores.tsv.gz
478.38 kB

Input_NoMet 4hrs_20180223_JU

Reads (single-end)
stderr.txt
1.05 kB
fastqc
Directory
demux_NNNNATCTGTGCNNNNN_fastqc.zip
399.17 kB
demux_NNNNATCTGTGCNNNNN.fastq.gz
24.06 MB
iCount xlsites
demux_NNNNATCTGTGCNNNNN_multi.bed.gz
1.19 MB
demux_NNNNATCTGTGCNNNNN_skipped.bam
571.45 kB
demux_NNNNATCTGTGCNNNNN_unique.bed.gz
152.19 kB
demux_NNNNATCTGTGCNNNNN_unique.bedgraph
555.22 kB
STAR
demux_NNNNATCTGTGCNNNNN.bam.bai
2.72 MB
demux_NNNNATCTGTGCNNNNN_unmapped.out.mate1.fastq.gz
7.50 MB
demux_NNNNATCTGTGCNNNNN_stats.txt
1.80 kB
demux_NNNNATCTGTGCNNNNN.bam
146.98 MB
demux_NNNNATCTGTGCNNNNN_SJ.out.tab
58.98 kB
iCount summary
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_gene.tsv
367.06 kB
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_subtype.tsv
631 B
demux_NNNNATCTGTGCNNNNN_unique_summary.tsv_summary_type.tsv
260 B

Input_Control 24hrs_20180223_JU

iCount summary
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_subtype.tsv
638 B
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAAGTNNN_unique_summary.tsv_summary_gene.tsv
616.69 kB
STAR
demux_NNNNCAAGTNNN_unmapped.out.mate1.fastq.gz
16.75 MB
demux_NNNNCAAGTNNN.bam
287.17 MB
demux_NNNNCAAGTNNN_SJ.out.tab
136.92 kB
demux_NNNNCAAGTNNN.bam.bai
3.41 MB
demux_NNNNCAAGTNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAAGTNNN.fastq.gz
43.43 MB
stderr.txt
975 B
demux_NNNNCAAGTNNN_fastqc.zip
473.05 kB
iCount xlsites
demux_NNNNCAAGTNNN_unique.bedgraph
1.36 MB
demux_NNNNCAAGTNNN_skipped.bam
730.92 kB
demux_NNNNCAAGTNNN_unique.bed.gz
358.57 kB
demux_NNNNCAAGTNNN_multi.bed.gz
2.00 MB

IgG_786O__20180420_JU

Reads (single-end)
fastqc
Directory
demux_NNNNCTGTANNN.fastq.gz
40.23 MB
demux_NNNNCTGTANNN_fastqc.zip
483.69 kB
stderr.txt
975 B
STAR
demux_NNNNCTGTANNN_unmapped.out.mate1.fastq.gz
12.61 MB
demux_NNNNCTGTANNN.bam
223.52 MB
demux_NNNNCTGTANNN.bam.bai
2.21 MB
demux_NNNNCTGTANNN_stats.txt
1.80 kB
demux_NNNNCTGTANNN_SJ.out.tab
48.57 kB
iCount xlsites
demux_NNNNCTGTANNN_unique.bed.gz
117.57 kB
demux_NNNNCTGTANNN_skipped.bam
689.92 kB
demux_NNNNCTGTANNN_multi.bed.gz
826.47 kB
demux_NNNNCTGTANNN_unique.bedgraph
429.35 kB
iCount summary
demux_NNNNCTGTANNN_unique_summary.tsv_summary_type.tsv
263 B
demux_NNNNCTGTANNN_unique_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNCTGTANNN_unique_summary.tsv_summary_gene.tsv
329.05 kB

IgG_786O__20180420_JU

Reads (single-end)
fastqc
Directory
demux_NNNNTCACANNN.fastq.gz
41.02 MB
demux_NNNNTCACANNN_fastqc.zip
491.08 kB
stderr.txt
975 B
iCount xlsites
demux_NNNNTCACANNN_unique.bed.gz
291.17 kB
demux_NNNNTCACANNN_skipped.bam
754.98 kB
demux_NNNNTCACANNN_unique.bedgraph
1.11 MB
demux_NNNNTCACANNN_multi.bed.gz
1.33 MB
STAR
demux_NNNNTCACANNN_unmapped.out.mate1.fastq.gz
13.01 MB
demux_NNNNTCACANNN.bam
265.26 MB
demux_NNNNTCACANNN.bam.bai
2.69 MB
demux_NNNNTCACANNN_SJ.out.tab
143.39 kB
demux_NNNNTCACANNN_stats.txt
1.80 kB
iCount summary
demux_NNNNTCACANNN_unique_summary.tsv_summary_type.tsv
265 B
demux_NNNNTCACANNN_unique_summary.tsv_summary_subtype.tsv
636 B
demux_NNNNTCACANNN_unique_summary.tsv_summary_gene.tsv
579.22 kB

Input_Control 4hrs_20180223_JU

iCount xlsites
demux_NNNNACCTTNNN_unique.bed.gz
270.61 kB
demux_NNNNACCTTNNN_multi.bed.gz
1.79 MB
demux_NNNNACCTTNNN_unique.bedgraph
1.00 MB
demux_NNNNACCTTNNN_skipped.bam
640.71 kB
iCount summary
demux_NNNNACCTTNNN_unique_summary.tsv_summary_subtype.tsv
634 B
demux_NNNNACCTTNNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNACCTTNNN_unique_summary.tsv_summary_gene.tsv
542.88 kB
STAR
demux_NNNNACCTTNNN_unmapped.out.mate1.fastq.gz
25.90 MB
demux_NNNNACCTTNNN.bam.bai
3.33 MB
demux_NNNNACCTTNNN.bam
213.08 MB
demux_NNNNACCTTNNN_SJ.out.tab
100.41 kB
demux_NNNNACCTTNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.00 kB
demux_NNNNACCTTNNN.fastq.gz
44.22 MB
demux_NNNNACCTTNNN_fastqc.zip
528.52 kB

Input_NoQ 3min_20180223_JU

iCount xlsites
demux_NNNNCCGGANNN_multi.bed.gz
1.45 MB
demux_NNNNCCGGANNN_skipped.bam
1.38 MB
demux_NNNNCCGGANNN_unique.bed.gz
226.33 kB
demux_NNNNCCGGANNN_unique.bedgraph
844.75 kB
STAR
demux_NNNNCCGGANNN.bam.bai
3.04 MB
demux_NNNNCCGGANNN_stats.txt
1.81 kB
demux_NNNNCCGGANNN.bam
662.73 MB
demux_NNNNCCGGANNN_SJ.out.tab
81.53 kB
demux_NNNNCCGGANNN_unmapped.out.mate1.fastq.gz
42.49 MB
iCount summary
demux_NNNNCCGGANNN_unique_summary.tsv_summary_type.tsv
264 B
demux_NNNNCCGGANNN_unique_summary.tsv_summary_gene.tsv
485.57 kB
demux_NNNNCCGGANNN_unique_summary.tsv_summary_subtype.tsv
633 B
Reads (single-end)
fastqc
Directory
demux_NNNNCCGGANNN.fastq.gz
113.02 MB
stderr.txt
1.00 kB
demux_NNNNCCGGANNN_fastqc.zip
452.96 kB

m1A_786O_wt_VHL__20180420_JU

iCount summary
demux_NNNNATCCANNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_subtype.tsv
647 B
demux_NNNNATCCANNN_unique_summary.tsv_summary_gene.tsv
694.54 kB
iCount xlsites
demux_NNNNATCCANNN_skipped.bam
5.70 MB
demux_NNNNATCCANNN_unique.bed.gz
488.92 kB
demux_NNNNATCCANNN_unique.bedgraph
1.89 MB
demux_NNNNATCCANNN_multi.bed.gz
2.19 MB
STAR
demux_NNNNATCCANNN_unmapped.out.mate1.fastq.gz
110.28 MB
demux_NNNNATCCANNN.bam.bai
3.29 MB
demux_NNNNATCCANNN.bam
1.21 GB
demux_NNNNATCCANNN_stats.txt
1.81 kB
demux_NNNNATCCANNN_SJ.out.tab
254.52 kB
Reads (single-end)
fastqc
Directory
demux_NNNNATCCANNN.fastq.gz
267.82 MB
stderr.txt
975 B
demux_NNNNATCCANNN_fastqc.zip
454.39 kB

m6A_786O__20180420_JU

Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGTAACNNN_fastqc.zip
469.47 kB
demux_NNNNGTAACNNN.fastq.gz
415.44 MB
iCount xlsites
demux_NNNNGTAACNNN_skipped.bam
8.33 MB
demux_NNNNGTAACNNN_unique.bed.gz
2.53 MB
demux_NNNNGTAACNNN_unique.bedgraph
11.53 MB
demux_NNNNGTAACNNN_multi.bed.gz
7.03 MB
iCount summary
demux_NNNNGTAACNNN_unique_summary.tsv_summary_type.tsv
272 B
demux_NNNNGTAACNNN_unique_summary.tsv_summary_subtype.tsv
656 B
demux_NNNNGTAACNNN_unique_summary.tsv_summary_gene.tsv
1.11 MB
STAR
demux_NNNNGTAACNNN_unmapped.out.mate1.fastq.gz
108.60 MB
demux_NNNNGTAACNNN.bam.bai
5.15 MB
demux_NNNNGTAACNNN_stats.txt
1.82 kB
demux_NNNNGTAACNNN.bam
3.02 GB
demux_NNNNGTAACNNN_SJ.out.tab
939.07 kB

Input_NoQ plus DM-Akg 15min_20180223_JU

iCount xlsites
demux_NNNNCATTTNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCATTTNNN_trimmed_single.bed.gz
209.77 kB
demux_NNNNCATTTNNN_trimmed_single.bedgraph
788.49 kB
demux_NNNNCATTTNNN_trimmed_singleAndMulti.bed.gz
1.45 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNCATTTNNN_trimmed.fastq.gz
23.93 MB
demux_NNNNCATTTNNN_trimmed_fastqc.zip
448.78 kB
Reads (single-end)
demux_NNNNCATTTNNN.fastq.gz
27.63 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNCATTTNNN_fastqc.zip
475.82 kB
iCount summary
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_gene.tsv
465.32 kB
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
634 B
STAR
demux_NNNNCATTTNNN_trimmed_unmapped.out.mate1.fastq.gz
9.27 MB
demux_NNNNCATTTNNN_trimmed.bam.bai
2.97 MB
demux_NNNNCATTTNNN_trimmed.bam
147.28 MB
demux_NNNNCATTTNNN_trimmed_SJ.out.tab
72.59 kB
demux_NNNNCATTTNNN_trimmed_stats.txt
1.80 kB

Input_Control 15min_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNGAATANNN.fastq.gz
62.54 MB
stderr.txt
975 B
demux_NNNNGAATANNN_fastqc.zip
516.08 kB
STAR
demux_NNNNGAATANNN_trimmed_unmapped.out.mate1.fastq.gz
20.78 MB
demux_NNNNGAATANNN_trimmed.bam.bai
3.76 MB
demux_NNNNGAATANNN_trimmed.bam
345.75 MB
demux_NNNNGAATANNN_trimmed_stats.txt
1.80 kB
demux_NNNNGAATANNN_trimmed_SJ.out.tab
150.41 kB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
demux_NNNNGAATANNN_trimmed.fastq.gz
54.19 MB
demux_NNNNGAATANNN_trimmed_fastqc.zip
435.10 kB
iCount xlsites
demux_NNNNGAATANNN_trimmed_skipped.bam
3.22 kB
demux_NNNNGAATANNN_trimmed_single.bed.gz
424.24 kB
demux_NNNNGAATANNN_trimmed_singleAndMulti.bed.gz
2.47 MB
demux_NNNNGAATANNN_trimmed_single.bedgraph
1.62 MB
iCount summary
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_type.tsv
264 B
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_subtype.tsv
641 B
demux_NNNNGAATANNN_trimmed_single_summary.tsv_summary_gene.tsv
675.05 kB

Input_NoQ 3min_20180223_JU

Reads (single-end)
fastqc
Directory
stderr.txt
1.00 kB
demux_NNNNCCGGANNN_fastqc.zip
452.96 kB
demux_NNNNCCGGANNN.fastq.gz
113.02 MB

Input_NoQ plus DM-Akg 3min_20180223_JU

iCount summary
demux_NNNNAGGCANNN_trimmed_single_summary.tsv_summary_gene.tsv
469.97 kB
demux_NNNNAGGCANNN_trimmed_single_summary.tsv_summary_type.tsv
263 B
demux_NNNNAGGCANNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
STAR
demux_NNNNAGGCANNN_trimmed_unmapped.out.mate1.fastq.gz
31.08 MB
demux_NNNNAGGCANNN_trimmed_stats.txt
1.81 kB
demux_NNNNAGGCANNN_trimmed.bam.bai
3.06 MB
demux_NNNNAGGCANNN_trimmed.bam
590.29 MB
demux_NNNNAGGCANNN_trimmed_SJ.out.tab
81.58 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAGGCANNN.fastq.gz
106.17 MB
demux_NNNNAGGCANNN_fastqc.zip
473.10 kB
stderr.txt
975 B
iCount xlsites
demux_NNNNAGGCANNN_trimmed_skipped.bam
3.08 kB
demux_NNNNAGGCANNN_trimmed_single.bed.gz
220.59 kB
demux_NNNNAGGCANNN_trimmed_singleAndMulti.bed.gz
1.51 MB
demux_NNNNAGGCANNN_trimmed_single.bedgraph
822.31 kB
Cutadapt (single-end)
fastqc
Directory
demux_NNNNAGGCANNN_trimmed_fastqc.zip
436.44 kB
demux_NNNNAGGCANNN_trimmed.fastq.gz
98.93 MB
report.txt
670 B

Input_NoQ_2_plus DM-Akg 15min_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGTTANNNNN.fastq.gz
34.11 MB
demux_NNNNGCTTGTTANNNNN_fastqc.zip
390.26 kB
stderr.txt
1.05 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
674 B
demux_NNNNGCTTGTTANNNNN_trimmed_fastqc.zip
421.21 kB
demux_NNNNGCTTGTTANNNNN_trimmed.fastq.gz
24.69 MB

Input_NoQ plus DM-Akg 24hrs_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNAGACTNNN.fastq.gz
23.94 MB
stderr.txt
975 B
demux_NNNNAGACTNNN_fastqc.zip
444.68 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNAGACTNNN_trimmed.fastq.gz
21.84 MB
demux_NNNNAGACTNNN_trimmed_fastqc.zip
436.68 kB
STAR
demux_NNNNAGACTNNN_trimmed.bam.bai
2.61 MB
demux_NNNNAGACTNNN_trimmed.bam
146.79 MB
demux_NNNNAGACTNNN_trimmed_unmapped.out.mate1.fastq.gz
6.94 MB
demux_NNNNAGACTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNAGACTNNN_trimmed_SJ.out.tab
72.10 kB

Input_NoQ_2_4hrs_20180223_JU

iCount summary
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
321.30 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
Cutadapt (single-end)
report.txt
672 B
fastqc
Directory
demux_NNNNGCTTGCTGNNNNN_trimmed_fastqc.zip
416.34 kB
demux_NNNNGCTTGCTGNNNNN_trimmed.fastq.gz
18.15 MB
STAR
demux_NNNNGCTTGCTGNNNNN_trimmed.bam
106.81 MB
demux_NNNNGCTTGCTGNNNNN_trimmed.bam.bai
2.63 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
5.61 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_SJ.out.tab
48.60 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNGCTTGCTGNNNNN_fastqc.zip
400.86 kB
demux_NNNNGCTTGCTGNNNNN.fastq.gz
17.81 MB
iCount xlsites
demux_NNNNGCTTGCTGNNNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_single.bed.gz
132.11 kB
demux_NNNNGCTTGCTGNNNNN_trimmed_singleAndMulti.bed.gz
1.11 MB
demux_NNNNGCTTGCTGNNNNN_trimmed_single.bedgraph
474.67 kB

Input_NoMet 15min_20180223_JU

Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATCTGAGGNNNNN_fastqc.zip
428.29 kB
demux_NNNNATCTGAGGNNNNN.fastq.gz
29.09 MB
STAR
demux_NNNNATCTGAGGNNNNN_trimmed_unmapped.out.mate1.fastq.gz
8.86 MB
demux_NNNNATCTGAGGNNNNN_trimmed.bam
179.77 MB
demux_NNNNATCTGAGGNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNATCTGAGGNNNNN_trimmed_SJ.out.tab
72.47 kB
demux_NNNNATCTGAGGNNNNN_trimmed.bam.bai
3.04 MB
Cutadapt (single-end)
demux_NNNNATCTGAGGNNNNN_trimmed.fastq.gz
29.81 MB
report.txt
673 B
fastqc
Directory
demux_NNNNATCTGAGGNNNNN_trimmed_fastqc.zip
416.99 kB
iCount xlsites
demux_NNNNATCTGAGGNNNNN_trimmed_single.bed.gz
206.28 kB
demux_NNNNATCTGAGGNNNNN_trimmed_singleAndMulti.bed.gz
1.53 MB
demux_NNNNATCTGAGGNNNNN_trimmed_skipped.bam
3.15 kB
demux_NNNNATCTGAGGNNNNN_trimmed_single.bedgraph
757.03 kB
iCount summary
demux_NNNNATCTGAGGNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
629 B
demux_NNNNATCTGAGGNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
442.30 kB
demux_NNNNATCTGAGGNNNNN_trimmed_single_summary.tsv_summary_type.tsv
260 B

Input_NoQ 4hrs_20180223_JU

Reads (single-end)
fastqc
Directory
demux_NNNNGTATTNNN.fastq.gz
73.14 MB
stderr.txt
975 B
demux_NNNNGTATTNNN_fastqc.zip
502.88 kB
iCount summary
demux_NNNNGTATTNNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNGTATTNNN_trimmed_single_summary.tsv_summary_gene.tsv
684.42 kB
demux_NNNNGTATTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
636 B
iCount xlsites
demux_NNNNGTATTNNN_trimmed_singleAndMulti.bed.gz
2.56 MB
demux_NNNNGTATTNNN_trimmed_skipped.bam
3.45 kB
demux_NNNNGTATTNNN_trimmed_single.bedgraph
1.61 MB
demux_NNNNGTATTNNN_trimmed_single.bed.gz
424.51 kB
STAR
demux_NNNNGTATTNNN_trimmed_unmapped.out.mate1.fastq.gz
29.65 MB
demux_NNNNGTATTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGTATTNNN_trimmed.bam.bai
3.85 MB
demux_NNNNGTATTNNN_trimmed.bam
294.74 MB
demux_NNNNGTATTNNN_trimmed_SJ.out.tab
150.25 kB
Cutadapt (single-end)
report.txt
670 B
fastqc
Directory
demux_NNNNGTATTNNN_trimmed.fastq.gz
57.63 MB
demux_NNNNGTATTNNN_trimmed_fastqc.zip
505.25 kB

Input_Control 3min_20180223_JU

Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCCACNNN.fastq.gz
71.14 MB
demux_NNNNTCCACNNN_fastqc.zip
473.89 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNTCCACNNN_trimmed.fastq.gz
63.40 MB
demux_NNNNTCCACNNN_trimmed_fastqc.zip
442.90 kB

Input_NoMet 4hrs_20180223_JU

Reads (single-end)
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNATCTGTGCNNNNN.fastq.gz
24.17 MB
demux_NNNNATCTGTGCNNNNN_fastqc.zip
404.48 kB
Cutadapt (single-end)
demux_NNNNATCTGTGCNNNNN_trimmed_fastqc.zip
400.48 kB
demux_NNNNATCTGTGCNNNNN_trimmed.fastq.gz
24.69 MB
fastqc
Directory
report.txt
673 B

Input_Control_2_4hrs_20180223_JU

STAR
demux_NNNNGCTTGTGCNNNNN_trimmed_unmapped.out.mate1.fastq.gz
6.68 MB
demux_NNNNGCTTGTGCNNNNN_trimmed.bam
126.45 MB
demux_NNNNGCTTGTGCNNNNN_trimmed_stats.txt
1.80 kB
demux_NNNNGCTTGTGCNNNNN_trimmed_SJ.out.tab
46.46 kB
demux_NNNNGCTTGTGCNNNNN_trimmed.bam.bai
2.63 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGCTTGTGCNNNNN.fastq.gz
21.13 MB
stderr.txt
1.05 kB
demux_NNNNGCTTGTGCNNNNN_fastqc.zip
415.04 kB
iCount summary
demux_NNNNGCTTGTGCNNNNN_trimmed_single_summary.tsv_summary_type.tsv
259 B
demux_NNNNGCTTGTGCNNNNN_trimmed_single_summary.tsv_summary_subtype.tsv
630 B
demux_NNNNGCTTGTGCNNNNN_trimmed_single_summary.tsv_summary_gene.tsv
333.18 kB
iCount xlsites
demux_NNNNGCTTGTGCNNNNN_trimmed_single.bed.gz
137.27 kB
demux_NNNNGCTTGTGCNNNNN_trimmed_singleAndMulti.bed.gz
1.12 MB
demux_NNNNGCTTGTGCNNNNN_trimmed_skipped.bam
3.20 kB
demux_NNNNGCTTGTGCNNNNN_trimmed_single.bedgraph
494.96 kB
Cutadapt (single-end)
report.txt
673 B
fastqc
Directory
demux_NNNNGCTTGTGCNNNNN_trimmed.fastq.gz
21.51 MB
demux_NNNNGCTTGTGCNNNNN_trimmed_fastqc.zip
402.95 kB

Input_NoQ plus DM-Akg 15min_20180223_JU

iCount summary
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_type.tsv
261 B
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_subtype.tsv
632 B
demux_NNNNCATTTNNN_trimmed_single_summary.tsv_summary_gene.tsv
467.85 kB
STAR
demux_NNNNCATTTNNN_trimmed_stats.txt
1.80 kB
demux_NNNNCATTTNNN_trimmed.bam
147.85 MB
demux_NNNNCATTTNNN_trimmed_unmapped.out.mate1.fastq.gz
9.32 MB
demux_NNNNCATTTNNN_trimmed.bam.bai
2.99 MB
demux_NNNNCATTTNNN_trimmed_SJ.out.tab
73.16 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCATTTNNN.fastq.gz
27.81 MB
stderr.txt
975 B
demux_NNNNCATTTNNN_fastqc.zip
470.22 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
670 B
demux_NNNNCATTTNNN_trimmed_fastqc.zip
461.72 kB
demux_NNNNCATTTNNN_trimmed.fastq.gz
24.05 MB
iCount xlsites
demux_NNNNCATTTNNN_trimmed_skipped.bam
2.91 kB
demux_NNNNCATTTNNN_trimmed_single.bedgraph
795.85 kB
demux_NNNNCATTTNNN_trimmed_singleAndMulti.bed.gz
1.46 MB
demux_NNNNCATTTNNN_trimmed_single.bed.gz
211.73 kB

IgG_786O_20180420_JU

iCount xlsites
demux_NNNNTCACANNN_trimmed_skipped.bam
3.18 kB
demux_NNNNTCACANNN_trimmed_single.bed.gz
287.25 kB
demux_NNNNTCACANNN_trimmed_singleAndMulti.bed.gz
1.33 MB
demux_NNNNTCACANNN_trimmed_single.bedgraph
1.10 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
669 B
demux_NNNNTCACANNN_trimmed_fastqc.zip
472.34 kB
demux_NNNNTCACANNN_trimmed.fastq.gz
36.64 MB
Reads (single-end)
fastqc
Directory
demux_NNNNTCACANNN.fastq.gz
37.27 MB
demux_NNNNTCACANNN_fastqc.zip
510.02 kB
stderr.txt
975 B
iCount summary
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_type.tsv
266 B
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_gene.tsv
573.98 kB
demux_NNNNTCACANNN_trimmed_single_summary.tsv_summary_subtype.tsv
633 B
STAR
demux_NNNNTCACANNN_trimmed_unmapped.out.mate1.fastq.gz
9.49 MB
demux_NNNNTCACANNN_trimmed_stats.txt
1.80 kB
demux_NNNNTCACANNN_trimmed.bam.bai
2.66 MB
demux_NNNNTCACANNN_trimmed_SJ.out.tab
139.89 kB
demux_NNNNTCACANNN_trimmed.bam
246.37 MB

m6A_Ctrl_15'_20180106_JU

iCount xlsites
demux_NNNNGTTTCNNN_skipped.bam
1.30 MB
demux_NNNNGTTTCNNN_unique.bed.gz
36.81 kB
demux_NNNNGTTTCNNN_multi.bed.gz
397.28 kB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNGTTTCNNN_fastqc.zip
442.31 kB
demux_NNNNGTTTCNNN.fastq.gz
38.61 MB
STAR
demux_NNNNGTTTCNNN_unmapped.out.mate1.fastq.gz
4.23 MB
demux_NNNNGTTTCNNN.bam.bai
1.88 MB
demux_NNNNGTTTCNNN.bam
245.93 MB
demux_NNNNGTTTCNNN_SJ.out.tab
22.74 kB
demux_NNNNGTTTCNNN_stats.txt
1.80 kB

m6A_786O_NoQ + DM-Akg 3'_20180106_JU

Reads (single-end)
stderr.txt
1.25 kB
fastqc
Directory
m6a-786o-noq-dm-akg-3-20180106-ju.fastq.gz
79.44 MB
m6a-786o-noq-dm-akg-3-20180106-ju_fastqc.zip
447.24 kB
STAR
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
23.06 MB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed.bam.bai
20.49 kB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed.bam
125.90 MB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed.bw
106.51 kB
iCount reads proxy
fastqc
Directory
m6A_786O_NoQ+DM-Akg3'_20180106_JU_unmapped.fastq.gz
23.06 MB
stderr.txt
1.48 kB
m6A_786O_NoQ+DM-Akg3'_20180106_JU_unmapped_fastqc.zip
422.66 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
702 B
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed.fastq.gz
81.48 MB
m6a-786o-noq-dm-akg-3-20180106-ju_trimmed_fastqc.zip
447.87 kB

m6A_786O_NoQ 15'_20180106_JU

Reads (single-end)
fastqc
Directory
m6a-786o-noq-15-20180106-ju_fastqc.zip
558.78 kB
m6a-786o-noq-15-20180106-ju.fastq.gz
36.23 MB
stderr.txt
1.13 kB
Cutadapt (single-end)
fastqc
Directory
report.txt
696 B
m6a-786o-noq-15-20180106-ju_trimmed_fastqc.zip
563.05 kB
m6a-786o-noq-15-20180106-ju_trimmed.fastq.gz
37.36 MB
iCount reads proxy
m6A_786O_NoQ15'_20180106_JU_unmapped.fastq.gz
6.86 MB
fastqc
Directory
stderr.txt
1.36 kB
m6A_786O_NoQ15'_20180106_JU_unmapped_fastqc.zip
524.77 kB
STAR
m6a-786o-noq-15-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
6.86 MB
m6a-786o-noq-15-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-15-20180106-ju_trimmed.bam.bai
19.51 kB
m6a-786o-noq-15-20180106-ju_trimmed.bam
47.45 MB
m6a-786o-noq-15-20180106-ju_trimmed.bw
105.94 kB
m6a-786o-noq-15-20180106-ju_trimmed_SJ.out.tab
0 B

m6A_786O_NoQ + DM-Akg 4H_20180106_JU

iCount summary
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single_summary_type.tsv
269 B
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single_summary_subtype.tsv
649 B
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single_summary_gene.tsv
970.18 kB
iCount xlsites
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_single.bed.gz
80.38 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_single.bedgraph
197 B
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_singleAndMulti.bed.gz
123.50 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.26 kB
m6a-786o-noq-dm-akg-4h-20180106-ju.fastq.gz
120.20 MB
m6a-786o-noq-dm-akg-4h-20180106-ju_fastqc.zip
444.34 kB
iCount xlsites
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single.bed.gz
2.13 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_skipped.bam
3.32 kB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_single.bedgraph
9.93 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_singleAndMulti.bed.gz
4.01 MB
STAR
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_SJ.out.tab
750.74 kB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped.bam.bai
3.40 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
10.76 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_stats.txt
1.81 kB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped.bam
81.99 MB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped.bw
35.23 kB
STAR
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed.bam
191.58 MB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed.bam.bai
20.56 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed.bw
106.63 kB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
38.18 MB
Cutadapt (single-end)
fastqc
Directory
report.txt
703 B
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed.fastq.gz
123.42 MB
m6a-786o-noq-dm-akg-4h-20180106-ju_trimmed_fastqc.zip
440.05 kB
iCount reads proxy
fastqc
Directory
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped.fastq.gz
38.18 MB
stderr.txt
1.48 kB
m6A_786O_NoQ+DM-Akg4H_20180106_JU_unmapped_fastqc.zip
422.57 kB

IgG_786O__20180420_JU

Reads (single-end)
fastqc
Directory
demux_NNNNCTGTANNN.fastq.gz
39.39 MB
stderr.txt
975 B
demux_NNNNCTGTANNN_fastqc.zip
469.56 kB
iCount xlsites
demux_NNNNCTGTANNN_trimmed_single.bed.gz
124.81 kB
demux_NNNNCTGTANNN_trimmed_singleAndMulti.bed.gz
877.95 kB
demux_NNNNCTGTANNN_trimmed_single.bedgraph
457.36 kB
demux_NNNNCTGTANNN_trimmed_skipped.bam
2.91 kB
iCount summary
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_type.tsv
262 B
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_gene.tsv
346.81 kB
demux_NNNNCTGTANNN_trimmed_single_summary.tsv_summary_subtype.tsv
631 B
STAR
demux_NNNNCTGTANNN_trimmed_unmapped.out.mate1.fastq.gz
9.74 MB
demux_NNNNCTGTANNN_trimmed_stats.txt
1.80 kB
demux_NNNNCTGTANNN_trimmed.bam.bai
2.27 MB
demux_NNNNCTGTANNN_trimmed_SJ.out.tab
50.71 kB
demux_NNNNCTGTANNN_trimmed.bam
219.44 MB
Cutadapt (single-end)
report.txt
669 B
fastqc
Directory
demux_NNNNCTGTANNN_trimmed.fastq.gz
38.37 MB
demux_NNNNCTGTANNN_trimmed_fastqc.zip
433.95 kB

m6A_786O:wtVHL__20180420_JU

Cutadapt (single-end)
fastqc
Directory
demux_NNNNAGTTANNN_trimmed.fastq.gz
294.85 MB
demux_NNNNAGTTANNN_trimmed_fastqc.zip
429.46 kB
report.txt
670 B
iCount xlsites
demux_NNNNAGTTANNN_trimmed_skipped.bam
4.71 kB
demux_NNNNAGTTANNN_trimmed_single.bed.gz
2.03 MB
demux_NNNNAGTTANNN_trimmed_singleAndMulti.bed.gz
5.95 MB
demux_NNNNAGTTANNN_trimmed_single.bedgraph
9.13 MB
Reads (single-end)
fastqc
Directory
demux_NNNNAGTTANNN_fastqc.zip
461.71 kB
stderr.txt
975 B
demux_NNNNAGTTANNN.fastq.gz
298.21 MB
STAR
demux_NNNNAGTTANNN_trimmed_unmapped.out.mate1.fastq.gz
64.06 MB
demux_NNNNAGTTANNN_trimmed.bam
2.16 GB
demux_NNNNAGTTANNN_trimmed.bam.bai
4.80 MB
demux_NNNNAGTTANNN_trimmed_SJ.out.tab
772.99 kB
demux_NNNNAGTTANNN_trimmed_stats.txt
1.81 kB
iCount summary
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_subtype.tsv
648 B
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_type.tsv
270 B
demux_NNNNAGTTANNN_trimmed_single_summary.tsv_summary_gene.tsv
1.06 MB

m6A_NoQ_15'_20180106_JU

Reads (single-end)
fastqc
Directory
demux_NNNNAACTCNNN.fastq.gz
43.13 MB
stderr.txt
975 B
demux_NNNNAACTCNNN_fastqc.zip
443.35 kB
STAR
demux_NNNNAACTCNNN_unmapped.out.mate1.fastq.gz
5.15 MB
demux_NNNNAACTCNNN_stats.txt
1.80 kB
demux_NNNNAACTCNNN.bam.bai
1.96 MB
demux_NNNNAACTCNNN_SJ.out.tab
24.46 kB
demux_NNNNAACTCNNN.bam
285.47 MB
iCount xlsites
demux_NNNNAACTCNNN_unique.bed.gz
40.67 kB
demux_NNNNAACTCNNN_skipped.bam
1.13 MB
demux_NNNNAACTCNNN_multi.bed.gz
430.80 kB

m6A_786O_Ctrl 3'_20180106_JU

iCount reads proxy
m6A_786O_Ctrl3'_20180106_JU_unmapped.fastq.gz
16.07 MB
fastqc
Directory
m6A_786O_Ctrl3'_20180106_JU_unmapped_fastqc.zip
480.65 kB
stderr.txt
1.36 kB
Reads (single-end)
m6a-786o-ctrl-3-20180106-ju.fastq.gz
57.47 MB
fastqc
Directory
stderr.txt
1.19 kB
m6a-786o-ctrl-3-20180106-ju_fastqc.zip
506.98 kB
STAR
m6a-786o-ctrl-3-20180106-ju_trimmed.bam.bai
20.42 kB
m6a-786o-ctrl-3-20180106-ju_trimmed.bam
90.97 MB
m6a-786o-ctrl-3-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-ctrl-3-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
16.07 MB
m6a-786o-ctrl-3-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-ctrl-3-20180106-ju_trimmed.bw
106.35 kB
Cutadapt (single-end)
fastqc
Directory
m6a-786o-ctrl-3-20180106-ju_trimmed.fastq.gz
58.99 MB
report.txt
696 B
m6a-786o-ctrl-3-20180106-ju_trimmed_fastqc.zip
461.45 kB

m6A_786O_NoQ + DM-Akg 24H_20180106_JU

STAR
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed.bw
106.54 kB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_stats.txt
1.78 kB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed.bam
175.77 MB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_unmapped.out.mate1.fastq.gz
32.48 MB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_SJ.out.tab
0 B
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed.bam.bai
20.56 kB
iCount summary
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single_summary_subtype.tsv
643 B
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single_summary_type.tsv
269 B
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single_summary_gene.tsv
944.59 kB
iCount xlsites
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single.bed.gz
2.22 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_singleAndMulti.bed.gz
3.91 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_skipped.bam
3.50 kB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_single.bedgraph
10.41 MB
STAR
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_unmapped.out.mate1.fastq.gz
8.51 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped.bam.bai
3.16 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped.bam
71.98 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_stats.txt
1.80 kB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped.bw
35.99 kB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_SJ.out.tab
852.87 kB
iCount reads proxy
fastqc
Directory
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped.fastq.gz
32.48 MB
m6A_786O_NoQ+DM-Akg24H_20180106_JU_unmapped_fastqc.zip
429.92 kB
stderr.txt
1.50 kB
Reads (single-end)
m6a-786o-noq-dm-akg-24h-20180106-ju.fastq.gz
110.62 MB
fastqc
Directory
m6a-786o-noq-dm-akg-24h-20180106-ju_fastqc.zip
448.04 kB
stderr.txt
1.28 kB
Cutadapt (single-end)
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_fastqc.zip
448.83 kB
fastqc
Directory
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed.fastq.gz
113.74 MB
report.txt
704 B
iCount xlsites
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_skipped.bam
3.98 kB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_single.bed.gz
81.43 kB
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_single.bedgraph
198 B
m6a-786o-noq-dm-akg-24h-20180106-ju_trimmed_singleAndMulti.bed.gz
124.69 kB