Back to Archive
3T3 miCLIP PUS1
Charlotte Capitanchik
Nov. 23, 2017
PUS1_wt_largeRNAS
STAR
demux_NNNNGTTTCNNN.bam
331.12 MB
demux_NNNNGTTTCNNN.bam.bai
2.32 MB
demux_NNNNGTTTCNNN_unmapped.out.mate1.fastq.gz
65.10 MB
demux_NNNNGTTTCNNN_stats.txt
1.81 kB
demux_NNNNGTTTCNNN_SJ.out.tab
50.07 kB
iCount xlsites
demux_NNNNGTTTCNNN_multi.bed.gz
704.31 kB
demux_NNNNGTTTCNNN_unique.bed.gz
134.14 kB
demux_NNNNGTTTCNNN_skipped.bam
3.05 MB
Reads (single-end)
demux_NNNNGTTTCNNN.fastq.gz
202.20 MB
fastqc
Directory
demux_NNNNGTTTCNNN_fastqc.zip
431.61 kB
stderr.txt
975 B
demux_nomatch.fastq.gz
Reads (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
3.12 GB
demux_nomatch_fastqc.zip
467.06 kB
stderr.txt
875 B
PUS1_wt_smallRNAS
STAR
demux_NNNNGATCGNNN.bam
1.07 GB
demux_NNNNGATCGNNN.bam.bai
2.77 MB
demux_NNNNGATCGNNN_unmapped.out.mate1.fastq.gz
73.26 MB
demux_NNNNGATCGNNN_stats.txt
1.81 kB
demux_NNNNGATCGNNN_SJ.out.tab
95.18 kB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNGATCGNNN.fastq.gz
357.21 MB
demux_NNNNGATCGNNN_fastqc.zip
463.47 kB
iCount xlsites
demux_NNNNGATCGNNN_unique.bed.gz
178.37 kB
demux_NNNNGATCGNNN_skipped.bam
7.17 MB
demux_NNNNGATCGNNN_multi.bed.gz
902.10 kB
SAD533A92-A129_S16_L004_R1_001.fastq.gz
Reads (single-end)
fastqc
Directory
stderr.txt
1.19 kB
SAD533A92-A129_S16_L004_R1_001.fastq.gz
8.33 GB
SAD533A92-A129_S16_L004_R1_001_fastqc.zip
486.49 kB
pseudoU_mouse fibroblast NIH 3T3 Pus10 KD_20180314_JU
iCount xlsites
demux_NNNNTGAAACTGNNNNN_multi.bed.gz
987.73 kB
demux_NNNNTGAAACTGNNNNN_unique.bedgraph
544.78 kB
demux_NNNNTGAAACTGNNNNN_skipped.bam
14.74 MB
demux_NNNNTGAAACTGNNNNN_unique.bed.gz
144.77 kB
Reads (single-end)
demux_NNNNTGAAACTGNNNNN_fastqc.zip
529.10 kB
fastqc
Directory
demux_NNNNTGAAACTGNNNNN.fastq.gz
191.85 MB
stderr.txt
1.05 kB
iCount summary
demux_NNNNTGAAACTGNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTGAAACTGNNNNN_unique_summary.tsv_summary_subtype.tsv
651 B
demux_NNNNTGAAACTGNNNNN_unique_summary.tsv_summary_gene.tsv
229.63 kB
STAR
demux_NNNNTGAAACTGNNNNN_unmapped.out.mate1.fastq.gz
49.22 MB
demux_NNNNTGAAACTGNNNNN.bam.bai
2.63 MB
demux_NNNNTGAAACTGNNNNN.bam
484.00 MB
demux_NNNNTGAAACTGNNNNN_SJ.out.tab
80.28 kB
demux_NNNNTGAAACTGNNNNN_stats.txt
1.81 kB
pseudoU_mouse fibroblast NIH 3T3 Pus1 KD_20180314_JU_2
iCount summary
demux_NNNNCAGAAAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAAAGGNNNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAGAAAGGNNNNN_unique_summary.tsv_summary_gene.tsv
117.76 kB
iCount xlsites
demux_NNNNCAGAAAGGNNNNN_unique.bed.gz
77.29 kB
demux_NNNNCAGAAAGGNNNNN_skipped.bam
10.83 MB
demux_NNNNCAGAAAGGNNNNN_unique.bedgraph
283.92 kB
demux_NNNNCAGAAAGGNNNNN_multi.bed.gz
547.13 kB
STAR
demux_NNNNCAGAAAGGNNNNN_unmapped.out.mate1.fastq.gz
36.53 MB
demux_NNNNCAGAAAGGNNNNN.bam.bai
2.16 MB
demux_NNNNCAGAAAGGNNNNN_SJ.out.tab
40.89 kB
demux_NNNNCAGAAAGGNNNNN.bam
356.90 MB
demux_NNNNCAGAAAGGNNNNN_stats.txt
1.81 kB
Reads (single-end)
demux_NNNNCAGAAAGGNNNNN.fastq.gz
143.45 MB
fastqc
Directory
demux_NNNNCAGAAAGGNNNNN_fastqc.zip
508.63 kB
stderr.txt
1.05 kB
PUS1_kd_8days_smallRNAS
iCount xlsites
demux_NNNNTCGAGNNN_unique.bed.gz
227.07 kB
demux_NNNNTCGAGNNN_skipped.bam
79.23 MB
demux_NNNNTCGAGNNN_multi.bed.gz
1.14 MB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCGAGNNN_fastqc.zip
482.28 kB
demux_NNNNTCGAGNNN.fastq.gz
318.65 MB
STAR
demux_NNNNTCGAGNNN_unmapped.out.mate1.fastq.gz
78.23 MB
demux_NNNNTCGAGNNN.bam.bai
3.05 MB
demux_NNNNTCGAGNNN_stats.txt
1.81 kB
demux_NNNNTCGAGNNN_SJ.out.tab
134.49 kB
demux_NNNNTCGAGNNN.bam
1.03 GB
merged_justvalentina_miclip.fq.gz
Reads (single-end)
fastqc
Directory
merged_justvalentina_miclip.fastq.gz
2.59 GB
merged_justvalentina_miclip_fastqc.zip
558.35 kB
stderr.txt
1.13 kB
PUS1_kd_4days_smallRNAS
STAR
demux_NNNNATACGNNN.bam.bai
3.21 MB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
88.42 MB
demux_NNNNATACGNNN.bam
1.16 GB
demux_NNNNATACGNNN_SJ.out.tab
136.11 kB
demux_NNNNATACGNNN_stats.txt
1.81 kB
Reads (single-end)
demux_NNNNATACGNNN.fastq.gz
396.27 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNATACGNNN_fastqc.zip
464.92 kB
iCount xlsites
demux_NNNNATACGNNN_skipped.bam
9.83 MB
demux_NNNNATACGNNN_unique.bed.gz
233.22 kB
demux_NNNNATACGNNN_multi.bed.gz
1.33 MB
MouseIgG_smallRNAS
Reads (single-end)
demux_NNNNCACAGNNN.fastq.gz
16.90 MB
stderr.txt
975 B
fastqc
Directory
demux_NNNNCACAGNNN_fastqc.zip
461.20 kB
iCount xlsites
demux_NNNNCACAGNNN_skipped.bam
587.30 kB
demux_NNNNCACAGNNN_unique.bed.gz
53.05 kB
demux_NNNNCACAGNNN_multi.bed.gz
293.80 kB
STAR
demux_NNNNCACAGNNN_unmapped.out.mate1.fastq.gz
8.53 MB
demux_NNNNCACAGNNN.bam
31.20 MB
demux_NNNNCACAGNNN_stats.txt
1.80 kB
demux_NNNNCACAGNNN_SJ.out.tab
24.19 kB
demux_NNNNCACAGNNN.bam.bai
1.76 MB
MouseIgG_largeRNAs_1
STAR
demux_NNNNGGAGCNNN_stats.txt
1.79 kB
demux_NNNNGGAGCNNN_unmapped.out.mate1.fastq.gz
2.54 MB
demux_NNNNGGAGCNNN.bam.bai
1.48 MB
demux_NNNNGGAGCNNN_SJ.out.tab
6.37 kB
demux_NNNNGGAGCNNN.bam
8.71 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGGAGCNNN.fastq.gz
6.45 MB
demux_NNNNGGAGCNNN_fastqc.zip
424.87 kB
stderr.txt
975 B
iCount xlsites
demux_NNNNGGAGCNNN_multi.bed.gz
116.35 kB
demux_NNNNGGAGCNNN_unique.bed.gz
21.12 kB
demux_NNNNGGAGCNNN_skipped.bam
190.30 kB
PUS1_kd_4days_largeRNAs
STAR
demux_NNNNAACTCNNN_unmapped.out.mate1.fastq.gz
104.61 MB
demux_NNNNAACTCNNN.bam.bai
3.60 MB
demux_NNNNAACTCNNN.bam
1.02 GB
demux_NNNNAACTCNNN_stats.txt
1.81 kB
demux_NNNNAACTCNNN_SJ.out.tab
609.79 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAACTCNNN_fastqc.zip
405.02 kB
stderr.txt
975 B
demux_NNNNAACTCNNN.fastq.gz
456.97 MB
iCount xlsites
demux_NNNNAACTCNNN_skipped.bam
12.11 MB
demux_NNNNAACTCNNN_unique.bed.gz
1.14 MB
demux_NNNNAACTCNNN_multi.bed.gz
4.09 MB
MouseIgG_largeRNAs
STAR
demux_NNNNCCTGCNNN_stats.txt
1.80 kB
demux_NNNNCCTGCNNN.bam.bai
1.62 MB
demux_NNNNCCTGCNNN_unmapped.out.mate1.fastq.gz
3.51 MB
demux_NNNNCCTGCNNN.bam
19.60 MB
demux_NNNNCCTGCNNN_SJ.out.tab
20.93 kB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNCCTGCNNN.fastq.gz
11.70 MB
demux_NNNNCCTGCNNN_fastqc.zip
416.00 kB
iCount xlsites
demux_NNNNCCTGCNNN_skipped.bam
312.57 kB
demux_NNNNCCTGCNNN_multi.bed.gz
259.17 kB
demux_NNNNCCTGCNNN_unique.bed.gz
59.56 kB
PUS1_kd_8days_largeRNAs
iCount xlsites
demux_NNNNTCATCNNN_skipped.bam
8.68 MB
demux_NNNNTCATCNNN_unique.bed.gz
643.16 kB
demux_NNNNTCATCNNN_multi.bed.gz
2.27 MB
STAR
demux_NNNNTCATCNNN_unmapped.out.mate1.fastq.gz
77.29 MB
demux_NNNNTCATCNNN.bam.bai
3.22 MB
demux_NNNNTCATCNNN.bam
716.49 MB
demux_NNNNTCATCNNN_SJ.out.tab
404.34 kB
demux_NNNNTCATCNNN_stats.txt
1.81 kB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNTCATCNNN.fastq.gz
340.24 MB
demux_NNNNTCATCNNN_fastqc.zip
393.37 kB
pseudoU_mouse fibroblast NIH 3T3 Pus7 KD_20180314_JU
iCount summary
demux_NNNNTGAAATTANNNNN_unique_summary.tsv_summary_subtype.tsv
650 B
demux_NNNNTGAAATTANNNNN_unique_summary.tsv_summary_type.tsv
270 B
demux_NNNNTGAAATTANNNNN_unique_summary.tsv_summary_gene.tsv
224.01 kB
iCount xlsites
demux_NNNNTGAAATTANNNNN_unique.bed.gz
143.27 kB
demux_NNNNTGAAATTANNNNN_skipped.bam
17.31 MB
demux_NNNNTGAAATTANNNNN_multi.bed.gz
975.98 kB
demux_NNNNTGAAATTANNNNN_unique.bedgraph
541.68 kB
STAR
demux_NNNNTGAAATTANNNNN_unmapped.out.mate1.fastq.gz
37.28 MB
demux_NNNNTGAAATTANNNNN.bam.bai
2.64 MB
demux_NNNNTGAAATTANNNNN.bam
388.89 MB
demux_NNNNTGAAATTANNNNN_SJ.out.tab
77.52 kB
demux_NNNNTGAAATTANNNNN_stats.txt
1.80 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGAAATTANNNNN_fastqc.zip
474.13 kB
stderr.txt
1.05 kB
demux_NNNNTGAAATTANNNNN.fastq.gz
155.61 MB
pseudoU_mouse fibroblast NIH 3T3 Pus4 KD_20180314_JU
iCount summary
demux_NNNNTGAAAATTNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTGAAAATTNNNNN_unique_summary.tsv_summary_gene.tsv
281.68 kB
demux_NNNNTGAAAATTNNNNN_unique_summary.tsv_summary_subtype.tsv
648 B
STAR
demux_NNNNTGAAAATTNNNNN.bam.bai
2.90 MB
demux_NNNNTGAAAATTNNNNN_unmapped.out.mate1.fastq.gz
49.24 MB
demux_NNNNTGAAAATTNNNNN.bam
523.03 MB
demux_NNNNTGAAAATTNNNNN_stats.txt
1.81 kB
demux_NNNNTGAAAATTNNNNN_SJ.out.tab
108.71 kB
iCount xlsites
demux_NNNNTGAAAATTNNNNN_unique.bed.gz
180.60 kB
demux_NNNNTGAAAATTNNNNN_multi.bed.gz
1.25 MB
demux_NNNNTGAAAATTNNNNN_unique.bedgraph
680.38 kB
demux_NNNNTGAAAATTNNNNN_skipped.bam
18.98 MB
Reads (single-end)
demux_NNNNTGAAAATTNNNNN.fastq.gz
205.21 MB
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNTGAAAATTNNNNN_fastqc.zip
499.94 kB
pseudoU_mouse fibroblast NIH 3T3 Pus7 KD_20180314_JU_2
iCount summary
demux_NNNNTGAAATGCNNNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNTGAAATGCNNNNN_unique_summary.tsv_summary_subtype.tsv
650 B
demux_NNNNTGAAATGCNNNNN_unique_summary.tsv_summary_gene.tsv
221.14 kB
iCount xlsites
demux_NNNNTGAAATGCNNNNN_skipped.bam
14.68 MB
demux_NNNNTGAAATGCNNNNN_multi.bed.gz
931.40 kB
demux_NNNNTGAAATGCNNNNN_unique.bedgraph
523.58 kB
demux_NNNNTGAAATGCNNNNN_unique.bed.gz
139.24 kB
STAR
demux_NNNNTGAAATGCNNNNN.bam
454.12 MB
demux_NNNNTGAAATGCNNNNN.bam.bai
2.59 MB
demux_NNNNTGAAATGCNNNNN_unmapped.out.mate1.fastq.gz
48.43 MB
demux_NNNNTGAAATGCNNNNN_stats.txt
1.81 kB
demux_NNNNTGAAATGCNNNNN_SJ.out.tab
73.78 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGAAATGCNNNNN.fastq.gz
183.73 MB
demux_NNNNTGAAATGCNNNNN_fastqc.zip
520.83 kB
stderr.txt
1.05 kB
pseudoU_mouse fibroblast NIH 3T3 Pus1 KD_20180314_JU
iCount summary
demux_NNNNCAGAAATTNNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNCAGAAATTNNNNN_unique_summary.tsv_summary_gene.tsv
166.47 kB
demux_NNNNCAGAAATTNNNNN_unique_summary.tsv_summary_subtype.tsv
644 B
iCount xlsites
demux_NNNNCAGAAATTNNNNN_unique.bedgraph
400.13 kB
demux_NNNNCAGAAATTNNNNN_skipped.bam
19.99 MB
demux_NNNNCAGAAATTNNNNN_multi.bed.gz
774.86 kB
demux_NNNNCAGAAATTNNNNN_unique.bed.gz
107.98 kB
STAR
demux_NNNNCAGAAATTNNNNN_unmapped.out.mate1.fastq.gz
56.38 MB
demux_NNNNCAGAAATTNNNNN.bam.bai
2.46 MB
demux_NNNNCAGAAATTNNNNN_stats.txt
1.81 kB
demux_NNNNCAGAAATTNNNNN.bam
571.61 MB
demux_NNNNCAGAAATTNNNNN_SJ.out.tab
62.25 kB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAAATTNNNNN.fastq.gz
227.61 MB
stderr.txt
1.05 kB
demux_NNNNCAGAAATTNNNNN_fastqc.zip
463.33 kB
pseudoU_mouse fibroblast NIH 3T3 SCRAMBLE_20180314_JU_2
iCount summary
demux_NNNNCAGAATGCNNNNN_unique_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAATGCNNNNN_unique_summary.tsv_summary_gene.tsv
117.53 kB
demux_NNNNCAGAATGCNNNNN_unique_summary.tsv_summary_type.tsv
265 B
Reads (single-end)
demux_NNNNCAGAATGCNNNNN.fastq.gz
142.91 MB
fastqc
Directory
demux_NNNNCAGAATGCNNNNN_fastqc.zip
531.40 kB
stderr.txt
1.05 kB
iCount xlsites
demux_NNNNCAGAATGCNNNNN_skipped.bam
11.26 MB
demux_NNNNCAGAATGCNNNNN_unique.bed.gz
74.84 kB
demux_NNNNCAGAATGCNNNNN_multi.bed.gz
513.33 kB
demux_NNNNCAGAATGCNNNNN_unique.bedgraph
275.82 kB
STAR
demux_NNNNCAGAATGCNNNNN_unmapped.out.mate1.fastq.gz
37.46 MB
demux_NNNNCAGAATGCNNNNN.bam
343.54 MB
demux_NNNNCAGAATGCNNNNN_SJ.out.tab
37.81 kB
demux_NNNNCAGAATGCNNNNN.bam.bai
2.10 MB
demux_NNNNCAGAATGCNNNNN_stats.txt
1.81 kB
pseudoU_mouse fibroblast NIH 3T3 Pus4 KD_20180314_JU_2
iCount summary
demux_NNNNTGAAAAGGNNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNTGAAAAGGNNNNN_unique_summary.tsv_summary_gene.tsv
200.32 kB
demux_NNNNTGAAAAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
651 B
iCount xlsites
demux_NNNNTGAAAAGGNNNNN_unique.bedgraph
460.41 kB
demux_NNNNTGAAAAGGNNNNN_multi.bed.gz
841.57 kB
demux_NNNNTGAAAAGGNNNNN_unique.bed.gz
123.03 kB
demux_NNNNTGAAAAGGNNNNN_skipped.bam
10.52 MB
STAR
demux_NNNNTGAAAAGGNNNNN_unmapped.out.mate1.fastq.gz
33.14 MB
demux_NNNNTGAAAAGGNNNNN.bam
330.18 MB
demux_NNNNTGAAAAGGNNNNN.bam.bai
2.49 MB
demux_NNNNTGAAAAGGNNNNN_stats.txt
1.80 kB
demux_NNNNTGAAAAGGNNNNN_SJ.out.tab
68.86 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGAAAAGGNNNNN_fastqc.zip
491.42 kB
stderr.txt
1.05 kB
demux_NNNNTGAAAAGGNNNNN.fastq.gz
130.65 MB
pseudoU_mouse fibroblast NIH 3T3 Pus10 KD_20180314_JU_2
iCount xlsites
demux_NNNNTGAAACGTNNNNN_skipped.bam
18.29 MB
demux_NNNNTGAAACGTNNNNN_unique.bed.gz
164.87 kB
demux_NNNNTGAAACGTNNNNN_unique.bedgraph
619.79 kB
demux_NNNNTGAAACGTNNNNN_multi.bed.gz
1.09 MB
iCount summary
demux_NNNNTGAAACGTNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTGAAACGTNNNNN_unique_summary.tsv_summary_subtype.tsv
648 B
demux_NNNNTGAAACGTNNNNN_unique_summary.tsv_summary_gene.tsv
264.37 kB
STAR
demux_NNNNTGAAACGTNNNNN.bam.bai
2.75 MB
demux_NNNNTGAAACGTNNNNN_unmapped.out.mate1.fastq.gz
57.25 MB
demux_NNNNTGAAACGTNNNNN.bam
603.33 MB
demux_NNNNTGAAACGTNNNNN_SJ.out.tab
90.94 kB
demux_NNNNTGAAACGTNNNNN_stats.txt
1.81 kB
Reads (single-end)
demux_NNNNTGAAACGTNNNNN.fastq.gz
232.87 MB
fastqc
Directory
demux_NNNNTGAAACGTNNNNN_fastqc.zip
488.41 kB
stderr.txt
1.05 kB
pseudoU_mouse fibroblast NIH 3T3 SCRAMBLE_20180314_JU
iCount xlsites
demux_NNNNCAGAATTANNNNN_multi.bed.gz
706.42 kB
demux_NNNNCAGAATTANNNNN_unique.bed.gz
100.36 kB
demux_NNNNCAGAATTANNNNN_skipped.bam
17.23 MB
demux_NNNNCAGAATTANNNNN_unique.bedgraph
372.37 kB
iCount summary
demux_NNNNCAGAATTANNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNCAGAATTANNNNN_unique_summary.tsv_summary_gene.tsv
156.11 kB
demux_NNNNCAGAATTANNNNN_unique_summary.tsv_summary_subtype.tsv
646 B
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAATTANNNNN_fastqc.zip
477.46 kB
stderr.txt
1.05 kB
demux_NNNNCAGAATTANNNNN.fastq.gz
191.39 MB
STAR
demux_NNNNCAGAATTANNNNN_unmapped.out.mate1.fastq.gz
47.90 MB
demux_NNNNCAGAATTANNNNN.bam.bai
2.36 MB
demux_NNNNCAGAATTANNNNN_stats.txt
1.81 kB
demux_NNNNCAGAATTANNNNN.bam
470.28 MB
demux_NNNNCAGAATTANNNNN_SJ.out.tab
53.56 kB
No Sample
iCount summary
demux_NNNNCAGAATGCNNNNN_unique_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAATGCNNNNN_unique_summary.tsv_summary_gene.tsv
117.53 kB
demux_NNNNCAGAATGCNNNNN_unique_summary.tsv_summary_type.tsv
265 B
Reads (single-end)
fastqc
Directory
demux_nomatch.fastq.gz
3.12 GB
demux_nomatch_fastqc.zip
467.06 kB
stderr.txt
875 B
iCount xlsites
demux_NNNNTCGAGNNN_unique.bed.gz
227.07 kB
demux_NNNNTCGAGNNN_skipped.bam
79.23 MB
demux_NNNNTCGAGNNN_multi.bed.gz
1.14 MB
Reads (single-end)
fastqc
Directory
merged_justvalentina_miclip.fastq.gz
2.59 GB
merged_justvalentina_miclip_fastqc.zip
558.35 kB
stderr.txt
1.13 kB
iCount summary
demux_NNNNTGAAATTANNNNN_unique_summary.tsv_summary_subtype.tsv
650 B
demux_NNNNTGAAATTANNNNN_unique_summary.tsv_summary_type.tsv
270 B
demux_NNNNTGAAATTANNNNN_unique_summary.tsv_summary_gene.tsv
224.01 kB
iCount summary
demux_NNNNTGAAAAGGNNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNTGAAAAGGNNNNN_unique_summary.tsv_summary_gene.tsv
200.32 kB
demux_NNNNTGAAAAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
651 B
iCount summary
demux_NNNNTGAAATGCNNNNN_unique_summary.tsv_summary_type.tsv
267 B
demux_NNNNTGAAATGCNNNNN_unique_summary.tsv_summary_subtype.tsv
650 B
demux_NNNNTGAAATGCNNNNN_unique_summary.tsv_summary_gene.tsv
221.14 kB
iCount xlsites
demux_NNNNTGAAACTGNNNNN_multi.bed.gz
987.73 kB
demux_NNNNTGAAACTGNNNNN_unique.bedgraph
544.78 kB
demux_NNNNTGAAACTGNNNNN_skipped.bam
14.74 MB
demux_NNNNTGAAACTGNNNNN_unique.bed.gz
144.77 kB
iCount xlsites
demux_NNNNTGAAACGTNNNNN_skipped.bam
18.29 MB
demux_NNNNTGAAACGTNNNNN_unique.bed.gz
164.87 kB
demux_NNNNTGAAACGTNNNNN_unique.bedgraph
619.79 kB
demux_NNNNTGAAACGTNNNNN_multi.bed.gz
1.09 MB
iCount xlsites
demux_NNNNCAGAATTANNNNN_multi.bed.gz
706.42 kB
demux_NNNNCAGAATTANNNNN_unique.bed.gz
100.36 kB
demux_NNNNCAGAATTANNNNN_skipped.bam
17.23 MB
demux_NNNNCAGAATTANNNNN_unique.bedgraph
372.37 kB
Reads (single-end)
demux_NNNNCACAGNNN.fastq.gz
16.90 MB
stderr.txt
975 B
fastqc
Directory
demux_NNNNCACAGNNN_fastqc.zip
461.20 kB
Upload iCount sample annotation
Gurdon-Valentina-VM-TK-miCLIP-14.03.2018_FINALIMAPS.xlsx
49.73 kB
Gurdon-Valentina-VM-TK-miCLIP-14.03.2018_FINALIMAPS.tab.gz
948 B
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
580 B
iCount summary
demux_NNNNCAGAATTANNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNCAGAATTANNNNN_unique_summary.tsv_summary_gene.tsv
156.11 kB
demux_NNNNCAGAATTANNNNN_unique_summary.tsv_summary_subtype.tsv
646 B
Upload iCount sample annotation
iclip_annotation_templateSAD533A92-A129.tab.gz
640 B
iclip_annotation_templateSAD533A92-A129.xlsx
49.16 kB
STAR
demux_NNNNAACTCNNN_unmapped.out.mate1.fastq.gz
104.61 MB
demux_NNNNAACTCNNN.bam.bai
3.60 MB
demux_NNNNAACTCNNN.bam
1.02 GB
demux_NNNNAACTCNNN_stats.txt
1.81 kB
demux_NNNNAACTCNNN_SJ.out.tab
609.79 kB
iCount xlsites
demux_NNNNCACAGNNN_skipped.bam
587.30 kB
demux_NNNNCACAGNNN_unique.bed.gz
53.05 kB
demux_NNNNCACAGNNN_multi.bed.gz
293.80 kB
iCount xlsites
demux_NNNNTCATCNNN_skipped.bam
8.68 MB
demux_NNNNTCATCNNN_unique.bed.gz
643.16 kB
demux_NNNNTCATCNNN_multi.bed.gz
2.27 MB
iCount demultiplex (from annotation file)
demultiplexing_stats.txt
489 B
Reads (single-end)
demux_NNNNCAGAATGCNNNNN.fastq.gz
142.91 MB
fastqc
Directory
demux_NNNNCAGAATGCNNNNN_fastqc.zip
531.40 kB
stderr.txt
1.05 kB
Reads (single-end)
demux_NNNNTGAAACTGNNNNN_fastqc.zip
529.10 kB
fastqc
Directory
demux_NNNNTGAAACTGNNNNN.fastq.gz
191.85 MB
stderr.txt
1.05 kB
iCount summary
demux_NNNNTGAAAATTNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTGAAAATTNNNNN_unique_summary.tsv_summary_gene.tsv
281.68 kB
demux_NNNNTGAAAATTNNNNN_unique_summary.tsv_summary_subtype.tsv
648 B
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAATTANNNNN_fastqc.zip
477.46 kB
stderr.txt
1.05 kB
demux_NNNNCAGAATTANNNNN.fastq.gz
191.39 MB
STAR
demux_NNNNGGAGCNNN_stats.txt
1.79 kB
demux_NNNNGGAGCNNN_unmapped.out.mate1.fastq.gz
2.54 MB
demux_NNNNGGAGCNNN.bam.bai
1.48 MB
demux_NNNNGGAGCNNN_SJ.out.tab
6.37 kB
demux_NNNNGGAGCNNN.bam
8.71 MB
STAR
demux_NNNNTGAAAATTNNNNN.bam.bai
2.90 MB
demux_NNNNTGAAAATTNNNNN_unmapped.out.mate1.fastq.gz
49.24 MB
demux_NNNNTGAAAATTNNNNN.bam
523.03 MB
demux_NNNNTGAAAATTNNNNN_stats.txt
1.81 kB
demux_NNNNTGAAAATTNNNNN_SJ.out.tab
108.71 kB
iCount summary
demux_NNNNCAGAAAGGNNNNN_unique_summary.tsv_summary_subtype.tsv
643 B
demux_NNNNCAGAAAGGNNNNN_unique_summary.tsv_summary_type.tsv
266 B
demux_NNNNCAGAAAGGNNNNN_unique_summary.tsv_summary_gene.tsv
117.76 kB
iCount summary
demux_NNNNTGAAACGTNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTGAAACGTNNNNN_unique_summary.tsv_summary_subtype.tsv
648 B
demux_NNNNTGAAACGTNNNNN_unique_summary.tsv_summary_gene.tsv
264.37 kB
iCount summary
demux_NNNNTGAAACTGNNNNN_unique_summary.tsv_summary_type.tsv
268 B
demux_NNNNTGAAACTGNNNNN_unique_summary.tsv_summary_subtype.tsv
651 B
demux_NNNNTGAAACTGNNNNN_unique_summary.tsv_summary_gene.tsv
229.63 kB
iCount summary
demux_NNNNCAGAAATTNNNNN_unique_summary.tsv_summary_type.tsv
269 B
demux_NNNNCAGAAATTNNNNN_unique_summary.tsv_summary_gene.tsv
166.47 kB
demux_NNNNCAGAAATTNNNNN_unique_summary.tsv_summary_subtype.tsv
644 B
iCount xlsites
demux_NNNNCAGAAAGGNNNNN_unique.bed.gz
77.29 kB
demux_NNNNCAGAAAGGNNNNN_skipped.bam
10.83 MB
demux_NNNNCAGAAAGGNNNNN_unique.bedgraph
283.92 kB
demux_NNNNCAGAAAGGNNNNN_multi.bed.gz
547.13 kB
iCount xlsites
demux_NNNNTGAAATGCNNNNN_skipped.bam
14.68 MB
demux_NNNNTGAAATGCNNNNN_multi.bed.gz
931.40 kB
demux_NNNNTGAAATGCNNNNN_unique.bedgraph
523.58 kB
demux_NNNNTGAAATGCNNNNN_unique.bed.gz
139.24 kB
iCount xlsites
demux_NNNNTGAAAAGGNNNNN_unique.bedgraph
460.41 kB
demux_NNNNTGAAAAGGNNNNN_multi.bed.gz
841.57 kB
demux_NNNNTGAAAAGGNNNNN_unique.bed.gz
123.03 kB
demux_NNNNTGAAAAGGNNNNN_skipped.bam
10.52 MB
iCount xlsites
demux_NNNNCAGAAATTNNNNN_unique.bedgraph
400.13 kB
demux_NNNNCAGAAATTNNNNN_skipped.bam
19.99 MB
demux_NNNNCAGAAATTNNNNN_multi.bed.gz
774.86 kB
demux_NNNNCAGAAATTNNNNN_unique.bed.gz
107.98 kB
iCount xlsites
demux_NNNNTGAAAATTNNNNN_unique.bed.gz
180.60 kB
demux_NNNNTGAAAATTNNNNN_multi.bed.gz
1.25 MB
demux_NNNNTGAAAATTNNNNN_unique.bedgraph
680.38 kB
demux_NNNNTGAAAATTNNNNN_skipped.bam
18.98 MB
iCount xlsites
demux_NNNNCAGAATGCNNNNN_skipped.bam
11.26 MB
demux_NNNNCAGAATGCNNNNN_unique.bed.gz
74.84 kB
demux_NNNNCAGAATGCNNNNN_multi.bed.gz
513.33 kB
demux_NNNNCAGAATGCNNNNN_unique.bedgraph
275.82 kB
iCount xlsites
demux_NNNNTGAAATTANNNNN_unique.bed.gz
143.27 kB
demux_NNNNTGAAATTANNNNN_skipped.bam
17.31 MB
demux_NNNNTGAAATTANNNNN_multi.bed.gz
975.98 kB
demux_NNNNTGAAATTANNNNN_unique.bedgraph
541.68 kB
STAR
demux_NNNNCAGAAAGGNNNNN_unmapped.out.mate1.fastq.gz
36.53 MB
demux_NNNNCAGAAAGGNNNNN.bam.bai
2.16 MB
demux_NNNNCAGAAAGGNNNNN_SJ.out.tab
40.89 kB
demux_NNNNCAGAAAGGNNNNN.bam
356.90 MB
demux_NNNNCAGAAAGGNNNNN_stats.txt
1.81 kB
STAR
demux_NNNNTGAAATGCNNNNN.bam
454.12 MB
demux_NNNNTGAAATGCNNNNN.bam.bai
2.59 MB
demux_NNNNTGAAATGCNNNNN_unmapped.out.mate1.fastq.gz
48.43 MB
demux_NNNNTGAAATGCNNNNN_stats.txt
1.81 kB
demux_NNNNTGAAATGCNNNNN_SJ.out.tab
73.78 kB
STAR
demux_NNNNCAGAATTANNNNN_unmapped.out.mate1.fastq.gz
47.90 MB
demux_NNNNCAGAATTANNNNN.bam.bai
2.36 MB
demux_NNNNCAGAATTANNNNN_stats.txt
1.81 kB
demux_NNNNCAGAATTANNNNN.bam
470.28 MB
demux_NNNNCAGAATTANNNNN_SJ.out.tab
53.56 kB
STAR
demux_NNNNTGAAACGTNNNNN.bam.bai
2.75 MB
demux_NNNNTGAAACGTNNNNN_unmapped.out.mate1.fastq.gz
57.25 MB
demux_NNNNTGAAACGTNNNNN.bam
603.33 MB
demux_NNNNTGAAACGTNNNNN_SJ.out.tab
90.94 kB
demux_NNNNTGAAACGTNNNNN_stats.txt
1.81 kB
STAR
demux_NNNNTGAAACTGNNNNN_unmapped.out.mate1.fastq.gz
49.22 MB
demux_NNNNTGAAACTGNNNNN.bam.bai
2.63 MB
demux_NNNNTGAAACTGNNNNN.bam
484.00 MB
demux_NNNNTGAAACTGNNNNN_SJ.out.tab
80.28 kB
demux_NNNNTGAAACTGNNNNN_stats.txt
1.81 kB
STAR
demux_NNNNTGAAAAGGNNNNN_unmapped.out.mate1.fastq.gz
33.14 MB
demux_NNNNTGAAAAGGNNNNN.bam
330.18 MB
demux_NNNNTGAAAAGGNNNNN.bam.bai
2.49 MB
demux_NNNNTGAAAAGGNNNNN_stats.txt
1.80 kB
demux_NNNNTGAAAAGGNNNNN_SJ.out.tab
68.86 kB
STAR
demux_NNNNCAGAATGCNNNNN_unmapped.out.mate1.fastq.gz
37.46 MB
demux_NNNNCAGAATGCNNNNN.bam
343.54 MB
demux_NNNNCAGAATGCNNNNN_SJ.out.tab
37.81 kB
demux_NNNNCAGAATGCNNNNN.bam.bai
2.10 MB
demux_NNNNCAGAATGCNNNNN_stats.txt
1.81 kB
STAR
demux_NNNNCAGAAATTNNNNN_unmapped.out.mate1.fastq.gz
56.38 MB
demux_NNNNCAGAAATTNNNNN.bam.bai
2.46 MB
demux_NNNNCAGAAATTNNNNN_stats.txt
1.81 kB
demux_NNNNCAGAAATTNNNNN.bam
571.61 MB
demux_NNNNCAGAAATTNNNNN_SJ.out.tab
62.25 kB
STAR
demux_NNNNTGAAATTANNNNN_unmapped.out.mate1.fastq.gz
37.28 MB
demux_NNNNTGAAATTANNNNN.bam.bai
2.64 MB
demux_NNNNTGAAATTANNNNN.bam
388.89 MB
demux_NNNNTGAAATTANNNNN_SJ.out.tab
77.52 kB
demux_NNNNTGAAATTANNNNN_stats.txt
1.80 kB
Reads (single-end)
demux_NNNNCAGAAAGGNNNNN.fastq.gz
143.45 MB
fastqc
Directory
demux_NNNNCAGAAAGGNNNNN_fastqc.zip
508.63 kB
stderr.txt
1.05 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGAAATGCNNNNN.fastq.gz
183.73 MB
demux_NNNNTGAAATGCNNNNN_fastqc.zip
520.83 kB
stderr.txt
1.05 kB
Reads (single-end)
demux_NNNNTGAAACGTNNNNN.fastq.gz
232.87 MB
fastqc
Directory
demux_NNNNTGAAACGTNNNNN_fastqc.zip
488.41 kB
stderr.txt
1.05 kB
Reads (single-end)
demux_NNNNTGAAAATTNNNNN.fastq.gz
205.21 MB
fastqc
Directory
stderr.txt
1.05 kB
demux_NNNNTGAAAATTNNNNN_fastqc.zip
499.94 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGAAAAGGNNNNN_fastqc.zip
491.42 kB
stderr.txt
1.05 kB
demux_NNNNTGAAAAGGNNNNN.fastq.gz
130.65 MB
Reads (single-end)
fastqc
Directory
demux_NNNNCAGAAATTNNNNN.fastq.gz
227.61 MB
stderr.txt
1.05 kB
demux_NNNNCAGAAATTNNNNN_fastqc.zip
463.33 kB
Reads (single-end)
fastqc
Directory
demux_NNNNTGAAATTANNNNN_fastqc.zip
474.13 kB
stderr.txt
1.05 kB
demux_NNNNTGAAATTANNNNN.fastq.gz
155.61 MB
STAR
demux_NNNNGTTTCNNN.bam
331.12 MB
demux_NNNNGTTTCNNN.bam.bai
2.32 MB
demux_NNNNGTTTCNNN_unmapped.out.mate1.fastq.gz
65.10 MB
demux_NNNNGTTTCNNN_stats.txt
1.81 kB
demux_NNNNGTTTCNNN_SJ.out.tab
50.07 kB
STAR
demux_NNNNCCTGCNNN_stats.txt
1.80 kB
demux_NNNNCCTGCNNN.bam.bai
1.62 MB
demux_NNNNCCTGCNNN_unmapped.out.mate1.fastq.gz
3.51 MB
demux_NNNNCCTGCNNN.bam
19.60 MB
demux_NNNNCCTGCNNN_SJ.out.tab
20.93 kB
STAR
demux_NNNNATACGNNN.bam.bai
3.21 MB
demux_NNNNATACGNNN_unmapped.out.mate1.fastq.gz
88.42 MB
demux_NNNNATACGNNN.bam
1.16 GB
demux_NNNNATACGNNN_SJ.out.tab
136.11 kB
demux_NNNNATACGNNN_stats.txt
1.81 kB
STAR
demux_NNNNGATCGNNN.bam
1.07 GB
demux_NNNNGATCGNNN.bam.bai
2.77 MB
demux_NNNNGATCGNNN_unmapped.out.mate1.fastq.gz
73.26 MB
demux_NNNNGATCGNNN_stats.txt
1.81 kB
demux_NNNNGATCGNNN_SJ.out.tab
95.18 kB
STAR
demux_NNNNTCATCNNN_unmapped.out.mate1.fastq.gz
77.29 MB
demux_NNNNTCATCNNN.bam.bai
3.22 MB
demux_NNNNTCATCNNN.bam
716.49 MB
demux_NNNNTCATCNNN_SJ.out.tab
404.34 kB
demux_NNNNTCATCNNN_stats.txt
1.81 kB
iCount xlsites
demux_NNNNGTTTCNNN_multi.bed.gz
704.31 kB
demux_NNNNGTTTCNNN_unique.bed.gz
134.14 kB
demux_NNNNGTTTCNNN_skipped.bam
3.05 MB
Reads (single-end)
fastqc
Directory
stderr.txt
975 B
demux_NNNNTCGAGNNN_fastqc.zip
482.28 kB
demux_NNNNTCGAGNNN.fastq.gz
318.65 MB
Reads (single-end)
demux_NNNNGTTTCNNN.fastq.gz
202.20 MB
fastqc
Directory
demux_NNNNGTTTCNNN_fastqc.zip
431.61 kB
stderr.txt
975 B
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNTCATCNNN.fastq.gz
340.24 MB
demux_NNNNTCATCNNN_fastqc.zip
393.37 kB
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNCCTGCNNN.fastq.gz
11.70 MB
demux_NNNNCCTGCNNN_fastqc.zip
416.00 kB
Reads (single-end)
fastqc
Directory
demux_NNNNAACTCNNN_fastqc.zip
405.02 kB
stderr.txt
975 B
demux_NNNNAACTCNNN.fastq.gz
456.97 MB
Reads (single-end)
fastqc
Directory
demux_NNNNGGAGCNNN.fastq.gz
6.45 MB
demux_NNNNGGAGCNNN_fastqc.zip
424.87 kB
stderr.txt
975 B
Reads (single-end)
stderr.txt
975 B
fastqc
Directory
demux_NNNNGATCGNNN.fastq.gz
357.21 MB
demux_NNNNGATCGNNN_fastqc.zip
463.47 kB
Reads (single-end)
demux_NNNNATACGNNN.fastq.gz
396.27 MB
fastqc
Directory
stderr.txt
975 B
demux_NNNNATACGNNN_fastqc.zip
464.92 kB
iCount xlsites
demux_NNNNCCTGCNNN_skipped.bam
312.57 kB
demux_NNNNCCTGCNNN_multi.bed.gz
259.17 kB
demux_NNNNCCTGCNNN_unique.bed.gz
59.56 kB
iCount xlsites
demux_NNNNGATCGNNN_unique.bed.gz
178.37 kB
demux_NNNNGATCGNNN_skipped.bam
7.17 MB
demux_NNNNGATCGNNN_multi.bed.gz
902.10 kB
Reads (single-end)
fastqc
Directory
stderr.txt
1.19 kB
SAD533A92-A129_S16_L004_R1_001.fastq.gz
8.33 GB
SAD533A92-A129_S16_L004_R1_001_fastqc.zip
486.49 kB
STAR
demux_NNNNCACAGNNN_unmapped.out.mate1.fastq.gz
8.53 MB
demux_NNNNCACAGNNN.bam
31.20 MB
demux_NNNNCACAGNNN_stats.txt
1.80 kB
demux_NNNNCACAGNNN_SJ.out.tab
24.19 kB
demux_NNNNCACAGNNN.bam.bai
1.76 MB
STAR
demux_NNNNTCGAGNNN_unmapped.out.mate1.fastq.gz
78.23 MB
demux_NNNNTCGAGNNN.bam.bai
3.05 MB
demux_NNNNTCGAGNNN_stats.txt
1.81 kB
demux_NNNNTCGAGNNN_SJ.out.tab
134.49 kB
demux_NNNNTCGAGNNN.bam
1.03 GB
iCount xlsites
demux_NNNNGGAGCNNN_multi.bed.gz
116.35 kB
demux_NNNNGGAGCNNN_unique.bed.gz
21.12 kB
demux_NNNNGGAGCNNN_skipped.bam
190.30 kB
iCount xlsites
demux_NNNNAACTCNNN_skipped.bam
12.11 MB
demux_NNNNAACTCNNN_unique.bed.gz
1.14 MB
demux_NNNNAACTCNNN_multi.bed.gz
4.09 MB
iCount xlsites
demux_NNNNATACGNNN_skipped.bam
9.83 MB
demux_NNNNATACGNNN_unique.bed.gz
233.22 kB
demux_NNNNATACGNNN_multi.bed.gz
1.33 MB
3T3 miCLIP PUS1
Back to Archive