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Anja Trupej
July 16, 2022
5x Neg ctrl, 4x 47S

MOD4879A4_S134_L002

STAR
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.18 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.bam.bai
30.90 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.bam
22.92 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
57.93 kB
STAR
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
38.23 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.bam
6.52 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup.bam
526.21 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup.log
11.81 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.68 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.37 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
215.97 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
406.25 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
260.12 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
739.63 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
FASTQ file (single-end)
MOD4879A4_S134_L002_R1_001_subsample.fastq.gz
443.25 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A4_S134_L002_R1_001_subsample_fastqc.zip
842.19 kB
STAR
MOD4879A4_S134_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
438.69 MB
MOD4879A4_S134_L002_R1_001_subsample.bam.bai
200 B
MOD4879A4_S134_L002_R1_001_subsample.bam
783 B
MOD4879A4_S134_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A4_S134_L002_R1_001_subsample_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
1.45 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.09 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed.fastq.gz
353.11 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
38.63 MB
fastqc
Directory
STAR
MOD4879A4_S134_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
34.49 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed.bam.bai
3.37 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed.bam
613.55 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_SJ.out.tab
3.15 MB

MOD4879A7_S137_L002

featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
219.64 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
502.23 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
258.61 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
850.28 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
FASTQ file (single-end)
MOD4879A7_S137_L002_R1_001_subsample.fastq.gz
445.98 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A7_S137_L002_R1_001_subsample_fastqc.zip
828.25 kB
STAR
MOD4879A7_S137_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
441.16 MB
MOD4879A7_S137_L002_R1_001_subsample.bam.bai
200 B
MOD4879A7_S137_L002_R1_001_subsample.bam
1.01 kB
MOD4879A7_S137_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A7_S137_L002_R1_001_subsample_SJ.out.tab
0 B
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.13 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed.fastq.gz
405.60 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
44.12 MB
fastqc
Directory
STAR
MOD4879A7_S137_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
41.05 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed.bam.bai
2.84 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed.bam
595.05 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_SJ.out.tab
2.75 MB
STAR
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
25.22 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.bam.bai
25.52 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.bam
17.51 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
51.50 kB
STAR
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.66 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.bam
4.00 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
1.47 kB
UMI-tools dedup
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup.bam
522.27 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup.log
10.77 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.60 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup.bam.bai
2.84 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_stats.txt
395 B
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup.bw
34.57 MB

No Sample

featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
216.17 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
409.05 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
258.78 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
741.38 kB
Cutadapt (Corall RNA-Seq, single-end)
fastqc
Directory
cutadapt_report.txt
1.07 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed.fastq.gz
394.28 MB
DESeq2
de_file.tab.gz
631.67 kB
diffexp_deseq2.tab.gz
953.51 kB
count_matrix.tab.gz
226.24 kB
Gene set
Differential_expression_(case_vs._control)_DESeq2_logFC1.0_FDR0.05_up.tab.gz
124 B
Gene set
Differential_expression_(case_vs._control)_DESeq2_logFC1.0_FDR0.05_all.tab.gz
52.23 kB
Gene set
Differential_expression_(case_vs._control)_DESeq2_logFC1.0_FDR0.05_down.tab.gz
138 B
STAR
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.18 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.bam.bai
30.90 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.bam
22.92 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
57.93 kB
STAR
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
38.23 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.bam
6.52 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
16.50 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.bam.bai
31.91 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.bam
23.38 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
53.73 kB
UMI-tools dedup
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup.bam
557.38 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup.log
10.99 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.50 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup.bam.bai
2.83 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_stats.txt
395 B
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup.bw
37.75 MB
STAR
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
38.01 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.bam
6.37 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
40 B
UMI-tools dedup
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bam
388.39 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.log
9.79 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.71 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.47 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_stats.txt
393 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bw
13.71 MB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
219.64 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
502.23 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
258.61 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
850.28 kB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
216.62 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
436.81 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
258.38 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
770.67 kB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
219.33 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
455.64 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
265.73 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
801.63 kB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
212.80 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
389.74 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
248.17 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
709.19 kB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
223.96 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
513.87 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
269.89 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
878.69 kB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
212.55 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
376.02 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
248.73 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
693.82 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
UMI-tools dedup
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup.bam
526.21 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup.log
11.81 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.68 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.37 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
215.97 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
406.25 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
260.12 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
739.63 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
FASTQ file (single-end)
MOD4879A5_S135_L002_R1_001_subsample.fastq.gz
430.81 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A5_S135_L002_R1_001_subsample_fastqc.zip
838.14 kB
FASTQ file (single-end)
MOD4879A7_S137_L002_R1_001_subsample.fastq.gz
445.98 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A7_S137_L002_R1_001_subsample_fastqc.zip
828.25 kB
FASTQ file (single-end)
MOD4879A3_S133_L002_R1_001_subsample.fastq.gz
473.60 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A3_S133_L002_R1_001_subsample_fastqc.zip
829.48 kB
FASTQ file (single-end)
MOD4879A2_S132_L002_R1_001_subsample.fastq.gz
434.53 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A2_S132_L002_R1_001_subsample_fastqc.zip
827.58 kB
FASTQ file (single-end)
MOD4879A6_S136_L002_R1_001_subsample.fastq.gz
445.76 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A6_S136_L002_R1_001_subsample_fastqc.zip
827.02 kB
FASTQ file (single-end)
MOD4879A1_S131_L002_R1_001_subsample.fastq.gz
437.80 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A1_S131_L002_R1_001_subsample_fastqc.zip
829.58 kB
FASTQ file (single-end)
MOD4879A4_S134_L002_R1_001_subsample.fastq.gz
443.25 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A4_S134_L002_R1_001_subsample_fastqc.zip
842.19 kB
FASTQ file (single-end)
MOD4879A8_S138_L002_R1_001_subsample.fastq.gz
434.61 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A8_S138_L002_R1_001_subsample_fastqc.zip
841.49 kB
FASTQ file (single-end)
MOD4879A9_S139_L002_R1_001_subsample.fastq.gz
447.30 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A9_S139_L002_R1_001_subsample_fastqc.zip
840.77 kB
STAR
MOD4879A6_S136_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
186.85 MB
MOD4879A6_S136_L002_R1_001_subsample.bam.bai
3.13 MB
MOD4879A6_S136_L002_R1_001_subsample.bam
357.19 MB
MOD4879A6_S136_L002_R1_001_subsample_stats.txt
1.81 kB
MOD4879A6_S136_L002_R1_001_subsample_SJ.out.tab
3.44 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.18 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.fastq.gz
375.22 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
41.21 MB
fastqc
Directory
STAR
MOD4879A6_S136_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
441.22 MB
MOD4879A6_S136_L002_R1_001_subsample.bam.bai
200 B
MOD4879A6_S136_L002_R1_001_subsample.bam
917 B
MOD4879A6_S136_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A6_S136_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.04 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam.bai
34.30 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam
23.98 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
57.20 kB
STAR
MOD4879A2_S132_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
429.94 MB
MOD4879A2_S132_L002_R1_001_subsample.bam.bai
272 B
MOD4879A2_S132_L002_R1_001_subsample.bam
982 B
MOD4879A2_S132_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A2_S132_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
40.76 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam
2.55 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A1_S131_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
432.97 MB
MOD4879A1_S131_L002_R1_001_subsample.bam.bai
200 B
MOD4879A1_S131_L002_R1_001_subsample.bam
929 B
MOD4879A1_S131_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A1_S131_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A7_S137_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
441.16 MB
MOD4879A7_S137_L002_R1_001_subsample.bam.bai
200 B
MOD4879A7_S137_L002_R1_001_subsample.bam
1.01 kB
MOD4879A7_S137_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A7_S137_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A3_S133_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
468.93 MB
MOD4879A3_S133_L002_R1_001_subsample.bam.bai
416 B
MOD4879A3_S133_L002_R1_001_subsample.bam
1.64 kB
MOD4879A3_S133_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A3_S133_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
52.01 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.bam.bai
3.47 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.bam
526.70 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_SJ.out.tab
2.79 MB
Samtools idxstats
idxstat_report.txt
3.29 kB
UMI-tools dedup
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bam
387.60 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.log
9.73 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.70 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.46 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_stats.txt
393 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bw
13.70 MB
STAR
MOD4879A4_S134_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
438.69 MB
MOD4879A4_S134_L002_R1_001_subsample.bam.bai
200 B
MOD4879A4_S134_L002_R1_001_subsample.bam
783 B
MOD4879A4_S134_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A4_S134_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A9_S139_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
442.54 MB
MOD4879A9_S139_L002_R1_001_subsample.bam.bai
56 B
MOD4879A9_S139_L002_R1_001_subsample.bam
601 B
MOD4879A9_S139_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A9_S139_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A5_S135_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
426.23 MB
MOD4879A5_S135_L002_R1_001_subsample.bam.bai
56 B
MOD4879A5_S135_L002_R1_001_subsample.bam
601 B
MOD4879A5_S135_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A8_S138_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
429.82 MB
MOD4879A8_S138_L002_R1_001_subsample.bam.bai
56 B
MOD4879A8_S138_L002_R1_001_subsample.bam
601 B
MOD4879A8_S138_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A9_S139_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
442.54 MB
MOD4879A9_S139_L002_R1_001_subsample.bam.bai
56 B
MOD4879A9_S139_L002_R1_001_subsample.bam
601 B
MOD4879A9_S139_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A9_S139_L002_R1_001_subsample_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
212.84 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
376.90 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
249.30 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
694.54 kB
STAR
MOD4879A8_S138_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
429.82 MB
MOD4879A8_S138_L002_R1_001_subsample.bam.bai
56 B
MOD4879A8_S138_L002_R1_001_subsample.bam
601 B
MOD4879A8_S138_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A5_S135_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
426.23 MB
MOD4879A5_S135_L002_R1_001_subsample.bam.bai
56 B
MOD4879A5_S135_L002_R1_001_subsample.bam
601 B
MOD4879A5_S135_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A9_S139_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
442.54 MB
MOD4879A9_S139_L002_R1_001_subsample.bam.bai
56 B
MOD4879A9_S139_L002_R1_001_subsample.bam
601 B
MOD4879A9_S139_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A9_S139_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A8_S138_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
429.82 MB
MOD4879A8_S138_L002_R1_001_subsample.bam.bai
56 B
MOD4879A8_S138_L002_R1_001_subsample.bam
601 B
MOD4879A8_S138_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A5_S135_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
426.23 MB
MOD4879A5_S135_L002_R1_001_subsample.bam.bai
56 B
MOD4879A5_S135_L002_R1_001_subsample.bam
601 B
MOD4879A5_S135_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_subsample_SJ.out.tab
0 B
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.11 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed.fastq.gz
401.95 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
44.32 MB
fastqc
Directory
STAR
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.88 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.bam.bai
344 B
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.bam
1.74 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
23.27 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.bam.bai
28.40 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.bam
19.65 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
56.22 kB
STAR
MOD4879A2_S132_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
42.20 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed.bam.bai
3.29 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed.bam
556.33 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_SJ.out.tab
3.22 MB
Samtools idxstats
idxstat_report.txt
1.45 kB
UMI-tools dedup
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup.bam
459.76 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup.log
10.22 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.68 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.29 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_stats.txt
395 B
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup.bw
22.83 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
219.00 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
448.32 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
264.48 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
793.10 kB
Samtools idxstats
idxstat_report.txt
1.45 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Samtools idxstats
idxstat_report.txt
1.45 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Samtools idxstats
idxstat_report.txt
1.43 kB
Samtools idxstats
idxstat_report.txt
1.46 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
UMI-tools dedup
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup.bam
530.07 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup.log
11.97 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.63 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.39 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_stats.txt
395 B
Samtools idxstats
idxstat_report.txt
1.45 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Samtools idxstats
idxstat_report.txt
1.45 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Samtools idxstats
idxstat_report.txt
1.45 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.11 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed.fastq.gz
398.20 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.13 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed.fastq.gz
405.60 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.18 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.fastq.gz
375.22 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.19 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed.fastq.gz
387.67 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.08 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed.fastq.gz
417.50 MB
fastqc
Directory
STAR
MOD4879A3_S133_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
32.46 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed.bam.bai
2.83 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed.bam
617.39 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_SJ.out.tab
3.10 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.09 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed.fastq.gz
353.11 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.12 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed.fastq.gz
347.06 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
42.52 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
41.79 MB
fastqc
Directory
STAR
MOD4879A1_S131_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
50.64 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed.bam.bai
3.38 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed.bam
557.69 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_SJ.out.tab
3.01 MB
Subsample FASTQ (single-end)
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
44.12 MB
fastqc
Directory
STAR
MOD4879A6_S136_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
36.58 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed.bam.bai
3.22 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed.bam
612.93 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_SJ.out.tab
3.28 MB
STAR
MOD4879A7_S137_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
41.05 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed.bam.bai
2.84 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed.bam
595.05 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_SJ.out.tab
2.75 MB
Subsample FASTQ (single-end)
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
43.21 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
41.21 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
43.94 MB
fastqc
Directory
STAR
MOD4879A9_S139_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
61.98 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed.bam.bai
3.50 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed.bam
491.98 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_SJ.out.tab
2.72 MB
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
51.40 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.bam.bai
3.48 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.bam
527.84 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_SJ.out.tab
2.80 MB
Subsample FASTQ (single-end)
MOD4879A4_S134_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
38.63 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
38.41 MB
fastqc
Directory
STAR
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
18.04 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.bam.bai
34.89 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.bam
23.61 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
59.56 kB
STAR
MOD4879A4_S134_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
34.49 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed.bam.bai
3.37 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed.bam
613.55 MB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A4_S134_L002_R1_001_subsample_trimmed_SJ.out.tab
3.15 MB
STAR
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.04 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.bam
2.32 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
20.73 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.bam.bai
29.68 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.bam
21.03 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
61.09 kB
STAR
MOD4879A5_S135_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
33.42 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed.bam.bai
3.39 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed.bam
610.29 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_SJ.out.tab
3.16 MB
STAR
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
25.22 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.bam.bai
25.52 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.bam
17.51 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
51.50 kB
STAR
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
41.40 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.bam
2.99 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.66 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled.bam
4.00 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
21.78 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.bam.bai
29.24 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.bam
20.44 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
52.53 kB
STAR
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.77 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.bam
2.60 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.78 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
40 B
Samtools idxstats
idxstat_report.txt
1.47 kB
UMI-tools dedup
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup.bam
456.60 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup.log
10.50 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.72 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.38 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_stats.txt
395 B
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup.bw
18.77 MB
UMI-tools dedup
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup.bam
522.27 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup.log
10.77 kB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.60 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup.bam.bai
2.84 MB
MOD4879A7_S137_L002_R1_001_subsample_trimmed_stats.txt
395 B
MOD4879A7_S137_L002_R1_001_subsample_trimmed_dedup.bw
34.57 MB
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.04 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam.bai
34.41 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam
23.99 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
57.20 kB
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
40.76 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam
2.55 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
29.59 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.bam.bai
19.02 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.bam
13.75 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
46.80 kB
STAR
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.52 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.bam
4.66 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup.bam
536.20 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup.log
11.48 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.63 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.23 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_stats.txt
395 B
UMI-tools dedup
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup.bam
329.56 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup.log
8.71 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.52 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.49 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_stats.txt
393 B
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup.bw
15.11 MB

MOD4879A1_S131_L002

featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
216.62 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
436.81 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
258.38 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
770.67 kB
FASTQ file (single-end)
MOD4879A1_S131_L002_R1_001_subsample.fastq.gz
437.80 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A1_S131_L002_R1_001_subsample_fastqc.zip
829.58 kB
STAR
MOD4879A1_S131_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
432.97 MB
MOD4879A1_S131_L002_R1_001_subsample.bam.bai
200 B
MOD4879A1_S131_L002_R1_001_subsample.bam
929 B
MOD4879A1_S131_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A1_S131_L002_R1_001_subsample_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
1.45 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.11 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed.fastq.gz
398.20 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
42.52 MB
fastqc
Directory
STAR
MOD4879A1_S131_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
50.64 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed.bam.bai
3.38 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed.bam
557.69 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_SJ.out.tab
3.01 MB
STAR
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
18.04 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.bam.bai
34.89 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.bam
23.61 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
59.56 kB
STAR
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.04 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled.bam
2.32 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup.bam
456.60 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup.log
10.50 kB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.72 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.38 MB
MOD4879A1_S131_L002_R1_001_subsample_trimmed_stats.txt
395 B
MOD4879A1_S131_L002_R1_001_subsample_trimmed_dedup.bw
18.77 MB

MOD4879A8_S138_L002

UMI-tools dedup
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bam
388.39 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.log
9.79 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.71 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.47 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_stats.txt
393 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bw
13.71 MB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
212.55 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
376.02 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
248.73 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
693.82 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
FASTQ file (single-end)
MOD4879A8_S138_L002_R1_001_subsample.fastq.gz
434.61 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A8_S138_L002_R1_001_subsample_fastqc.zip
841.49 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.18 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.fastq.gz
375.22 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
41.21 MB
fastqc
Directory
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.04 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam.bai
34.30 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam
23.98 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
57.20 kB
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
40.76 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam
2.55 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
52.01 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.bam.bai
3.47 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.bam
526.70 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_SJ.out.tab
2.79 MB
Samtools idxstats
idxstat_report.txt
3.29 kB
UMI-tools dedup
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bam
387.60 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.log
9.73 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.70 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.46 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_stats.txt
393 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup.bw
13.70 MB
STAR
MOD4879A8_S138_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
429.82 MB
MOD4879A8_S138_L002_R1_001_subsample.bam.bai
56 B
MOD4879A8_S138_L002_R1_001_subsample.bam
601 B
MOD4879A8_S138_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
212.84 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
376.90 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
249.30 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
694.54 kB
STAR
MOD4879A8_S138_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
429.82 MB
MOD4879A8_S138_L002_R1_001_subsample.bam.bai
56 B
MOD4879A8_S138_L002_R1_001_subsample.bam
601 B
MOD4879A8_S138_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A8_S138_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
429.82 MB
MOD4879A8_S138_L002_R1_001_subsample.bam.bai
56 B
MOD4879A8_S138_L002_R1_001_subsample.bam
601 B
MOD4879A8_S138_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
1.43 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.18 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.fastq.gz
375.22 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
41.21 MB
fastqc
Directory
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
51.40 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.bam.bai
3.48 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed.bam
527.84 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_SJ.out.tab
2.80 MB
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.04 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam.bai
34.41 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam
23.99 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
57.20 kB
STAR
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
40.76 MB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled.bam
2.55 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A8_S138_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B

MOD4879A2_S132_L002

FASTQ file (single-end)
MOD4879A2_S132_L002_R1_001_subsample.fastq.gz
434.53 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A2_S132_L002_R1_001_subsample_fastqc.zip
827.58 kB
STAR
MOD4879A2_S132_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
429.94 MB
MOD4879A2_S132_L002_R1_001_subsample.bam.bai
272 B
MOD4879A2_S132_L002_R1_001_subsample.bam
982 B
MOD4879A2_S132_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A2_S132_L002_R1_001_subsample_SJ.out.tab
0 B
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.11 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed.fastq.gz
401.95 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
44.32 MB
fastqc
Directory
STAR
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.88 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.bam.bai
344 B
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.bam
1.74 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
23.27 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.bam.bai
28.40 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled.bam
19.65 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
56.22 kB
STAR
MOD4879A2_S132_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
42.20 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed.bam.bai
3.29 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed.bam
556.33 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_SJ.out.tab
3.22 MB
Samtools idxstats
idxstat_report.txt
1.45 kB
UMI-tools dedup
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup.bam
459.76 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup.log
10.22 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.68 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.29 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_stats.txt
395 B
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup.bw
22.83 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
219.00 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
448.32 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
264.48 kB
MOD4879A2_S132_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
793.10 kB

MOD4879A9_S139_L002

featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
212.80 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
389.74 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
248.17 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
709.19 kB
FASTQ file (single-end)
MOD4879A9_S139_L002_R1_001_subsample.fastq.gz
447.30 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A9_S139_L002_R1_001_subsample_fastqc.zip
840.77 kB
STAR
MOD4879A9_S139_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
442.54 MB
MOD4879A9_S139_L002_R1_001_subsample.bam.bai
56 B
MOD4879A9_S139_L002_R1_001_subsample.bam
601 B
MOD4879A9_S139_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A9_S139_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A9_S139_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
442.54 MB
MOD4879A9_S139_L002_R1_001_subsample.bam.bai
56 B
MOD4879A9_S139_L002_R1_001_subsample.bam
601 B
MOD4879A9_S139_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A9_S139_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A9_S139_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
442.54 MB
MOD4879A9_S139_L002_R1_001_subsample.bam.bai
56 B
MOD4879A9_S139_L002_R1_001_subsample.bam
601 B
MOD4879A9_S139_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A9_S139_L002_R1_001_subsample_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
1.45 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.19 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed.fastq.gz
387.67 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
43.21 MB
fastqc
Directory
STAR
MOD4879A9_S139_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
61.98 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed.bam.bai
3.50 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed.bam
491.98 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_SJ.out.tab
2.72 MB
STAR
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
21.78 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.bam.bai
29.24 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.bam
20.44 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
52.53 kB
STAR
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.77 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled.bam
2.60 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.78 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
40 B
UMI-tools dedup
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup.bam
329.56 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup.log
8.71 kB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.52 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.49 MB
MOD4879A9_S139_L002_R1_001_subsample_trimmed_stats.txt
393 B
MOD4879A9_S139_L002_R1_001_subsample_trimmed_dedup.bw
15.11 MB

MOD4879A6_S136_L002

featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
219.33 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
455.64 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
265.73 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
801.63 kB
FASTQ file (single-end)
MOD4879A6_S136_L002_R1_001_subsample.fastq.gz
445.76 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A6_S136_L002_R1_001_subsample_fastqc.zip
827.02 kB
STAR
MOD4879A6_S136_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
186.85 MB
MOD4879A6_S136_L002_R1_001_subsample.bam.bai
3.13 MB
MOD4879A6_S136_L002_R1_001_subsample.bam
357.19 MB
MOD4879A6_S136_L002_R1_001_subsample_stats.txt
1.81 kB
MOD4879A6_S136_L002_R1_001_subsample_SJ.out.tab
3.44 MB
STAR
MOD4879A6_S136_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
441.22 MB
MOD4879A6_S136_L002_R1_001_subsample.bam.bai
200 B
MOD4879A6_S136_L002_R1_001_subsample.bam
917 B
MOD4879A6_S136_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A6_S136_L002_R1_001_subsample_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
1.45 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.07 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed.fastq.gz
394.28 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
41.79 MB
fastqc
Directory
STAR
MOD4879A6_S136_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
36.58 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed.bam.bai
3.22 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed.bam
612.93 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_SJ.out.tab
3.28 MB
STAR
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
20.73 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.bam.bai
29.68 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.bam
21.03 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
61.09 kB
STAR
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
41.40 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled.bam
2.99 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup.bam
536.20 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup.log
11.48 kB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.63 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.23 MB
MOD4879A6_S136_L002_R1_001_subsample_trimmed_stats.txt
395 B

MOD4879A3_S133_L002

UMI-tools dedup
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup.bam
557.38 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup.log
10.99 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.50 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup.bam.bai
2.83 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_stats.txt
395 B
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup.bw
37.75 MB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
223.96 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
513.87 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
269.89 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
878.69 kB
FASTQ file (single-end)
MOD4879A3_S133_L002_R1_001_subsample.fastq.gz
473.60 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A3_S133_L002_R1_001_subsample_fastqc.zip
829.48 kB
STAR
MOD4879A3_S133_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
468.93 MB
MOD4879A3_S133_L002_R1_001_subsample.bam.bai
416 B
MOD4879A3_S133_L002_R1_001_subsample.bam
1.64 kB
MOD4879A3_S133_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A3_S133_L002_R1_001_subsample_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
1.46 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.08 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed.fastq.gz
417.50 MB
fastqc
Directory
STAR
MOD4879A3_S133_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
32.46 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed.bam.bai
2.83 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed.bam
617.39 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_SJ.out.tab
3.10 MB
Subsample FASTQ (single-end)
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
43.94 MB
fastqc
Directory
STAR
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
29.59 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.bam.bai
19.02 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.bam
13.75 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
46.80 kB
STAR
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.52 MB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled.bam
4.66 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A3_S133_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
0 B

MOD4879A5_S135_L002

STAR
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
16.50 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.bam.bai
31.91 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.bam
23.38 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
53.73 kB
STAR
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_unmapped.out.mate1.fastq.gz
38.01 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.bam.bai
416 B
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.bam
6.37 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled_SJ.out.tab
40 B
FASTQ file (single-end)
MOD4879A5_S135_L002_R1_001_subsample.fastq.gz
430.81 MB
fastqc
Directory
stderr.txt
1.43 kB
MOD4879A5_S135_L002_R1_001_subsample_fastqc.zip
838.14 kB
featureCounts
featureCounts_rc.txt.summary
370 B
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_rc.tab.gz
216.17 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_tpm.tab.gz
409.05 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_cpm.tab.gz
258.78 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_expressions.txt.gz
741.38 kB
STAR
MOD4879A5_S135_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
426.23 MB
MOD4879A5_S135_L002_R1_001_subsample.bam.bai
56 B
MOD4879A5_S135_L002_R1_001_subsample.bam
601 B
MOD4879A5_S135_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A5_S135_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
426.23 MB
MOD4879A5_S135_L002_R1_001_subsample.bam.bai
56 B
MOD4879A5_S135_L002_R1_001_subsample.bam
601 B
MOD4879A5_S135_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_subsample_SJ.out.tab
0 B
STAR
MOD4879A5_S135_L002_R1_001_subsample_unmapped.out.mate1.fastq.gz
426.23 MB
MOD4879A5_S135_L002_R1_001_subsample.bam.bai
56 B
MOD4879A5_S135_L002_R1_001_subsample.bam
601 B
MOD4879A5_S135_L002_R1_001_subsample_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_subsample_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup.bam
530.07 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup.log
11.97 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup_stats.zip
4.63 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_dedup.bam.bai
3.39 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_stats.txt
395 B
Samtools idxstats
idxstat_report.txt
1.45 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.12 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed.fastq.gz
347.06 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A5_S135_L002_R1_001_subsample_trimmed_downsampled.fastq.gz
38.41 MB
fastqc
Directory
STAR
MOD4879A5_S135_L002_R1_001_subsample_trimmed_unmapped.out.mate1.fastq.gz
33.42 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed.bam.bai
3.39 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed.bam
610.29 MB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_stats.txt
1.81 kB
MOD4879A5_S135_L002_R1_001_subsample_trimmed_SJ.out.tab
3.16 MB