Back to Archive

Folder iconHyPro Metaphase_Signle end

Anja Trupej
June 10, 2022
5x Negative control, 4x 47S

No Sample

FASTQ file (single-end)
stderr.txt
1.17 kB
MOD4879A8_S138_L002_R1_001_fastqc.zip
837.37 kB
MOD4879A8_S138_L002_R1_001.fastq.gz
905.21 MB
fastqc
Directory
FASTQ file (single-end)
MOD4879A6_S136_L002_R1_001.fastq.gz
1.42 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A6_S136_L002_R1_001_fastqc.zip
825.96 kB
featureCounts
featureCounts_rc.txt.summary
362 B
MOD4879A3_S133_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.66 MB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_rc.tab.gz
236.91 kB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_tpm.tab.gz
579.30 kB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_cpm.tab.gz
309.58 kB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_expressions.txt.gz
1009.03 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
FASTQ file (single-end)
MOD4879A9_S139_L002_R1_001.fastq.gz
832.52 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A9_S139_L002_R1_001_fastqc.zip
839.97 kB
FASTQ file (single-end)
MOD4879A1_S131_L002_R1_001.fastq.gz
1013.06 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A1_S131_L002_R1_001_fastqc.zip
827.46 kB
FASTQ file (single-end)
MOD4879A3_S133_L002_R1_001.fastq.gz
2.11 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A3_S133_L002_R1_001_fastqc.zip
827.08 kB
FASTQ file (single-end)
MOD4879A2_S132_L002_R1_001.fastq.gz
648.67 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A2_S132_L002_R1_001_fastqc.zip
827.04 kB
FASTQ file (single-end)
MOD4879A7_S137_L002_R1_001.fastq.gz
836.09 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A7_S137_L002_R1_001_fastqc.zip
828.05 kB
FASTQ file (single-end)
MOD4879A4_S134_L002_R1_001.fastq.gz
2.19 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A4_S134_L002_R1_001_fastqc.zip
841.17 kB
FASTQ file (single-end)
MOD4879A5_S135_L002_R1_001.fastq.gz
1.82 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A5_S135_L002_R1_001_fastqc.zip
835.85 kB
Samtools idxstats
idxstat_report.txt
1.46 kB
Subsample FASTQ (single-end)
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.fastq.gz
38.42 MB
fastqc
Directory
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Samtools idxstats
idxstat_report.txt
1.49 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.20 kB
MOD4879A9_S139_L002_R1_001_trimmed.fastq.gz
593.75 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
1.50 kB
UMI-tools dedup
MOD4879A1_S131_L002_R1_001_trimmed_dedup.bam
744.11 MB
MOD4879A1_S131_L002_R1_001_trimmed_dedup.log
15.07 kB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_stats.zip
5.95 MB
MOD4879A1_S131_L002_R1_001_trimmed_dedup.bam.bai
3.07 MB
MOD4879A1_S131_L002_R1_001_trimmed_stats.txt
395 B
Samtools idxstats
idxstat_report.txt
1.47 kB
Samtools idxstats
idxstat_report.txt
1.51 kB
Samtools idxstats
idxstat_report.txt
1.45 kB
Samtools idxstats
idxstat_report.txt
1.49 kB
Samtools idxstats
idxstat_report.txt
1.46 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.15 kB
MOD4879A5_S135_L002_R1_001_trimmed.fastq.gz
1.17 GB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.15 kB
MOD4879A4_S134_L002_R1_001_trimmed.fastq.gz
1.41 GB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.12 kB
MOD4879A1_S131_L002_R1_001_trimmed.fastq.gz
729.78 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.11 kB
MOD4879A3_S133_L002_R1_001_trimmed.fastq.gz
1.57 GB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.13 kB
MOD4879A7_S137_L002_R1_001_trimmed.fastq.gz
621.65 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.10 kB
MOD4879A2_S132_L002_R1_001_trimmed.fastq.gz
487.34 MB
fastqc
Directory
STAR
MOD4879A9_S139_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
95.00 MB
MOD4879A9_S139_L002_R1_001_trimmed.bam.bai
3.41 MB
MOD4879A9_S139_L002_R1_001_trimmed.bam
750.71 MB
MOD4879A9_S139_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A9_S139_L002_R1_001_trimmed_SJ.out.tab
3.25 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.19 kB
MOD4879A8_S138_L002_R1_001_trimmed.fastq.gz
624.53 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.fastq.gz
43.22 MB
fastqc
Directory
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.11 kB
MOD4879A6_S136_L002_R1_001_trimmed.fastq.gz
1.01 GB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.fastq.gz
38.62 MB
fastqc
Directory
STAR
MOD4879A1_S131_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
92.92 MB
MOD4879A1_S131_L002_R1_001_trimmed.bam.bai
3.09 MB
MOD4879A1_S131_L002_R1_001_trimmed.bam
1.01 GB
MOD4879A1_S131_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A1_S131_L002_R1_001_trimmed_SJ.out.tab
3.97 MB
Subsample FASTQ (single-end)
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.fastq.gz
42.50 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.fastq.gz
43.94 MB
fastqc
Directory
STAR
MOD4879A5_S135_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
116.62 MB
MOD4879A5_S135_L002_R1_001_trimmed.bam.bai
2.77 MB
MOD4879A5_S135_L002_R1_001_trimmed.bam
2.10 GB
MOD4879A5_S135_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD4879A5_S135_L002_R1_001_trimmed_SJ.out.tab
5.72 MB
STAR
MOD4879A4_S134_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
141.63 MB
MOD4879A4_S134_L002_R1_001_trimmed.bam.bai
2.78 MB
MOD4879A4_S134_L002_R1_001_trimmed.bam
2.45 GB
MOD4879A4_S134_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD4879A4_S134_L002_R1_001_trimmed_SJ.out.tab
6.05 MB
Subsample FASTQ (single-end)
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.fastq.gz
44.11 MB
fastqc
Directory
STAR
MOD4879A7_S137_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
63.05 MB
MOD4879A7_S137_L002_R1_001_trimmed.bam.bai
2.47 MB
MOD4879A7_S137_L002_R1_001_trimmed.bam
929.36 MB
MOD4879A7_S137_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A7_S137_L002_R1_001_trimmed_SJ.out.tab
3.57 MB
Subsample FASTQ (single-end)
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.fastq.gz
44.34 MB
fastqc
Directory
STAR
MOD4879A2_S132_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
51.26 MB
MOD4879A2_S132_L002_R1_001_trimmed.bam.bai
3.19 MB
MOD4879A2_S132_L002_R1_001_trimmed.bam
682.23 MB
MOD4879A2_S132_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A2_S132_L002_R1_001_trimmed_SJ.out.tab
3.53 MB
Subsample FASTQ (single-end)
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.fastq.gz
41.22 MB
fastqc
Directory
STAR
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
21.84 MB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.bam.bai
29.26 kB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.bam
20.41 MB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_SJ.out.tab
53.55 kB
STAR
MOD4879A3_S133_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
125.61 MB
MOD4879A3_S133_L002_R1_001_trimmed.bam.bai
2.32 MB
MOD4879A3_S133_L002_R1_001_trimmed.bam
2.22 GB
MOD4879A3_S133_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD4879A3_S133_L002_R1_001_trimmed_SJ.out.tab
5.97 MB
STAR
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.52 MB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.bam
4.87 kB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.78 MB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.bam
2.37 kB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A8_S138_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
85.69 MB
MOD4879A8_S138_L002_R1_001_trimmed.bam.bai
3.44 MB
MOD4879A8_S138_L002_R1_001_trimmed.bam
887.20 MB
MOD4879A8_S138_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A8_S138_L002_R1_001_trimmed_SJ.out.tab
3.46 MB
Subsample FASTQ (single-end)
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.fastq.gz
41.79 MB
fastqc
Directory
STAR
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
16.48 MB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.bam.bai
32.29 kB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.bam
23.44 MB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_SJ.out.tab
56.15 kB
STAR
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
38.02 MB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.bam
6.60 kB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_SJ.out.tab
40 B
STAR
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.16 MB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.bam.bai
30.96 kB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.bam
22.94 MB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_SJ.out.tab
56.51 kB
STAR
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
38.22 MB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.bam
6.16 kB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A6_S136_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
96.36 MB
MOD4879A6_S136_L002_R1_001_trimmed.bam.bai
2.68 MB
MOD4879A6_S136_L002_R1_001_trimmed.bam
1.59 GB
MOD4879A6_S136_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD4879A6_S136_L002_R1_001_trimmed_SJ.out.tab
5.12 MB
STAR
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.99 MB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.bam.bai
34.94 kB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.bam
23.65 MB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_SJ.out.tab
59.55 kB
STAR
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.02 MB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.bam
1.42 kB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A9_S139_L002_R1_001_trimmed_dedup.bam
418.75 MB
MOD4879A9_S139_L002_R1_001_trimmed_dedup.log
10.25 kB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_stats.zip
5.25 MB
MOD4879A9_S139_L002_R1_001_trimmed_dedup.bam.bai
3.37 MB
MOD4879A9_S139_L002_R1_001_trimmed_stats.txt
393 B
MOD4879A9_S139_L002_R1_001_trimmed_dedup.bw
18.46 MB
STAR
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
29.58 MB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.bam.bai
19.35 kB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.bam
13.73 MB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_SJ.out.tab
46.07 kB
STAR
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
25.23 MB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.bam.bai
25.73 kB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.bam
17.52 MB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_SJ.out.tab
52.06 kB
STAR
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
23.27 MB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.bam.bai
28.26 kB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.bam
19.63 MB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_SJ.out.tab
59.79 kB
STAR
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.65 MB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.bam
3.68 kB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.90 MB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.bam
2.13 kB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
STAR
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.06 MB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.bam.bai
34.57 kB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.bam
23.97 MB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_SJ.out.tab
52.81 kB
UMI-tools dedup
MOD4879A2_S132_L002_R1_001_trimmed_dedup.bam
543.84 MB
MOD4879A2_S132_L002_R1_001_trimmed_dedup.log
11.39 kB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_stats.zip
5.08 MB
MOD4879A2_S132_L002_R1_001_trimmed_dedup.bam.bai
3.19 MB
MOD4879A2_S132_L002_R1_001_trimmed_stats.txt
395 B
MOD4879A2_S132_L002_R1_001_trimmed_dedup.bw
26.14 MB
STAR
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
40.77 MB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.bam
2.52 kB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_SJ.out.tab
80 B
STAR
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
20.72 MB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.bam.bai
29.65 kB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.bam
21.04 MB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_SJ.out.tab
62.89 kB
STAR
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
41.39 MB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.bam
2.65 kB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A7_S137_L002_R1_001_trimmed_dedup.bam
770.19 MB
MOD4879A7_S137_L002_R1_001_trimmed_dedup.log
14.19 kB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_stats.zip
5.47 MB
MOD4879A7_S137_L002_R1_001_trimmed_dedup.bam.bai
2.47 MB
MOD4879A7_S137_L002_R1_001_trimmed_stats.txt
395 B
UMI-tools dedup
MOD4879A8_S138_L002_R1_001_trimmed_dedup.bam
550.43 MB
MOD4879A8_S138_L002_R1_001_trimmed_dedup.log
12.55 kB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_stats.zip
5.70 MB
MOD4879A8_S138_L002_R1_001_trimmed_dedup.bam.bai
3.41 MB
MOD4879A8_S138_L002_R1_001_trimmed_stats.txt
395 B
Samtools idxstats
idxstat_report.txt
1.50 kB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A9_S139_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_rc.tab.gz
214.91 kB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_tpm.tab.gz
402.86 kB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_cpm.tab.gz
253.70 kB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_expressions.txt.gz
731.32 kB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A1_S131_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_rc.tab.gz
221.53 kB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_tpm.tab.gz
470.90 kB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_cpm.tab.gz
273.59 kB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_expressions.txt.gz
828.57 kB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A2_S132_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_rc.tab.gz
220.46 kB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_tpm.tab.gz
460.23 kB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_cpm.tab.gz
270.59 kB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_expressions.txt.gz
812.94 kB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A7_S137_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_rc.tab.gz
224.63 kB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_tpm.tab.gz
529.78 kB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_cpm.tab.gz
269.88 kB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_expressions.txt.gz
897.91 kB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A8_S138_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_rc.tab.gz
215.48 kB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_tpm.tab.gz
392.62 kB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_cpm.tab.gz
258.66 kB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_expressions.txt.gz
723.37 kB
UMI-tools dedup
MOD4879A3_S133_L002_R1_001_trimmed_dedup.bam
1.58 GB
MOD4879A3_S133_L002_R1_001_trimmed_dedup.log
26.37 kB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_stats.zip
7.07 MB
MOD4879A3_S133_L002_R1_001_trimmed_dedup.bam.bai
2.22 MB
MOD4879A3_S133_L002_R1_001_trimmed_stats.txt
396 B
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB

Negativna kontrola_S137

FASTQ file (single-end)
MOD4879A7_S137_L002_R1_001.fastq.gz
836.09 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A7_S137_L002_R1_001_fastqc.zip
828.05 kB
Samtools idxstats
idxstat_report.txt
1.49 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.13 kB
MOD4879A7_S137_L002_R1_001_trimmed.fastq.gz
621.65 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.fastq.gz
44.11 MB
fastqc
Directory
STAR
MOD4879A7_S137_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
63.05 MB
MOD4879A7_S137_L002_R1_001_trimmed.bam.bai
2.47 MB
MOD4879A7_S137_L002_R1_001_trimmed.bam
929.36 MB
MOD4879A7_S137_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A7_S137_L002_R1_001_trimmed_SJ.out.tab
3.57 MB
STAR
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
25.23 MB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.bam.bai
25.73 kB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.bam
17.52 MB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_SJ.out.tab
52.06 kB
STAR
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.65 MB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A7_S137_L002_R1_001_trimmed_downsampled.bam
3.68 kB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A7_S137_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A7_S137_L002_R1_001_trimmed_dedup.bam
770.19 MB
MOD4879A7_S137_L002_R1_001_trimmed_dedup.log
14.19 kB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_stats.zip
5.47 MB
MOD4879A7_S137_L002_R1_001_trimmed_dedup.bam.bai
2.47 MB
MOD4879A7_S137_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A7_S137_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_rc.tab.gz
224.63 kB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_tpm.tab.gz
529.78 kB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_cpm.tab.gz
269.88 kB
MOD4879A7_S137_L002_R1_001_trimmed_dedup_expressions.txt.gz
897.91 kB

Negativna kontrola_S138

FASTQ file (single-end)
MOD4879A8_S138_L002_R1_001.fastq.gz
905.21 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A8_S138_L002_R1_001_fastqc.zip
837.37 kB
Samtools idxstats
idxstat_report.txt
1.45 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.19 kB
MOD4879A8_S138_L002_R1_001_trimmed.fastq.gz
624.53 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.fastq.gz
41.22 MB
fastqc
Directory
STAR
MOD4879A8_S138_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
85.69 MB
MOD4879A8_S138_L002_R1_001_trimmed.bam.bai
3.44 MB
MOD4879A8_S138_L002_R1_001_trimmed.bam
887.20 MB
MOD4879A8_S138_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A8_S138_L002_R1_001_trimmed_SJ.out.tab
3.46 MB
STAR
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.06 MB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.bam.bai
34.57 kB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.bam
23.97 MB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_SJ.out.tab
52.81 kB
STAR
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
40.77 MB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A8_S138_L002_R1_001_trimmed_downsampled.bam
2.52 kB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD4879A8_S138_L002_R1_001_trimmed_downsampled_SJ.out.tab
80 B
UMI-tools dedup
MOD4879A8_S138_L002_R1_001_trimmed_dedup.bam
550.43 MB
MOD4879A8_S138_L002_R1_001_trimmed_dedup.log
12.55 kB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_stats.zip
5.70 MB
MOD4879A8_S138_L002_R1_001_trimmed_dedup.bam.bai
3.41 MB
MOD4879A8_S138_L002_R1_001_trimmed_stats.txt
395 B
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A8_S138_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_rc.tab.gz
215.48 kB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_tpm.tab.gz
392.62 kB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_cpm.tab.gz
258.66 kB
MOD4879A8_S138_L002_R1_001_trimmed_dedup_expressions.txt.gz
723.37 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB

Negativna kontrola_S139

FASTQ file (single-end)
MOD4879A9_S139_L002_R1_001.fastq.gz
832.52 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A9_S139_L002_R1_001_fastqc.zip
839.97 kB
Samtools idxstats
idxstat_report.txt
1.46 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.20 kB
MOD4879A9_S139_L002_R1_001_trimmed.fastq.gz
593.75 MB
fastqc
Directory
STAR
MOD4879A9_S139_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
95.00 MB
MOD4879A9_S139_L002_R1_001_trimmed.bam.bai
3.41 MB
MOD4879A9_S139_L002_R1_001_trimmed.bam
750.71 MB
MOD4879A9_S139_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A9_S139_L002_R1_001_trimmed_SJ.out.tab
3.25 MB
Subsample FASTQ (single-end)
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.fastq.gz
43.22 MB
fastqc
Directory
STAR
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
21.84 MB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.bam.bai
29.26 kB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.bam
20.41 MB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_SJ.out.tab
53.55 kB
STAR
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.78 MB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A9_S139_L002_R1_001_trimmed_downsampled.bam
2.37 kB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A9_S139_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A9_S139_L002_R1_001_trimmed_dedup.bam
418.75 MB
MOD4879A9_S139_L002_R1_001_trimmed_dedup.log
10.25 kB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_stats.zip
5.25 MB
MOD4879A9_S139_L002_R1_001_trimmed_dedup.bam.bai
3.37 MB
MOD4879A9_S139_L002_R1_001_trimmed_stats.txt
393 B
MOD4879A9_S139_L002_R1_001_trimmed_dedup.bw
18.46 MB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A9_S139_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.63 MB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_rc.tab.gz
214.91 kB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_tpm.tab.gz
402.86 kB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_cpm.tab.gz
253.70 kB
MOD4879A9_S139_L002_R1_001_trimmed_dedup_expressions.txt.gz
731.32 kB

Sonda 47S_S135

FASTQ file (single-end)
MOD4879A5_S135_L002_R1_001.fastq.gz
1.82 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A5_S135_L002_R1_001_fastqc.zip
835.85 kB
Subsample FASTQ (single-end)
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.fastq.gz
38.42 MB
fastqc
Directory
Samtools idxstats
idxstat_report.txt
1.49 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.15 kB
MOD4879A5_S135_L002_R1_001_trimmed.fastq.gz
1.17 GB
fastqc
Directory
STAR
MOD4879A5_S135_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
116.62 MB
MOD4879A5_S135_L002_R1_001_trimmed.bam.bai
2.77 MB
MOD4879A5_S135_L002_R1_001_trimmed.bam
2.10 GB
MOD4879A5_S135_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD4879A5_S135_L002_R1_001_trimmed_SJ.out.tab
5.72 MB
STAR
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
16.48 MB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.bam.bai
32.29 kB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.bam
23.44 MB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_SJ.out.tab
56.15 kB
STAR
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
38.02 MB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A5_S135_L002_R1_001_trimmed_downsampled.bam
6.60 kB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A5_S135_L002_R1_001_trimmed_downsampled_SJ.out.tab
40 B

Sonda 47S_S133

featureCounts
featureCounts_rc.txt.summary
362 B
MOD4879A3_S133_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.66 MB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_rc.tab.gz
236.91 kB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_tpm.tab.gz
579.30 kB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_cpm.tab.gz
309.58 kB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_expressions.txt.gz
1009.03 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
FASTQ file (single-end)
MOD4879A3_S133_L002_R1_001.fastq.gz
2.11 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A3_S133_L002_R1_001_fastqc.zip
827.08 kB
Samtools idxstats
idxstat_report.txt
1.51 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.11 kB
MOD4879A3_S133_L002_R1_001_trimmed.fastq.gz
1.57 GB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.fastq.gz
43.94 MB
fastqc
Directory
STAR
MOD4879A3_S133_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
125.61 MB
MOD4879A3_S133_L002_R1_001_trimmed.bam.bai
2.32 MB
MOD4879A3_S133_L002_R1_001_trimmed.bam
2.22 GB
MOD4879A3_S133_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD4879A3_S133_L002_R1_001_trimmed_SJ.out.tab
5.97 MB
STAR
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
29.58 MB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.bam.bai
19.35 kB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.bam
13.73 MB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_SJ.out.tab
46.07 kB
STAR
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.52 MB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A3_S133_L002_R1_001_trimmed_downsampled.bam
4.87 kB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A3_S133_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A3_S133_L002_R1_001_trimmed_dedup.bam
1.58 GB
MOD4879A3_S133_L002_R1_001_trimmed_dedup.log
26.37 kB
MOD4879A3_S133_L002_R1_001_trimmed_dedup_stats.zip
7.07 MB
MOD4879A3_S133_L002_R1_001_trimmed_dedup.bam.bai
2.22 MB
MOD4879A3_S133_L002_R1_001_trimmed_stats.txt
396 B

Sonda 47S_S136

FASTQ file (single-end)
MOD4879A6_S136_L002_R1_001.fastq.gz
1.42 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A6_S136_L002_R1_001_fastqc.zip
825.96 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.11 kB
MOD4879A6_S136_L002_R1_001_trimmed.fastq.gz
1.01 GB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.fastq.gz
41.79 MB
fastqc
Directory
STAR
MOD4879A6_S136_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
96.36 MB
MOD4879A6_S136_L002_R1_001_trimmed.bam.bai
2.68 MB
MOD4879A6_S136_L002_R1_001_trimmed.bam
1.59 GB
MOD4879A6_S136_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD4879A6_S136_L002_R1_001_trimmed_SJ.out.tab
5.12 MB
STAR
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
20.72 MB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.bam.bai
29.65 kB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.bam
21.04 MB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_SJ.out.tab
62.89 kB
STAR
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
41.39 MB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A6_S136_L002_R1_001_trimmed_downsampled.bam
2.65 kB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_stats.txt
1.78 kB
MOD4879A6_S136_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
Samtools idxstats
idxstat_report.txt
1.50 kB

Negativna kontrola_S131

FASTQ file (single-end)
MOD4879A1_S131_L002_R1_001.fastq.gz
1013.06 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A1_S131_L002_R1_001_fastqc.zip
827.46 kB
UMI-tools dedup
MOD4879A1_S131_L002_R1_001_trimmed_dedup.bam
744.11 MB
MOD4879A1_S131_L002_R1_001_trimmed_dedup.log
15.07 kB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_stats.zip
5.95 MB
MOD4879A1_S131_L002_R1_001_trimmed_dedup.bam.bai
3.07 MB
MOD4879A1_S131_L002_R1_001_trimmed_stats.txt
395 B
Samtools idxstats
idxstat_report.txt
1.47 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.12 kB
MOD4879A1_S131_L002_R1_001_trimmed.fastq.gz
729.78 MB
fastqc
Directory
STAR
MOD4879A1_S131_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
92.92 MB
MOD4879A1_S131_L002_R1_001_trimmed.bam.bai
3.09 MB
MOD4879A1_S131_L002_R1_001_trimmed.bam
1.01 GB
MOD4879A1_S131_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A1_S131_L002_R1_001_trimmed_SJ.out.tab
3.97 MB
Subsample FASTQ (single-end)
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.fastq.gz
42.50 MB
fastqc
Directory
STAR
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.99 MB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.bam.bai
34.94 kB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.bam
23.65 MB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_SJ.out.tab
59.55 kB
STAR
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
42.02 MB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A1_S131_L002_R1_001_trimmed_downsampled.bam
1.42 kB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A1_S131_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A1_S131_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_rc.tab.gz
221.53 kB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_tpm.tab.gz
470.90 kB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_cpm.tab.gz
273.59 kB
MOD4879A1_S131_L002_R1_001_trimmed_dedup_expressions.txt.gz
828.57 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB

Sonda 47S_S134

FASTQ file (single-end)
MOD4879A4_S134_L002_R1_001.fastq.gz
2.19 GB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A4_S134_L002_R1_001_fastqc.zip
841.17 kB
Samtools idxstats
idxstat_report.txt
1.50 kB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.15 kB
MOD4879A4_S134_L002_R1_001_trimmed.fastq.gz
1.41 GB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.fastq.gz
38.62 MB
fastqc
Directory
STAR
MOD4879A4_S134_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
141.63 MB
MOD4879A4_S134_L002_R1_001_trimmed.bam.bai
2.78 MB
MOD4879A4_S134_L002_R1_001_trimmed.bam
2.45 GB
MOD4879A4_S134_L002_R1_001_trimmed_stats.txt
1.82 kB
MOD4879A4_S134_L002_R1_001_trimmed_SJ.out.tab
6.05 MB
STAR
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
17.16 MB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.bam.bai
30.96 kB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.bam
22.94 MB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_SJ.out.tab
56.51 kB
STAR
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
38.22 MB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A4_S134_L002_R1_001_trimmed_downsampled.bam
6.16 kB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A4_S134_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B

Negativna kontrola_S132

FASTQ file (single-end)
MOD4879A2_S132_L002_R1_001.fastq.gz
648.67 MB
fastqc
Directory
stderr.txt
1.17 kB
MOD4879A2_S132_L002_R1_001_fastqc.zip
827.04 kB
Samtools idxstats
idxstat_report.txt
1.46 kB
MultiQC
multiqc_data
Directory
multiqc_report.html
1.17 MB
Cutadapt (Corall RNA-Seq, single-end)
cutadapt_report.txt
1.10 kB
MOD4879A2_S132_L002_R1_001_trimmed.fastq.gz
487.34 MB
fastqc
Directory
Subsample FASTQ (single-end)
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.fastq.gz
44.34 MB
fastqc
Directory
STAR
MOD4879A2_S132_L002_R1_001_trimmed_unmapped.out.mate1.fastq.gz
51.26 MB
MOD4879A2_S132_L002_R1_001_trimmed.bam.bai
3.19 MB
MOD4879A2_S132_L002_R1_001_trimmed.bam
682.23 MB
MOD4879A2_S132_L002_R1_001_trimmed_stats.txt
1.81 kB
MOD4879A2_S132_L002_R1_001_trimmed_SJ.out.tab
3.53 MB
STAR
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
23.27 MB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.bam.bai
28.26 kB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.bam
19.63 MB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_stats.txt
1.79 kB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_SJ.out.tab
59.79 kB
STAR
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_unmapped.out.mate1.fastq.gz
43.90 MB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.bam.bai
416 B
MOD4879A2_S132_L002_R1_001_trimmed_downsampled.bam
2.13 kB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_stats.txt
1.77 kB
MOD4879A2_S132_L002_R1_001_trimmed_downsampled_SJ.out.tab
0 B
UMI-tools dedup
MOD4879A2_S132_L002_R1_001_trimmed_dedup.bam
543.84 MB
MOD4879A2_S132_L002_R1_001_trimmed_dedup.log
11.39 kB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_stats.zip
5.08 MB
MOD4879A2_S132_L002_R1_001_trimmed_dedup.bam.bai
3.19 MB
MOD4879A2_S132_L002_R1_001_trimmed_stats.txt
395 B
MOD4879A2_S132_L002_R1_001_trimmed_dedup.bw
26.14 MB
featureCounts
featureCounts_rc.txt.summary
360 B
MOD4879A2_S132_L002_R1_001_trimmed_dedup_featureCounts_rc.txt.gz
3.64 MB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_rc.tab.gz
220.46 kB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_tpm.tab.gz
460.23 kB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_cpm.tab.gz
270.59 kB
MOD4879A2_S132_L002_R1_001_trimmed_dedup_expressions.txt.gz
812.94 kB