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apibot
May 25, 2022

LIN28A-WT-FLAG_2_ESC_2iLIF_20220524_MM

Paraclu
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
299 B
STAR
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
2.49 MB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed.bam.bai
4.16 MB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed.bam
24.32 MB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed_stats.txt
1.79 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
40.22 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed.bw
7.20 kB
iCount xlsites
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
1.55 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
125.69 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
2.62 MB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
128.51 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
437.56 kB
PEKA
4mer analysis of lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
141.26 kB
FASTQ file (CLIP)
lin28a-wt-flag-2-esc-2ilif-20220524-mm.fastq.gz
5.62 MB
fastqc
Directory
lin28a-wt-flag-2-esc-2ilif-20220524-mm_fastqc.zip
835.56 kB
iCount summary
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
589 B
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
843 B
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
476.89 kB
iCount RNA-maps
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
375.83 kB
Cutadapt (single-end)
report.txt
673 B
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed.fastq.gz
5.53 MB
fastqc
Directory

LIN28A-S200A_2_ESC_LIF-CHIR-FGF_20220524_MM

iCount xlsites
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
1.89 kB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
954.73 kB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.76 MB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
959.31 kB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
3.40 MB
STAR
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
24.97 MB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.59 MB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam
489.46 MB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
103.13 kB
iCount summary
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
615 B
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
941 B
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.22 MB
iCount RNA-maps
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
414.43 kB
PEKA
4mer analysis of lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
409.02 kB
FASTQ file (CLIP)
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm.fastq.gz
121.70 MB
fastqc
Directory
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_fastqc.zip
1.07 MB
Paraclu
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
121.67 kB
Cutadapt (single-end)
report.txt
679 B
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
122.26 MB
fastqc
Directory

LIN28A_1_ESC_2iLIF_20220524_MM

iCount xlsites
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
19.13 kB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
4.42 MB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
10.67 MB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.06 MB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
20.11 MB
Cutadapt (single-end)
report.txt
666 B
lin28a-1-esc-2ilif-20220524-mm_trimmed.fastq.gz
567.48 MB
fastqc
Directory
STAR
lin28a-1-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
160.40 MB
lin28a-1-esc-2ilif-20220524-mm_trimmed.bam.bai
3.52 MB
lin28a-1-esc-2ilif-20220524-mm_trimmed.bam
797.86 MB
lin28a-1-esc-2ilif-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-1-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
1.82 MB
iCount summary
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
632 B
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.31 MB
FASTQ file (CLIP)
lin28a-1-esc-2ilif-20220524-mm.fastq.gz
557.64 MB
fastqc
Directory
lin28a-1-esc-2ilif-20220524-mm_fastqc.zip
650.26 kB
Paraclu
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
146.45 kB
iCount RNA-maps
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
1.71 MB
PEKA
4mer analysis of lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
640.57 kB

LIN28A-WT_3_ESC_LIF-CHIR_20220524_MM

iCount xlsites
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
16.26 kB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
6.19 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
12.14 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
7.06 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
27.88 MB
Cutadapt (single-end)
report.txt
672 B
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed.fastq.gz
645.77 MB
fastqc
Directory
PEKA
5mer analysis of lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.50 MB
PEKA
5mer analysis of lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.49 MB
STAR
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
207.66 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.58 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed.bam
923.12 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.73 MB
iCount summary
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
633 B
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.36 MB
iCount RNA-maps
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.76 MB
PEKA
4mer analysis of lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
635.67 kB
FASTQ file (CLIP)
lin28a-wt-3-esc-lif-chir-20220524-mm.fastq.gz
638.27 MB
fastqc
Directory
lin28a-wt-3-esc-lif-chir-20220524-mm_fastqc.zip
623.62 kB
Paraclu
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
93.90 kB

LIN28A-WT_2_ESC_LIF-CHIR_20220524_MM

iCount xlsites
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
15.27 kB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
10.28 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
17.76 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
11.43 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
47.03 MB
Cutadapt (single-end)
report.txt
672 B
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed.fastq.gz
663.52 MB
fastqc
Directory
PEKA
5mer analysis of lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.55 MB
PEKA
5mer analysis of lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.56 MB
STAR
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
209.96 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.41 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed.bam
983.05 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
2.12 MB
iCount summary
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
631 B
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.51 MB
Paraclu
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
110.64 kB
PEKA
4mer analysis of lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
662.76 kB
FASTQ file (CLIP)
lin28a-wt-2-esc-lif-chir-20220524-mm.fastq.gz
645.36 MB
fastqc
Directory
lin28a-wt-2-esc-lif-chir-20220524-mm_fastqc.zip
609.71 kB
iCount RNA-maps
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
2.09 MB

LIN28A-WT_1new_ESC_2iLIF_20220524_MM

iCount summary
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
614 B
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1009 B
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.91 MB
Paraclu
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
61.55 kB
STAR
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
26.35 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed.bam.bai
4.35 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed.bam
280.44 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
397.15 kB
iCount xlsites
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
2.85 kB
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
1.34 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
10.61 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
1.40 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
5.21 MB
PEKA
4mer analysis of lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
461.51 kB
FASTQ file (CLIP)
lin28a-wt-1new-esc-2ilif-20220524-mm.fastq.gz
110.56 MB
fastqc
Directory
lin28a-wt-1new-esc-2ilif-20220524-mm_fastqc.zip
971.75 kB
iCount RNA-maps
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
668.04 kB
Cutadapt (single-end)
report.txt
672 B
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed.fastq.gz
90.04 MB
fastqc
Directory

LIN28A-WT_2new_ESC_2iLIF_20220524_MM

iCount summary
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
616 B
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1017 B
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.21 MB
Paraclu
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
246.14 kB
STAR
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
23.89 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed.bam.bai
4.17 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed.bam
299.89 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
565.96 kB
iCount xlsites
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
2.26 kB
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
2.27 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.27 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
2.32 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
9.22 MB
PEKA
4mer analysis of lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
504.99 kB
FASTQ file (CLIP)
lin28a-wt-2new-esc-2ilif-20220524-mm.fastq.gz
124.00 MB
fastqc
Directory
lin28a-wt-2new-esc-2ilif-20220524-mm_fastqc.zip
969.16 kB
iCount RNA-maps
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
864.95 kB
Cutadapt (single-end)
report.txt
673 B
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed.fastq.gz
117.83 MB
fastqc
Directory

LIN28A-WT-FLAG_1_ESC_2iLIF_20220524_MM

iCount RNA-maps
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
540.32 kB
Paraclu
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
39.39 kB
iCount summary
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
616 B
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1006 B
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.51 MB
STAR
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
19.49 MB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed.bam.bai
4.54 MB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed.bam
281.60 MB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
239.32 kB
iCount xlsites
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
1.81 kB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
810.08 kB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.84 MB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
821.26 kB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
2.92 MB
PEKA
4mer analysis of lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
415.20 kB
FASTQ file (CLIP)
lin28a-wt-flag-1-esc-2ilif-20220524-mm.fastq.gz
65.11 MB
fastqc
Directory
lin28a-wt-flag-1-esc-2ilif-20220524-mm_fastqc.zip
1006.84 kB
Cutadapt (single-end)
report.txt
673 B
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed.fastq.gz
65.56 MB
fastqc
Directory

No Sample

Cutadapt (single-end)
report.txt
677 B
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
80.93 MB
fastqc
Directory
STAR
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
2.08 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
150.30 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.48 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed.bam
780.05 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
Cutadapt (single-end)
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
145.72 MB
report.txt
676 B
fastqc
Directory
iCount xlsites
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
1.56 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
372.02 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
5.53 MB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
377.15 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
1.30 MB
iCount xlsites
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
2.33 kB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
1.07 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
11.27 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
1.07 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
3.95 MB
iCount xlsites
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
13.39 kB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
5.07 MB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
12.74 MB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.61 MB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
22.90 MB
iCount xlsites
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
12.17 kB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
4.79 MB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
10.04 MB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.40 MB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
21.46 MB
iCount summary
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
614 B
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1009 B
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.91 MB
Paraclu
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
61.55 kB
Paraclu
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
299 B
iCount xlsites
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
19.55 kB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
5.05 MB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
11.85 MB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.78 MB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
23.10 MB
iCount xlsites
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
15.27 kB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
10.28 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
17.76 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
11.43 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
47.03 MB
iCount xlsites
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
19.13 kB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
4.42 MB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
10.67 MB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.06 MB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
20.11 MB
iCount xlsites
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_skipped.bam
2.12 kB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single.bed.gz
1.30 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
11.35 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_reads_single.bed.gz
1.31 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single.bedgraph
4.93 MB
iCount xlsites
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
2.18 kB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
1.41 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
7.41 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
1.48 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
5.72 MB
iCount xlsites
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
15.19 kB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
6.85 MB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
16.03 MB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
7.59 MB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
31.35 MB
iCount xlsites
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
13.01 kB
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
787.00 kB
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
2.73 MB
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
900.20 kB
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
2.98 MB
iCount xlsites
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
13.75 kB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
4.39 MB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.98 MB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
4.88 MB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
19.83 MB
iCount summary
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
616 B
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1017 B
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.21 MB
iCount RNA-maps
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
540.32 kB
Paraclu
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
39.39 kB
Paraclu
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
246.14 kB
iCount summary
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
616 B
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1006 B
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.51 MB
iCount xlsites
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
16.26 kB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
6.19 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
12.14 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
7.06 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
27.88 MB
iCount xlsites
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
1.75 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
271.35 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
887.36 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
308.06 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
1.04 MB
iCount xlsites
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
1.89 kB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
954.73 kB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.76 MB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
959.31 kB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
3.40 MB
Cutadapt (single-end)
report.txt
681 B
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed.fastq.gz
108.69 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
670 B
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed.fastq.gz
360.54 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
666 B
lin28a-2-esc-2ilif-20220524-mm_trimmed.fastq.gz
654.16 MB
fastqc
Directory
STAR
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
26.35 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed.bam.bai
4.35 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed.bam
280.44 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
397.15 kB
Cutadapt (single-end)
report.txt
666 B
lin28a-1-esc-2ilif-20220524-mm_trimmed.fastq.gz
567.48 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
669 B
lin28a-3-esc-lif-chir-20220524-mm_trimmed.fastq.gz
548.23 MB
fastqc
Directory
STAR
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
2.49 MB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed.bam.bai
4.16 MB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed.bam
24.32 MB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed_stats.txt
1.79 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
40.22 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed.bw
7.20 kB
Cutadapt (single-end)
report.txt
669 B
lin28a-2-esc-lif-chir-20220524-mm_trimmed.fastq.gz
508.61 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
669 B
lin28a-1-esc-lif-chir-20220524-mm_trimmed.fastq.gz
444.30 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
672 B
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed.fastq.gz
645.77 MB
fastqc
Directory
STAR
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
23.89 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed.bam.bai
4.17 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed.bam
299.89 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
565.96 kB
STAR
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
19.49 MB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed.bam.bai
4.54 MB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed.bam
281.60 MB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
239.32 kB
Cutadapt (single-end)
report.txt
672 B
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed.fastq.gz
663.52 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
672 B
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed.fastq.gz
530.50 MB
fastqc
Directory
STAR
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
21.76 MB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.57 MB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam
374.07 MB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
170.77 kB
Cutadapt (single-end)
report.txt
675 B
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed.fastq.gz
481.08 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
673 B
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed.fastq.gz
96.20 MB
fastqc
Directory
STAR
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
21.37 MB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.59 MB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam
324.92 MB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
140.07 kB
STAR
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
24.97 MB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.59 MB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam
489.46 MB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
103.13 kB
STAR
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
7.68 MB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.53 MB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam
100.07 MB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
51.32 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed.bw
9.96 kB
STAR
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
29.07 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed.bam.bai
4.42 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed.bam
416.98 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed_SJ.out.tab
297.03 kB
STAR
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
36.54 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.53 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam
602.71 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
174.08 kB
STAR
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
21.03 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.30 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam
230.60 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
438.35 kB
STAR
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
157.78 MB
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed.bam.bai
3.50 MB
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed.bam
630.60 MB
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
1.37 MB
STAR
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
134.77 MB
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed.bam.bai
3.59 MB
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed.bam
529.77 MB
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
297.33 kB
STAR
lin28a-2-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
191.35 MB
lin28a-2-esc-2ilif-20220524-mm_trimmed.bam.bai
3.50 MB
lin28a-2-esc-2ilif-20220524-mm_trimmed.bam
931.52 MB
lin28a-2-esc-2ilif-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-2-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
1.98 MB
PEKA
5mer analysis of lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.55 MB
iCount xlsites
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
2.85 kB
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
1.34 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
10.61 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
1.40 MB
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
5.21 MB
iCount xlsites
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
1.55 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
125.69 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
2.62 MB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
128.51 kB
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
437.56 kB
PEKA
5mer analysis of lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.50 MB
Cutadapt (single-end)
report.txt
675 B
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed.fastq.gz
520.24 MB
fastqc
Directory
PEKA
5mer analysis of lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.49 MB
PEKA
5mer analysis of lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.38 MB
PEKA
5mer analysis of lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.50 MB
PEKA
5mer analysis of lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.56 MB
PEKA
5mer analysis of lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.37 MB
STAR
lin28a-1-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
160.40 MB
lin28a-1-esc-2ilif-20220524-mm_trimmed.bam.bai
3.52 MB
lin28a-1-esc-2ilif-20220524-mm_trimmed.bam
797.86 MB
lin28a-1-esc-2ilif-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-1-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
1.82 MB
PEKA
5mer analysis of lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
781.70 kB
PEKA
5mer analysis of lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.37 MB
STAR
lin28a-3-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
197.69 MB
lin28a-3-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.47 MB
lin28a-3-esc-lif-chir-20220524-mm_trimmed.bam
853.11 MB
lin28a-3-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-3-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.74 MB
STAR
lin28a-1-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
177.14 MB
lin28a-1-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.37 MB
lin28a-1-esc-lif-chir-20220524-mm_trimmed.bam
699.93 MB
lin28a-1-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-1-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.76 MB
STAR
lin28a-2-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
175.18 MB
lin28a-2-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.32 MB
lin28a-2-esc-lif-chir-20220524-mm_trimmed.bam
798.54 MB
lin28a-2-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-2-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
2.08 MB
STAR
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
207.66 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.58 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed.bam
923.12 MB
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-wt-3-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.73 MB
iCount xlsites
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
2.26 kB
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
2.27 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.27 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
2.32 MB
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
9.22 MB
STAR
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
209.96 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.41 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed.bam
983.05 MB
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-wt-2-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
2.12 MB
iCount xlsites
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
1.81 kB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
810.08 kB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.84 MB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
821.26 kB
lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
2.92 MB
STAR
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
13.16 MB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed.bam.bai
2.51 MB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed.bam
57.18 MB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
105.12 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed.bw
5.49 kB
STAR
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
177.21 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.67 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed.bam
811.19 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.35 MB
STAR
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
157.83 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.66 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed.bam
711.18 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.19 MB
STAR
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
26.94 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed.bam.bai
3.61 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed.bam
245.21 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed_SJ.out.tab
230.34 kB
iCount xlsites
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
1.74 kB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
885.93 kB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
11.35 MB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
894.41 kB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
3.14 MB
iCount xlsites
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
9.36 kB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
7.88 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
14.60 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
8.85 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
36.16 MB
iCount xlsites
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
1.99 kB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
741.64 kB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.02 MB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
748.04 kB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
2.62 MB
iCount xlsites
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
17.18 kB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
3.95 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
8.51 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
4.54 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
17.46 MB
iCount xlsites
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
10.81 kB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
4.73 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.70 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.40 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
21.19 MB
iCount RNA-maps
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single.tar.gz
604.61 kB
iCount summary
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
613 B
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1005 B
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.43 MB
iCount xlsites
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_skipped.bam
2.76 kB
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single.bed.gz
3.18 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
12.61 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_reads_single.bed.gz
3.24 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single.bedgraph
12.73 MB
Paraclu
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
62.15 kB
PEKA
4mer analysis of lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
421.30 kB
iCount summary
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
634 B
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.44 MB
iCount summary
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
611 B
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1001 B
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.21 MB
iCount RNA-maps
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
440.64 kB
iCount summary
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
597 B
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
982 B
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
785.69 kB
iCount RNA-maps
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
394.17 kB
iCount summary
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
615 B
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
941 B
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.22 MB
iCount RNA-maps
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
414.43 kB
Paraclu
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single_peaks.bed.gz
71.06 kB
iCount summary
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
615 B
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1017 B
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.54 MB
iCount summary
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single_summary_type.tsv
611 B
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1007 B
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.84 MB
Paraclu
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
62.66 kB
PEKA
4mer analysis of lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
141.26 kB
Paraclu
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
13.79 kB
iCount summary
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
628 B
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.38 MB
PEKA
4mer analysis of lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
663.01 kB
iCount summary
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
632 B
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.31 MB
iCount summary
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
631 B
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.30 MB
iCount summary
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
632 B
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.46 MB
Paraclu
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
136.50 kB
PEKA
4mer analysis of lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
461.51 kB
iCount summary
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
633 B
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.36 MB
iCount RNA-maps
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.76 MB
iCount summary
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
599 B
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
989 B
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.02 MB
Paraclu
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
2.38 kB
iCount summary
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
631 B
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.51 MB
Paraclu
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
110.64 kB
PEKA
4mer analysis of lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
662.76 kB
PEKA
4mer analysis of lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
504.99 kB
iCount summary
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
628 B
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.20 MB
PEKA
4mer analysis of lin28a-wt-flag-1-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
415.20 kB
Paraclu
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
51.35 kB
Paraclu
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
44.64 kB
iCount RNA-maps
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.49 MB
iCount summary
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
627 B
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.15 MB
iCount summary
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single_summary_type.tsv
617 B
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1018 B
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.19 MB
Paraclu
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single_peaks.bed.gz
260.17 kB
PEKA
4mer analysis of lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
405.99 kB
PEKA
4mer analysis of lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
409.02 kB
PEKA
4mer analysis of lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome.tar.gz
451.98 kB
PEKA
4mer analysis of lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
468.11 kB
PEKA
4mer analysis of lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
430.10 kB
PEKA
4mer analysis of lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
618.93 kB
PEKA
4mer analysis of lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
643.17 kB
PEKA
4mer analysis of lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
623.83 kB
PEKA
4mer analysis of lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
635.67 kB
PEKA
4mer analysis of lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
658.02 kB
PEKA
4mer analysis of lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
603.29 kB
PEKA
4mer analysis of lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
616.46 kB
PEKA
4mer analysis of lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome.tar.gz
494.56 kB
FASTQ file (CLIP)
lin28a-wt-esc-2ilif-prob-20220524-mm.fastq.gz
100.82 MB
fastqc
Directory
lin28a-wt-esc-2ilif-prob-20220524-mm_fastqc.zip
702.49 kB
FASTQ file (CLIP)
lin28a-wt-2-esc-lif-chir-20220524-mm.fastq.gz
645.36 MB
fastqc
Directory
lin28a-wt-2-esc-lif-chir-20220524-mm_fastqc.zip
609.71 kB
FASTQ file (CLIP)
lin28a-s200a-3-esc-lif-chir-20220524-mm.fastq.gz
35.01 MB
fastqc
Directory
lin28a-s200a-3-esc-lif-chir-20220524-mm_fastqc.zip
675.32 kB
FASTQ file (CLIP)
lin28a-s200a-2-esc-lif-chir-20220524-mm.fastq.gz
514.08 MB
fastqc
Directory
lin28a-s200a-2-esc-lif-chir-20220524-mm_fastqc.zip
627.20 kB
FASTQ file (CLIP)
lin28a-2-esc-lif-chir-20220524-mm.fastq.gz
505.10 MB
fastqc
Directory
lin28a-2-esc-lif-chir-20220524-mm_fastqc.zip
633.50 kB
FASTQ file (CLIP)
lin28a-2-esc-2ilif-20220524-mm.fastq.gz
649.89 MB
fastqc
Directory
lin28a-2-esc-2ilif-20220524-mm_fastqc.zip
664.10 kB
FASTQ file (CLIP)
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm.fastq.gz
121.70 MB
fastqc
Directory
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_fastqc.zip
1.07 MB
FASTQ file (CLIP)
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm.fastq.gz
89.59 MB
fastqc
Directory
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_fastqc.zip
1005.33 kB
FASTQ file (CLIP)
lin28a-wt-1new-esc-2ilif-20220524-mm.fastq.gz
110.56 MB
fastqc
Directory
lin28a-wt-1new-esc-2ilif-20220524-mm_fastqc.zip
971.75 kB
iCount RNA-maps
lin28a-wt-1new-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
668.04 kB
Cutadapt (single-end)
report.txt
672 B
lin28a-wt-1new-esc-2ilif-20220524-mm_trimmed.fastq.gz
90.04 MB
fastqc
Directory
FASTQ file (CLIP)
lin28a-wt-flag-2-esc-2ilif-20220524-mm.fastq.gz
5.62 MB
fastqc
Directory
lin28a-wt-flag-2-esc-2ilif-20220524-mm_fastqc.zip
835.56 kB
iCount summary
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
589 B
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
843 B
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
476.89 kB
iCount RNA-maps
lin28a-wt-flag-2-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
375.83 kB
FASTQ file (CLIP)
lin28a-wt-2new-esc-2ilif-20220524-mm.fastq.gz
124.00 MB
fastqc
Directory
lin28a-wt-2new-esc-2ilif-20220524-mm_fastqc.zip
969.16 kB
iCount RNA-maps
lin28a-wt-2new-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
864.95 kB
FASTQ file (CLIP)
lin28a-wt-flag-1-esc-2ilif-20220524-mm.fastq.gz
65.11 MB
fastqc
Directory
lin28a-wt-flag-1-esc-2ilif-20220524-mm_fastqc.zip
1006.84 kB
iCount RNA-maps
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
497.49 kB
FASTQ file (CLIP)
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm.fastq.gz
79.08 MB
fastqc
Directory
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_fastqc.zip
1.04 MB
Cutadapt (single-end)
report.txt
683 B
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
76.37 MB
fastqc
Directory
Paraclu
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
48.86 kB
Paraclu
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
121.67 kB
FASTQ file (CLIP)
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm.fastq.gz
23.68 MB
fastqc
Directory
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_fastqc.zip
924.83 kB
Paraclu
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
9.42 kB
FASTQ file (CLIP)
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm.fastq.gz
111.61 MB
fastqc
Directory
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_fastqc.zip
945.42 kB
iCount RNA-maps
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single.tar.gz
592.14 kB
FASTQ file (CLIP)
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm.fastq.gz
146.26 MB
fastqc
Directory
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_fastqc.zip
1020.77 kB
iCount summary
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
617 B
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1009 B
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.59 MB
Paraclu
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
93.66 kB
iCount RNA-maps
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
529.45 kB
FASTQ file (CLIP)
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm.fastq.gz
89.25 MB
fastqc
Directory
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_fastqc.zip
934.00 kB
iCount summary
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
614 B
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1008 B
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.82 MB
iCount RNA-maps
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
777.60 kB
Paraclu
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
77.87 kB
FASTQ file (CLIP)
lin28a-wt-2-esc-2ilif-20220524-mm.fastq.gz
428.41 MB
fastqc
Directory
lin28a-wt-2-esc-2ilif-20220524-mm_fastqc.zip
624.77 kB
iCount summary
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
630 B
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.26 MB
iCount RNA-maps
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
1.51 MB
FASTQ file (CLIP)
lin28a-wt-1-esc-2ilif-20220524-mm.fastq.gz
369.77 MB
fastqc
Directory
lin28a-wt-1-esc-2ilif-20220524-mm_fastqc.zip
638.26 kB
Cutadapt (single-end)
report.txt
669 B
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed.fastq.gz
435.19 MB
fastqc
Directory
iCount RNA-maps
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
659.32 kB
PEKA
4mer analysis of lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
467.52 kB
iCount RNA-maps
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
1.82 MB
Paraclu
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
169.62 kB
FASTQ file (CLIP)
lin28a-1-esc-2ilif-20220524-mm.fastq.gz
557.64 MB
fastqc
Directory
lin28a-1-esc-2ilif-20220524-mm_fastqc.zip
650.26 kB
Paraclu
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
146.45 kB
iCount RNA-maps
lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
1.71 MB
Cutadapt (single-end)
report.txt
673 B
lin28a-wt-flag-2-esc-2ilif-20220524-mm_trimmed.fastq.gz
5.53 MB
fastqc
Directory
PEKA
4mer analysis of lin28a-1-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
640.57 kB
FASTQ file (CLIP)
lin28a-3-esc-lif-chir-20220524-mm.fastq.gz
537.87 MB
fastqc
Directory
lin28a-3-esc-lif-chir-20220524-mm_fastqc.zip
612.10 kB
Paraclu
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
96.77 kB
iCount RNA-maps
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.67 MB
PEKA
4mer analysis of lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
598.43 kB
iCount summary
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
633 B
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.57 MB
iCount RNA-maps
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.96 MB
FASTQ file (CLIP)
lin28a-1-esc-lif-chir-20220524-mm.fastq.gz
440.21 MB
fastqc
Directory
lin28a-1-esc-lif-chir-20220524-mm_fastqc.zip
634.84 kB
Paraclu
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
99.96 kB
iCount RNA-maps
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.72 MB
FASTQ file (CLIP)
lin28a-wt-3-esc-lif-chir-20220524-mm.fastq.gz
638.27 MB
fastqc
Directory
lin28a-wt-3-esc-lif-chir-20220524-mm_fastqc.zip
623.62 kB
Cutadapt (single-end)
report.txt
673 B
lin28a-wt-2new-esc-2ilif-20220524-mm_trimmed.fastq.gz
117.83 MB
fastqc
Directory
Paraclu
lin28a-wt-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
93.90 kB
iCount RNA-maps
lin28a-wt-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
2.09 MB
FASTQ file (CLIP)
lin28a-wt-1-esc-lif-chir-20220524-mm.fastq.gz
517.99 MB
fastqc
Directory
lin28a-wt-1-esc-lif-chir-20220524-mm_fastqc.zip
611.09 kB
Cutadapt (single-end)
report.txt
673 B
lin28a-wt-flag-1-esc-2ilif-20220524-mm_trimmed.fastq.gz
65.56 MB
fastqc
Directory
iCount RNA-maps
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
2.01 MB
Paraclu
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
137.01 kB
Cutadapt (single-end)
report.txt
674 B
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed.fastq.gz
34.16 MB
fastqc
Directory
iCount RNA-maps
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
519.30 kB
PEKA
4mer analysis of lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
367.88 kB
Cutadapt (single-end)
report.txt
683 B
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
87.52 MB
fastqc
Directory
FASTQ file (CLIP)
lin28a-s200a-1-esc-lif-chir-20220524-mm.fastq.gz
475.16 MB
fastqc
Directory
lin28a-s200a-1-esc-lif-chir-20220524-mm_fastqc.zip
617.77 kB
iCount RNA-maps
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.36 MB
Cutadapt (single-end)
report.txt
679 B
lin28a-s200a-2-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
122.26 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
678 B
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
22.80 MB
fastqc
Directory

LIN28A-S200A-FLAG_2_ESC_LIF-CHIR-FGF_20220524_MM

STAR
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
21.76 MB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.57 MB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam
374.07 MB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
170.77 kB
iCount xlsites
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
1.74 kB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
885.93 kB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
11.35 MB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
894.41 kB
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
3.14 MB
iCount summary
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
613 B
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1005 B
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.43 MB
Paraclu
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
62.15 kB
PEKA
4mer analysis of lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
421.30 kB
FASTQ file (CLIP)
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm.fastq.gz
89.59 MB
fastqc
Directory
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_fastqc.zip
1005.33 kB
iCount RNA-maps
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
497.49 kB
Cutadapt (single-end)
report.txt
683 B
lin28a-s200a-flag-2-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
87.52 MB
fastqc
Directory

LIN28A-WT_1_ESC_LIF-CHIR-FGF_20220524_MM

iCount xlsites
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
2.18 kB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
1.41 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
7.41 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
1.48 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
5.72 MB
Cutadapt (single-end)
report.txt
677 B
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
80.93 MB
fastqc
Directory
STAR
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
21.03 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.30 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam
230.60 MB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
438.35 kB
PEKA
4mer analysis of lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
468.11 kB
FASTQ file (CLIP)
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm.fastq.gz
89.25 MB
fastqc
Directory
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_fastqc.zip
934.00 kB
iCount summary
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
614 B
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1008 B
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.82 MB
iCount RNA-maps
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
777.60 kB
Paraclu
lin28a-wt-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
77.87 kB

LIN28A-S200A_3_ESC_LIF-CHIR_20220524_MM

Cutadapt (single-end)
fastqc
Directory
report.txt
674 B
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed.fastq.gz
34.16 MB
iCount xlsites
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
1.75 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
271.35 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
887.36 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
308.06 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
1.04 MB
PEKA
5mer analysis of lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
781.70 kB
STAR
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
13.16 MB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed.bam.bai
2.51 MB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed.bam
57.18 MB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
105.12 kB
lin28a-s200a-3-esc-lif-chir-20220524-mm_trimmed.bw
5.49 kB
iCount summary
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
599 B
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
989 B
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.02 MB
Paraclu
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
2.38 kB
FASTQ file (CLIP)
lin28a-s200a-3-esc-lif-chir-20220524-mm.fastq.gz
35.01 MB
fastqc
Directory
lin28a-s200a-3-esc-lif-chir-20220524-mm_fastqc.zip
675.32 kB
iCount RNA-maps
lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
519.30 kB
PEKA
4mer analysis of lin28a-s200a-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
367.88 kB

LIN28A-S200A-FLAG_1_ESC_LIF-CHIR-FGF_20220524_MM

STAR
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
21.37 MB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.59 MB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam
324.92 MB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
140.07 kB
iCount xlsites
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
1.99 kB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
741.64 kB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.02 MB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
748.04 kB
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
2.62 MB
iCount summary
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
611 B
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1001 B
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.21 MB
iCount RNA-maps
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
440.64 kB
PEKA
4mer analysis of lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
405.99 kB
FASTQ file (CLIP)
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm.fastq.gz
79.08 MB
fastqc
Directory
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_fastqc.zip
1.04 MB
Cutadapt (single-end)
report.txt
683 B
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
76.37 MB
fastqc
Directory
Paraclu
lin28a-s200a-flag-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
48.86 kB

LIN28A-S200A_1_ESC_LIF-CHIR-FGF_20220524_MM

iCount xlsites
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
1.56 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
372.02 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
5.53 MB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
377.15 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
1.30 MB
STAR
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
7.68 MB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.53 MB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed.bam
100.07 MB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
51.32 kB
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed.bw
9.96 kB
iCount summary
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
597 B
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
982 B
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
785.69 kB
iCount RNA-maps
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
394.17 kB
FASTQ file (CLIP)
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm.fastq.gz
23.68 MB
fastqc
Directory
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_fastqc.zip
924.83 kB
Paraclu
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
9.42 kB
Cutadapt (single-end)
report.txt
678 B
lin28a-s200a-1-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
22.80 MB
fastqc
Directory

LIN28A-WT_3_ESC_LIF-CHIR-FGF-prob_20220524_MM

iCount xlsites
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_skipped.bam
2.12 kB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single.bed.gz
1.30 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
11.35 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_reads_single.bed.gz
1.31 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single.bedgraph
4.93 MB
Cutadapt (single-end)
report.txt
681 B
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed.fastq.gz
108.69 MB
fastqc
Directory
STAR
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
29.07 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed.bam.bai
4.42 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed.bam
416.98 MB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_trimmed_SJ.out.tab
297.03 kB
Paraclu
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single_peaks.bed.gz
71.06 kB
iCount summary
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single_summary_type.tsv
611 B
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1007 B
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.84 MB
PEKA
4mer analysis of lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome.tar.gz
451.98 kB
FASTQ file (CLIP)
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm.fastq.gz
111.61 MB
fastqc
Directory
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_fastqc.zip
945.42 kB
iCount RNA-maps
lin28a-wt-3-esc-lif-chir-fgf-prob-20220524-mm_mapped_to_genome_single.tar.gz
592.14 kB

LIN28A-WT_2_ESC_LIF-CHIR-FGF_20220524_MM

iCount xlsites
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_skipped.bam
2.33 kB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bed.gz
1.07 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
11.27 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_reads_single.bed.gz
1.07 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.bedgraph
3.95 MB
Cutadapt (single-end)
report.txt
676 B
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed.fastq.gz
145.72 MB
fastqc
Directory
STAR
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
36.54 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam.bai
4.53 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed.bam
602.71 MB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed_stats.txt
1.80 kB
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_trimmed_SJ.out.tab
174.08 kB
PEKA
4mer analysis of lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome.tar.gz
430.10 kB
FASTQ file (CLIP)
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm.fastq.gz
146.26 MB
fastqc
Directory
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_fastqc.zip
1020.77 kB
iCount summary
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_type.tsv
617 B
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1009 B
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.59 MB
Paraclu
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single_peaks.bed.gz
93.66 kB
iCount RNA-maps
lin28a-wt-2-esc-lif-chir-fgf-20220524-mm_mapped_to_genome_single.tar.gz
529.45 kB

LIN28A-WT_1_ESC_2iLIF_20220524_MM

iCount xlsites
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
13.01 kB
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
787.00 kB
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
2.73 MB
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
900.20 kB
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
2.98 MB
Cutadapt (single-end)
report.txt
670 B
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed.fastq.gz
360.54 MB
fastqc
Directory
STAR
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
134.77 MB
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed.bam.bai
3.59 MB
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed.bam
529.77 MB
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-1-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
297.33 kB
iCount summary
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
615 B
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1017 B
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
1.54 MB
Paraclu
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
13.79 kB
FASTQ file (CLIP)
lin28a-wt-1-esc-2ilif-20220524-mm.fastq.gz
369.77 MB
fastqc
Directory
lin28a-wt-1-esc-2ilif-20220524-mm_fastqc.zip
638.26 kB
iCount RNA-maps
lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
659.32 kB
PEKA
4mer analysis of lin28a-wt-1-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
467.52 kB

LIN28A-WT_2_ESC_2iLIF_20220524_MM

iCount xlsites
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
12.17 kB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
4.79 MB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
10.04 MB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.40 MB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
21.46 MB
STAR
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
157.78 MB
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed.bam.bai
3.50 MB
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed.bam
630.60 MB
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
1.37 MB
Paraclu
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
62.66 kB
PEKA
4mer analysis of lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
618.93 kB
FASTQ file (CLIP)
lin28a-wt-2-esc-2ilif-20220524-mm.fastq.gz
428.41 MB
fastqc
Directory
lin28a-wt-2-esc-2ilif-20220524-mm_fastqc.zip
624.77 kB
iCount summary
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
630 B
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.26 MB
iCount RNA-maps
lin28a-wt-2-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
1.51 MB
Cutadapt (single-end)
report.txt
669 B
lin28a-wt-2-esc-2ilif-20220524-mm_trimmed.fastq.gz
435.19 MB
fastqc
Directory

LIN28A_2_ESC_2iLIF_20220524_MM

iCount xlsites
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_skipped.bam
19.55 kB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bed.gz
5.05 MB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
11.85 MB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.78 MB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single.bedgraph
23.10 MB
Cutadapt (single-end)
report.txt
666 B
lin28a-2-esc-2ilif-20220524-mm_trimmed.fastq.gz
654.16 MB
fastqc
Directory
STAR
lin28a-2-esc-2ilif-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
191.35 MB
lin28a-2-esc-2ilif-20220524-mm_trimmed.bam.bai
3.50 MB
lin28a-2-esc-2ilif-20220524-mm_trimmed.bam
931.52 MB
lin28a-2-esc-2ilif-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-2-esc-2ilif-20220524-mm_trimmed_SJ.out.tab
1.98 MB
iCount summary
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_type.tsv
628 B
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.38 MB
PEKA
4mer analysis of lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome.tar.gz
663.01 kB
FASTQ file (CLIP)
lin28a-2-esc-2ilif-20220524-mm.fastq.gz
649.89 MB
fastqc
Directory
lin28a-2-esc-2ilif-20220524-mm_fastqc.zip
664.10 kB
iCount RNA-maps
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single.tar.gz
1.82 MB
Paraclu
lin28a-2-esc-2ilif-20220524-mm_mapped_to_genome_single_peaks.bed.gz
169.62 kB

LIN28A_3_ESC_LIF-CHIR_20220524_MM

iCount xlsites
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
13.75 kB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
4.39 MB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.98 MB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
4.88 MB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
19.83 MB
Cutadapt (single-end)
report.txt
669 B
lin28a-3-esc-lif-chir-20220524-mm_trimmed.fastq.gz
548.23 MB
fastqc
Directory
STAR
lin28a-3-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
197.69 MB
lin28a-3-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.47 MB
lin28a-3-esc-lif-chir-20220524-mm_trimmed.bam
853.11 MB
lin28a-3-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-3-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.74 MB
iCount summary
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
631 B
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.30 MB
FASTQ file (CLIP)
lin28a-3-esc-lif-chir-20220524-mm.fastq.gz
537.87 MB
fastqc
Directory
lin28a-3-esc-lif-chir-20220524-mm_fastqc.zip
612.10 kB
Paraclu
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
96.77 kB
iCount RNA-maps
lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.67 MB
PEKA
4mer analysis of lin28a-3-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
598.43 kB

LIN28A_1_ESC_LIF-CHIR_20220524_MM

iCount xlsites
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
13.39 kB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
5.07 MB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
12.74 MB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.61 MB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
22.90 MB
Cutadapt (single-end)
report.txt
669 B
lin28a-1-esc-lif-chir-20220524-mm_trimmed.fastq.gz
444.30 MB
fastqc
Directory
PEKA
5mer analysis of lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.38 MB
STAR
lin28a-1-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
177.14 MB
lin28a-1-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.37 MB
lin28a-1-esc-lif-chir-20220524-mm_trimmed.bam
699.93 MB
lin28a-1-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-1-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.76 MB
iCount summary
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
632 B
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.46 MB
PEKA
4mer analysis of lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
623.83 kB
FASTQ file (CLIP)
lin28a-1-esc-lif-chir-20220524-mm.fastq.gz
440.21 MB
fastqc
Directory
lin28a-1-esc-lif-chir-20220524-mm_fastqc.zip
634.84 kB
Paraclu
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
99.96 kB
iCount RNA-maps
lin28a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.72 MB

LIN28A_2_ESC_LIF-CHIR_20220524_MM

iCount xlsites
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
15.19 kB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
6.85 MB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
16.03 MB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
7.59 MB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
31.35 MB
Cutadapt (single-end)
report.txt
669 B
lin28a-2-esc-lif-chir-20220524-mm_trimmed.fastq.gz
508.61 MB
fastqc
Directory
STAR
lin28a-2-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
175.18 MB
lin28a-2-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.32 MB
lin28a-2-esc-lif-chir-20220524-mm_trimmed.bam
798.54 MB
lin28a-2-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-2-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
2.08 MB
Paraclu
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
136.50 kB
PEKA
4mer analysis of lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
643.17 kB
FASTQ file (CLIP)
lin28a-2-esc-lif-chir-20220524-mm.fastq.gz
505.10 MB
fastqc
Directory
lin28a-2-esc-lif-chir-20220524-mm_fastqc.zip
633.50 kB
iCount summary
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
633 B
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.57 MB
iCount RNA-maps
lin28a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.96 MB

LIN28A-WT_1_ESC_LIF-CHIR_20220524_MM

Cutadapt (single-end)
report.txt
672 B
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed.fastq.gz
530.50 MB
fastqc
Directory
PEKA
5mer analysis of lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.50 MB
STAR
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
150.30 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.48 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed.bam
780.05 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-wt-1-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
2.08 MB
iCount xlsites
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
9.36 kB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
7.88 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
14.60 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
8.85 MB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
36.16 MB
iCount summary
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
634 B
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.44 MB
PEKA
4mer analysis of lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
658.02 kB
FASTQ file (CLIP)
lin28a-wt-1-esc-lif-chir-20220524-mm.fastq.gz
517.99 MB
fastqc
Directory
lin28a-wt-1-esc-lif-chir-20220524-mm_fastqc.zip
611.09 kB
iCount RNA-maps
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
2.01 MB
Paraclu
lin28a-wt-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
137.01 kB

LIN28A-S200A_2_ESC_LIF-CHIR_20220524_MM

PEKA
5mer analysis of lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.37 MB
STAR
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
177.21 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.67 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed.bam
811.19 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.35 MB
iCount xlsites
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
10.81 kB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
4.73 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
9.70 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
5.40 MB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
21.19 MB
iCount summary
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
628 B
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.20 MB
Paraclu
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
51.35 kB
iCount RNA-maps
lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.49 MB
PEKA
4mer analysis of lin28a-s200a-2-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
603.29 kB
FASTQ file (CLIP)
lin28a-s200a-2-esc-lif-chir-20220524-mm.fastq.gz
514.08 MB
fastqc
Directory
lin28a-s200a-2-esc-lif-chir-20220524-mm_fastqc.zip
627.20 kB
Cutadapt (single-end)
report.txt
675 B
lin28a-s200a-2-esc-lif-chir-20220524-mm_trimmed.fastq.gz
520.24 MB
fastqc
Directory

LIN28A-S200A_1_ESC_LIF-CHIR_20220524_MM

Cutadapt (single-end)
report.txt
675 B
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed.fastq.gz
481.08 MB
fastqc
Directory
PEKA
5mer analysis of lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
1.37 MB
STAR
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
157.83 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed.bam.bai
3.66 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed.bam
711.18 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed_stats.txt
1.82 kB
lin28a-s200a-1-esc-lif-chir-20220524-mm_trimmed_SJ.out.tab
1.19 MB
iCount xlsites
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_skipped.bam
17.18 kB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bed.gz
3.95 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
8.51 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_reads_single.bed.gz
4.54 MB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.bedgraph
17.46 MB
Paraclu
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_peaks.bed.gz
44.64 kB
iCount summary
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_type.tsv
627 B
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1.01 kB
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.15 MB
PEKA
4mer analysis of lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome.tar.gz
616.46 kB
FASTQ file (CLIP)
lin28a-s200a-1-esc-lif-chir-20220524-mm.fastq.gz
475.16 MB
fastqc
Directory
lin28a-s200a-1-esc-lif-chir-20220524-mm_fastqc.zip
617.77 kB
iCount RNA-maps
lin28a-s200a-1-esc-lif-chir-20220524-mm_mapped_to_genome_single.tar.gz
1.36 MB

LIN28A-WT_ESC_2iLIF-prob_20220524_MM

Cutadapt (single-end)
report.txt
673 B
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed.fastq.gz
96.20 MB
fastqc
Directory
STAR
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed_unmapped.out.mate1.fastq.gz
26.94 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed.bam.bai
3.61 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed.bam
245.21 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed_stats.txt
1.81 kB
lin28a-wt-esc-2ilif-prob-20220524-mm_trimmed_SJ.out.tab
230.34 kB
iCount RNA-maps
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single.tar.gz
604.61 kB
iCount xlsites
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_skipped.bam
2.76 kB
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single.bed.gz
3.18 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_singleAndMulti.bed.gz
12.61 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_reads_single.bed.gz
3.24 MB
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single.bedgraph
12.73 MB
iCount summary
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single_summary_type.tsv
617 B
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single_summary_subtype.tsv
1018 B
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single_summary_gene.tsv
2.19 MB
Paraclu
lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome_single_peaks.bed.gz
260.17 kB
PEKA
4mer analysis of lin28a-wt-esc-2ilif-prob-20220524-mm_mapped_to_genome.tar.gz
494.56 kB
FASTQ file (CLIP)
lin28a-wt-esc-2ilif-prob-20220524-mm.fastq.gz
100.82 MB
fastqc
Directory
lin28a-wt-esc-2ilif-prob-20220524-mm_fastqc.zip
702.49 kB