Tremble/Silva SOX2 scRNAseq

No Sample

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_report.html

1.21 MB

multiqc_data

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

fastqc

Directory

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.03 MB

FASTQ file (single-end)

stderr.txt

2.85 kB

fastqc

Directory

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

202.22 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.11 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.59 kB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

273.40 kB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

240.93 kB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

571.47 kB

MultiQC

multiqc_report.html

1.21 MB

multiqc_data

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.60 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

277.61 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

251.59 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

584.79 kB

MultiQC

multiqc_report.html

1.22 MB

multiqc_data

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.89 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.72 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

806 B

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

205.94 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

290.56 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

253.65 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

605.80 kB

STAR

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.34 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

128 B

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

809 B

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.47 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.28 kB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

946.71 kB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.73 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.74 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

278.49 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

252.45 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

586.67 kB

STAR

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.96 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

BBDuk (single-end)

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

183.67 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

582 B

fastqc

Directory

BBDuk (single-end)

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

299.46 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

606 B

fastqc

Directory

STAR

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

66.48 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.61 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.67 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

7.40 kB

BBDuk (single-end)

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

220.30 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

610 B

fastqc

Directory

BBDuk (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.fastq.gz

207.01 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_statistics.txt.gz

694 B

fastqc

Directory

BBDuk (single-end)

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

188.21 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

628 B

fastqc

Directory

BBDuk (single-end)

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

217.28 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_statistics.txt.gz

615 B

fastqc

Directory

STAR

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.47 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.66 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.30 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.64 kB

BBDuk (single-end)

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

245.92 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

541 B

fastqc

Directory

BBDuk (single-end)

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed.fastq.gz

225.45 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_statistics.txt.gz

649 B

fastqc

Directory

STAR

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.90 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

665 B

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

200.96 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

269.90 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

240.81 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

566.39 kB

BBDuk (single-end)

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

274.36 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

601 B

fastqc

Directory

BBDuk (single-end)

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

222.92 MB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

585 B

fastqc

Directory

BBDuk (single-end)

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

337.45 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

658 B

fastqc

Directory

STAR

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.35 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.38 kB

BBDuk (single-end)

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

294.51 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

657 B

fastqc

Directory

BBDuk (single-end)

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

262.37 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

609 B

fastqc

Directory

BBDuk (single-end)

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

198.51 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

562 B

fastqc

Directory

BBDuk (single-end)

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

316.22 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

629 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.33 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

270.37 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

244.34 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

568.40 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

BBDuk (single-end)

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

150.65 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

550 B

fastqc

Directory

STAR

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.54 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.42 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.19 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.18 kB

BBDuk (single-end)

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

246.73 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

672 B

fastqc

Directory

BBDuk (single-end)

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

263.79 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

584 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.63 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

273.13 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

242.26 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

571.38 kB

BBDuk (single-end)

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

227.16 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

568 B

fastqc

Directory

BBDuk (single-end)

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

170.56 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

603 B

fastqc

Directory

BBDuk (single-end)

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

159.70 MB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

543 B

fastqc

Directory

STAR

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.93 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.14 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

932.48 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.50 kB

STAR

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.29 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

BBDuk (single-end)

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

133.53 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

566 B

fastqc

Directory

BBDuk (single-end)

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

221.02 MB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

549 B

fastqc

Directory

STAR

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.50 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.70 kB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.39 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.17 kB

STAR

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.25 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

BBDuk (single-end)

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

263.23 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

703 B

fastqc

Directory

BBDuk (single-end)

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

290.76 MB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

602 B

fastqc

Directory

STAR

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.20 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

BBDuk (single-end)

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

174.34 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

530 B

fastqc

Directory

BBDuk (single-end)

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

184.14 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_statistics.txt.gz

517 B

fastqc

Directory

BBDuk (single-end)

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

423.32 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

651 B

fastqc

Directory

BBDuk (single-end)

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

303.32 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

612 B

fastqc

Directory

BBDuk (single-end)

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

236.03 MB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

540 B

fastqc

Directory

STAR

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.03 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.55 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.29 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.40 kB

BBDuk (single-end)

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

313.99 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

612 B

fastqc

Directory

STAR

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

68.44 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.31 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

272.60 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

240.05 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

568.93 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

BBDuk (single-end)

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

188.17 MB

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

613 B

fastqc

Directory

BBDuk (single-end)

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

221.34 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_statistics.txt.gz

586 B

fastqc

Directory

MultiQC

multiqc_report.html

1.21 MB

multiqc_data

Directory

BBDuk (single-end)

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

120.40 MB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

513 B

fastqc

Directory

STAR

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.89 MB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.20 kB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

944.59 kB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.12 kB

BBDuk (single-end)

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

239.96 MB

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

606 B

fastqc

Directory

BBDuk (single-end)

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

171.94 MB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

598 B

fastqc

Directory

BBDuk (single-end)

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

194.81 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_statistics.txt.gz

677 B

fastqc

Directory

BBDuk (single-end)

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

258.09 MB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

606 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.92 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

271.76 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.80 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

571.60 kB

BBDuk (single-end)

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

291.24 MB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

608 B

fastqc

Directory

BBDuk (single-end)

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

259.42 MB

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_statistics.txt.gz

577 B

fastqc

Directory

STAR

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.00 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.04 MB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

BBDuk (single-end)

ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

276.48 MB

ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

569 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.91 kB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

278.86 kB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.04 kB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

582.57 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

BBDuk (single-end)

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

245.38 MB

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_statistics.txt.gz

581 B

fastqc

Directory

Samtools idxstats

idxstat_report.txt

1.38 kB

BBDuk (single-end)

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

145.25 MB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

549 B

fastqc

Directory

BBDuk (single-end)

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

481.99 MB

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

647 B

fastqc

Directory

BBDuk (single-end)

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

249.68 MB

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

604 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.76 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

279.46 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

251.59 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

587.42 kB

BBDuk (single-end)

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

209.71 MB

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

521 B

fastqc

Directory

BBDuk (single-end)

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

188.18 MB

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

633 B

fastqc

Directory

BBDuk (single-end)

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

291.66 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

654 B

fastqc

Directory

BBDuk (single-end)

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

224.78 MB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

577 B

fastqc

Directory

BBDuk (single-end)

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

173.46 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

603 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.02 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

277.86 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

247.78 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

582.33 kB

BBDuk (single-end)

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

204.70 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

649 B

fastqc

Directory

STAR

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.10 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.15 kB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

896.23 kB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.17 kB

BBDuk (single-end)

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

186.96 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

593 B

fastqc

Directory

BBDuk (single-end)

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

252.11 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

651 B

fastqc

Directory

BBDuk (single-end)

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

158.29 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

601 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

204.59 kB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

288.67 kB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.39 kB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

595.64 kB

BBDuk (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

206.87 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

714 B

fastqc

Directory

BBDuk (single-end)

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

213.78 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

576 B

fastqc

Directory

BBDuk (single-end)

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

219.10 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

598 B

fastqc

Directory

STAR

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.31 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.50 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.46 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.59 kB

STAR

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.96 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.64 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.29 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.66 kB

BBDuk (single-end)

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

166.11 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

575 B

fastqc

Directory

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.92 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

278.99 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.33 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

582.27 kB

BBDuk (single-end)

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

314.12 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

586 B

fastqc

Directory

BBDuk (single-end)

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

335.39 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

602 B

fastqc

Directory

BBDuk (single-end)

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

318.14 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

601 B

fastqc

Directory

BBDuk (single-end)

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

272.81 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

580 B

fastqc

Directory

STAR

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.36 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.45 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

BBDuk (single-end)

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

147.12 MB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

616 B

fastqc

Directory

BBDuk (single-end)

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

185.89 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

584 B

fastqc

Directory

STAR

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.53 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.84 MB

fastqc

Directory

STAR

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

5.62 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

106.82 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.83 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.25 MB

STAR

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.24 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.77 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.34 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.56 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.01 MB

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.55 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

108.22 MB

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ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.81 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.55 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.83 MB

Subsample FASTQ (single-end)

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.33 MB

fastqc

Directory

STAR

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

18.07 MB

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

144.00 MB

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.66 MB

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.05 MB

STAR

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.37 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.56 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.18 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.02 kB

STAR

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.42 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

112.66 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.98 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.33 MB

Samtools idxstats

idxstat_report.txt

1.38 kB

Subsample FASTQ (single-end)

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.37 MB

fastqc

Directory

STAR

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

9.93 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.58 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

159.63 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.77 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.24 MB

Subsample FASTQ (single-end)

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.08 MB

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.48 kB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

276.58 kB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

245.31 kB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

578.03 kB

STAR

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

14.37 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

151.70 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.43 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.88 MB

STAR

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.39 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

119.55 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.55 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.99 MB

Subsample FASTQ (single-end)

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

77.98 MB

fastqc

Directory

STAR

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.17 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

667 B

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

Subsample FASTQ (single-end)

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.35 MB

fastqc

Directory

STAR

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.01 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

137.19 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.75 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.16 MB

STAR

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

9.37 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

115.85 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.75 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.17 MB

STAR

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.40 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.25 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.00 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.21 kB

Subsample FASTQ (single-end)

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.70 MB

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.37 MB

fastqc

Directory

STAR

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

14.29 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

178.19 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.78 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.31 MB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.64 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

276.82 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

244.90 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

578.66 kB

Subsample FASTQ (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.fastq.gz

73.74 MB

fastqc

Directory

STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_unmapped.out.mate1.fastq.gz

15.28 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam.bai

1.63 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam

153.02 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_stats.txt

1.82 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_SJ.out.tab

1.70 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bw

2.25 MB

STAR

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.08 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

118.58 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.68 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.10 MB

Subsample FASTQ (single-end)

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.09 MB

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.96 MB

fastqc

Directory

STAR

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.92 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.84 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

1.76 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

2.18 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

5.35 kB

STAR

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

11.15 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

138.35 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.67 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bw

2.11 MB

Subsample FASTQ (single-end)

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.00 MB

fastqc

Directory

STAR

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.83 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

816 B

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.15 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

143.45 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.53 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.96 MB

Subsample FASTQ (single-end)

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.fastq.gz

74.82 MB

fastqc

Directory

STAR

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_unmapped.out.mate1.fastq.gz

12.49 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed.bam.bai

1.59 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed.bam

170.49 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_stats.txt

1.82 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_SJ.out.tab

1.75 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed.bw

2.24 MB

Subsample FASTQ (single-end)

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.22 MB

fastqc

Directory

STAR

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.37 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

160.70 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.65 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.03 MB

Subsample FASTQ (single-end)

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.65 MB

fastqc

Directory

STAR

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

12.13 MB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

135.04 MB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.70 MB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.10 MB

STAR

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.42 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.42 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.06 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.09 kB

STAR

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.01 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.69 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

200.84 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.78 MB

Subsample FASTQ (single-end)

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.08 MB

fastqc

Directory

STAR

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

14.08 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.62 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

177.93 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.77 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.21 MB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.84 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

270.84 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

245.80 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

570.40 kB

Subsample FASTQ (single-end)

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.55 MB

fastqc

Directory

STAR

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.62 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

127.49 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.93 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.33 MB

Subsample FASTQ (single-end)

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.29 MB

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.33 MB

fastqc

Directory

STAR

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

12.38 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

159.86 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.69 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.14 MB

STAR

64.94 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

128 B

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

876 B

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.66 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

99.43 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.71 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.07 MB

STAR

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.62 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.65 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

186.98 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.82 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.35 MB

featureCounts

results

Directory

featureCounts_rc.txt.summary

481 B

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_rc.tab.gz

204.12 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_tpm.tab.gz

285.65 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_cpm.tab.gz

250.15 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_expressions.txt.gz

593.98 kB

Subsample FASTQ (single-end)

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.54 MB

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.49 MB

fastqc

Directory

STAR

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

14.34 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

152.54 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.40 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.80 MB

STAR

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.25 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.62 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

154.40 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

2.16 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.68 MB

Subsample FASTQ (single-end)

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.92 MB

fastqc

Directory

Samtools idxstats

idxstat_report.txt

1.38 kB

Subsample FASTQ (single-end)

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.fastq.gz

77.28 MB

fastqc

Directory

STAR

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.85 MB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.36 kB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.12 MB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

3.51 kB

Subsample FASTQ (single-end)

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.51 MB

fastqc

Directory

STAR

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.98 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

11.89 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.58 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

139.74 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.81 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.26 MB

STAR

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_unmapped.out.mate1.fastq.gz

22.37 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam.bai

1.81 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam

288.69 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_stats.txt

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ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_SJ.out.tab

1.86 MB

STAR

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

5.35 MB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

75.34 MB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.64 MB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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8.90 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

111.15 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.73 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.10 MB

STAR

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

6.30 MB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.53 MB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

104.35 MB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.66 MB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.91 MB

STAR

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

6.73 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

91.33 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.63 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.00 MB

Subsample FASTQ (single-end)

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73.28 MB

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.70 MB

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.17 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

271.47 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.99 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

572.94 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.72 MB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

139.92 MB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.45 MB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.86 MB

Subsample FASTQ (single-end)

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.71 MB

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.64 kB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

276.60 kB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.52 kB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

579.00 kB

Subsample FASTQ (single-end)

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71.41 MB

fastqc

Directory

Subsample FASTQ (single-end)

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75.49 MB

fastqc

Directory

STAR

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.56 MB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Subsample FASTQ (single-end)

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73.99 MB

fastqc

Directory

STAR

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.12 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

162.61 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.65 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.15 MB

STAR

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.91 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.67 kB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.47 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.97 kB

STAR

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.49 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.44 kB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.07 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.32 kB

FASTQ file (single-end)

fastqc

Directory

stderr.txt

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ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1.fastq.gz

255.86 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_fastqc.zip

417.01 kB

Subsample FASTQ (single-end)

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74.56 MB

fastqc

Directory

STAR

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

32.13 MB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.62 MB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

289.81 MB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.42 MB

STAR

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

13.44 MB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.60 MB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

170.00 MB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.57 MB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.09 MB

Subsample FASTQ (single-end)

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.05 MB

fastqc

Directory

STAR

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

11.31 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

107.22 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.52 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.92 MB

Samtools idxstats

idxstat_report.txt

1.38 kB

Subsample FASTQ (single-end)

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73.45 MB

fastqc

Directory

STAR

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.99 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.23 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

117.02 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.77 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bw

2.15 MB

Samtools idxstats

idxstat_report.txt

1.39 kB

Subsample FASTQ (single-end)

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.67 MB

fastqc

Directory

STAR

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

4.67 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

102.12 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.81 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

2.10 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bw

2.46 MB

Subsample FASTQ (single-end)

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.79 MB

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.21 MB

fastqc

Directory

STAR

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

23.13 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.63 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

240.89 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.40 MB

STAR

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.90 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

177.82 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.80 MB

STAR

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ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

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Subsample FASTQ (single-end)

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Directory

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FASTQ file (single-end)

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Directory

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ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

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ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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fastqc

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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Subsample FASTQ (single-end)

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fastqc

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

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ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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STAR

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.bam

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featureCounts

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Directory

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Samtools idxstats

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Subsample FASTQ (single-end)

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fastqc

Directory

Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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Subsample FASTQ (single-end)

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fastqc

Directory

featureCounts

results

Directory

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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STAR

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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STAR

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.58 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.10 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.16 kB

Subsample FASTQ (single-end)

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.42 MB

fastqc

Directory

STAR

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.58 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.99 MB

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.60 MB

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

149.42 MB

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.57 MB

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bw

2.05 MB

STAR

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

6.09 MB

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.58 MB

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

98.23 MB

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.81 MB

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.20 MB

Subsample FASTQ (single-end)

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.45 MB

fastqc

Directory

STAR

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

6.40 MB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.52 MB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

95.41 MB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.66 MB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.96 MB

Subsample FASTQ (single-end)

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.97 MB

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

75.31 MB

fastqc

Directory

STAR

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.67 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.61 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.50 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.57 kB

STAR

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

11.73 MB

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

151.56 MB

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.70 MB

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.16 MB

Subsample FASTQ (single-end)

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.88 MB

fastqc

Directory

STAR

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.09 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

27.13 MB

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

264.81 MB

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.44 MB

Subsample FASTQ (single-end)

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.87 MB

fastqc

Directory

STAR

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.19 MB

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.52 MB

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

129.01 MB

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.76 MB

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.12 MB

STAR

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.98 MB

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

118.09 MB

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.83 MB

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.21 MB

Subsample FASTQ (single-end)

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.10 MB

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.33 MB

fastqc

Directory

STAR

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.00 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.90 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

274.94 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

249.22 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

579.95 kB

STAR

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.26 MB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

139.11 MB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.61 MB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.03 MB

STAR

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

12.17 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.62 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

179.32 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.95 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.47 MB

Subsample FASTQ (single-end)

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.91 MB

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.12 MB

fastqc

Directory

STAR

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.04 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.50 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.31 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.43 kB

FASTQ file (single-end)

stderr.txt

2.85 kB

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1.fastq.gz

284.39 MB

fastqc

Directory

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_fastqc.zip

421.50 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.62 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

110.12 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.72 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.06 MB

Subsample FASTQ (single-end)

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.25 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

182.60 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.94 kB

FASTQ file (single-end)

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

203.13 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

417.36 kB

FASTQ file (single-end)

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

195.27 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.08 kB

STAR

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.72 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

124.75 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.70 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.09 MB

FASTQ file (single-end)

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2.fastq.gz

371.61 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_fastqc.zip

437.19 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.26 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

277.41 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

242.12 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

576.99 kB

FASTQ file (single-end)

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

289.76 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

421.79 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

FASTQ file (single-end)

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

177.89 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

421.35 kB

Subsample FASTQ (single-end)

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.30 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

139.46 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.40 kB

FASTQ file (single-end)

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

185.09 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

418.61 kB

FASTQ file (single-end)

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2.fastq.gz

325.50 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_fastqc.zip

431.82 kB

FASTQ file (single-end)

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

286.55 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

423.35 kB

FASTQ file (single-end)

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

197.74 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.28 kB

STAR

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.85 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

118.34 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.80 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.25 MB

STAR

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

6.23 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

103.93 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.90 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.32 MB

FASTQ file (single-end)

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

155.30 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

421.11 kB

Subsample FASTQ (single-end)

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.60 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

203.65 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.45 kB

FASTQ file (single-end)

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

303.82 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

414.53 kB

FASTQ file (single-end)

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

298.04 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.19 kB

FASTQ file (single-end)

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

345.41 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.80 kB

FASTQ file (single-end)

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

197.64 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

429.15 kB

FASTQ file (single-end)

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

213.09 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.41 kB

Subsample FASTQ (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.85 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2.fastq.gz

276.91 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_fastqc.zip

432.05 kB

FASTQ file (single-end)

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

256.43 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.65 kB

FASTQ file (single-end)

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

220.09 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

416.51 kB

STAR

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.83 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.62 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.19 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.52 kB

FASTQ file (single-end)

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

285.15 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.45 kB

FASTQ file (single-end)

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

317.23 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.17 kB

FASTQ file (single-end)

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2.fastq.gz

302.56 MB

fastqc

Directory

stderr.txt

3.55 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_fastqc.zip

435.61 kB

FASTQ file (single-end)

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

343.73 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

414.54 kB

FASTQ file (single-end)

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

391.18 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

411.53 kB

Subsample FASTQ (single-end)

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.05 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

258.43 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

414.42 kB

STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

13.68 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

127.31 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.73 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.18 MB

FASTQ file (single-end)

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

231.90 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.42 kB

STAR

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

65.29 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

1.56 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

1.43 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

7.53 kB

FASTQ file (single-end)

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

366.31 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.41 kB

FASTQ file (single-end)

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2.fastq.gz

524.00 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_fastqc.zip

427.57 kB

FASTQ file (single-end)

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

305.07 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

416.38 kB

FASTQ file (single-end)

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

176.62 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.18 kB

STAR

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.78 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

146.80 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.47 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.91 MB

FASTQ file (single-end)

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

612.00 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

416.91 kB

FASTQ file (single-end)

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

288.09 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.86 kB

STAR

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.76 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.89 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.37 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.73 kB

FASTQ file (single-end)

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

307.93 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.38 kB

FASTQ file (single-end)

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

264.87 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

417.35 kB

FASTQ file (single-end)

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

200.98 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

422.79 kB

FASTQ file (single-end)

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

159.15 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

423.00 kB

Subsample FASTQ (single-end)

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.89 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

313.77 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

423.26 kB

FASTQ file (single-end)

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

261.38 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.48 kB

FASTQ file (single-end)

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

128.76 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.18 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

200.46 kB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

269.04 kB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

240.97 kB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

562.00 kB

FASTQ file (single-end)

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

335.14 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

418.22 kB

FASTQ file (single-end)

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1.fastq.gz

213.46 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_fastqc.zip

415.97 kB

FASTQ file (single-end)

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

492.88 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

417.99 kB

FASTQ file (single-end)

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

202.59 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

415.97 kB

FASTQ file (single-end)

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1.fastq.gz

177.26 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_fastqc.zip

418.61 kB

Subsample FASTQ (single-end)

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.84 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

352.27 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

416.38 kB

FASTQ file (single-end)

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

272.04 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

422.29 kB

STAR

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

67.06 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

56 B

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

666 B

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

0 B

FASTQ file (single-end)

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

364.02 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.05 kB

FASTQ file (single-end)

ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

210.41 MB

fastqc

Directory

stderr.txt

2.99 kB

ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.63 kB

STAR

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.75 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

134.48 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.77 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.18 MB

FASTQ file (single-end)

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

221.28 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.19 kB

FASTQ file (single-end)

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1.fastq.gz

258.19 MB

fastqc

Directory

stderr.txt

2.99 kB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_fastqc.zip

418.05 kB

STAR

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

9.56 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.53 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

133.40 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.64 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.03 MB

FASTQ file (single-end)

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

139.77 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

421.27 kB

FASTQ file (single-end)

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

199.92 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

418.20 kB

FASTQ file (single-end)

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

278.03 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.03 kB

STAR

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.42 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

128 B

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

829 B

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Subsample FASTQ (single-end)

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

71.45 MB

fastqc

Directory

Samtools idxstats

idxstat_report.txt

1.39 kB

FASTQ file (single-end)

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

338.71 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

415.62 kB

FASTQ file (single-end)

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1.fastq.gz

228.41 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_fastqc.zip

422.08 kB

FASTQ file (single-end)

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

298.95 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.22 kB

FASTQ file (single-end)

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1.fastq.gz

301.00 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_fastqc.zip

416.79 kB

FASTQ file (single-end)

ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

321.02 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.22 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.63 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

279.63 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

247.74 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

584.64 kB

FASTQ file (single-end)

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

555.36 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.47 kB

STAR

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.09 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

83.96 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.48 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.84 MB

FASTQ file (single-end)

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

172.40 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.50 kB

FASTQ file (single-end)

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

289.60 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.99 kB

FASTQ file (single-end)

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

339.38 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

417.20 kB

FASTQ file (single-end)

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

169.28 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.30 kB

STAR

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.74 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.93 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.88 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.39 kB

FASTQ file (single-end)

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

261.31 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

416.70 kB

FASTQ file (single-end)

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

242.94 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.44 kB

FASTQ file (single-end)

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

218.53 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

414.73 kB

FASTQ file (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

243.95 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.68 kB

Subsample FASTQ (single-end)

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.13 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

236.43 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.76 kB

STAR

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.31 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

108.04 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.52 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.92 MB

FASTQ file (single-end)

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

215.66 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.62 kB

FASTQ file (single-end)

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

252.58 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

416.26 kB

FASTQ file (single-end)

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

183.57 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.54 kB

FASTQ file (single-end)

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

294.02 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.25 kB

STAR

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.81 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.53 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

102.40 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.59 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.98 MB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_rc.tab.gz

206.18 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_tpm.tab.gz

292.94 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_cpm.tab.gz

258.96 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_expressions.txt.gz

609.32 kB

FASTQ file (single-end)

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

151.15 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.43 kB

FASTQ file (single-end)

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

196.11 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.01 kB

Subsample FASTQ (single-end)

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.06 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

187.86 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

421.51 kB

FASTQ file (single-end)

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

363.09 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

415.66 kB

FASTQ file (single-end)

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

369.38 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.36 kB

FASTQ file (single-end)

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

171.38 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.79 kB

FASTQ file (single-end)

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

314.94 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

421.33 kB

Subsample FASTQ (single-end)

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.57 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

389.02 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.73 kB

FASTQ file (single-end)

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

216.17 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.20 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.94 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

273.70 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

243.04 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

572.84 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

12.79 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.63 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

188.64 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.72 MB

Subsample FASTQ (single-end)

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.53 MB

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.70 kB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

272.59 kB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

242.13 kB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

570.88 kB

BBDuk (single-end)

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

155.18 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

551 B

fastqc

Directory

STAR

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.64 MB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.45 kB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.27 MB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

3.50 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.49 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

667 B

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.28 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.95 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

2.02 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.00 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

442 B

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.66 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

275.09 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

239.35 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

571.86 kB

STAR

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

18.24 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

181.62 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.37 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.92 MB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.36 MB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.19 kB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1004.19 kB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.49 kB

Subsample FASTQ (single-end)

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.24 MB

fastqc

Directory

STAR

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.53 MB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.21 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

667 B

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

4.61 MB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

98.18 MB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.81 kB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

2.11 MB

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.38 MB

Subsample FASTQ (single-end)

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.68 MB

fastqc

Directory

STAR

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

9.97 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.58 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

165.18 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.83 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.28 MB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.03 kB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

266.41 kB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

243.84 kB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

563.38 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.66 MB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

442 B

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

275.91 kB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.54 MB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.89 kB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.88 MB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

1.37 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

Subsample FASTQ (single-end)

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fastqc

Directory

STAR

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.88 MB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

3.47 kB

STAR

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.42 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.58 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.14 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.26 MB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.95 MB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.02 MB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.33 kB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

994.42 kB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.91 kB

STAR

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.81 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

889 B

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.38 kB

Samtools idxstats

idxstat_report.txt

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featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

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ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

514 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.42 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.28 MB

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

116.87 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

196.86 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.75 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.26 MB

STAR

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.36 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.68 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.56 kB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.22 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.20 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.76 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.54 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.06 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

1.40 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.82 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.48 kB

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featureCounts

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featureCounts

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featureCounts

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STAR

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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featureCounts

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STAR

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ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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STAR

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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Samtools idxstats

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STAR

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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BBDuk (single-end)

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fastqc

Directory

STAR

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

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STAR

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ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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Samtools idxstats

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featureCounts

results

Directory

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STAR

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STAR

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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featureCounts

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Directory

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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STAR

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.53 MB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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STAR

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ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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STAR

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

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Samtools idxstats

idxstat_report.txt

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MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.96 MB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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BBDuk (single-end)

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

679 B

fastqc

Directory

STAR

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

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445 B

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

275.79 kB

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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featureCounts

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STAR

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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featureCounts

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Directory

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Samtools idxstats

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Samtools idxstats

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STAR

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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STAR

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ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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STAR

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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featureCounts

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Directory

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444 B

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Samtools idxstats

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STAR

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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BBDuk (single-end)

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ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

STAR

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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Samtools idxstats

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featureCounts

results

Directory

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Samtools idxstats

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featureCounts

results

Directory

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ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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Samtools idxstats

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MultiQC

multiqc_data

Directory

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STAR

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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BBDuk (single-end)

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ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

578 B

fastqc

Directory

STAR

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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STAR

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

1.39 kB

featureCounts

results

Directory

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444 B

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

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445 B

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ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.59 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.69 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.57 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.05 kB

STAR

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

BBDuk (single-end)

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174.63 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

568 B

fastqc

Directory

BBDuk (single-end)

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280.57 MB

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_statistics.txt.gz

647 B

fastqc

Directory

BBDuk (single-end)

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

168.88 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

513 B

fastqc

Directory

STAR

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.02 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

2.49 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

2.08 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.37 kB

BBDuk (single-end)

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

153.34 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

579 B

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled.fastq.gz

74.50 MB

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.66 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

276.72 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

247.45 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

579.63 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

BBDuk (single-end)

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

249.87 MB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

562 B

fastqc

Directory

BBDuk (single-end)

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

157.60 MB

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

555 B

fastqc

Directory

BBDuk (single-end)

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

119.42 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

543 B

fastqc

Directory

BBDuk (single-end)

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

246.18 MB

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

567 B

fastqc

Directory

BBDuk (single-end)

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.fastq.gz

245.80 MB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_statistics.txt.gz

639 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

442 B

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.13 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

273.56 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

238.50 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

567.65 kB

STAR

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.16 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

665 B

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

BBDuk (single-end)

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

168.67 MB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

566 B

fastqc

Directory

Samtools idxstats

idxstat_report.txt

1.39 kB

BBDuk (single-end)

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

176.37 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

539 B

fastqc

Directory

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.64 kB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

278.36 kB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

250.36 kB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

585.11 kB

BBDuk (single-end)

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

263.06 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

586 B

fastqc

Directory

STAR

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.52 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

2.05 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.98 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.18 kB

BBDuk (single-end)

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

255.94 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

608 B

fastqc

Directory

BBDuk (single-end)

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

158.65 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

573 B

fastqc

Directory

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

299.46 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

606 B

fastqc

Directory

STAR

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.24 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.77 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.34 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.56 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.42 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

275.83 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

250.79 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

582.57 kB

STAR

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.07 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Subsample FASTQ (single-end)

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.37 MB

fastqc

Directory

STAR

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

14.29 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

178.19 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.78 MB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.31 MB

FASTQ file (single-end)

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

345.41 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011575_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.80 kB

Samtools idxstats

idxstat_report.txt

1.40 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

fastqc

Directory

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

153.34 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

579 B

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.18 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

98.60 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.78 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.19 MB

Subsample FASTQ (single-end)

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.18 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

177.89 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

421.35 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.46 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

277.84 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

242.85 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

578.34 kB

STAR

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.44 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

2.03 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.58 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.74 kB

STAR

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.47 MB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011552_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

220.30 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

610 B

fastqc

Directory

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.02 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

277.86 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

247.78 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

582.33 kB

STAR

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.96 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.64 kB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.29 MB

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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MultiQC

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Directory

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STAR

ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

FASTQ file (single-end)

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fastqc

Directory

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ERR5011580_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

featureCounts

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results

Directory

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

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183.67 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

STAR

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.50 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.39 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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STAR

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.45 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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MultiQC

multiqc_data

Directory

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1.21 MB

Subsample FASTQ (single-end)

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.35 MB

fastqc

Directory

STAR

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

115.85 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.75 MB

ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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ERR5011579_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

252.11 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

651 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.05 MB

fastqc

Directory

STAR

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.78 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.47 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.91 MB

FASTQ file (single-end)

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

294.02 MB

fastqc

Directory

stderr.txt

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.25 kB

STAR

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.61 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.67 kB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.95 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.80 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.87 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.79 kB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.06 kB

ERR5011599_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

572.95 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

219.10 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

598 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.84 MB

fastqc

Directory

STAR

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

9.56 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.53 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

133.40 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.64 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.03 MB

FASTQ file (single-end)

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

252.58 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

416.26 kB

STAR

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.08 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.12 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.07 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.18 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.76 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.66 kB

ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011600_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.83 MB

fastqc

Directory

STAR

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.30 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.53 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

105.25 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.59 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.91 MB

FASTQ file (single-end)

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

195.27 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.08 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.69 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.55 kB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.11 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.52 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.58 kB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

272.42 kB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

241.90 kB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

570.41 kB

STAR

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.01 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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BBDuk (single-end)

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168.88 MB

ERR5011555_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

513 B

fastqc

Directory

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

213.78 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

576 B

fastqc

Directory

FASTQ file (single-end)

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

248.59 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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Subsample FASTQ (single-end)

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.89 MB

fastqc

Directory

STAR

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.75 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

134.48 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.77 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.18 MB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.24 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.41 kB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.17 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.00 kB

STAR

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.85 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.21 kB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

279.12 kB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

247.98 kB

ERR5011602_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

584.48 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.01 MB

fastqc

Directory

STAR

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.55 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

108.22 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.81 kB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.58 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.99 MB

FASTQ file (single-end)

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

203.13 MB

fastqc

Directory

stderr.txt

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ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

417.36 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.82 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.48 kB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.03 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.87 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.61 kB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

271.96 kB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

243.68 kB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

571.19 kB

STAR

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.15 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

667 B

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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BBDuk (single-end)

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174.63 MB

ERR5011558_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

568 B

fastqc

Directory

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.fastq.gz

207.01 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_statistics.txt.gz

694 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.61 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

1.84 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

1.82 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

8.05 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_rc.tab.gz

203.53 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_tpm.tab.gz

284.33 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_cpm.tab.gz

247.67 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_expressions.txt.gz

589.05 kB

STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.95 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

56 B

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

0 B

Subsample FASTQ (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.fastq.gz

73.74 MB

fastqc

Directory

STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_unmapped.out.mate1.fastq.gz

15.28 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam.bai

1.63 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam

153.02 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_stats.txt

1.82 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_SJ.out.tab

1.70 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bw

2.25 MB

FASTQ file (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2.fastq.gz

276.91 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_fastqc.zip

432.05 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.93 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.14 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

932.48 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.50 kB

STAR

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.20 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.92 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

271.76 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.80 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

318.14 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

601 B

fastqc

Directory

FASTQ file (single-end)

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

369.38 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.36 kB

Subsample FASTQ (single-end)

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.53 MB

fastqc

Directory

STAR

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

18.24 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

181.62 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.37 MB

ERR5011622_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.92 MB

Samtools idxstats

idxstat_report.txt

1.39 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

200.96 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

269.90 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

240.81 kB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

566.39 kB

STAR

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.35 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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BBDuk (single-end)

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

575 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.13 MB

fastqc

Directory

STAR

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.52 MB

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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Samtools idxstats

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STAR

ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011607_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed.bam.bai

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed.bam

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_stats.txt

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_SJ.out.tab

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed.bw

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FASTQ file (single-end)

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2.fastq.gz

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fastqc

Directory

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_fastqc.zip

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Samtools idxstats

idxstat_report.txt

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STAR

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.14 MB

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

1.78 kB

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

1.75 MB

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.47 MB

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

56 B

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

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445 B

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_featureCounts_rc.txt.gz

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_rc.tab.gz

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_tpm.tab.gz

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_cpm.tab.gz

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ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_preprocessed_expressions.txt.gz

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BBDuk (single-end)

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280.57 MB

ERR5011554_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_2_statistics.txt.gz

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fastqc

Directory

Subsample FASTQ (single-end)

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74.50 MB

fastqc

Directory

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-...

BBDuk (single-end)

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188.21 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

STAR

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.51 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.85 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

578.03 kB

STAR

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.17 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.08 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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73.09 MB

fastqc

Directory

FASTQ file (single-end)

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220.09 MB

fastqc

Directory

stderr.txt

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ERR5011583_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

416.51 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.54 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.42 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.19 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.18 kB

STAR

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.25 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

251.59 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

314.12 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

586 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

FASTQ file (single-end)

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

363.09 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

415.66 kB

Subsample FASTQ (single-end)

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.57 MB

fastqc

Directory

STAR

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

12.79 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.63 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

188.64 MB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011621_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.72 MB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.00 MB

fastqc

Directory

STAR

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

13.60 MB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

151.08 MB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.58 MB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.01 MB

FASTQ file (single-end)

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

289.76 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

421.79 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.58 MB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.28 kB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

999.76 kB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.27 kB

STAR

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.83 MB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

667 B

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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BBDuk (single-end)

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249.87 MB

ERR5011556_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

562 B

fastqc

Directory

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

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Subsample FASTQ (single-end)

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.fastq.gz

75.10 MB

fastqc

Directory

STAR

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam.bai

1.62 MB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_stats.txt

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_SJ.out.tab

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_fastqc.zip

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Samtools idxstats

idxstat_report.txt

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STAR

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.32 MB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

1.38 MB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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445 B

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_featureCounts_rc.txt.gz

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_rc.tab.gz

202.50 kB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_tpm.tab.gz

275.36 kB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_cpm.tab.gz

247.31 kB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_expressions.txt.gz

577.83 kB

STAR

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

65.15 MB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

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ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

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BBDuk (single-end)

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245.80 MB

ERR5011560_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_statistics.txt.gz

639 B

fastqc

Directory

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

274.36 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

Subsample FASTQ (single-end)

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74.22 MB

fastqc

Directory

STAR

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

160.70 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.65 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.03 MB

STAR

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.42 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.42 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.06 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.09 kB

STAR

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.98 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.17 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.99 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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FASTQ file (single-end)

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317.23 MB

fastqc

Directory

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2.85 kB

ERR5011585_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.17 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

245.92 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

541 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.40 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.25 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.00 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.21 kB

Subsample FASTQ (single-end)

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.00 MB

fastqc

Directory

STAR

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.83 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

816 B

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.15 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

143.45 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.53 MB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.96 MB

featureCounts

results

Directory

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444 B

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

245.80 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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FASTQ file (single-end)

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

285.15 MB

fastqc

Directory

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2.85 kB

ERR5011586_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.45 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.47 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.66 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.30 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.64 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.63 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

273.13 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

242.26 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.29 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.81 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.53 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

102.40 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.59 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.98 MB

Subsample FASTQ (single-end)

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.06 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

187.86 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

421.51 kB

BBDuk (single-end)

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

162.26 MB

ERR5011625_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

578 B

fastqc

Directory

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.96 MB

fastqc

Directory

STAR

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.29 MB

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

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Samtools idxstats

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STAR

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.91 MB

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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443 B

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

576.40 kB

STAR

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.24 MB

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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BBDuk (single-end)

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157.60 MB

ERR5011561_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

555 B

fastqc

Directory

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-...

BBDuk (single-end)

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217.28 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.37 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.18 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.02 kB

Samtools idxstats

idxstat_report.txt

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featureCounts

results

Directory

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445 B

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.64 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

276.82 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

244.90 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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Subsample FASTQ (single-end)

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.96 MB

fastqc

Directory

STAR

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.92 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

STAR

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

138.35 MB

ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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255.86 MB

fastqc

Directory

stderr.txt

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ERR5011587_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_fastqc.zip

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ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.10 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.15 kB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.17 kB

BBDuk (single-end)

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

335.39 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

602 B

fastqc

Directory

STAR

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.36 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

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445 B

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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FASTQ file (single-end)

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389.02 MB

fastqc

Directory

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2.85 kB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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Subsample FASTQ (single-end)

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.71 MB

fastqc

Directory

STAR

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

16.97 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

196.86 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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1.75 MB

ERR5011629_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.26 MB

Samtools idxstats

idxstat_report.txt

1.39 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

71.47 MB

fastqc

Directory

STAR

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.51 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

78.31 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.64 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.91 MB

FASTQ file (single-end)

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

139.46 MB

fastqc

Directory

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2.85 kB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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Samtools idxstats

idxstat_report.txt

1.37 kB

STAR

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.63 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.47 kB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.13 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.24 kB

STAR

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.13 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

442 B

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3.61 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

238.41 kB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

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119.42 MB

ERR5011559_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

543 B

fastqc

Directory

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

294.51 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

657 B

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.08 MB

fastqc

Directory

STAR

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14.08 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.62 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

177.93 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.77 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.21 MB

STAR

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.49 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.44 kB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.07 MB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

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ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011588_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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featureCounts

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FASTQ file (single-end)

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fastqc

Directory

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Samtools idxstats

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MultiQC

multiqc_data

Directory

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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STAR

ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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featureCounts

results

Directory

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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BBDuk (single-end)

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

MultiQC

multiqc_data

Directory

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FASTQ file (single-end)

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fastqc

Directory

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STAR

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011635_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-...

MultiQC

multiqc_data

Directory

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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STAR

ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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featureCounts

results

Directory

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BBDuk (single-end)

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ERR5011562_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

Subsample FASTQ (single-end)

fastqc

Directory

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FASTQ file (single-end)

fastqc

Directory

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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BBDuk (single-end)

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

MultiQC

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Directory

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STAR

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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STAR

ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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Samtools idxstats

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featureCounts

results

Directory

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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STAR

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011592_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

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337.45 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

658 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.01 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.69 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

200.84 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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STAR

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.91 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.67 kB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.47 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.99 MB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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FASTQ file (single-end)

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

391.18 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011590_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

411.53 kB

Subsample FASTQ (single-end)

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74.35 MB

fastqc

Directory

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.03 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.55 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.29 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.40 kB

STAR

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.00 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.76 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

279.46 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

251.59 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

587.42 kB

BBDuk (single-end)

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

272.81 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

580 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

FASTQ file (single-end)

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

314.94 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

421.33 kB

Subsample FASTQ (single-end)

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.24 MB

fastqc

Directory

STAR

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

9.97 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.58 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

165.18 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.83 MB

ERR5011637_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.28 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.76 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.51 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

85.59 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.81 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.55 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.83 MB

Subsample FASTQ (single-end)

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.33 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

155.30 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

421.11 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

BBDuk (single-end)

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

131.88 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

514 B

fastqc

Directory

STAR

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.53 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.47 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.02 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.05 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

442 B

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

200.58 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

269.33 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

238.60 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

563.16 kB

STAR

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.85 MB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

665 B

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011565_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-c...

BBDuk (single-end)

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed.fastq.gz

225.45 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_statistics.txt.gz

649 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.22 MB

STAR

61.84 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

1.76 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

2.18 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

5.35 kB

Subsample FASTQ (single-end)

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.fastq.gz

74.82 MB

fastqc

Directory

STAR

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_unmapped.out.mate1.fastq.gz

12.49 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed.bam.bai

1.59 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed.bam

170.49 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_stats.txt

1.82 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_SJ.out.tab

1.75 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed.bw

2.24 MB

STAR

64.94 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

128 B

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

876 B

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

481 B

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_rc.tab.gz

204.12 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_tpm.tab.gz

285.65 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_cpm.tab.gz

250.15 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_preprocessed_expressions.txt.gz

593.98 kB

FASTQ file (single-end)

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2.fastq.gz

302.56 MB

fastqc

Directory

stderr.txt

3.55 kB

ERR5011591_Illumina_HiSeq_4000_pairedRR5011589_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_2_fastqc.zip

435.61 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.31 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.50 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.46 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.59 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.92 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

278.99 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.33 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

185.89 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

584 B

fastqc

Directory

STAR

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.53 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

FASTQ file (single-end)

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

216.17 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.20 kB

Subsample FASTQ (single-end)

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.44 MB

fastqc

Directory

STAR

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.98 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

116.87 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.81 kB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.71 MB

ERR5011638_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.18 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.84 MB

fastqc

Directory

STAR

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

5.62 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

106.82 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.83 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.25 MB

FASTQ file (single-end)

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

182.60 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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BBDuk (single-end)

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

155.18 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

Samtools idxstats

idxstat_report.txt

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STAR

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.68 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.56 kB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.22 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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443 B

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ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.17 MB

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011557_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-...

Samtools idxstats

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BBDuk (single-end)

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227.16 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

MultiQC

multiqc_data

Directory

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Subsample FASTQ (single-end)

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73.51 MB

fastqc

Directory

STAR

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

11.89 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.58 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

139.74 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.81 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.26 MB

STAR

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.76 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.89 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.37 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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FASTQ file (single-end)

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

264.87 MB

fastqc

Directory

stderr.txt

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ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

417.35 kB

STAR

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.42 MB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

128 B

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011604_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

9.90 MB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.51 MB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

106.54 MB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.50 MB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.87 MB

Subsample FASTQ (single-end)

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.77 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

197.74 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.28 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.88 MB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.39 kB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.36 MB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.98 MB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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BBDuk (single-end)

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168.67 MB

ERR5011564_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

66.48 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.61 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.67 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

68.44 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

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ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

272.60 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

240.05 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

568.93 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.39 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

119.55 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.55 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.99 MB

Subsample FASTQ (single-end)

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77.98 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

197.64 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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Samtools idxstats

idxstat_report.txt

1.38 kB

BBDuk (single-end)

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

158.65 MB

ERR5011578_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

573 B

fastqc

Directory

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-...

BBDuk (single-end)

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184.14 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_statistics.txt.gz

517 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.45 MB

fastqc

Directory

STAR

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.23 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

117.02 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.77 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bw

2.15 MB

FASTQ file (single-end)

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1.fastq.gz

213.46 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.36 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.53 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.55 MB

ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011616_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

224.78 MB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

577 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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73.91 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

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fastqc

Directory

stderr.txt

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.32 MB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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STAR

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.83 MB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011571_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.37 MB

fastqc

Directory

STAR

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

9.93 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.58 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

159.63 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.77 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.24 MB

FASTQ file (single-end)

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

303.82 MB

fastqc

Directory

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.92 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.36 kB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.26 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.16 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

665 B

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

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263.06 MB

ERR5011569_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

198.51 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

562 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.55 MB

fastqc

Directory

STAR

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.62 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

127.49 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.93 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.33 MB

STAR

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.94 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.62 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.22 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.66 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

282.40 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

247.79 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

587.75 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.58 MB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

FASTQ file (single-end)

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231.90 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011595_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.42 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

174.34 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

530 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.05 MB

fastqc

Directory

STAR

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

11.31 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

107.22 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.52 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.92 MB

Samtools idxstats

idxstat_report.txt

1.38 kB

FASTQ file (single-end)

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

202.59 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

415.97 kB

STAR

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.13 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.77 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.42 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.28 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.21 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

271.29 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

242.29 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.20 MB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011617_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-...

FASTQ file (single-end)

fastqc

Directory

stderr.txt

2.85 kB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

492.88 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

417.99 kB

BBDuk (single-end)

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

423.32 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

651 B

fastqc

Directory

Subsample FASTQ (single-end)

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.79 MB

fastqc

Directory

STAR

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

23.13 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.63 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

240.89 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.40 MB

STAR

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.80 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.34 kB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.06 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.71 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.34 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

667 B

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.76 kB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

249.67 kB

ERR5011614_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

575.99 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.96 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

71.45 MB

fastqc

Directory

STAR

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.09 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

83.96 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.48 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.84 MB

FASTQ file (single-end)

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

151.15 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.43 kB

BBDuk (single-end)

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

130.05 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

568 B

fastqc

Directory

STAR

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

59.02 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

2.08 MB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.37 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

442 B

ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011613_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

567.65 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.03 MB

fastqc

Directory

STAR

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.42 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

112.66 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.98 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.33 MB

Samtools idxstats

idxstat_report.txt

1.38 kB

FASTQ file (single-end)

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

203.65 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.45 kB

STAR

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.22 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.67 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.38 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.68 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

204.09 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

285.05 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.68 kB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

591.21 kB

STAR

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.16 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

665 B

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

BBDuk (single-end)

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

176.37 MB

ERR5011567_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

539 B

fastqc

Directory

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.fastq.gz

77.28 MB

fastqc

Directory

STAR

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_unmapped.out.mate1.fastq.gz

22.37 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam.bai

1.81 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.bam

288.69 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_stats.txt

1.82 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_SJ.out.tab

1.86 MB

STAR

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

65.29 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

1.56 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

1.43 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

7.53 kB

FASTQ file (single-end)

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2.fastq.gz

524.00 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_fastqc.zip

427.57 kB

STAR

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

67.06 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam.bai

56 B

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled.bam

666 B

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_rc.tab.gz

206.18 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_tpm.tab.gz

292.94 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_cpm.tab.gz

258.96 kB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed_expressions.txt.gz

609.32 kB

BBDuk (single-end)

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_preprocessed.fastq.gz

393.21 MB

ERR5011597_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_2_statistics.txt.gz

711 B

fastqc

Directory

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.90 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

665 B

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.33 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

244.34 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

568.40 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.08 MB

fastqc

Directory

STAR

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

14.37 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

151.70 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.43 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.88 MB

FASTQ file (single-end)

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

298.04 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.19 kB

STAR

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.59 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.57 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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BBDuk (single-end)

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

255.94 MB

ERR5011568_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

featureCounts

results

Directory

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ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

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316.22 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

629 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.33 MB

fastqc

Directory

STAR

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.62 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.65 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

186.98 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.82 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.35 MB

STAR

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.67 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.61 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.50 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.57 kB

STAR

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.00 MB

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

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FASTQ file (single-end)

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366.31 MB

fastqc

Directory

stderr.txt

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ERR5011581_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

418.41 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

STAR

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

99.43 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

7.66 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.71 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.07 MB

STAR

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.89 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

BBDuk (single-end)

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

150.65 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

550 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.54 MB

fastqc

Directory

STAR

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.04 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.50 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.31 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.43 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.26 kB

ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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Samtools idxstats

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FASTQ file (single-end)

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176.62 MB

fastqc

Directory

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ERR5011594_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

419.18 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

262.37 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

609 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.29 MB

fastqc

Directory

STAR

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

12.38 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

159.86 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.69 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.14 MB

STAR

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.58 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.52 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.10 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.90 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

274.94 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

249.22 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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FASTQ file (single-end)

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305.07 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011593_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

416.38 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

205.94 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

290.56 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

253.65 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.34 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

128 B

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.39 kB

BBDuk (single-end)

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

246.73 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

672 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.49 MB

fastqc

Directory

STAR

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10.25 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.62 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

154.40 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

2.16 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.68 MB

STAR

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.83 MB

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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FASTQ file (single-end)

ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

288.09 MB

fastqc

Directory

stderr.txt

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ERR5011596_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

75.49 MB

fastqc

Directory

STAR

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

32.13 MB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.62 MB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

289.81 MB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.88 MB

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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featureCounts

results

Directory

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

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ERR5011601_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

multiqc_report.html

1.21 MB

multiqc_data

Directory

STAR

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.72 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.47 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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BBDuk (single-end)

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263.79 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

STAR

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

152.54 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.40 MB

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.92 MB

fastqc

Directory

Samtools idxstats

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FASTQ file (single-end)

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

307.93 MB

fastqc

Directory

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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featureCounts

results

Directory

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445 B

ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011603_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-...

BBDuk (single-end)

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170.56 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

Subsample FASTQ (single-end)

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fastqc

Directory

STAR

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.90 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

111.15 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.73 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.10 MB

FASTQ file (single-end)

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200.98 MB

fastqc

Directory

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ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.74 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.93 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.88 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.49 MB

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011606_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

Subsample FASTQ (single-end)

fastqc

Directory

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.99 MB

BBDuk (single-end)

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

263.23 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

703 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.12 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

162.61 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.65 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.15 MB

FASTQ file (single-end)

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

313.77 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

423.26 kB

STAR

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.42 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.58 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.14 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

7.15 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.81 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

889 B

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.58 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

273.80 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

247.83 kB

ERR5011611_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

576.92 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-...

BBDuk (single-end)

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

133.53 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

566 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

6.73 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

91.33 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.63 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.00 MB

Subsample FASTQ (single-end)

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.70 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

159.15 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

423.00 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.28 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.95 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

2.02 MB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011605_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.00 kB

featureCounts

results

Directory

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442 B

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fastqc

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STAR

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ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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Subsample FASTQ (single-end)

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fastqc

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featureCounts

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STAR

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ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011608_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

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fastqc

Directory

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ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

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fastqc

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STAR

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ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

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Directory

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ERR5011610_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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Samtools idxstats

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STAR

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MultiQC

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

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Directory

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STAR

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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Subsample FASTQ (single-end)

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Directory

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fastqc

Directory

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Samtools idxstats

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featureCounts

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Directory

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STAR

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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STAR

ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011609_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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BBDuk (single-end)

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fastqc

Directory

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-...

BBDuk (single-end)

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

MultiQC

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Directory

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011615_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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Samtools idxstats

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ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-...

featureCounts

results

Directory

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444 B

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

202.96 kB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

277.24 kB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

247.79 kB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

581.38 kB

BBDuk (single-end)

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

221.34 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_statistics.txt.gz

586 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.89 MB

fastqc

Directory

STAR

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

11.04 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

135.76 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.70 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bw

2.16 MB

FASTQ file (single-end)

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1.fastq.gz

258.19 MB

fastqc

Directory

stderr.txt

2.99 kB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_fastqc.zip

418.05 kB

STAR

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.16 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.66 kB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.25 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.83 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.83 MB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011626_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-...

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.67 MB

fastqc

Directory

STAR

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

4.67 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

102.12 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.81 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

2.10 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bw

2.46 MB

FASTQ file (single-end)

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1.fastq.gz

177.26 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_fastqc.zip

418.61 kB

STAR

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.76 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.54 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.06 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

6.33 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

204.48 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

288.30 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.20 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

594.86 kB

STAR

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.98 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.38 kB

BBDuk (single-end)

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

152.57 MB

ERR5011618_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_statistics.txt.gz

558 B

fastqc

Directory

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

303.32 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

612 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.21 MB

fastqc

Directory

STAR

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.90 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.61 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

177.82 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.80 MB

FASTQ file (single-end)

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

352.27 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

416.38 kB

STAR

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.56 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.20 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1010.40 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.03 kB

STAR

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.91 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.40 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

203.66 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

277.82 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

251.73 kB

ERR5011619_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

585.55 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

313.99 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

612 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.42 MB

fastqc

Directory

STAR

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

15.06 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.65 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

187.68 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.79 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.39 MB

FASTQ file (single-end)

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

364.02 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

420.05 kB

STAR

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.19 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.55 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.28 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.43 kB

Samtools idxstats

idxstat_report.txt

1.39 kB

STAR

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.09 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

204.02 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

279.45 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

252.98 kB

ERR5011620_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

589.05 kB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-...

BBDuk (single-end)

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

236.03 MB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_statistics.txt.gz

540 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

11.02 MB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bam

142.04 MB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

1.82 kB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.58 MB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.02 MB

Subsample FASTQ (single-end)

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.86 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1.fastq.gz

272.04 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_fastqc.zip

422.29 kB

STAR

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.03 MB

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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featureCounts

results

Directory

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011623_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicg_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

MultiQC

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Directory

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.07 MB

ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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STAR

ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.39 MB

ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

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Directory

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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BBDuk (single-end)

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181.72 MB

ERR5011624_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

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188.17 MB

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.57 MB

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

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fastqc

Directory

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STAR

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.12 MB

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011627_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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MultiQC

multiqc_data

Directory

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

STAR

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.79 MB

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.78 MB

ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

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445 B

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011628_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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Samtools idxstats

idxstat_report.txt

1.39 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-...

BBDuk (single-end)

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

171.94 MB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

598 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

5.88 MB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

FASTQ file (single-end)

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fastqc

Directory

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.13 MB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.57 MB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

164 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011630_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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Samtools idxstats

idxstat_report.txt

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-...

BBDuk (single-end)

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

120.40 MB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

513 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.56 MB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

139.77 MB

fastqc

Directory

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.81 MB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.56 kB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.28 MB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.53 MB

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011631_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

258.09 MB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

606 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.42 MB

fastqc

Directory

STAR

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

155.61 MB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.55 MB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.95 MB

FASTQ file (single-end)

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

298.95 MB

fastqc

Directory

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.04 MB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.06 kB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

898.04 kB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

4.00 kB

Samtools idxstats

idxstat_report.txt

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STAR

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.22 MB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011632_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

573.68 kB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

291.24 MB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

608 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

74.78 MB

fastqc

Directory

STAR

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

16.26 MB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

171.85 MB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.49 MB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

1.95 MB

FASTQ file (single-end)

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338.71 MB

fastqc

Directory

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ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.68 MB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.16 kB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.51 MB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

445 B

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

201.31 kB

ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011633_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-...

BBDuk (single-end)

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

194.81 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_statistics.txt.gz

677 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

8.99 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.54 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.bam

124.37 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.81 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.bw

2.20 MB

Subsample FASTQ (single-end)

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73.77 MB

fastqc

Directory

FASTQ file (single-end)

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1.fastq.gz

228.41 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.59 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.44 kB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.01 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.41 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

STAR

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.83 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

667 B

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

280.39 kB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

247.78 kB

ERR5011634_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

585.83 kB

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-...

BBDuk (single-end)

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

259.42 MB

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_statistics.txt.gz

577 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.89 MB

fastqc

Directory

STAR

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

11.90 MB

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.62 MB

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.bam

157.61 MB

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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Samtools idxstats

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STAR

ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011636_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurlf_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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featureCounts

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

MultiQC

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Directory

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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STAR

ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011639_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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featureCounts

results

Directory

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

featureCounts

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results

Directory

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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MultiQC

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Directory

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BBDuk (single-end)

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ERR5011643_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-...

BBDuk (single-end)

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

MultiQC

multiqc_data

Directory

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.61 MB

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.27 MB

ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011640_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicurof_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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Samtools idxstats

idxstat_report.txt

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

fastqc

Directory

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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Subsample FASTQ (single-end)

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73.87 MB

fastqc

Directory

STAR

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

242.94 MB

fastqc

Directory

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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STAR

ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011570_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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MultiQC

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Directory

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

MultiQC

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Directory

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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featureCounts

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011641_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

FASTQ file (single-end)

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Directory

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BBDuk (single-end)

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

STAR

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

STAR

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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featureCounts

results

Directory

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011573_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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Samtools idxstats

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MultiQC

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Directory

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

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fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

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STAR

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

FASTQ file (single-end)

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fastqc

Directory

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STAR

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

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STAR

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.70 MB

ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011566_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

145.25 MB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

549 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

95.41 MB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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fastqc

Directory

FASTQ file (single-end)

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169.28 MB

fastqc

Directory

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.35 MB

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

200 B

ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011563_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

1.38 kB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-...

BBDuk (single-end)

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

291.66 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_statistics.txt.gz

654 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

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74.33 MB

fastqc

Directory

STAR

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

12.17 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.95 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1.fastq.gz

339.38 MB

fastqc

Directory

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.53 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.25 kB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.09 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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STAR

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

64.06 MB

ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011642_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profilicu_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

595.51 kB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

173.46 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

603 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

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Subsample FASTQ (single-end)

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

73.12 MB

fastqc

Directory

STAR

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.55 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

110.12 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.72 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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FASTQ file (single-end)

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

202.22 MB

fastqc

Directory

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.64 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.29 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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Samtools idxstats

idxstat_report.txt

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featureCounts

results

Directory

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.28 MB

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011572_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

Subsample FASTQ (single-end)

fastqc

Directory

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73.25 MB

BBDuk (single-end)

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

204.70 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

649 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

10.72 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.56 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

124.75 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.70 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.09 MB

FASTQ file (single-end)

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

236.43 MB

fastqc

Directory

stderr.txt

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ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.00 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

1.39 kB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.13 kB

Samtools idxstats

idxstat_report.txt

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STAR

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.24 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

featureCounts

results

Directory

featureCounts_rc.txt.summary

443 B

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.61 MB

ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011577_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

206.87 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

714 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

Subsample FASTQ (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.fastq.gz

72.85 MB

fastqc

Directory

STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

127.31 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.73 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.18 MB

FASTQ file (single-end)

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

243.95 MB

fastqc

Directory

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.51 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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STAR

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.86 MB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

0 B

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011582_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.fastq.gz

186.96 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

593 B

fastqc

Directory

Subsample FASTQ (single-end)

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73.30 MB

fastqc

Directory

STAR

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_unmapped.out.mate1.fastq.gz

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

2.25 MB

FASTQ file (single-end)

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1.fastq.gz

215.66 MB

fastqc

Directory

stderr.txt

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

417.62 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

61.64 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

1.27 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.79 kB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

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3.61 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

246.88 kB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

585.70 kB

STAR

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

63.37 MB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011584_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-...

BBDuk (single-end)

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158.29 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_statistics.txt.gz

601 B

fastqc

Directory

MultiQC

multiqc_data

Directory

multiqc_report.html

1.21 MB

STAR

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6.23 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam.bai

1.59 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bam

103.93 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_stats.txt

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_SJ.out.tab

1.90 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed.bw

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Subsample FASTQ (single-end)

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72.60 MB

fastqc

Directory

FASTQ file (single-end)

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183.57 MB

fastqc

Directory

stderr.txt

2.85 kB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_fastqc.zip

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STAR

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

60.51 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

5.84 kB

Samtools idxstats

idxstat_report.txt

1.38 kB

featureCounts

results

Directory

featureCounts_rc.txt.summary

444 B

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_featureCounts_rc.txt.gz

3.62 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_rc.tab.gz

204.00 kB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_tpm.tab.gz

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_cpm.tab.gz

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ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_expressions.txt.gz

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STAR

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_unmapped.out.mate1.fastq.gz

62.86 MB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam.bai

56 B

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled.bam

666 B

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_stats.txt

1.77 kB

ERR5011598_Illumina_HiSeq_4000_paired_end_sequencing_Single-cell_transcriptome_profiling_of_Sox2-low_iPS_cells_1_preprocessed_downsampled_SJ.out.tab

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