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Folder iconmiclip_abclonal_202203

Weijia Zhang
March 22, 2022
re-run of project PM21205

hek_dmso

FASTQ file (CLIP)
hek-dmso.fastq.gz
1.52 MB
fastqc
Directory
hek-dmso_fastqc.zip
555.84 kB
iCLIP reads proxy
hek-dmso_mapped_to_genome.fastq.gz
1.47 MB
fastqc
Directory
iCount RNA-maps
hek-dmso_mapped_to_genome_single.tar.gz
261.08 kB
Paraclu
hek-dmso_mapped_to_genome_single_peaks.bed.gz
229 B
Cutadapt (single-end)
report.txt
643 B
hek-dmso_trimmed.fastq.gz
1.48 MB
fastqc
Directory
STAR
hek-dmso_trimmed_unmapped.out.mate1.fastq.gz
1.47 MB
hek-dmso_trimmed.bam.bai
10.23 kB
hek-dmso_trimmed.bam
1.88 MB
hek-dmso_trimmed_stats.txt
1.77 kB
hek-dmso_trimmed_SJ.out.tab
0 B
hek-dmso_trimmed.bw
103.29 kB
iCount xlsites
hek-dmso_premapped_to_ncRNAs_skipped.bam
4.07 kB
hek-dmso_premapped_to_ncRNAs_single.bed.gz
1.27 kB
hek-dmso_premapped_to_ncRNAs_singleAndMulti.bed.gz
2.44 kB
hek-dmso_premapped_to_ncRNAs_reads_single.bed.gz
1.33 kB
hek-dmso_premapped_to_ncRNAs_single.bedgraph
164 B
STAR
hek-dmso_mapped_to_genome_unmapped.out.mate1.fastq.gz
504.14 kB
hek-dmso_mapped_to_genome.bam.bai
1.63 MB
hek-dmso_mapped_to_genome.bam
2.33 MB
hek-dmso_mapped_to_genome_stats.txt
1.79 kB
hek-dmso_mapped_to_genome_SJ.out.tab
4.46 kB
hek-dmso_mapped_to_genome.bw
16.77 kB
iCount xlsites
hek-dmso_mapped_to_genome_skipped.bam
3.05 kB
hek-dmso_mapped_to_genome_single.bed.gz
22.13 kB
hek-dmso_mapped_to_genome_singleAndMulti.bed.gz
82.54 kB
hek-dmso_mapped_to_genome_reads_single.bed.gz
23.40 kB
hek-dmso_mapped_to_genome_single.bedgraph
69.78 kB
iCount summary
hek-dmso_mapped_to_genome_single_summary_type.tsv
619 B
hek-dmso_mapped_to_genome_single_summary_subtype.tsv
794 B
hek-dmso_mapped_to_genome_single_summary_gene.tsv
165.97 kB
PEKA
4mer analysis of hek-dmso_mapped_to_genome.tar.gz
140.53 kB

MT3i_21.6_C3_16hrs

FASTQ file (CLIP)
mt3i-21-6-c3-16hrs.fastq.gz
241.80 MB
fastqc
Directory
mt3i-21-6-c3-16hrs_fastqc.zip
485.29 kB
iCount RNA-maps
mt3i-21-6-c3-16hrs_mapped_to_genome_single.tar.gz
1.23 MB
Paraclu
mt3i-21-6-c3-16hrs_mapped_to_genome_single_peaks.bed.gz
348.17 kB
Cutadapt (single-end)
report.txt
654 B
mt3i-21-6-c3-16hrs_trimmed.fastq.gz
247.15 MB
fastqc
Directory
STAR
mt3i-21-6-c3-16hrs_trimmed_unmapped.out.mate1.fastq.gz
248.17 MB
mt3i-21-6-c3-16hrs_trimmed.bam.bai
20.56 kB
mt3i-21-6-c3-16hrs_trimmed.bam
292.14 MB
mt3i-21-6-c3-16hrs_trimmed_stats.txt
1.78 kB
mt3i-21-6-c3-16hrs_trimmed_SJ.out.tab
0 B
mt3i-21-6-c3-16hrs_trimmed.bw
105.34 kB
iCount xlsites
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_skipped.bam
4.08 kB
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_single.bed.gz
26.54 kB
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_singleAndMulti.bed.gz
49.12 kB
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_reads_single.bed.gz
27.39 kB
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_single.bedgraph
184 B
iCLIP reads proxy
mt3i-21-6-c3-16hrs_mapped_to_genome.fastq.gz
248.17 MB
fastqc
Directory
STAR
mt3i-21-6-c3-16hrs_mapped_to_genome_unmapped.out.mate1.fastq.gz
41.75 MB
mt3i-21-6-c3-16hrs_mapped_to_genome.bam.bai
4.04 MB
mt3i-21-6-c3-16hrs_mapped_to_genome.bam
241.02 MB
mt3i-21-6-c3-16hrs_mapped_to_genome_stats.txt
1.81 kB
mt3i-21-6-c3-16hrs_mapped_to_genome_SJ.out.tab
712.13 kB
iCount xlsites
mt3i-21-6-c3-16hrs_mapped_to_genome_skipped.bam
4.85 kB
mt3i-21-6-c3-16hrs_mapped_to_genome_single.bed.gz
3.55 MB
mt3i-21-6-c3-16hrs_mapped_to_genome_singleAndMulti.bed.gz
6.23 MB
mt3i-21-6-c3-16hrs_mapped_to_genome_reads_single.bed.gz
3.74 MB
mt3i-21-6-c3-16hrs_mapped_to_genome_single.bedgraph
14.94 MB
iCount summary
mt3i-21-6-c3-16hrs_mapped_to_genome_single_summary_type.tsv
661 B
mt3i-21-6-c3-16hrs_mapped_to_genome_single_summary_subtype.tsv
1.03 kB
mt3i-21-6-c3-16hrs_mapped_to_genome_single_summary_gene.tsv
2.37 MB
PEKA
4mer analysis of mt3i-21-6-c3-16hrs_mapped_to_genome.tar.gz
634.77 kB

hek_20uM

FASTQ file (CLIP)
hek-20um.fastq.gz
72.40 MB
fastqc
Directory
hek-20um_fastqc.zip
520.95 kB
Cutadapt (single-end)
report.txt
644 B
hek-20um_trimmed.fastq.gz
69.68 MB
fastqc
Directory
iCLIP reads proxy
hek-20um_mapped_to_genome.fastq.gz
69.85 MB
fastqc
Directory
Paraclu
hek-20um_mapped_to_genome_single_peaks.bed.gz
90.23 kB
iCount RNA-maps
hek-20um_mapped_to_genome_single.tar.gz
751.48 kB
PEKA
4mer analysis of hek-20um_mapped_to_genome.tar.gz
534.16 kB
STAR
hek-20um_trimmed_unmapped.out.mate1.fastq.gz
69.85 MB
hek-20um_trimmed.bam.bai
20.49 kB
hek-20um_trimmed.bam
85.49 MB
hek-20um_trimmed_stats.txt
1.78 kB
hek-20um_trimmed_SJ.out.tab
0 B
hek-20um_trimmed.bw
105.41 kB
iCount xlsites
hek-20um_premapped_to_ncRNAs_skipped.bam
4.07 kB
hek-20um_premapped_to_ncRNAs_single.bed.gz
15.62 kB
hek-20um_premapped_to_ncRNAs_singleAndMulti.bed.gz
30.75 kB
hek-20um_premapped_to_ncRNAs_reads_single.bed.gz
16.09 kB
hek-20um_premapped_to_ncRNAs_single.bedgraph
164 B
STAR
hek-20um_mapped_to_genome_unmapped.out.mate1.fastq.gz
14.50 MB
hek-20um_mapped_to_genome.bam.bai
4.77 MB
hek-20um_mapped_to_genome.bam
102.68 MB
hek-20um_mapped_to_genome_stats.txt
1.80 kB
hek-20um_mapped_to_genome_SJ.out.tab
296.19 kB
hek-20um_mapped_to_genome.bw
33.18 kB
iCount xlsites
hek-20um_mapped_to_genome_skipped.bam
3.37 kB
hek-20um_mapped_to_genome_single.bed.gz
1.01 MB
hek-20um_mapped_to_genome_singleAndMulti.bed.gz
4.45 MB
hek-20um_mapped_to_genome_reads_single.bed.gz
1.05 MB
hek-20um_mapped_to_genome_single.bedgraph
3.92 MB
iCount summary
hek-20um_mapped_to_genome_single_summary_type.tsv
656 B
hek-20um_mapped_to_genome_single_summary_subtype.tsv
907 B
hek-20um_mapped_to_genome_single_summary_gene.tsv
1.86 MB

MT3i_21.6_C3_DMSO

FASTQ file (CLIP)
mt3i-21-6-c3-dmso.fastq.gz
762.05 MB
fastqc
Directory
mt3i-21-6-c3-dmso_fastqc.zip
478.70 kB
iCLIP reads proxy
mt3i-21-6-c3-dmso_mapped_to_genome.fastq.gz
781.67 MB
fastqc
Directory
iCount RNA-maps
mt3i-21-6-c3-dmso_mapped_to_genome_single.tar.gz
1.74 MB
Paraclu
mt3i-21-6-c3-dmso_mapped_to_genome_single_peaks.bed.gz
824.68 kB
Cutadapt (single-end)
report.txt
653 B
mt3i-21-6-c3-dmso_trimmed.fastq.gz
778.04 MB
fastqc
Directory
STAR
mt3i-21-6-c3-dmso_trimmed_unmapped.out.mate1.fastq.gz
781.67 MB
mt3i-21-6-c3-dmso_trimmed.bam.bai
20.56 kB
mt3i-21-6-c3-dmso_trimmed.bam
910.78 MB
mt3i-21-6-c3-dmso_trimmed_stats.txt
1.78 kB
mt3i-21-6-c3-dmso_trimmed_SJ.out.tab
0 B
mt3i-21-6-c3-dmso_trimmed.bw
105.68 kB
iCount xlsites
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_skipped.bam
4.08 kB
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_single.bed.gz
33.98 kB
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_singleAndMulti.bed.gz
61.01 kB
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_reads_single.bed.gz
35.25 kB
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_single.bedgraph
182 B
STAR
mt3i-21-6-c3-dmso_mapped_to_genome_unmapped.out.mate1.fastq.gz
150.78 MB
mt3i-21-6-c3-dmso_mapped_to_genome.bam.bai
4.26 MB
mt3i-21-6-c3-dmso_mapped_to_genome.bam
746.64 MB
mt3i-21-6-c3-dmso_mapped_to_genome_stats.txt
1.81 kB
mt3i-21-6-c3-dmso_mapped_to_genome_SJ.out.tab
1.35 MB
iCount xlsites
mt3i-21-6-c3-dmso_mapped_to_genome_skipped.bam
5.70 kB
mt3i-21-6-c3-dmso_mapped_to_genome_single.bed.gz
7.48 MB
mt3i-21-6-c3-dmso_mapped_to_genome_singleAndMulti.bed.gz
13.99 MB
mt3i-21-6-c3-dmso_mapped_to_genome_reads_single.bed.gz
7.94 MB
mt3i-21-6-c3-dmso_mapped_to_genome_single.bedgraph
31.94 MB
iCount summary
mt3i-21-6-c3-dmso_mapped_to_genome_single_summary_type.tsv
673 B
mt3i-21-6-c3-dmso_mapped_to_genome_single_summary_subtype.tsv
1.04 kB
mt3i-21-6-c3-dmso_mapped_to_genome_single_summary_gene.tsv
2.75 MB
PEKA
4mer analysis of mt3i-21-6-c3-dmso_mapped_to_genome.tar.gz
703.56 kB

JE_10weeks_C3_21.2_sample8_23

FASTQ file (CLIP)
je-10weeks-c3-21-2-sample8-23.fastq.gz
215.45 MB
fastqc
Directory
je-10weeks-c3-21-2-sample8-23_fastqc.zip
483.63 kB
iCount RNA-maps
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single.tar.gz
1000.89 kB
Paraclu
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single_peaks.bed.gz
167.64 kB
Cutadapt (single-end)
report.txt
665 B
je-10weeks-c3-21-2-sample8-23_trimmed.fastq.gz
220.18 MB
fastqc
Directory
STAR
je-10weeks-c3-21-2-sample8-23_trimmed_unmapped.out.mate1.fastq.gz
197.25 MB
je-10weeks-c3-21-2-sample8-23_trimmed.bam.bai
20.28 kB
je-10weeks-c3-21-2-sample8-23_trimmed.bam
246.51 MB
je-10weeks-c3-21-2-sample8-23_trimmed_stats.txt
1.78 kB
je-10weeks-c3-21-2-sample8-23_trimmed_SJ.out.tab
0 B
je-10weeks-c3-21-2-sample8-23_trimmed.bw
105.08 kB
iCLIP reads proxy
je-10weeks-c3-21-2-sample8-23_mapped_to_genome.fastq.gz
197.25 MB
fastqc
Directory
iCount xlsites
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_single.bed.gz
40.42 kB
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_singleAndMulti.bed.gz
49.21 kB
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_reads_single.bed.gz
43.39 kB
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_single.bedgraph
206 B
STAR
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_unmapped.out.mate1.fastq.gz
26.96 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome.bam.bai
3.58 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome.bam
175.84 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_stats.txt
1.81 kB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_SJ.out.tab
638.93 kB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome.bw
34.80 kB
iCount xlsites
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_skipped.bam
3.26 kB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single.bed.gz
2.04 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_singleAndMulti.bed.gz
3.56 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_reads_single.bed.gz
2.19 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single.bedgraph
7.84 MB
iCount summary
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single_summary_type.tsv
669 B
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single_summary_subtype.tsv
1.03 kB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single_summary_gene.tsv
2.19 MB
PEKA
4mer analysis of je-10weeks-c3-21-2-sample8-23_mapped_to_genome.tar.gz
604.42 kB

hek_20uM_IgG

FASTQ file (CLIP)
hek-20um-igg.fastq.gz
43.20 MB
fastqc
Directory
hek-20um-igg_fastqc.zip
613.26 kB
iCLIP reads proxy
hek-20um-igg_mapped_to_genome.fastq.gz
39.68 MB
fastqc
Directory
iCount RNA-maps
hek-20um-igg_mapped_to_genome_single.tar.gz
568.78 kB
Paraclu
hek-20um-igg_mapped_to_genome_single_peaks.bed.gz
12.30 kB
PEKA
4mer analysis of hek-20um-igg_mapped_to_genome.tar.gz
420.60 kB
Cutadapt (single-end)
report.txt
648 B
hek-20um-igg_trimmed.fastq.gz
39.99 MB
fastqc
Directory
STAR
hek-20um-igg_trimmed_unmapped.out.mate1.fastq.gz
39.68 MB
hek-20um-igg_trimmed.bam.bai
20.56 kB
hek-20um-igg_trimmed.bam
49.49 MB
hek-20um-igg_trimmed_stats.txt
1.78 kB
hek-20um-igg_trimmed_SJ.out.tab
0 B
hek-20um-igg_trimmed.bw
105.68 kB
iCount xlsites
hek-20um-igg_premapped_to_ncRNAs_skipped.bam
4.08 kB
hek-20um-igg_premapped_to_ncRNAs_single.bed.gz
17.41 kB
hek-20um-igg_premapped_to_ncRNAs_singleAndMulti.bed.gz
33.01 kB
hek-20um-igg_premapped_to_ncRNAs_reads_single.bed.gz
17.91 kB
hek-20um-igg_premapped_to_ncRNAs_single.bedgraph
172 B
STAR
hek-20um-igg_mapped_to_genome_unmapped.out.mate1.fastq.gz
19.87 MB
hek-20um-igg_mapped_to_genome.bam.bai
5.00 MB
hek-20um-igg_mapped_to_genome.bam
87.96 MB
hek-20um-igg_mapped_to_genome_stats.txt
1.81 kB
hek-20um-igg_mapped_to_genome_SJ.out.tab
284.22 kB
hek-20um-igg_mapped_to_genome.bw
30.12 kB
iCount xlsites
hek-20um-igg_mapped_to_genome_skipped.bam
3.06 kB
hek-20um-igg_mapped_to_genome_single.bed.gz
427.67 kB
hek-20um-igg_mapped_to_genome_singleAndMulti.bed.gz
4.96 MB
hek-20um-igg_mapped_to_genome_reads_single.bed.gz
440.20 kB
hek-20um-igg_mapped_to_genome_single.bedgraph
1.46 MB
iCount summary
hek-20um-igg_mapped_to_genome_single_summary_type.tsv
652 B
hek-20um-igg_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
hek-20um-igg_mapped_to_genome_single_summary_gene.tsv
1.48 MB

MT3i_21.6_C3_24hrs

FASTQ file (CLIP)
mt3i-21-6-c3-24hrs.fastq.gz
79.14 MB
fastqc
Directory
mt3i-21-6-c3-24hrs_fastqc.zip
505.11 kB
iCount RNA-maps
mt3i-21-6-c3-24hrs_mapped_to_genome_single.tar.gz
856.24 kB
Paraclu
mt3i-21-6-c3-24hrs_mapped_to_genome_single_peaks.bed.gz
122.86 kB
Cutadapt (single-end)
report.txt
653 B
mt3i-21-6-c3-24hrs_trimmed.fastq.gz
80.75 MB
fastqc
Directory
STAR
mt3i-21-6-c3-24hrs_trimmed_unmapped.out.mate1.fastq.gz
81.06 MB
mt3i-21-6-c3-24hrs_trimmed.bam.bai
20.56 kB
mt3i-21-6-c3-24hrs_trimmed.bam
95.33 MB
mt3i-21-6-c3-24hrs_trimmed_stats.txt
1.78 kB
mt3i-21-6-c3-24hrs_trimmed_SJ.out.tab
0 B
mt3i-21-6-c3-24hrs_trimmed.bw
104.94 kB
iCLIP reads proxy
mt3i-21-6-c3-24hrs_mapped_to_genome.fastq.gz
81.06 MB
fastqc
Directory
iCount xlsites
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_skipped.bam
4.08 kB
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_single.bed.gz
13.20 kB
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_singleAndMulti.bed.gz
24.04 kB
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_reads_single.bed.gz
13.63 kB
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_single.bedgraph
184 B
STAR
mt3i-21-6-c3-24hrs_mapped_to_genome_unmapped.out.mate1.fastq.gz
14.08 MB
mt3i-21-6-c3-24hrs_mapped_to_genome.bam.bai
2.96 MB
mt3i-21-6-c3-24hrs_mapped_to_genome.bam
78.92 MB
mt3i-21-6-c3-24hrs_mapped_to_genome_stats.txt
1.80 kB
mt3i-21-6-c3-24hrs_mapped_to_genome_SJ.out.tab
297.70 kB
mt3i-21-6-c3-24hrs_mapped_to_genome.bw
24.83 kB
iCount xlsites
mt3i-21-6-c3-24hrs_mapped_to_genome_skipped.bam
4.01 kB
mt3i-21-6-c3-24hrs_mapped_to_genome_single.bed.gz
1.30 MB
mt3i-21-6-c3-24hrs_mapped_to_genome_singleAndMulti.bed.gz
2.11 MB
mt3i-21-6-c3-24hrs_mapped_to_genome_reads_single.bed.gz
1.37 MB
mt3i-21-6-c3-24hrs_mapped_to_genome_single.bedgraph
5.24 MB
iCount summary
mt3i-21-6-c3-24hrs_mapped_to_genome_single_summary_type.tsv
653 B
mt3i-21-6-c3-24hrs_mapped_to_genome_single_summary_subtype.tsv
897 B
mt3i-21-6-c3-24hrs_mapped_to_genome_single_summary_gene.tsv
1.92 MB
PEKA
4mer analysis of mt3i-21-6-c3-24hrs_mapped_to_genome.tar.gz
559.05 kB

JE_10weeks_c1_21.2_sample7_22

FASTQ file (CLIP)
je-10weeks-c1-21-2-sample7-22.fastq.gz
119.26 MB
fastqc
Directory
je-10weeks-c1-21-2-sample7-22_fastqc.zip
543.92 kB
iCount RNA-maps
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single.tar.gz
682.84 kB
Paraclu
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single_peaks.bed.gz
101.85 kB
PEKA
4mer analysis of je-10weeks-c1-21-2-sample7-22_mapped_to_genome.tar.gz
519.23 kB
Cutadapt (single-end)
report.txt
666 B
je-10weeks-c1-21-2-sample7-22_trimmed.fastq.gz
114.66 MB
fastqc
Directory
STAR
je-10weeks-c1-21-2-sample7-22_trimmed_unmapped.out.mate1.fastq.gz
115.00 MB
je-10weeks-c1-21-2-sample7-22_trimmed.bam.bai
20.56 kB
je-10weeks-c1-21-2-sample7-22_trimmed.bam
142.92 MB
je-10weeks-c1-21-2-sample7-22_trimmed_stats.txt
1.78 kB
je-10weeks-c1-21-2-sample7-22_trimmed_SJ.out.tab
0 B
je-10weeks-c1-21-2-sample7-22_trimmed.bw
105.68 kB
iCount xlsites
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_single.bed.gz
16.20 kB
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_singleAndMulti.bed.gz
32.87 kB
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_reads_single.bed.gz
16.60 kB
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_single.bedgraph
206 B
iCLIP reads proxy
je-10weeks-c1-21-2-sample7-22_mapped_to_genome.fastq.gz
115.00 MB
fastqc
Directory
STAR
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_unmapped.out.mate1.fastq.gz
33.06 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome.bam.bai
4.71 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome.bam
180.43 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_stats.txt
1.81 kB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_SJ.out.tab
273.61 kB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome.bw
33.35 kB
iCount xlsites
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_skipped.bam
3.42 kB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single.bed.gz
1.03 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_singleAndMulti.bed.gz
5.35 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_reads_single.bed.gz
1.08 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single.bedgraph
3.84 MB
iCount summary
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single_summary_type.tsv
664 B
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single_summary_subtype.tsv
911 B
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single_summary_gene.tsv
1.98 MB

828_21.19_untreated_20210903_sample7

FASTQ file (CLIP)
828-21-19-untreated-20210903-sample7.fastq.gz
240.49 MB
fastqc
Directory
828-21-19-untreated-20210903-sample7_fastqc.zip
499.12 kB
iCount summary
828-21-19-untreated-20210903-sample7_mapped_to_genome_single_summary_type.tsv
666 B
828-21-19-untreated-20210903-sample7_mapped_to_genome_single_summary_subtype.tsv
986 B
828-21-19-untreated-20210903-sample7_mapped_to_genome_single_summary_gene.tsv
2.26 MB
iCount RNA-maps
828-21-19-untreated-20210903-sample7_mapped_to_genome_single.tar.gz
1.04 MB
Paraclu
828-21-19-untreated-20210903-sample7_mapped_to_genome_single_peaks.bed.gz
259.78 kB
Cutadapt (single-end)
report.txt
672 B
828-21-19-untreated-20210903-sample7_trimmed.fastq.gz
244.08 MB
fastqc
Directory
STAR
828-21-19-untreated-20210903-sample7_trimmed_unmapped.out.mate1.fastq.gz
237.86 MB
828-21-19-untreated-20210903-sample7_trimmed.bam.bai
20.56 kB
828-21-19-untreated-20210903-sample7_trimmed.bam
284.99 MB
828-21-19-untreated-20210903-sample7_trimmed_stats.txt
1.78 kB
828-21-19-untreated-20210903-sample7_trimmed_SJ.out.tab
0 B
828-21-19-untreated-20210903-sample7_trimmed.bw
105.30 kB
iCount xlsites
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_skipped.bam
4.09 kB
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_single.bed.gz
34.63 kB
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_singleAndMulti.bed.gz
46.62 kB
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_reads_single.bed.gz
36.57 kB
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_single.bedgraph
220 B
iCLIP reads proxy
828-21-19-untreated-20210903-sample7_mapped_to_genome.fastq.gz
237.86 MB
fastqc
Directory
STAR
828-21-19-untreated-20210903-sample7_mapped_to_genome_unmapped.out.mate1.fastq.gz
54.85 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome.bam.bai
4.33 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome.bam
254.81 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome_stats.txt
1.81 kB
828-21-19-untreated-20210903-sample7_mapped_to_genome_SJ.out.tab
598.99 kB
828-21-19-untreated-20210903-sample7_mapped_to_genome.bw
33.35 kB
iCount xlsites
828-21-19-untreated-20210903-sample7_mapped_to_genome_skipped.bam
4.59 kB
828-21-19-untreated-20210903-sample7_mapped_to_genome_single.bed.gz
2.44 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome_singleAndMulti.bed.gz
5.65 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome_reads_single.bed.gz
2.58 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome_single.bedgraph
9.89 MB
PEKA
4mer analysis of 828-21-19-untreated-20210903-sample7_mapped_to_genome.tar.gz
614.70 kB

JE_10weeks_829_21.2_sample9_6

FASTQ file (CLIP)
je-10weeks-829-21-2-sample9-6.fastq.gz
150.58 MB
fastqc
Directory
je-10weeks-829-21-2-sample9-6_fastqc.zip
505.77 kB
iCount RNA-maps
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single.tar.gz
889.67 kB
PEKA
4mer analysis of je-10weeks-829-21-2-sample9-6_mapped_to_genome.tar.gz
574.39 kB
Cutadapt (single-end)
report.txt
665 B
je-10weeks-829-21-2-sample9-6_trimmed.fastq.gz
150.68 MB
fastqc
Directory
STAR
je-10weeks-829-21-2-sample9-6_trimmed_unmapped.out.mate1.fastq.gz
150.68 MB
je-10weeks-829-21-2-sample9-6_trimmed.bam.bai
20.42 kB
je-10weeks-829-21-2-sample9-6_trimmed.bam
181.39 MB
je-10weeks-829-21-2-sample9-6_trimmed_stats.txt
1.78 kB
je-10weeks-829-21-2-sample9-6_trimmed_SJ.out.tab
0 B
je-10weeks-829-21-2-sample9-6_trimmed.bw
105.37 kB
iCount xlsites
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_single.bed.gz
19.12 kB
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_singleAndMulti.bed.gz
30.21 kB
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_reads_single.bed.gz
19.88 kB
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_single.bedgraph
206 B
iCLIP reads proxy
je-10weeks-829-21-2-sample9-6_mapped_to_genome.fastq.gz
150.68 MB
fastqc
Directory
STAR
je-10weeks-829-21-2-sample9-6_mapped_to_genome_unmapped.out.mate1.fastq.gz
24.29 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome.bam.bai
4.59 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome.bam
174.42 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_stats.txt
1.81 kB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_SJ.out.tab
387.84 kB
je-10weeks-829-21-2-sample9-6_mapped_to_genome.bw
33.25 kB
iCount xlsites
je-10weeks-829-21-2-sample9-6_mapped_to_genome_skipped.bam
3.07 kB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single.bed.gz
1.65 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_singleAndMulti.bed.gz
5.18 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_reads_single.bed.gz
1.75 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single.bedgraph
6.51 MB
iCount summary
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single_summary_type.tsv
665 B
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single_summary_subtype.tsv
914 B
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single_summary_gene.tsv
2.14 MB
Paraclu
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single_peaks.bed.gz
175.87 kB

JE_10weeks_C1_21.3_sample10_24

FASTQ file (CLIP)
fastqc
Directory
je-10weeks-c1-21-3-sample10-24.fastq.gz
929.00 MB
je-10weeks-c1-21-3-sample10-24_fastqc.zip
464.21 kB
iCount RNA-maps
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single.tar.gz
2.53 MB
Cutadapt (single-end)
report.txt
667 B
je-10weeks-c1-21-3-sample10-24_trimmed.fastq.gz
957.12 MB
fastqc
Directory
STAR
je-10weeks-c1-21-3-sample10-24_trimmed_unmapped.out.mate1.fastq.gz
961.89 MB
je-10weeks-c1-21-3-sample10-24_trimmed.bam.bai
20.56 kB
je-10weeks-c1-21-3-sample10-24_trimmed.bam
1.09 GB
je-10weeks-c1-21-3-sample10-24_trimmed_stats.txt
1.78 kB
je-10weeks-c1-21-3-sample10-24_trimmed_SJ.out.tab
0 B
je-10weeks-c1-21-3-sample10-24_trimmed.bw
105.42 kB
iCount xlsites
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_single.bed.gz
39.10 kB
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_singleAndMulti.bed.gz
66.67 kB
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_reads_single.bed.gz
40.11 kB
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_single.bedgraph
208 B
iCLIP reads proxy
je-10weeks-c1-21-3-sample10-24_mapped_to_genome.fastq.gz
961.89 MB
fastqc
Directory
STAR
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_unmapped.out.mate1.fastq.gz
125.47 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome.bam.bai
3.93 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome.bam
879.65 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_stats.txt
1.81 kB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_SJ.out.tab
2.51 MB
iCount xlsites
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_skipped.bam
5.99 kB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single.bed.gz
14.40 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_singleAndMulti.bed.gz
20.86 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_reads_single.bed.gz
15.09 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single.bedgraph
63.12 MB
Paraclu
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single_peaks.bed.gz
1.27 MB
iCount summary
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single_summary_type.tsv
679 B
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single_summary_subtype.tsv
1.04 kB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single_summary_gene.tsv
2.92 MB
PEKA
4mer analysis of je-10weeks-c1-21-3-sample10-24_mapped_to_genome.tar.gz
769.10 kB

20210716_JE_10weeks_c4

FASTQ file (CLIP)
20210716-je-10weeks-c4.fastq.gz
353.16 MB
fastqc
Directory
20210716-je-10weeks-c4_fastqc.zip
482.64 kB
iCLIP reads proxy
20210716-je-10weeks-c4_mapped_to_genome.fastq.gz
359.19 MB
fastqc
Directory
iCount RNA-maps
20210716-je-10weeks-c4_mapped_to_genome_single.tar.gz
1.65 MB
Cutadapt (single-end)
report.txt
658 B
20210716-je-10weeks-c4_trimmed.fastq.gz
361.01 MB
fastqc
Directory
STAR
20210716-je-10weeks-c4_trimmed_unmapped.out.mate1.fastq.gz
359.19 MB
20210716-je-10weeks-c4_trimmed.bam.bai
20.56 kB
20210716-je-10weeks-c4_trimmed.bam
423.86 MB
20210716-je-10weeks-c4_trimmed_stats.txt
1.78 kB
20210716-je-10weeks-c4_trimmed_SJ.out.tab
0 B
20210716-je-10weeks-c4_trimmed.bw
105.57 kB
iCount xlsites
20210716-je-10weeks-c4_premapped_to_ncRNAs_skipped.bam
4.08 kB
20210716-je-10weeks-c4_premapped_to_ncRNAs_single.bed.gz
39.35 kB
20210716-je-10weeks-c4_premapped_to_ncRNAs_singleAndMulti.bed.gz
58.29 kB
20210716-je-10weeks-c4_premapped_to_ncRNAs_reads_single.bed.gz
40.54 kB
20210716-je-10weeks-c4_premapped_to_ncRNAs_single.bedgraph
192 B
STAR
20210716-je-10weeks-c4_mapped_to_genome_unmapped.out.mate1.fastq.gz
63.07 MB
20210716-je-10weeks-c4_mapped_to_genome.bam.bai
4.27 MB
20210716-je-10weeks-c4_mapped_to_genome.bam
406.77 MB
20210716-je-10weeks-c4_mapped_to_genome_stats.txt
1.81 kB
20210716-je-10weeks-c4_mapped_to_genome_SJ.out.tab
1.42 MB
iCount xlsites
20210716-je-10weeks-c4_mapped_to_genome_skipped.bam
4.13 kB
20210716-je-10weeks-c4_mapped_to_genome_single.bed.gz
6.04 MB
20210716-je-10weeks-c4_mapped_to_genome_singleAndMulti.bed.gz
12.24 MB
20210716-je-10weeks-c4_mapped_to_genome_reads_single.bed.gz
6.31 MB
20210716-je-10weeks-c4_mapped_to_genome_single.bedgraph
25.65 MB
iCount summary
20210716-je-10weeks-c4_mapped_to_genome_single_summary_type.tsv
673 B
20210716-je-10weeks-c4_mapped_to_genome_single_summary_subtype.tsv
991 B
20210716-je-10weeks-c4_mapped_to_genome_single_summary_gene.tsv
2.61 MB
Paraclu
20210716-je-10weeks-c4_mapped_to_genome_single_peaks.bed.gz
524.72 kB
PEKA
4mer analysis of 20210716-je-10weeks-c4_mapped_to_genome.tar.gz
687.93 kB

mixture of above (IgG)

FASTQ file (CLIP)
mixture-of-above-igg.fastq.gz
89.45 MB
fastqc
Directory
mixture-of-above-igg_fastqc.zip
570.34 kB
iCLIP reads proxy
mixture-of-above-igg_mapped_to_genome.fastq.gz
86.69 MB
fastqc
Directory
Paraclu
mixture-of-above-igg_mapped_to_genome_single_peaks.bed.gz
41.59 kB
PEKA
4mer analysis of mixture-of-above-igg_mapped_to_genome.tar.gz
471.94 kB
Cutadapt (single-end)
report.txt
655 B
mixture-of-above-igg_trimmed.fastq.gz
87.91 MB
fastqc
Directory
STAR
mixture-of-above-igg_trimmed_unmapped.out.mate1.fastq.gz
86.69 MB
mixture-of-above-igg_trimmed.bam.bai
20.56 kB
mixture-of-above-igg_trimmed.bam
108.68 MB
mixture-of-above-igg_trimmed_stats.txt
1.78 kB
mixture-of-above-igg_trimmed_SJ.out.tab
0 B
mixture-of-above-igg_trimmed.bw
105.85 kB
iCount xlsites
mixture-of-above-igg_premapped_to_ncRNAs_skipped.bam
4.08 kB
mixture-of-above-igg_premapped_to_ncRNAs_single.bed.gz
23.67 kB
mixture-of-above-igg_premapped_to_ncRNAs_singleAndMulti.bed.gz
38.28 kB
mixture-of-above-igg_premapped_to_ncRNAs_reads_single.bed.gz
24.72 kB
mixture-of-above-igg_premapped_to_ncRNAs_single.bedgraph
192 B
STAR
mixture-of-above-igg_mapped_to_genome_unmapped.out.mate1.fastq.gz
29.50 MB
mixture-of-above-igg_mapped_to_genome.bam.bai
4.91 MB
mixture-of-above-igg_mapped_to_genome.bam
183.96 MB
mixture-of-above-igg_mapped_to_genome_stats.txt
1.81 kB
mixture-of-above-igg_mapped_to_genome_SJ.out.tab
218.60 kB
iCount xlsites
mixture-of-above-igg_mapped_to_genome_skipped.bam
3.06 kB
mixture-of-above-igg_mapped_to_genome_single.bed.gz
687.88 kB
mixture-of-above-igg_mapped_to_genome_singleAndMulti.bed.gz
5.14 MB
mixture-of-above-igg_mapped_to_genome_reads_single.bed.gz
715.52 kB
mixture-of-above-igg_mapped_to_genome_single.bedgraph
2.37 MB
iCount summary
mixture-of-above-igg_mapped_to_genome_single_summary_type.tsv
654 B
mixture-of-above-igg_mapped_to_genome_single_summary_subtype.tsv
965 B
mixture-of-above-igg_mapped_to_genome_single_summary_gene.tsv
1.71 MB
iCount RNA-maps
mixture-of-above-igg_mapped_to_genome_single.tar.gz
593.76 kB

JE_10weeks_829_21.3_sample11_25

FASTQ file (CLIP)
je-10weeks-829-21-3-sample11-25.fastq.gz
940.27 MB
fastqc
Directory
je-10weeks-829-21-3-sample11-25_fastqc.zip
476.22 kB
iCLIP reads proxy
je-10weeks-829-21-3-sample11-25_mapped_to_genome.fastq.gz
961.77 MB
fastqc
Directory
Paraclu
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single_peaks.bed.gz
1.16 MB
Cutadapt (single-end)
report.txt
668 B
je-10weeks-829-21-3-sample11-25_trimmed.fastq.gz
964.33 MB
fastqc
Directory
STAR
je-10weeks-829-21-3-sample11-25_trimmed_unmapped.out.mate1.fastq.gz
961.77 MB
je-10weeks-829-21-3-sample11-25_trimmed.bam.bai
20.56 kB
je-10weeks-829-21-3-sample11-25_trimmed.bam
1.09 GB
je-10weeks-829-21-3-sample11-25_trimmed_stats.txt
1.78 kB
je-10weeks-829-21-3-sample11-25_trimmed_SJ.out.tab
0 B
je-10weeks-829-21-3-sample11-25_trimmed.bw
105.65 kB
iCount xlsites
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_single.bed.gz
49.38 kB
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_singleAndMulti.bed.gz
77.08 kB
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_reads_single.bed.gz
51.36 kB
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_single.bedgraph
210 B
STAR
je-10weeks-829-21-3-sample11-25_mapped_to_genome_unmapped.out.mate1.fastq.gz
155.21 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome.bam.bai
3.90 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome.bam
899.20 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_stats.txt
1.82 kB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_SJ.out.tab
2.40 MB
iCount xlsites
je-10weeks-829-21-3-sample11-25_mapped_to_genome_skipped.bam
6.73 kB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single.bed.gz
11.69 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_singleAndMulti.bed.gz
18.92 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_reads_single.bed.gz
12.34 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single.bedgraph
49.96 MB
iCount summary
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single_summary_type.tsv
681 B
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single_summary_subtype.tsv
1.04 kB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single_summary_gene.tsv
2.99 MB
iCount RNA-maps
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single.tar.gz
2.32 MB
PEKA
4mer analysis of je-10weeks-829-21-3-sample11-25_mapped_to_genome.tar.gz
756.31 kB

No Sample

Upload iCount sample annotation
20220322_PM21205_annotation_sheet.xlsx
223.67 kB
20220322_PM21205_annotation_sheet.tab.gz
912 B
FASTQ file (CLIP)
mt3i-21-6-c3-16hrs.fastq.gz
241.80 MB
fastqc
Directory
mt3i-21-6-c3-16hrs_fastqc.zip
485.29 kB
FASTQ file (CLIP)
je-10weeks-c1-21-2-sample7-22.fastq.gz
119.26 MB
fastqc
Directory
je-10weeks-c1-21-2-sample7-22_fastqc.zip
543.92 kB
FASTQ file (CLIP)
je-10weeks-829-21-2-sample9-6.fastq.gz
150.58 MB
fastqc
Directory
je-10weeks-829-21-2-sample9-6_fastqc.zip
505.77 kB
FASTQ file (CLIP)
828-21-19-untreated-20210903-sample7.fastq.gz
240.49 MB
fastqc
Directory
828-21-19-untreated-20210903-sample7_fastqc.zip
499.12 kB
FASTQ file (CLIP)
je-10weeks-829-21-3-sample11-25.fastq.gz
940.27 MB
fastqc
Directory
je-10weeks-829-21-3-sample11-25_fastqc.zip
476.22 kB
FASTQ file (CLIP)
je-10weeks-c1-21-3-sample10-24.fastq.gz
929.00 MB
fastqc
Directory
je-10weeks-c1-21-3-sample10-24_fastqc.zip
464.21 kB
FASTQ file (CLIP)
mixture-of-above-igg.fastq.gz
89.45 MB
fastqc
Directory
mixture-of-above-igg_fastqc.zip
570.34 kB
iCLIP reads proxy
mixture-of-above-igg_mapped_to_genome.fastq.gz
86.69 MB
fastqc
Directory
Paraclu
mixture-of-above-igg_mapped_to_genome_single_peaks.bed.gz
41.59 kB
PEKA
4mer analysis of mixture-of-above-igg_mapped_to_genome.tar.gz
471.94 kB
iCount summary
828-21-19-untreated-20210903-sample7_mapped_to_genome_single_summary_type.tsv
666 B
828-21-19-untreated-20210903-sample7_mapped_to_genome_single_summary_subtype.tsv
986 B
828-21-19-untreated-20210903-sample7_mapped_to_genome_single_summary_gene.tsv
2.26 MB
iCount RNA-maps
828-21-19-untreated-20210903-sample7_mapped_to_genome_single.tar.gz
1.04 MB
Paraclu
828-21-19-untreated-20210903-sample7_mapped_to_genome_single_peaks.bed.gz
259.78 kB
Cutadapt (single-end)
report.txt
672 B
828-21-19-untreated-20210903-sample7_trimmed.fastq.gz
244.08 MB
fastqc
Directory
iCount RNA-maps
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single.tar.gz
2.53 MB
FASTQ file (CLIP)
20210716-je-10weeks-c4.fastq.gz
353.16 MB
fastqc
Directory
20210716-je-10weeks-c4_fastqc.zip
482.64 kB
iCLIP reads proxy
20210716-je-10weeks-c4_mapped_to_genome.fastq.gz
359.19 MB
fastqc
Directory
iCount RNA-maps
20210716-je-10weeks-c4_mapped_to_genome_single.tar.gz
1.65 MB
iCLIP reads proxy
je-10weeks-829-21-3-sample11-25_mapped_to_genome.fastq.gz
961.77 MB
fastqc
Directory
Paraclu
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single_peaks.bed.gz
1.16 MB
Cutadapt (single-end)
report.txt
655 B
mixture-of-above-igg_trimmed.fastq.gz
87.91 MB
fastqc
Directory
iCount RNA-maps
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single.tar.gz
889.67 kB
PEKA
4mer analysis of je-10weeks-829-21-2-sample9-6_mapped_to_genome.tar.gz
574.39 kB
FASTQ file (CLIP)
je-10weeks-c3-21-2-sample8-23.fastq.gz
215.45 MB
fastqc
Directory
je-10weeks-c3-21-2-sample8-23_fastqc.zip
483.63 kB
iCount RNA-maps
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single.tar.gz
1000.89 kB
Paraclu
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single_peaks.bed.gz
167.64 kB
iCount RNA-maps
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single.tar.gz
682.84 kB
Paraclu
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single_peaks.bed.gz
101.85 kB
PEKA
4mer analysis of je-10weeks-c1-21-2-sample7-22_mapped_to_genome.tar.gz
519.23 kB
FASTQ file (CLIP)
hek-20um-igg.fastq.gz
43.20 MB
fastqc
Directory
hek-20um-igg_fastqc.zip
613.26 kB
iCLIP reads proxy
hek-20um-igg_mapped_to_genome.fastq.gz
39.68 MB
fastqc
Directory
iCount RNA-maps
hek-20um-igg_mapped_to_genome_single.tar.gz
568.78 kB
Paraclu
hek-20um-igg_mapped_to_genome_single_peaks.bed.gz
12.30 kB
PEKA
4mer analysis of hek-20um-igg_mapped_to_genome.tar.gz
420.60 kB
FASTQ file (CLIP)
mt3i-21-6-c3-24hrs.fastq.gz
79.14 MB
fastqc
Directory
mt3i-21-6-c3-24hrs_fastqc.zip
505.11 kB
iCount RNA-maps
mt3i-21-6-c3-24hrs_mapped_to_genome_single.tar.gz
856.24 kB
Paraclu
mt3i-21-6-c3-24hrs_mapped_to_genome_single_peaks.bed.gz
122.86 kB
iCount RNA-maps
mt3i-21-6-c3-16hrs_mapped_to_genome_single.tar.gz
1.23 MB
Paraclu
mt3i-21-6-c3-16hrs_mapped_to_genome_single_peaks.bed.gz
348.17 kB
FASTQ file (CLIP)
mt3i-21-6-c3-dmso.fastq.gz
762.05 MB
fastqc
Directory
mt3i-21-6-c3-dmso_fastqc.zip
478.70 kB
iCLIP reads proxy
mt3i-21-6-c3-dmso_mapped_to_genome.fastq.gz
781.67 MB
fastqc
Directory
iCount RNA-maps
mt3i-21-6-c3-dmso_mapped_to_genome_single.tar.gz
1.74 MB
Paraclu
mt3i-21-6-c3-dmso_mapped_to_genome_single_peaks.bed.gz
824.68 kB
FASTQ file (CLIP)
hek-dmso.fastq.gz
1.52 MB
fastqc
Directory
hek-dmso_fastqc.zip
555.84 kB
iCLIP reads proxy
hek-dmso_mapped_to_genome.fastq.gz
1.47 MB
fastqc
Directory
iCount RNA-maps
hek-dmso_mapped_to_genome_single.tar.gz
261.08 kB
Paraclu
hek-dmso_mapped_to_genome_single_peaks.bed.gz
229 B
Cutadapt (single-end)
report.txt
643 B
hek-dmso_trimmed.fastq.gz
1.48 MB
fastqc
Directory
FASTQ file (CLIP)
hek-20um.fastq.gz
72.40 MB
fastqc
Directory
hek-20um_fastqc.zip
520.95 kB
Cutadapt (single-end)
report.txt
644 B
hek-20um_trimmed.fastq.gz
69.68 MB
fastqc
Directory
iCLIP reads proxy
hek-20um_mapped_to_genome.fastq.gz
69.85 MB
fastqc
Directory
Paraclu
hek-20um_mapped_to_genome_single_peaks.bed.gz
90.23 kB
iCount RNA-maps
hek-20um_mapped_to_genome_single.tar.gz
751.48 kB
PEKA
4mer analysis of hek-20um_mapped_to_genome.tar.gz
534.16 kB
Cutadapt (single-end)
report.txt
658 B
20210716-je-10weeks-c4_trimmed.fastq.gz
361.01 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
667 B
je-10weeks-c1-21-3-sample10-24_trimmed.fastq.gz
957.12 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
668 B
je-10weeks-829-21-3-sample11-25_trimmed.fastq.gz
964.33 MB
fastqc
Directory
STAR
mixture-of-above-igg_trimmed_unmapped.out.mate1.fastq.gz
86.69 MB
mixture-of-above-igg_trimmed.bam.bai
20.56 kB
mixture-of-above-igg_trimmed.bam
108.68 MB
mixture-of-above-igg_trimmed_stats.txt
1.78 kB
mixture-of-above-igg_trimmed_SJ.out.tab
0 B
mixture-of-above-igg_trimmed.bw
105.85 kB
Cutadapt (single-end)
report.txt
665 B
je-10weeks-829-21-2-sample9-6_trimmed.fastq.gz
150.68 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
665 B
je-10weeks-c3-21-2-sample8-23_trimmed.fastq.gz
220.18 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
666 B
je-10weeks-c1-21-2-sample7-22_trimmed.fastq.gz
114.66 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
648 B
hek-20um-igg_trimmed.fastq.gz
39.99 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
653 B
mt3i-21-6-c3-24hrs_trimmed.fastq.gz
80.75 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
654 B
mt3i-21-6-c3-16hrs_trimmed.fastq.gz
247.15 MB
fastqc
Directory
Cutadapt (single-end)
report.txt
653 B
mt3i-21-6-c3-dmso_trimmed.fastq.gz
778.04 MB
fastqc
Directory
STAR
828-21-19-untreated-20210903-sample7_trimmed_unmapped.out.mate1.fastq.gz
237.86 MB
828-21-19-untreated-20210903-sample7_trimmed.bam.bai
20.56 kB
828-21-19-untreated-20210903-sample7_trimmed.bam
284.99 MB
828-21-19-untreated-20210903-sample7_trimmed_stats.txt
1.78 kB
828-21-19-untreated-20210903-sample7_trimmed_SJ.out.tab
0 B
828-21-19-untreated-20210903-sample7_trimmed.bw
105.30 kB
STAR
20210716-je-10weeks-c4_trimmed_unmapped.out.mate1.fastq.gz
359.19 MB
20210716-je-10weeks-c4_trimmed.bam.bai
20.56 kB
20210716-je-10weeks-c4_trimmed.bam
423.86 MB
20210716-je-10weeks-c4_trimmed_stats.txt
1.78 kB
20210716-je-10weeks-c4_trimmed_SJ.out.tab
0 B
20210716-je-10weeks-c4_trimmed.bw
105.57 kB
iCount xlsites
mixture-of-above-igg_premapped_to_ncRNAs_skipped.bam
4.08 kB
mixture-of-above-igg_premapped_to_ncRNAs_single.bed.gz
23.67 kB
mixture-of-above-igg_premapped_to_ncRNAs_singleAndMulti.bed.gz
38.28 kB
mixture-of-above-igg_premapped_to_ncRNAs_reads_single.bed.gz
24.72 kB
mixture-of-above-igg_premapped_to_ncRNAs_single.bedgraph
192 B
STAR
je-10weeks-829-21-2-sample9-6_trimmed_unmapped.out.mate1.fastq.gz
150.68 MB
je-10weeks-829-21-2-sample9-6_trimmed.bam.bai
20.42 kB
je-10weeks-829-21-2-sample9-6_trimmed.bam
181.39 MB
je-10weeks-829-21-2-sample9-6_trimmed_stats.txt
1.78 kB
je-10weeks-829-21-2-sample9-6_trimmed_SJ.out.tab
0 B
je-10weeks-829-21-2-sample9-6_trimmed.bw
105.37 kB
STAR
je-10weeks-c3-21-2-sample8-23_trimmed_unmapped.out.mate1.fastq.gz
197.25 MB
je-10weeks-c3-21-2-sample8-23_trimmed.bam.bai
20.28 kB
je-10weeks-c3-21-2-sample8-23_trimmed.bam
246.51 MB
je-10weeks-c3-21-2-sample8-23_trimmed_stats.txt
1.78 kB
je-10weeks-c3-21-2-sample8-23_trimmed_SJ.out.tab
0 B
je-10weeks-c3-21-2-sample8-23_trimmed.bw
105.08 kB
STAR
je-10weeks-c1-21-3-sample10-24_trimmed_unmapped.out.mate1.fastq.gz
961.89 MB
je-10weeks-c1-21-3-sample10-24_trimmed.bam.bai
20.56 kB
je-10weeks-c1-21-3-sample10-24_trimmed.bam
1.09 GB
je-10weeks-c1-21-3-sample10-24_trimmed_stats.txt
1.78 kB
je-10weeks-c1-21-3-sample10-24_trimmed_SJ.out.tab
0 B
je-10weeks-c1-21-3-sample10-24_trimmed.bw
105.42 kB
STAR
je-10weeks-c1-21-2-sample7-22_trimmed_unmapped.out.mate1.fastq.gz
115.00 MB
je-10weeks-c1-21-2-sample7-22_trimmed.bam.bai
20.56 kB
je-10weeks-c1-21-2-sample7-22_trimmed.bam
142.92 MB
je-10weeks-c1-21-2-sample7-22_trimmed_stats.txt
1.78 kB
je-10weeks-c1-21-2-sample7-22_trimmed_SJ.out.tab
0 B
je-10weeks-c1-21-2-sample7-22_trimmed.bw
105.68 kB
STAR
hek-20um-igg_trimmed_unmapped.out.mate1.fastq.gz
39.68 MB
hek-20um-igg_trimmed.bam.bai
20.56 kB
hek-20um-igg_trimmed.bam
49.49 MB
hek-20um-igg_trimmed_stats.txt
1.78 kB
hek-20um-igg_trimmed_SJ.out.tab
0 B
hek-20um-igg_trimmed.bw
105.68 kB
STAR
mt3i-21-6-c3-24hrs_trimmed_unmapped.out.mate1.fastq.gz
81.06 MB
mt3i-21-6-c3-24hrs_trimmed.bam.bai
20.56 kB
mt3i-21-6-c3-24hrs_trimmed.bam
95.33 MB
mt3i-21-6-c3-24hrs_trimmed_stats.txt
1.78 kB
mt3i-21-6-c3-24hrs_trimmed_SJ.out.tab
0 B
mt3i-21-6-c3-24hrs_trimmed.bw
104.94 kB
STAR
je-10weeks-829-21-3-sample11-25_trimmed_unmapped.out.mate1.fastq.gz
961.77 MB
je-10weeks-829-21-3-sample11-25_trimmed.bam.bai
20.56 kB
je-10weeks-829-21-3-sample11-25_trimmed.bam
1.09 GB
je-10weeks-829-21-3-sample11-25_trimmed_stats.txt
1.78 kB
je-10weeks-829-21-3-sample11-25_trimmed_SJ.out.tab
0 B
je-10weeks-829-21-3-sample11-25_trimmed.bw
105.65 kB
iCount xlsites
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_skipped.bam
4.09 kB
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_single.bed.gz
34.63 kB
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_singleAndMulti.bed.gz
46.62 kB
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_reads_single.bed.gz
36.57 kB
828-21-19-untreated-20210903-sample7_premapped_to_ncRNAs_single.bedgraph
220 B
STAR
hek-dmso_trimmed_unmapped.out.mate1.fastq.gz
1.47 MB
hek-dmso_trimmed.bam.bai
10.23 kB
hek-dmso_trimmed.bam
1.88 MB
hek-dmso_trimmed_stats.txt
1.77 kB
hek-dmso_trimmed_SJ.out.tab
0 B
hek-dmso_trimmed.bw
103.29 kB
iCLIP reads proxy
828-21-19-untreated-20210903-sample7_mapped_to_genome.fastq.gz
237.86 MB
fastqc
Directory
STAR
mt3i-21-6-c3-16hrs_trimmed_unmapped.out.mate1.fastq.gz
248.17 MB
mt3i-21-6-c3-16hrs_trimmed.bam.bai
20.56 kB
mt3i-21-6-c3-16hrs_trimmed.bam
292.14 MB
mt3i-21-6-c3-16hrs_trimmed_stats.txt
1.78 kB
mt3i-21-6-c3-16hrs_trimmed_SJ.out.tab
0 B
mt3i-21-6-c3-16hrs_trimmed.bw
105.34 kB
STAR
hek-20um_trimmed_unmapped.out.mate1.fastq.gz
69.85 MB
hek-20um_trimmed.bam.bai
20.49 kB
hek-20um_trimmed.bam
85.49 MB
hek-20um_trimmed_stats.txt
1.78 kB
hek-20um_trimmed_SJ.out.tab
0 B
hek-20um_trimmed.bw
105.41 kB
STAR
mt3i-21-6-c3-dmso_trimmed_unmapped.out.mate1.fastq.gz
781.67 MB
mt3i-21-6-c3-dmso_trimmed.bam.bai
20.56 kB
mt3i-21-6-c3-dmso_trimmed.bam
910.78 MB
mt3i-21-6-c3-dmso_trimmed_stats.txt
1.78 kB
mt3i-21-6-c3-dmso_trimmed_SJ.out.tab
0 B
mt3i-21-6-c3-dmso_trimmed.bw
105.68 kB
iCount xlsites
20210716-je-10weeks-c4_premapped_to_ncRNAs_skipped.bam
4.08 kB
20210716-je-10weeks-c4_premapped_to_ncRNAs_single.bed.gz
39.35 kB
20210716-je-10weeks-c4_premapped_to_ncRNAs_singleAndMulti.bed.gz
58.29 kB
20210716-je-10weeks-c4_premapped_to_ncRNAs_reads_single.bed.gz
40.54 kB
20210716-je-10weeks-c4_premapped_to_ncRNAs_single.bedgraph
192 B
STAR
mixture-of-above-igg_mapped_to_genome_unmapped.out.mate1.fastq.gz
29.50 MB
mixture-of-above-igg_mapped_to_genome.bam.bai
4.91 MB
mixture-of-above-igg_mapped_to_genome.bam
183.96 MB
mixture-of-above-igg_mapped_to_genome_stats.txt
1.81 kB
mixture-of-above-igg_mapped_to_genome_SJ.out.tab
218.60 kB
iCount xlsites
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_single.bed.gz
19.12 kB
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_singleAndMulti.bed.gz
30.21 kB
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_reads_single.bed.gz
19.88 kB
je-10weeks-829-21-2-sample9-6_premapped_to_ncRNAs_single.bedgraph
206 B
iCLIP reads proxy
je-10weeks-829-21-2-sample9-6_mapped_to_genome.fastq.gz
150.68 MB
fastqc
Directory
iCLIP reads proxy
je-10weeks-c3-21-2-sample8-23_mapped_to_genome.fastq.gz
197.25 MB
fastqc
Directory
iCount xlsites
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_single.bed.gz
40.42 kB
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_singleAndMulti.bed.gz
49.21 kB
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_reads_single.bed.gz
43.39 kB
je-10weeks-c3-21-2-sample8-23_premapped_to_ncRNAs_single.bedgraph
206 B
iCount xlsites
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_single.bed.gz
16.20 kB
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_singleAndMulti.bed.gz
32.87 kB
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_reads_single.bed.gz
16.60 kB
je-10weeks-c1-21-2-sample7-22_premapped_to_ncRNAs_single.bedgraph
206 B
iCount xlsites
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_single.bed.gz
39.10 kB
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_singleAndMulti.bed.gz
66.67 kB
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_reads_single.bed.gz
40.11 kB
je-10weeks-c1-21-3-sample10-24_premapped_to_ncRNAs_single.bedgraph
208 B
iCLIP reads proxy
je-10weeks-c1-21-2-sample7-22_mapped_to_genome.fastq.gz
115.00 MB
fastqc
Directory
iCount xlsites
hek-20um-igg_premapped_to_ncRNAs_skipped.bam
4.08 kB
hek-20um-igg_premapped_to_ncRNAs_single.bed.gz
17.41 kB
hek-20um-igg_premapped_to_ncRNAs_singleAndMulti.bed.gz
33.01 kB
hek-20um-igg_premapped_to_ncRNAs_reads_single.bed.gz
17.91 kB
hek-20um-igg_premapped_to_ncRNAs_single.bedgraph
172 B
iCLIP reads proxy
mt3i-21-6-c3-24hrs_mapped_to_genome.fastq.gz
81.06 MB
fastqc
Directory
iCLIP reads proxy
je-10weeks-c1-21-3-sample10-24_mapped_to_genome.fastq.gz
961.89 MB
fastqc
Directory
iCount xlsites
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_skipped.bam
4.08 kB
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_single.bed.gz
13.20 kB
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_singleAndMulti.bed.gz
24.04 kB
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_reads_single.bed.gz
13.63 kB
mt3i-21-6-c3-24hrs_premapped_to_ncRNAs_single.bedgraph
184 B
iCount xlsites
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_skipped.bam
4.09 kB
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_single.bed.gz
49.38 kB
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_singleAndMulti.bed.gz
77.08 kB
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_reads_single.bed.gz
51.36 kB
je-10weeks-829-21-3-sample11-25_premapped_to_ncRNAs_single.bedgraph
210 B
iCount xlsites
hek-dmso_premapped_to_ncRNAs_skipped.bam
4.07 kB
hek-dmso_premapped_to_ncRNAs_single.bed.gz
1.27 kB
hek-dmso_premapped_to_ncRNAs_singleAndMulti.bed.gz
2.44 kB
hek-dmso_premapped_to_ncRNAs_reads_single.bed.gz
1.33 kB
hek-dmso_premapped_to_ncRNAs_single.bedgraph
164 B
iCount xlsites
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_skipped.bam
4.08 kB
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_single.bed.gz
26.54 kB
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_singleAndMulti.bed.gz
49.12 kB
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_reads_single.bed.gz
27.39 kB
mt3i-21-6-c3-16hrs_premapped_to_ncRNAs_single.bedgraph
184 B
iCLIP reads proxy
mt3i-21-6-c3-16hrs_mapped_to_genome.fastq.gz
248.17 MB
fastqc
Directory
iCount xlsites
hek-20um_premapped_to_ncRNAs_skipped.bam
4.07 kB
hek-20um_premapped_to_ncRNAs_single.bed.gz
15.62 kB
hek-20um_premapped_to_ncRNAs_singleAndMulti.bed.gz
30.75 kB
hek-20um_premapped_to_ncRNAs_reads_single.bed.gz
16.09 kB
hek-20um_premapped_to_ncRNAs_single.bedgraph
164 B
iCount xlsites
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_skipped.bam
4.08 kB
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_single.bed.gz
33.98 kB
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_singleAndMulti.bed.gz
61.01 kB
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_reads_single.bed.gz
35.25 kB
mt3i-21-6-c3-dmso_premapped_to_ncRNAs_single.bedgraph
182 B
STAR
828-21-19-untreated-20210903-sample7_mapped_to_genome_unmapped.out.mate1.fastq.gz
54.85 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome.bam.bai
4.33 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome.bam
254.81 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome_stats.txt
1.81 kB
828-21-19-untreated-20210903-sample7_mapped_to_genome_SJ.out.tab
598.99 kB
828-21-19-untreated-20210903-sample7_mapped_to_genome.bw
33.35 kB
iCount xlsites
mixture-of-above-igg_mapped_to_genome_skipped.bam
3.06 kB
mixture-of-above-igg_mapped_to_genome_single.bed.gz
687.88 kB
mixture-of-above-igg_mapped_to_genome_singleAndMulti.bed.gz
5.14 MB
mixture-of-above-igg_mapped_to_genome_reads_single.bed.gz
715.52 kB
mixture-of-above-igg_mapped_to_genome_single.bedgraph
2.37 MB
STAR
20210716-je-10weeks-c4_mapped_to_genome_unmapped.out.mate1.fastq.gz
63.07 MB
20210716-je-10weeks-c4_mapped_to_genome.bam.bai
4.27 MB
20210716-je-10weeks-c4_mapped_to_genome.bam
406.77 MB
20210716-je-10weeks-c4_mapped_to_genome_stats.txt
1.81 kB
20210716-je-10weeks-c4_mapped_to_genome_SJ.out.tab
1.42 MB
STAR
je-10weeks-829-21-2-sample9-6_mapped_to_genome_unmapped.out.mate1.fastq.gz
24.29 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome.bam.bai
4.59 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome.bam
174.42 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_stats.txt
1.81 kB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_SJ.out.tab
387.84 kB
je-10weeks-829-21-2-sample9-6_mapped_to_genome.bw
33.25 kB
STAR
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_unmapped.out.mate1.fastq.gz
26.96 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome.bam.bai
3.58 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome.bam
175.84 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_stats.txt
1.81 kB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_SJ.out.tab
638.93 kB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome.bw
34.80 kB
STAR
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_unmapped.out.mate1.fastq.gz
33.06 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome.bam.bai
4.71 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome.bam
180.43 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_stats.txt
1.81 kB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_SJ.out.tab
273.61 kB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome.bw
33.35 kB
STAR
hek-20um-igg_mapped_to_genome_unmapped.out.mate1.fastq.gz
19.87 MB
hek-20um-igg_mapped_to_genome.bam.bai
5.00 MB
hek-20um-igg_mapped_to_genome.bam
87.96 MB
hek-20um-igg_mapped_to_genome_stats.txt
1.81 kB
hek-20um-igg_mapped_to_genome_SJ.out.tab
284.22 kB
hek-20um-igg_mapped_to_genome.bw
30.12 kB
STAR
mt3i-21-6-c3-24hrs_mapped_to_genome_unmapped.out.mate1.fastq.gz
14.08 MB
mt3i-21-6-c3-24hrs_mapped_to_genome.bam.bai
2.96 MB
mt3i-21-6-c3-24hrs_mapped_to_genome.bam
78.92 MB
mt3i-21-6-c3-24hrs_mapped_to_genome_stats.txt
1.80 kB
mt3i-21-6-c3-24hrs_mapped_to_genome_SJ.out.tab
297.70 kB
mt3i-21-6-c3-24hrs_mapped_to_genome.bw
24.83 kB
STAR
hek-dmso_mapped_to_genome_unmapped.out.mate1.fastq.gz
504.14 kB
hek-dmso_mapped_to_genome.bam.bai
1.63 MB
hek-dmso_mapped_to_genome.bam
2.33 MB
hek-dmso_mapped_to_genome_stats.txt
1.79 kB
hek-dmso_mapped_to_genome_SJ.out.tab
4.46 kB
hek-dmso_mapped_to_genome.bw
16.77 kB
STAR
mt3i-21-6-c3-16hrs_mapped_to_genome_unmapped.out.mate1.fastq.gz
41.75 MB
mt3i-21-6-c3-16hrs_mapped_to_genome.bam.bai
4.04 MB
mt3i-21-6-c3-16hrs_mapped_to_genome.bam
241.02 MB
mt3i-21-6-c3-16hrs_mapped_to_genome_stats.txt
1.81 kB
mt3i-21-6-c3-16hrs_mapped_to_genome_SJ.out.tab
712.13 kB
STAR
hek-20um_mapped_to_genome_unmapped.out.mate1.fastq.gz
14.50 MB
hek-20um_mapped_to_genome.bam.bai
4.77 MB
hek-20um_mapped_to_genome.bam
102.68 MB
hek-20um_mapped_to_genome_stats.txt
1.80 kB
hek-20um_mapped_to_genome_SJ.out.tab
296.19 kB
hek-20um_mapped_to_genome.bw
33.18 kB
STAR
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_unmapped.out.mate1.fastq.gz
125.47 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome.bam.bai
3.93 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome.bam
879.65 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_stats.txt
1.81 kB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_SJ.out.tab
2.51 MB
STAR
je-10weeks-829-21-3-sample11-25_mapped_to_genome_unmapped.out.mate1.fastq.gz
155.21 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome.bam.bai
3.90 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome.bam
899.20 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_stats.txt
1.82 kB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_SJ.out.tab
2.40 MB
iCount xlsites
828-21-19-untreated-20210903-sample7_mapped_to_genome_skipped.bam
4.59 kB
828-21-19-untreated-20210903-sample7_mapped_to_genome_single.bed.gz
2.44 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome_singleAndMulti.bed.gz
5.65 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome_reads_single.bed.gz
2.58 MB
828-21-19-untreated-20210903-sample7_mapped_to_genome_single.bedgraph
9.89 MB
STAR
mt3i-21-6-c3-dmso_mapped_to_genome_unmapped.out.mate1.fastq.gz
150.78 MB
mt3i-21-6-c3-dmso_mapped_to_genome.bam.bai
4.26 MB
mt3i-21-6-c3-dmso_mapped_to_genome.bam
746.64 MB
mt3i-21-6-c3-dmso_mapped_to_genome_stats.txt
1.81 kB
mt3i-21-6-c3-dmso_mapped_to_genome_SJ.out.tab
1.35 MB
iCount xlsites
je-10weeks-829-21-2-sample9-6_mapped_to_genome_skipped.bam
3.07 kB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single.bed.gz
1.65 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_singleAndMulti.bed.gz
5.18 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_reads_single.bed.gz
1.75 MB
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single.bedgraph
6.51 MB
iCount summary
mixture-of-above-igg_mapped_to_genome_single_summary_type.tsv
654 B
mixture-of-above-igg_mapped_to_genome_single_summary_subtype.tsv
965 B
mixture-of-above-igg_mapped_to_genome_single_summary_gene.tsv
1.71 MB
iCount RNA-maps
mixture-of-above-igg_mapped_to_genome_single.tar.gz
593.76 kB
iCount xlsites
20210716-je-10weeks-c4_mapped_to_genome_skipped.bam
4.13 kB
20210716-je-10weeks-c4_mapped_to_genome_single.bed.gz
6.04 MB
20210716-je-10weeks-c4_mapped_to_genome_singleAndMulti.bed.gz
12.24 MB
20210716-je-10weeks-c4_mapped_to_genome_reads_single.bed.gz
6.31 MB
20210716-je-10weeks-c4_mapped_to_genome_single.bedgraph
25.65 MB
iCount xlsites
hek-20um-igg_mapped_to_genome_skipped.bam
3.06 kB
hek-20um-igg_mapped_to_genome_single.bed.gz
427.67 kB
hek-20um-igg_mapped_to_genome_singleAndMulti.bed.gz
4.96 MB
hek-20um-igg_mapped_to_genome_reads_single.bed.gz
440.20 kB
hek-20um-igg_mapped_to_genome_single.bedgraph
1.46 MB
iCount xlsites
mt3i-21-6-c3-24hrs_mapped_to_genome_skipped.bam
4.01 kB
mt3i-21-6-c3-24hrs_mapped_to_genome_single.bed.gz
1.30 MB
mt3i-21-6-c3-24hrs_mapped_to_genome_singleAndMulti.bed.gz
2.11 MB
mt3i-21-6-c3-24hrs_mapped_to_genome_reads_single.bed.gz
1.37 MB
mt3i-21-6-c3-24hrs_mapped_to_genome_single.bedgraph
5.24 MB
iCount xlsites
hek-dmso_mapped_to_genome_skipped.bam
3.05 kB
hek-dmso_mapped_to_genome_single.bed.gz
22.13 kB
hek-dmso_mapped_to_genome_singleAndMulti.bed.gz
82.54 kB
hek-dmso_mapped_to_genome_reads_single.bed.gz
23.40 kB
hek-dmso_mapped_to_genome_single.bedgraph
69.78 kB
iCount xlsites
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_skipped.bam
3.26 kB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single.bed.gz
2.04 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_singleAndMulti.bed.gz
3.56 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_reads_single.bed.gz
2.19 MB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single.bedgraph
7.84 MB
iCount xlsites
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_skipped.bam
3.42 kB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single.bed.gz
1.03 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_singleAndMulti.bed.gz
5.35 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_reads_single.bed.gz
1.08 MB
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single.bedgraph
3.84 MB
iCount xlsites
mt3i-21-6-c3-16hrs_mapped_to_genome_skipped.bam
4.85 kB
mt3i-21-6-c3-16hrs_mapped_to_genome_single.bed.gz
3.55 MB
mt3i-21-6-c3-16hrs_mapped_to_genome_singleAndMulti.bed.gz
6.23 MB
mt3i-21-6-c3-16hrs_mapped_to_genome_reads_single.bed.gz
3.74 MB
mt3i-21-6-c3-16hrs_mapped_to_genome_single.bedgraph
14.94 MB
iCount xlsites
hek-20um_mapped_to_genome_skipped.bam
3.37 kB
hek-20um_mapped_to_genome_single.bed.gz
1.01 MB
hek-20um_mapped_to_genome_singleAndMulti.bed.gz
4.45 MB
hek-20um_mapped_to_genome_reads_single.bed.gz
1.05 MB
hek-20um_mapped_to_genome_single.bedgraph
3.92 MB
iCount xlsites
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_skipped.bam
5.99 kB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single.bed.gz
14.40 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_singleAndMulti.bed.gz
20.86 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_reads_single.bed.gz
15.09 MB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single.bedgraph
63.12 MB
Paraclu
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single_peaks.bed.gz
1.27 MB
iCount xlsites
je-10weeks-829-21-3-sample11-25_mapped_to_genome_skipped.bam
6.73 kB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single.bed.gz
11.69 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_singleAndMulti.bed.gz
18.92 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_reads_single.bed.gz
12.34 MB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single.bedgraph
49.96 MB
iCount summary
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single_summary_type.tsv
665 B
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single_summary_subtype.tsv
914 B
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single_summary_gene.tsv
2.14 MB
Paraclu
je-10weeks-829-21-2-sample9-6_mapped_to_genome_single_peaks.bed.gz
175.87 kB
iCount xlsites
mt3i-21-6-c3-dmso_mapped_to_genome_skipped.bam
5.70 kB
mt3i-21-6-c3-dmso_mapped_to_genome_single.bed.gz
7.48 MB
mt3i-21-6-c3-dmso_mapped_to_genome_singleAndMulti.bed.gz
13.99 MB
mt3i-21-6-c3-dmso_mapped_to_genome_reads_single.bed.gz
7.94 MB
mt3i-21-6-c3-dmso_mapped_to_genome_single.bedgraph
31.94 MB
iCount summary
20210716-je-10weeks-c4_mapped_to_genome_single_summary_type.tsv
673 B
20210716-je-10weeks-c4_mapped_to_genome_single_summary_subtype.tsv
991 B
20210716-je-10weeks-c4_mapped_to_genome_single_summary_gene.tsv
2.61 MB
Paraclu
20210716-je-10weeks-c4_mapped_to_genome_single_peaks.bed.gz
524.72 kB
iCount summary
hek-20um-igg_mapped_to_genome_single_summary_type.tsv
652 B
hek-20um-igg_mapped_to_genome_single_summary_subtype.tsv
1.00 kB
hek-20um-igg_mapped_to_genome_single_summary_gene.tsv
1.48 MB
iCount summary
mt3i-21-6-c3-24hrs_mapped_to_genome_single_summary_type.tsv
653 B
mt3i-21-6-c3-24hrs_mapped_to_genome_single_summary_subtype.tsv
897 B
mt3i-21-6-c3-24hrs_mapped_to_genome_single_summary_gene.tsv
1.92 MB
iCount summary
hek-dmso_mapped_to_genome_single_summary_type.tsv
619 B
hek-dmso_mapped_to_genome_single_summary_subtype.tsv
794 B
hek-dmso_mapped_to_genome_single_summary_gene.tsv
165.97 kB
PEKA
4mer analysis of hek-dmso_mapped_to_genome.tar.gz
140.53 kB
iCount summary
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single_summary_type.tsv
669 B
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single_summary_subtype.tsv
1.03 kB
je-10weeks-c3-21-2-sample8-23_mapped_to_genome_single_summary_gene.tsv
2.19 MB
iCount summary
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single_summary_type.tsv
664 B
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single_summary_subtype.tsv
911 B
je-10weeks-c1-21-2-sample7-22_mapped_to_genome_single_summary_gene.tsv
1.98 MB
iCount summary
mt3i-21-6-c3-16hrs_mapped_to_genome_single_summary_type.tsv
661 B
mt3i-21-6-c3-16hrs_mapped_to_genome_single_summary_subtype.tsv
1.03 kB
mt3i-21-6-c3-16hrs_mapped_to_genome_single_summary_gene.tsv
2.37 MB
iCount summary
hek-20um_mapped_to_genome_single_summary_type.tsv
656 B
hek-20um_mapped_to_genome_single_summary_subtype.tsv
907 B
hek-20um_mapped_to_genome_single_summary_gene.tsv
1.86 MB
iCount summary
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single_summary_type.tsv
679 B
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single_summary_subtype.tsv
1.04 kB
je-10weeks-c1-21-3-sample10-24_mapped_to_genome_single_summary_gene.tsv
2.92 MB
iCount summary
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single_summary_type.tsv
681 B
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single_summary_subtype.tsv
1.04 kB
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single_summary_gene.tsv
2.99 MB
iCount RNA-maps
je-10weeks-829-21-3-sample11-25_mapped_to_genome_single.tar.gz
2.32 MB
iCount summary
mt3i-21-6-c3-dmso_mapped_to_genome_single_summary_type.tsv
673 B
mt3i-21-6-c3-dmso_mapped_to_genome_single_summary_subtype.tsv
1.04 kB
mt3i-21-6-c3-dmso_mapped_to_genome_single_summary_gene.tsv
2.75 MB
PEKA
4mer analysis of 20210716-je-10weeks-c4_mapped_to_genome.tar.gz
687.93 kB
PEKA
4mer analysis of 828-21-19-untreated-20210903-sample7_mapped_to_genome.tar.gz
614.70 kB
PEKA
4mer analysis of mt3i-21-6-c3-24hrs_mapped_to_genome.tar.gz
559.05 kB
PEKA
4mer analysis of je-10weeks-c3-21-2-sample8-23_mapped_to_genome.tar.gz
604.42 kB
PEKA
4mer analysis of mt3i-21-6-c3-16hrs_mapped_to_genome.tar.gz
634.77 kB
PEKA
4mer analysis of je-10weeks-c1-21-3-sample10-24_mapped_to_genome.tar.gz
769.10 kB
PEKA
4mer analysis of je-10weeks-829-21-3-sample11-25_mapped_to_genome.tar.gz
756.31 kB
PEKA
4mer analysis of mt3i-21-6-c3-dmso_mapped_to_genome.tar.gz
703.56 kB